@sjcrh/proteinpaint-types 2.188.1 → 2.190.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (245) hide show
  1. package/README.md +8 -20
  2. package/dist/index.js +422 -553
  3. package/dist/index.js.map +7 -0
  4. package/package.json +13 -25
  5. package/dist/aiProjectAdmin.js +0 -11
  6. package/dist/aiProjectSelectedWSImages.js +0 -11
  7. package/dist/aiProjectTrainModel.js +0 -11
  8. package/dist/alphaGenome.js +0 -11
  9. package/dist/alphaGenomeTypes.js +0 -11
  10. package/dist/brainImaging.js +0 -11
  11. package/dist/brainImagingSamples.js +0 -11
  12. package/dist/burden.js +0 -11
  13. package/dist/chunk-2744ACBX.js +0 -126
  14. package/dist/chunk-2BCLGYAG.js +0 -96
  15. package/dist/chunk-2C4X5B6N.js +0 -62
  16. package/dist/chunk-2VJRTZE2.js +0 -287
  17. package/dist/chunk-46YIGVUP.js +0 -908
  18. package/dist/chunk-4EAGOSMN.js +0 -128
  19. package/dist/chunk-5H2LJKPX.js +0 -104
  20. package/dist/chunk-5L4VF3ZL.js +0 -266
  21. package/dist/chunk-5N7V62ZL.js +0 -231
  22. package/dist/chunk-62XTWOVJ.js +0 -273
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  28. package/dist/chunk-BZVFHGN3.js +0 -350
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  53. package/dist/chunk-P25WDNMD.js +0 -171
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  59. package/dist/chunk-SDZIGJY3.js +0 -5931
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  61. package/dist/chunk-TD4YLTHL.js +0 -158
  62. package/dist/chunk-TEXOICIS.js +0 -11810
  63. package/dist/chunk-THQOFV2K.js +0 -205
  64. package/dist/chunk-TQQWSHFM.js +0 -5980
  65. package/dist/chunk-U3BTVE5T.js +0 -111
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  69. package/dist/chunk-V3JDD3ZG.js +0 -3671
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  72. package/dist/chunk-W3F3CLYP.js +0 -61
  73. package/dist/chunk-X4JBWMXY.js +0 -130
  74. package/dist/chunk-X5E72ZXA.js +0 -5979
  75. package/dist/chunk-YNHC5SXO.js +0 -1780
  76. package/dist/chunk-YPEFUAJW.js +0 -62
  77. package/dist/chunk-YSTMGNYR.js +0 -113
  78. package/dist/chunk-YW5G4M5D.js +0 -158
  79. package/dist/chunk-Z3IYM5OK.js +0 -296
  80. package/dist/chunk-ZCV62ELK.js +0 -96
  81. package/dist/chunk-ZIOJDN75.js +0 -197
  82. package/dist/chunk-ZMDZYG5B.js +0 -4224
  83. package/dist/clearwsisession.js +0 -78
  84. package/dist/clearwsisessions.js +0 -13
  85. package/dist/correlationVolcano.js +0 -11
  86. package/dist/dataset.js +0 -11
  87. package/dist/deleteWSITileSelection.js +0 -11
  88. package/dist/dsdata.js +0 -11
  89. package/dist/dzimages.js +0 -11
  90. package/dist/gdc.grin2.js +0 -17
  91. package/dist/gdc.maf.js +0 -11
  92. package/dist/gdc.mafBuild.js +0 -11
  93. package/dist/genelookup.js +0 -11
  94. package/dist/genesetEnrichment.js +0 -11
  95. package/dist/genesetOverrepresentation.js +0 -11
  96. package/dist/grin2.js +0 -11
  97. package/dist/healthcheck.js +0 -11
  98. package/dist/hicdata.js +0 -11
  99. package/dist/hicgenome.js +0 -11
  100. package/dist/hicstat.js +0 -11
  101. package/dist/img.js +0 -11
  102. package/dist/isoformlst.js +0 -11
  103. package/dist/ntseq.js +0 -11
  104. package/dist/pdomain.js +0 -11
  105. package/dist/samplewsimages.js +0 -13
  106. package/dist/saveWSIAnnotation.js +0 -11
  107. package/dist/snp.js +0 -11
  108. package/dist/termdb.DE.js +0 -11
  109. package/dist/termdb.categories.js +0 -11
  110. package/dist/termdb.chat.js +0 -3631
  111. package/dist/termdb.chat2.js +0 -15
  112. package/dist/termdb.cluster.js +0 -11
  113. package/dist/termdb.cohort.summary.js +0 -11
  114. package/dist/termdb.cohorts.js +0 -11
  115. package/dist/termdb.dapVolcano.js +0 -11
  116. package/dist/termdb.descrstats.js +0 -11
  117. package/dist/termdb.diffMeth.js +0 -11
  118. package/dist/termdb.dmr.js +0 -11
