@sjcrh/proteinpaint-types 2.124.0 → 2.126.0

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Files changed (45) hide show
  1. package/dist/brainImaging.js +1 -1
  2. package/dist/{chunk-NCFUZ5VV.js → chunk-2S4T3WUF.js} +790 -386
  3. package/dist/{chunk-XPOHYEAY.js → chunk-537XOM43.js} +584 -382
  4. package/dist/{chunk-LBGUOJR3.js → chunk-5O422YU6.js} +343 -141
  5. package/dist/{chunk-SQBZAOWB.js → chunk-7IRM7OKB.js} +343 -141
  6. package/dist/{chunk-XZAH6P4D.js → chunk-A3XJW6BZ.js} +5 -1
  7. package/dist/{chunk-3ZT4UCFM.js → chunk-BXPSDGWG.js} +343 -141
  8. package/dist/{chunk-QMWUUGEK.js → chunk-CJC7ZHSZ.js} +376 -174
  9. package/dist/{chunk-F64WJMRL.js → chunk-DJCPG2RT.js} +817 -413
  10. package/dist/{chunk-ZMOSABYP.js → chunk-GZCIY2WK.js} +584 -382
  11. package/dist/{chunk-K7P6C6KU.js → chunk-LVXO4MLR.js} +586 -384
  12. package/dist/chunk-NWEXA2YB.js +308 -0
  13. package/dist/{chunk-AGSW7G4T.js → chunk-O4RAE6UJ.js} +582 -380
  14. package/dist/chunk-RPX4TVMD.js +14 -0
  15. package/dist/{chunk-KRYTJ2SL.js → chunk-RWMZSRX7.js} +2 -2
  16. package/dist/chunk-SMS3Y2XZ.js +75 -0
  17. package/dist/{chunk-RX5EB2HL.js → chunk-VSNV3MLV.js} +343 -141
  18. package/dist/{chunk-5HL5BPE5.js → chunk-W6NLM363.js} +2 -2
  19. package/dist/{chunk-WQGLAGSY.js → chunk-YGX6BZZY.js} +4 -4
  20. package/dist/{chunk-5XRJ5ATE.js → chunk-YOS2YTCE.js} +584 -382
  21. package/dist/clearwsisession.js +3 -13
  22. package/dist/clearwsisessions.js +13 -0
  23. package/dist/correlationVolcano.js +1 -1
  24. package/dist/gdc.grin2.js +17 -0
  25. package/dist/genesetEnrichment.js +1 -1
  26. package/dist/healthcheck.js +1 -1
  27. package/dist/index.js +89 -65
  28. package/dist/termdb.boxplot.js +1 -1
  29. package/dist/termdb.categories.js +1 -1
  30. package/dist/termdb.cluster.js +1 -1
  31. package/dist/termdb.descrstats.js +1 -1
  32. package/dist/termdb.numericcategories.js +1 -1
  33. package/dist/termdb.percentile.js +1 -1
  34. package/dist/termdb.termsbyids.js +1 -1
  35. package/dist/termdb.topMutatedGenes.js +5 -5
  36. package/dist/termdb.topTermsByType.js +1 -1
  37. package/dist/termdb.topVariablyExpressedGenes.js +1 -1
  38. package/dist/termdb.violin.js +1 -1
  39. package/dist/wsisamples.js +3 -3
  40. package/package.json +1 -1
  41. package/src/dataset.ts +6 -0
  42. package/src/index.ts +1 -0
  43. package/src/routes/gdc.grin2.ts +101 -0
  44. package/src/routes/genesetEnrichment.ts +2 -0
  45. package/src/terms/geneVariant.ts +1 -0
@@ -0,0 +1,308 @@
1
+ import {
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+ __toESM,
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+ require_lib
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+ } from "./chunk-CNSSF43V.js";
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+
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+ // dist/gdc.grin2.ts
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+ var import_typia = __toESM(require_lib(), 1);
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+
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+ // src/routes/gdc.grin2.ts
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+ var gdcGRIN2Payload = {
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+ request: {
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+ typeId: "GdcGRIN2listRequest"
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+ },
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+ response: {
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+ typeId: "GdcGRIN2listResponse"
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+ }
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+ };
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+ var runGRIN2Payload = {
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+ request: {
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+ typeId: "RunGRIN2Request"
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+ },
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+ response: {
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+ typeId: "RunGRIN2Response"
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+ }
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+ };
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+
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+ // dist/gdc.grin2.ts
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+ var validGdcGRIN2listRequest = (input) => {
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+ const errors = [];
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+ const __is = (input2) => {
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+ const $io0 = (input3) => "WXS" === input3.experimentalStrategy && true && (void 0 === input3.fileTypes || Array.isArray(input3.fileTypes) && input3.fileTypes.every((elem) => "MAF" === elem));
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+ return "object" === typeof input2 && null !== input2 && $io0(input2);
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+ };
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+ if (false === __is(input)) {
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+ const $report = import_typia.createValidate.report(errors);
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+ ((input2, _path, _exceptionable = true) => {
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+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
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+ path: _path2 + ".experimentalStrategy",
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+ expected: '"WXS"',
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+ value: input3.experimentalStrategy
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+ }), true, void 0 === input3.fileTypes || (Array.isArray(input3.fileTypes) || $report(_exceptionable2, {
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+ path: _path2 + ".fileTypes",
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+ expected: '(Array<"MAF"> | undefined)',
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+ value: input3.fileTypes
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+ })) && input3.fileTypes.map((elem, _index1) => "MAF" === elem || $report(_exceptionable2, {
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+ path: _path2 + ".fileTypes[" + _index1 + "]",
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+ expected: '"MAF"',
