@sjcrh/proteinpaint-types 2.184.0 → 2.185.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/chunk-CWJZUUEF.js +341 -0
- package/dist/{chunk-U4A647KI.js → chunk-DII56MJ7.js} +128 -18
- package/dist/{chunk-M7WMC7GC.js → chunk-JMVDRHBL.js} +187 -61
- package/dist/chunk-NLANDPY7.js +330 -0
- package/dist/chunk-UGGNWTJZ.js +385 -0
- package/dist/{chunk-XIRCL7KT.js → chunk-VCEWZVLZ.js} +24 -30
- package/dist/{chunk-NIEACU6R.js → chunk-Z3IYM5OK.js} +5 -1
- package/dist/genesetEnrichment.js +1 -1
- package/dist/index.js +7 -7
- package/dist/termdb.DE.js +1 -1
- package/dist/termdb.cluster.js +1 -1
- package/dist/termdb.diffMeth.js +1 -1
- package/dist/termdb.singlecellDEgenes.js +1 -1
- package/dist/termdb.singlecellData.js +1 -1
- package/dist/termdb.singlecellSamples.js +1 -1
- package/package.json +1 -1
- package/src/dataset.ts +49 -0
- package/src/routes/genesetEnrichment.ts +27 -10
- package/src/routes/termdb.DE.ts +111 -4
- package/src/routes/termdb.chat2.ts +5 -2
- package/src/routes/termdb.cluster.ts +11 -0
- package/src/routes/termdb.diffMeth.ts +18 -10
- package/src/routes/termdb.singlecellDEgenes.ts +20 -16
- package/src/routes/termdb.singlecellData.ts +2 -0
- package/src/routes/termdb.singlecellSamples.ts +4 -3
- package/dist/chunk-3EVYVWI2.js +0 -163
- package/dist/chunk-G6ZTAMGK.js +0 -155
- package/dist/chunk-LJFPSUAL.js +0 -199
package/dist/chunk-G6ZTAMGK.js
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import {
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__toESM,
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require_lib
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} from "./chunk-YNHC5SXO.js";
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// dist/termdb.diffMeth.ts
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var import_typia = __toESM(require_lib(), 1);
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// src/routes/termdb.diffMeth.ts
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var diffMethPayload = {
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request: {
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typeId: "DiffMethRequest"
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},
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response: {
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typeId: "DiffMethResponse"
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}
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};
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// dist/termdb.diffMeth.ts
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var validDiffMethRequest = (input) => {
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const errors = [];
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const __is = (input2) => {
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const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && (void 0 === input3.min_samples_per_group || "number" === typeof input3.min_samples_per_group) && true && true && (void 0 === input3.preAnalysis || "boolean" === typeof input3.preAnalysis);
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return "object" === typeof input2 && null !== input2 && $io0(input2);
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};
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if (false === __is(input)) {
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const $report = import_typia.createValidate.report(errors);
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((input2, _path, _exceptionable = true) => {
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const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
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path: _path2 + ".genome",
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expected: "string",
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value: input3.genome
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}), "string" === typeof input3.dslabel || $report(_exceptionable2, {
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path: _path2 + ".dslabel",
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expected: "string",
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value: input3.dslabel
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}), true, void 0 === input3.min_samples_per_group || "number" === typeof input3.min_samples_per_group || $report(_exceptionable2, {
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path: _path2 + ".min_samples_per_group",
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expected: "(number | undefined)",
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value: input3.min_samples_per_group
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}), true, true, void 0 === input3.preAnalysis || "boolean" === typeof input3.preAnalysis || $report(_exceptionable2, {
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path: _path2 + ".preAnalysis",
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expected: "(boolean | undefined)",
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value: input3.preAnalysis
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})].every((flag) => flag);
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return ("object" === typeof input2 && null !== input2 || $report(true, {
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path: _path + "",
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expected: "DiffMethRequest",
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value: input2
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})) && $vo0(input2, _path + "", true) || $report(true, {
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path: _path + "",
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expected: "DiffMethRequest",
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value: input2
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});
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})(input, "$input", true);
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}
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const success = 0 === errors.length;
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return {
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success,
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errors,
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data: success ? input : void 0
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};
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};