  119. package/dist/termdb.filterTermValues.js +0 -11
  120. package/dist/termdb.isoformAvailability.js +0 -11
  121. package/dist/termdb.numericcategories.js +0 -11
  122. package/dist/termdb.percentile.js +0 -11
  123. package/dist/termdb.profileFormScores.js +0 -11
  124. package/dist/termdb.profileForms2Scores.js +0 -11
  125. package/dist/termdb.profileScores.js +0 -11
  126. package/dist/termdb.proteome.js +0 -11
  127. package/dist/termdb.rootterm.js +0 -11
  128. package/dist/termdb.runChart.js +0 -13
  129. package/dist/termdb.sampleImages.js +0 -11
  130. package/dist/termdb.sampleScatter.js +0 -11
  131. package/dist/termdb.singleSampleMutation.js +0 -11
  132. package/dist/termdb.singlecellDEgenes.js +0 -11
  133. package/dist/termdb.singlecellData.js +0 -11
  134. package/dist/termdb.singlecellSamples.js +0 -11
  135. package/dist/termdb.termchildren.js +0 -11
  136. package/dist/termdb.termsbyids.js +0 -11
  137. package/dist/termdb.topMutatedGenes.js +0 -11
  138. package/dist/termdb.topTermsByType.js +0 -11
  139. package/dist/termdb.topVariablyExpressedGenes.js +0 -11
  140. package/dist/termdb.violinBox.js +0 -17
  141. package/dist/tileserver.js +0 -11
  142. package/dist/wsimages.js +0 -11
  143. package/dist/wsisamples.js +0 -11
  144. package/src/Mclass.ts +0 -8
  145. package/src/dataset.ts +0 -2186
  146. package/src/docs.json +0 -16417
  147. package/src/fileOrUrl.ts +0 -15
  148. package/src/filter.ts +0 -110
  149. package/src/genome.ts +0 -129
  150. package/src/index.ts +0 -94
  151. package/src/routes/aiProjectAdmin.ts +0 -37
  152. package/src/routes/aiProjectSelectedWSImages.ts +0 -48
  153. package/src/routes/aiProjectTrainModel.ts +0 -20
  154. package/src/routes/alphaGenome.ts +0 -27
  155. package/src/routes/alphaGenomeTypes.ts +0 -21
  156. package/src/routes/brainImaging.ts +0 -47
  157. package/src/routes/brainImagingSamples.ts +0 -25
  158. package/src/routes/burden.ts +0 -113
  159. package/src/routes/clearwsisessions.ts +0 -19
  160. package/src/routes/correlationVolcano.ts +0 -51
  161. package/src/routes/dataset.ts +0 -14
  162. package/src/routes/deleteWSITileSelection.ts +0 -25
  163. package/src/routes/dsdata.ts +0 -14
  164. package/src/routes/dzimages.ts +0 -25
  165. package/src/routes/errorResponse.ts +0 -6
  166. package/src/routes/filter.gdc.ts +0 -15
  167. package/src/routes/gdc.grin2.ts +0 -246
  168. package/src/routes/gdc.maf.ts +0 -52
  169. package/src/routes/gdc.mafBuild.ts +0 -20
  170. package/src/routes/genelookup.ts +0 -22
  171. package/src/routes/genesetEnrichment.ts +0 -116
  172. package/src/routes/genesetOverrepresentation.ts +0 -48
  173. package/src/routes/grin2.ts +0 -173
  174. package/src/routes/healthcheck.ts +0 -80
  175. package/src/routes/hicdata.ts +0 -48
  176. package/src/routes/hicgenome.ts +0 -50
  177. package/src/routes/hicstat.ts +0 -57
  178. package/src/routes/img.ts +0 -23
  179. package/src/routes/isoformlst.ts +0 -14
  180. package/src/routes/ntseq.ts +0 -14
  181. package/src/routes/pdomain.ts +0 -14
  182. package/src/routes/routeApi.ts +0 -47
  183. package/src/routes/samplewsimages.ts +0 -44
  184. package/src/routes/saveWSIAnnotation.ts +0 -25
  185. package/src/routes/snp.ts +0 -13
  186. package/src/routes/termdb.DE.ts +0 -220
  187. package/src/routes/termdb.categories.ts +0 -74
  188. package/src/routes/termdb.chat2.ts +0 -190
  189. package/src/routes/termdb.cluster.ts +0 -134
  190. package/src/routes/termdb.cohort.summary.ts +0 -14
  191. package/src/routes/termdb.cohorts.ts +0 -14
  192. package/src/routes/termdb.dapVolcano.ts +0 -35
  193. package/src/routes/termdb.descrstats.ts +0 -75
  194. package/src/routes/termdb.diffMeth.ts +0 -63
  195. package/src/routes/termdb.dmr.ts +0 -121
  196. package/src/routes/termdb.filterTermValues.ts +0 -23