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+ value: elem
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+ })).every((flag) => flag) || $report(_exceptionable2, {
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+ path: _path2 + ".fileTypes",
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+ expected: '(Array<"MAF"> | undefined)',
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+ value: input3.fileTypes
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+ })].every((flag) => flag);
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+ return ("object" === typeof input2 && null !== input2 || $report(true, {
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+ path: _path + "",
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+ expected: "GdcGRIN2listRequest",
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+ value: input2
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+ })) && $vo0(input2, _path + "", true) || $report(true, {
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+ path: _path + "",
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+ expected: "GdcGRIN2listRequest",
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+ value: input2
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+ });
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+ })(input, "$input", true);
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+ }
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+ const success = 0 === errors.length;
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+ return {
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+ success,
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+ errors,
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+ data: success ? input : void 0
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+ };
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+ };
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+ var validGdcGRIN2listResponse = (input) => {
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+ const errors = [];
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+ const __is = (input2) => {
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+ const $io0 = (input3) => Array.isArray(input3.files) && input3.files.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && "number" === typeof input3.filesTotal && "number" === typeof input3.maxTotalSizeCompressed && (void 0 === input3.fileCounts || "object" === typeof input3.fileCounts && null !== input3.fileCounts && $io2(input3.fileCounts)) && (void 0 === input3.appliedFilters || "object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) && $io3(input3.appliedFilters));
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+ const $io1 = (input3) => "string" === typeof input3.id && "string" === typeof input3.case_submitter_id && "string" === typeof input3.case_uuid && "number" === typeof input3.file_size && (Array.isArray(input3.sample_types) && input3.sample_types.every((elem) => "string" === typeof elem)) && "string" === typeof input3.project_id && (void 0 === input3.file_format || "MAF" === input3.file_format);
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+ const $io2 = (input3) => "number" === typeof input3.maf;
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+ const $io3 = (input3) => (void 0 === input3.fileTypes || Array.isArray(input3.fileTypes) && input3.fileTypes.every((elem) => "MAF" === elem)) && (void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy);
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+ return "object" === typeof input2 && null !== input2 && $io0(input2);
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+ };
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+ if (false === __is(input)) {
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+ const $report = import_typia.createValidate.report(errors);
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+ ((input2, _path, _exceptionable = true) => {
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+ const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.files) || $report(_exceptionable2, {
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+ path: _path2 + ".files",
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+ expected: "Array<GdcGRIN2File>",
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+ value: input3.files
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+ })) && input3.files.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
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+ path: _path2 + ".files[" + _index1 + "]",
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+ expected: "GdcGRIN2File",
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+ value: elem
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+ })) && $vo1(elem, _path2 + ".files[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".files[" + _index1 + "]",
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+ expected: "GdcGRIN2File",
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+ value: elem
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+ })).every((flag) => flag) || $report(_exceptionable2, {
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+ path: _path2 + ".files",
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+ expected: "Array<GdcGRIN2File>",
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+ value: input3.files
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+ }), "number" === typeof input3.filesTotal || $report(_exceptionable2, {
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+ path: _path2 + ".filesTotal",
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+ expected: "number",
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+ value: input3.filesTotal
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+ }), "number" === typeof input3.maxTotalSizeCompressed || $report(_exceptionable2, {
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+ path: _path2 + ".maxTotalSizeCompressed",
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+ expected: "number",
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+ value: input3.maxTotalSizeCompressed
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+ }), void 0 === input3.fileCounts || ("object" === typeof input3.fileCounts && null !== input3.fileCounts || $report(_exceptionable2, {
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+ path: _path2 + ".fileCounts",