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var validDiffMethResponse = (input) => {
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const errors = [];
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const __is = (input2) => {
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const $io0 = (input3) => Array.isArray(input3.data) && input3.data.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && "number" === typeof input3.sample_size1 && "number" === typeof input3.sample_size2;
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const $io1 = (input3) => "string" === typeof input3.promoter_id && "string" === typeof input3.gene_name && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && "number" === typeof input3.fold_change && "number" === typeof input3.original_p_value && "number" === typeof input3.adjusted_p_value;
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return "object" === typeof input2 && null !== input2 && $io0(input2);
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};
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if (false === __is(input)) {
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const $report = import_typia.createValidate.report(errors);
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((input2, _path, _exceptionable = true) => {
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const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.data) || $report(_exceptionable2, {
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path: _path2 + ".data",
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expected: "Array<DiffMethDataEntry>",
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value: input3.data
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})) && input3.data.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
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path: _path2 + ".data[" + _index1 + "]",
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expected: "DiffMethDataEntry",
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value: elem
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})) && $vo1(elem, _path2 + ".data[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
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path: _path2 + ".data[" + _index1 + "]",
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expected: "DiffMethDataEntry",
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value: elem
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})).every((flag) => flag) || $report(_exceptionable2, {
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path: _path2 + ".data",
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expected: "Array<DiffMethDataEntry>",
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value: input3.data
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}), "number" === typeof input3.sample_size1 || $report(_exceptionable2, {
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path: _path2 + ".sample_size1",
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expected: "number",
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value: input3.sample_size1
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}), "number" === typeof input3.sample_size2 || $report(_exceptionable2, {
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path: _path2 + ".sample_size2",
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value: input3.sample_size2
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})].every((flag) => flag);
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const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.promoter_id || $report(_exceptionable2, {
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path: _path2 + ".promoter_id",
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value: input3.promoter_id
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}), "string" === typeof input3.gene_name || $report(_exceptionable2, {
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path: _path2 + ".gene_name",
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value: input3.gene_name
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}), "string" === typeof input3.chr || $report(_exceptionable2, {
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path: _path2 + ".chr",
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value: input3.chr
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}), "number" === typeof input3.start || $report(_exceptionable2, {
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path: _path2 + ".start",
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value: input3.start
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}), "number" === typeof input3.stop || $report(_exceptionable2, {
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path: _path2 + ".stop",
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value: input3.stop
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}), "number" === typeof input3.fold_change || $report(_exceptionable2, {
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path: _path2 + ".fold_change",
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value: input3.fold_change
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}), "number" === typeof input3.original_p_value || $report(_exceptionable2, {
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path: _path2 + ".original_p_value",
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value: input3.original_p_value
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}), "number" === typeof input3.adjusted_p_value || $report(_exceptionable2, {
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path: _path2 + ".adjusted_p_value",
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value: input3.adjusted_p_value
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})].every((flag) => flag);
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return ("object" === typeof input2 && null !== input2 || $report(true, {
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path: _path + "",
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expected: "DiffMethResponse",
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value: input2
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})) && $vo0(input2, _path + "", true) || $report(true, {
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path: _path + "",