  197. package/src/routes/termdb.isoformAvailability.ts +0 -22
  198. package/src/routes/termdb.numericcategories.ts +0 -32
  199. package/src/routes/termdb.percentile.ts +0 -67
  200. package/src/routes/termdb.profileFormScores.ts +0 -26
  201. package/src/routes/termdb.profileForms2Scores.ts +0 -25
  202. package/src/routes/termdb.profileScores.ts +0 -27
  203. package/src/routes/termdb.proteome.ts +0 -13
  204. package/src/routes/termdb.rootterm.ts +0 -49
  205. package/src/routes/termdb.runChart.ts +0 -66
  206. package/src/routes/termdb.sampleImages.ts +0 -26
  207. package/src/routes/termdb.sampleScatter.ts +0 -60
  208. package/src/routes/termdb.singleSampleMutation.ts +0 -51
  209. package/src/routes/termdb.singlecellDEgenes.ts +0 -50
  210. package/src/routes/termdb.singlecellData.ts +0 -75
  211. package/src/routes/termdb.singlecellSamples.ts +0 -50
  212. package/src/routes/termdb.termchildren.ts +0 -49
  213. package/src/routes/termdb.termsbyids.ts +0 -26
  214. package/src/routes/termdb.topMutatedGenes.ts +0 -51
  215. package/src/routes/termdb.topTermsByType.ts +0 -32
  216. package/src/routes/termdb.topVariablyExpressedGenes.ts +0 -54
  217. package/src/routes/termdb.violinBox.ts +0 -230
  218. package/src/routes/tileserver.ts +0 -14
  219. package/src/routes/wsimages.ts +0 -34
  220. package/src/routes/wsisamples.ts +0 -25
  221. package/src/termdb.matrix.ts +0 -57
  222. package/src/terms/categorical.ts +0 -18
  223. package/src/terms/condition.ts +0 -73
  224. package/src/terms/date.ts +0 -20
  225. package/src/terms/dnaMethylation.ts +0 -28
  226. package/src/terms/geneExpression.ts +0 -38
  227. package/src/terms/geneVariant.ts +0 -132
  228. package/src/terms/isoformExpression.ts +0 -36
  229. package/src/terms/metaboliteIntensity.ts +0 -30
  230. package/src/terms/numeric.ts +0 -278
  231. package/src/terms/proteomeAbundance.ts +0 -38
  232. package/src/terms/q.ts +0 -105
  233. package/src/terms/qualitative.ts +0 -73
  234. package/src/terms/samplelst.ts +0 -34
  235. package/src/terms/singleCellCellType.ts +0 -18
  236. package/src/terms/singleCellGeneExpression.ts +0 -32
  237. package/src/terms/snp.ts +0 -24
  238. package/src/terms/snps.ts +0 -111
  239. package/src/terms/ssGSEA.ts +0 -26
  240. package/src/terms/term.ts +0 -60
  241. package/src/terms/termCollection.ts +0 -139
  242. package/src/terms/tw.ts +0 -64
  243. package/src/termsetting.ts +0 -201
  244. package/src/test/numeric.type.spec.ts +0 -275
  245. package/src/vocab.ts +0 -37
@@ -1,238 +0,0 @@
1
- import {
2
- __toESM,
3
- require_lib
4
- } from "./chunk-YNHC5SXO.js";
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-
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- // dist/burden.ts
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- var import_typia = __toESM(require_lib(), 1);
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-
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- // src/routes/burden.ts
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- var burdenPayload = {
11
- request: {
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- typeId: "BurdenRequest"
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- },
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- response: {
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- typeId: "BurdenResponse"
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- },
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- examples: [
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- {
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- request: {
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- body: {
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- genome: "hg38",
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- // TODO: !!! use hg38-test and TermdbTest !!!