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expected: "DiffMethResponse",
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value: input2
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});
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})(input, "$input", true);
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}
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const success = 0 === errors.length;
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return {
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success,
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errors,
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data: success ? input : void 0
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};
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};
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export {
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diffMethPayload,
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validDiffMethRequest,
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validDiffMethResponse
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};
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package/dist/chunk-LJFPSUAL.js
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import {
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require_lib
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} from "./chunk-YNHC5SXO.js";
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// dist/termdb.DE.ts
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var import_typia = __toESM(require_lib(), 1);
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// src/routes/termdb.DE.ts
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var diffExpPayload = {
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request: {
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typeId: "DERequest"
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},
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response: {
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typeId: "DEResponse"
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// will combine this with type checker
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//valid: (t) => {}
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}
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};
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// dist/termdb.DE.ts
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var validDERequest = (input) => {
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const errors = [];
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const __is = (input2) => {
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const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && "number" === typeof input3.min_count && "number" === typeof input3.min_total_count && "number" === typeof input3.cpm_cutoff && ("text" === input3.storage_type || "HDF5" === input3.storage_type) && (void 0 === input3.method || "string" === typeof input3.method) && true && true && (void 0 === input3.preAnalysis || "boolean" === typeof input3.preAnalysis);
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return "object" === typeof input2 && null !== input2 && $io0(input2);
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};
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if (false === __is(input)) {
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const $report = import_typia.createValidate.report(errors);
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((input2, _path, _exceptionable = true) => {
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const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
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path: _path2 + ".genome",
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expected: "string",
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value: input3.genome
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}), "string" === typeof input3.dslabel || $report(_exceptionable2, {
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value: input3.dslabel
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}), true, "number" === typeof input3.min_count || $report(_exceptionable2, {
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path: _path2 + ".min_count",
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expected: "number",
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value: input3.min_count
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}), "number" === typeof input3.min_total_count || $report(_exceptionable2, {
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path: _path2 + ".min_total_count",
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expected: "number",
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value: input3.min_total_count
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}), "number" === typeof input3.cpm_cutoff || $report(_exceptionable2, {
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path: _path2 + ".cpm_cutoff",
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value: input3.cpm_cutoff
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}), "text" === input3.storage_type || "HDF5" === input3.storage_type || $report(_exceptionable2, {
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path: _path2 + ".storage_type",
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expected: '("HDF5" | "text")',
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value: input3.storage_type
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}), void 0 === input3.method || "string" === typeof input3.method || $report(_exceptionable2, {
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path: _path2 + ".method",
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value: input3.method
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}), true, true, void 0 === input3.preAnalysis || "boolean" === typeof input3.preAnalysis || $report(_exceptionable2, {
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value: input3.preAnalysis
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})].every((flag) => flag);
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return ("object" === typeof input2 && null !== input2 || $report(true, {
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path: _path + "",
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value: input2
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})) && $vo0(input2, _path + "", true) || $report(true, {