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- dslabel: "SJLife",
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- diaggrp: 5,
25
- sex: 1,
26
- white: 1,
27
- agedx: 1,
28
- bleo: 0,
29
- etop: 0,
30
- cisp: 0,
31
- carbo: 0,
32
- steriod: 0,
33
- vcr: 0,
34
- hdmtx: 0,
35
- itmt: 0,
36
- ced: 0,
37
- dox: 0,
38
- heart: 0,
39
- brain: 0,
40
- abd: 0,
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- pelvis: 0,
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- chest: 0
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- }
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- },
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- response: {
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- header: { status: 200 }
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- }
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- }
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- ]
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- };
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-
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- // dist/burden.ts
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- var validBurdenRequest = (input) => {
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- const errors = [];
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- const __is = (input2) => {
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.showCI && "number" === typeof input3.diaggrp && "number" === typeof input3.sex && "number" === typeof input3.white && "number" === typeof input3.agedx && "number" === typeof input3.bleo && "number" === typeof input3.etop && "number" === typeof input3.cisp && "number" === typeof input3.carbo && "number" === typeof input3.steriod && "number" === typeof input3.vcr && "number" === typeof input3.hdmtx && "number" === typeof input3.itmt && "number" === typeof input3.ced && "number" === typeof input3.dox && "number" === typeof input3.heart && "number" === typeof input3.brain && "number" === typeof input3.abd && "number" === typeof input3.pelvis && "number" === typeof input3.chest;
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- return "object" === typeof input2 && null !== input2 && $io0(input2);
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- };
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- if (false === __is(input)) {
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- const $report = import_typia.createValidate.report(errors);
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- ((input2, _path, _exceptionable = true) => {
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- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
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- path: _path2 + ".genome",
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- expected: "string",
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- value: input3.genome
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- }), "string" === typeof input3.dslabel || $report(_exceptionable2, {
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- path: _path2 + ".dslabel",
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- expected: "string",
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- value: input3.dslabel
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- }), "boolean" === typeof input3.showCI || $report(_exceptionable2, {
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- path: _path2 + ".showCI",
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- expected: "boolean",
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- value: input3.showCI
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- }), "number" === typeof input3.diaggrp || $report(_exceptionable2, {
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- path: _path2 + ".diaggrp",
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- expected: "number",
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- value: input3.diaggrp
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- }), "number" === typeof input3.sex || $report(_exceptionable2, {
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- path: _path2 + ".sex",
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- expected: "number",
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- value: input3.sex
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- }), "number" === typeof input3.white || $report(_exceptionable2, {
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- path: _path2 + ".white",
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- expected: "number",
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- value: input3.white
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- }), "number" === typeof input3.agedx || $report(_exceptionable2, {
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- path: _path2 + ".agedx",
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- expected: "number",
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- value: input3.agedx
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- }), "number" === typeof input3.bleo || $report(_exceptionable2, {
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- path: _path2 + ".bleo",
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- expected: "number",
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- value: input3.bleo
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- }), "number" === typeof input3.etop || $report(_exceptionable2, {
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- path: _path2 + ".etop",
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- expected: "number",
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- value: input3.etop
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- }), "number" === typeof input3.cisp || $report(_exceptionable2, {
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- path: _path2 + ".cisp",
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- expected: "number",
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- value: input3.cisp
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- }), "number" === typeof input3.carbo || $report(_exceptionable2, {
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- path: _path2 + ".carbo",
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- expected: "number",
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- value: input3.carbo
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- }), "number" === typeof input3.steriod || $report(_exceptionable2, {
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- path: _path2 + ".steriod",
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- expected: "number",
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- value: input3.steriod
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- }), "number" === typeof input3.vcr || $report(_exceptionable2, {
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- path: _path2 + ".vcr",
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- expected: "number",
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- value: input3.vcr
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- }), "number" === typeof input3.hdmtx || $report(_exceptionable2, {
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- path: _path2 + ".hdmtx",
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- expected: "number",
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- value: input3.hdmtx