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});
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})(input, "$input", true);
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}
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return {
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};
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};
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const $io0 = (input3) => Array.isArray(input3.data) && input3.data.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && "number" === typeof input3.sample_size1 && "number" === typeof input3.sample_size2 && "string" === typeof input3.method && (void 0 === input3.images || Array.isArray(input3.images) && input3.images.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && (void 0 === input3.bcv || "number" === typeof input3.bcv);
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const $io1 = (input3) => "number" === typeof input3.adjusted_p_value && "number" === typeof input3.original_p_value && "number" === typeof input3.fold_change && "string" === typeof input3.gene_id && "string" === typeof input3.gene_name;
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const $io2 = (input3) => "string" === typeof input3.src && "number" === typeof input3.size && "string" === typeof input3.key;
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return "object" === typeof input2 && null !== input2 && $io0(input2);
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};
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expected: "Array<DataEntry>",
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value: input3.data
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})) && input3.data.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
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path: _path2 + ".data[" + _index1 + "]",
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expected: "DataEntry",
|
|
100
|
-
value: elem
|
|
101
|
-
})) && $vo1(elem, _path2 + ".data[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
|
|
102
|
-
path: _path2 + ".data[" + _index1 + "]",
|
|
103
|
-
expected: "DataEntry",
|
|
104
|
-
value: elem
|
|
105
|
-
})).every((flag) => flag) || $report(_exceptionable2, {
|
|
106
|
-
path: _path2 + ".data",
|
|
107
|
-
expected: "Array<DataEntry>",
|
|
108
|
-
value: input3.data
|
|
109
|
-
}), "number" === typeof input3.sample_size1 || $report(_exceptionable2, {
|
|
110
|
-
path: _path2 + ".sample_size1",
|
|
111
|
-
expected: "number",
|
|
112
|
-
value: input3.sample_size1
|
|
113
|
-
}), "number" === typeof input3.sample_size2 || $report(_exceptionable2, {
|
|
114
|
-
path: _path2 + ".sample_size2",
|
|
115
|
-
expected: "number",
|
|
116
|
-
value: input3.sample_size2
|
|
117
|
-
}), "string" === typeof input3.method || $report(_exceptionable2, {
|
|
118
|
-
path: _path2 + ".method",
|
|
119
|
-
expected: "string",
|
|
120
|
-
value: input3.method
|
|
121
|
-
}), void 0 === input3.images || (Array.isArray(input3.images) || $report(_exceptionable2, {
|
|
122
|
-
path: _path2 + ".images",
|
|
123
|
-
expected: "(Array<DEImage> | undefined)",
|
|
124
|
-
value: input3.images
|
|
125
|
-
})) && input3.images.map((elem, _index2) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
|
|
126
|
-
path: _path2 + ".images[" + _index2 + "]",
|
|
127
|
-
expected: "DEImage",
|
|
128
|
-
value: elem
|
|
129
|
-
})) && $vo2(elem, _path2 + ".images[" + _index2 + "]", _exceptionable2) || $report(_exceptionable2, {
|
|
130
|
-
path: _path2 + ".images[" + _index2 + "]",
|
|
131
|
-
expected: "DEImage",
|
|
132
|
-
value: elem
|
|
133
|
-
})).every((flag) => flag) || $report(_exceptionable2, {
|
|
134
|
-
path: _path2 + ".images",
|
|
135
|
-
expected: "(Array<DEImage> | undefined)",
|
|
136
|
-
value: input3.images
|
|
137
|
-
}), void 0 === input3.bcv || "number" === typeof input3.bcv || $report(_exceptionable2, {
|
|
138
|
-
path: _path2 + ".bcv",
|
|
139
|
-
expected: "(number | undefined)",
|
|
140
|
-
value: input3.bcv
|
|
141
|
-
})].every((flag) => flag);
|
|
142
|
-
const $vo1 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.adjusted_p_value || $report(_exceptionable2, {
|
|
143
|
-
path: _path2 + ".adjusted_p_value",
|
|
144
|
-
expected: "number",
|
|
145
|
-
value: input3.adjusted_p_value
|
|
146
|
-
}), "number" === typeof input3.original_p_value || $report(_exceptionable2, {
|
|
147
|
-
path: _path2 + ".original_p_value",
|
|
148
|
-
expected: "number",
|
|
149
|
-
value: input3.original_p_value
|
|
150
|
-
}), "number" === typeof input3.fold_change || $report(_exceptionable2, {
|
|
151
|
-
path: _path2 + ".fold_change",
|
|
152
|
-
expected: "number",
|
|
153
|
-
value: input3.fold_change
|
|
154
|
-
}), "string" === typeof input3.gene_id || $report(_exceptionable2, {
|
|
155
|
-
path: _path2 + ".gene_id",
|
|
156
|
-
expected: "string",
|
|
157
|
-
value: input3.gene_id
|
|
158
|
-
}), "string" === typeof input3.gene_name || $report(_exceptionable2, {
|
|
159
|
-
path: _path2 + ".gene_name",
|
|
160
|
-
expected: "string",
|
|
161
|
-
value: input3.gene_name
|
|
162
|
-
})].every((flag) => flag);
|
|
163
|
-
const $vo2 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.src || $report(_exceptionable2, {
|
|
164
|
-
path: _path2 + ".src",
|
|
165
|
-
expected: "string",
|
|
166
|
-
value: input3.src
|
|
167
|
-
}), "number" === typeof input3.size || $report(_exceptionable2, {
|
|
168
|
-
path: _path2 + ".size",
|
|
169
|
-
expected: "number",
|
|
170
|
-
value: input3.size
|
|
171
|
-
}), "string" === typeof input3.key || $report(_exceptionable2, {
|
|
172
|
-
path: _path2 + ".key",
|
|
173
|
-
expected: "string",
|
|
174
|
-
value: input3.key
|
|
175
|
-
})].every((flag) => flag);
|
|
176
|
-
return ("object" === typeof input2 && null !== input2 || $report(true, {
|
|
177
|
-
path: _path + "",
|
|
178
|
-
expected: "DEResponse",
|
|
179
|
-
value: input2
|
|
180
|
-
})) && $vo0(input2, _path + "", true) || $report(true, {
|
|
181
|
-
path: _path + "",
|
|
182
|
-
expected: "DEResponse",
|
|
183
|
-
value: input2
|
|
184
|
-
});
|
|
185
|
-
})(input, "$input", true);
|
|
186
|
-
}
|
|
187
|
-
const success = 0 === errors.length;
|
|
188
|
-
return {
|
|
189
|
-
success,
|
|
190
|
-
errors,
|
|
191
|
-
data: success ? input : void 0
|
|
192
|
-
};
|
|
193
|
-
};
|
|
194
|
-
|
|
195
|
-
export {
|
|
196
|
-
diffExpPayload,
|
|
197
|
-
validDERequest,
|
|
198
|
-
validDEResponse
|
|
199
|
-
};
|