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- }), "number" === typeof input3.itmt || $report(_exceptionable2, {
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- path: _path2 + ".itmt",
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- expected: "number",
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- value: input3.itmt
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- }), "number" === typeof input3.ced || $report(_exceptionable2, {
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- path: _path2 + ".ced",
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- expected: "number",
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- value: input3.ced
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- }), "number" === typeof input3.dox || $report(_exceptionable2, {
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- path: _path2 + ".dox",
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- expected: "number",
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- value: input3.dox
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- }), "number" === typeof input3.heart || $report(_exceptionable2, {
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- path: _path2 + ".heart",
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- expected: "number",
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- value: input3.heart
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- }), "number" === typeof input3.brain || $report(_exceptionable2, {
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- path: _path2 + ".brain",
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- expected: "number",
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- value: input3.brain
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- }), "number" === typeof input3.abd || $report(_exceptionable2, {
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- path: _path2 + ".abd",
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- expected: "number",
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- value: input3.abd
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- }), "number" === typeof input3.pelvis || $report(_exceptionable2, {
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- path: _path2 + ".pelvis",
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- expected: "number",
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- value: input3.pelvis
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- }), "number" === typeof input3.chest || $report(_exceptionable2, {
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- path: _path2 + ".chest",
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- expected: "number",
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- value: input3.chest
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- })].every((flag) => flag);
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- return ("object" === typeof input2 && null !== input2 || $report(true, {
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- path: _path + "",
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- expected: "BurdenRequest",
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- value: input2
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- })) && $vo0(input2, _path + "", true) || $report(true, {
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- path: _path + "",
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- expected: "BurdenRequest",
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- value: input2
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- });
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- })(input, "$input", true);
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- }
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- const success = 0 === errors.length;
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- return {
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- success,
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- errors,
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- data: success ? input : void 0
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- };
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- };
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- var validBurdenResponse = (input) => {
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- const errors = [];
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- const __is = (input2) => {
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- const $io0 = (input3) => "string" === typeof input3.status && (Array.isArray(input3.keys) && input3.keys.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.rows) && input3.rows.every((elem) => Array.isArray(elem) && elem.every((elem2) => "number" === typeof elem2)));
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- return "object" === typeof input2 && null !== input2 && $io0(input2);
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- };
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- if (false === __is(input)) {
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- const $report = import_typia.createValidate.report(errors);
177
- ((input2, _path, _exceptionable = true) => {
178
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.status || $report(_exceptionable2, {
179
- path: _path2 + ".status",
180
- expected: "string",
181
- value: input3.status
182
- }), (Array.isArray(input3.keys) || $report(_exceptionable2, {
183
- path: _path2 + ".keys",
184
- expected: "Array<string>",
185
- value: input3.keys
186
- })) && input3.keys.map((elem, _index1) => "string" === typeof elem || $report(_exceptionable2, {
187
- path: _path2 + ".keys[" + _index1 + "]",
188
- expected: "string",
189
- value: elem
190
- })).every((flag) => flag) || $report(_exceptionable2, {
191
- path: _path2 + ".keys",
192
- expected: "Array<string>",
193
- value: input3.keys
194
- }), (Array.isArray(input3.rows) || $report(_exceptionable2, {
195
- path: _path2 + ".rows",
196
- expected: "Array<Array<number>>",
197
- value: input3.rows
198
- })) && input3.rows.map((elem, _index2) => (Array.isArray(elem) || $report(_exceptionable2, {
199
- path: _path2 + ".rows[" + _index2 + "]",
200
- expected: "Array<number>",
201
- value: elem
202
- })) && elem.map((elem2, _index3) => "number" === typeof elem2 || $report(_exceptionable2, {
203
- path: _path2 + ".rows[" + _index2 + "][" + _index3 + "]",
204
- expected: "number",
205
- value: elem2
206
- })).every((flag) => flag) || $report(_exceptionable2, {
207
- path: _path2 + ".rows[" + _index2 + "]",
208
- expected: "Array<number>",
209
- value: elem
210
- })).every((flag) => flag) || $report(_exceptionable2, {
211
- path: _path2 + ".rows",
212
- expected: "Array<Array<number>>",
213
- value: input3.rows
214
- })].every((flag) => flag);
215
- return ("object" === typeof input2 && null !== input2 || $report(true, {
216
- path: _path + "",
217
- expected: "BurdenResponse",
218
- value: input2
219
- })) && $vo0(input2, _path + "", true) || $report(true, {
220
- path: _path + "",
221
- expected: "BurdenResponse",
222
- value: input2
223
- });
224
- })(input, "$input", true);
225
- }
226
- const success = 0 === errors.length;
227
- return {
228
- success,
229
- errors,
230
- data: success ? input : void 0
231
- };
232
- };
233
-
234
- export {
235
- burdenPayload,
236
- validBurdenRequest,
237
- validBurdenResponse
238
- };