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+ expected: "(__type | undefined)",
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+ value: input3.fileCounts
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+ })) && $vo2(input3.fileCounts, _path2 + ".fileCounts", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".fileCounts",
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+ expected: "(__type | undefined)",
115
+ value: input3.fileCounts
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+ }), void 0 === input3.appliedFilters || ("object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) || $report(_exceptionable2, {
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+ path: _path2 + ".appliedFilters",
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+ expected: "(__type.o1 | undefined)",
119
+ value: input3.appliedFilters
120
+ })) && $vo3(input3.appliedFilters, _path2 + ".appliedFilters", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".appliedFilters",
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+ expected: "(__type.o1 | undefined)",
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+ value: input3.appliedFilters
124
+ })].every((flag) => flag);
125
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
126
+ path: _path2 + ".id",
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+ expected: "string",
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+ value: input3.id
129
+ }), "string" === typeof input3.case_submitter_id || $report(_exceptionable2, {
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+ path: _path2 + ".case_submitter_id",
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+ expected: "string",
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+ value: input3.case_submitter_id
133
+ }), "string" === typeof input3.case_uuid || $report(_exceptionable2, {
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+ path: _path2 + ".case_uuid",
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+ expected: "string",
136
+ value: input3.case_uuid
137
+ }), "number" === typeof input3.file_size || $report(_exceptionable2, {
138
+ path: _path2 + ".file_size",
139
+ expected: "number",
140
+ value: input3.file_size
141
+ }), (Array.isArray(input3.sample_types) || $report(_exceptionable2, {
142
+ path: _path2 + ".sample_types",
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+ expected: "Array<string>",
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+ value: input3.sample_types
145
+ })) && input3.sample_types.map((elem, _index2) => "string" === typeof elem || $report(_exceptionable2, {
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+ path: _path2 + ".sample_types[" + _index2 + "]",
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+ expected: "string",
148
+ value: elem
149
+ })).every((flag) => flag) || $report(_exceptionable2, {
150
+ path: _path2 + ".sample_types",
151
+ expected: "Array<string>",
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+ value: input3.sample_types
153
+ }), "string" === typeof input3.project_id || $report(_exceptionable2, {
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+ path: _path2 + ".project_id",
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+ expected: "string",
156
+ value: input3.project_id
157
+ }), void 0 === input3.file_format || "MAF" === input3.file_format || $report(_exceptionable2, {
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+ path: _path2 + ".file_format",
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+ expected: '("MAF" | undefined)',
160
+ value: input3.file_format
161
+ })].every((flag) => flag);
162
+ const $vo2 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.maf || $report(_exceptionable2, {
163
+ path: _path2 + ".maf",
164
+ expected: "number",
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+ value: input3.maf
166
+ })].every((flag) => flag);
167
+ const $vo3 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.fileTypes || (Array.isArray(input3.fileTypes) || $report(_exceptionable2, {
168
+ path: _path2 + ".fileTypes",
169
+ expected: '(Array<"MAF"> | undefined)',
170
+ value: input3.fileTypes
171
+ })) && input3.fileTypes.map((elem, _index3) => "MAF" === elem || $report(_exceptionable2, {
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+ path: _path2 + ".fileTypes[" + _index3 + "]",
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+ expected: '"MAF"',
174
+ value: elem
175
+ })).every((flag) => flag) || $report(_exceptionable2, {
176
+ path: _path2 + ".fileTypes",
177
+ expected: '(Array<"MAF"> | undefined)',
178
+ value: input3.fileTypes
179
+ }), void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
180
+ path: _path2 + ".experimentalStrategy",
181
+ expected: '("WXS" | undefined)',
182
+ value: input3.experimentalStrategy
183
+ })].every((flag) => flag);
184
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
185
+ path: _path + "",
186
+ expected: "GdcGRIN2listResponse",
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+ value: input2
188
+ })) && $vo0(input2, _path + "", true) || $report(true, {
189
+ path: _path + "",
190
+ expected: "GdcGRIN2listResponse",
191
+ value: input2
192
+ });
193
+ })(input, "$input", true);
194
+ }
195
+ const success = 0 === errors.length;
196
+ return {
197
+ success,
198
+ errors,
199
+ data: success ? input : void 0
200
+ };
201
+ };
202
+ var validRunGRIN2Request = (input) => {
203
+ const errors = [];
204
+ const __is = (input2) => {
205
+ const $join = import_typia.createValidate.join;
206
+ const $io0 = (input3) => Object.keys(input3).every((key) => {
207
+ const value = input3[key];
208
+ if (void 0 === value)
209
+ return true;
210
+ if (RegExp(/(.*)/).test(key))
211
+ return "object" === typeof value && null !== value && false === Array.isArray(value) && $io1(value);
212
+ return true;
213
+ });
214
+ const $io1 = (input3) => void 0 === input3.maf || "string" === typeof input3.maf;
215
+ return "object" === typeof input2 && null !== input2 && false === Array.isArray(input2) && $io0(input2);
216
+ };
217
+ if (false === __is(input)) {
218
+ const $report = import_typia.createValidate.report(errors);
219
+ ((input2, _path, _exceptionable = true) => {
220
+ const $join = import_typia.createValidate.join;
221
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
222
+ const value = input3[key];
223
+ if (void 0 === value)
224
+ return true;
225
+ if (RegExp(/(.*)/).test(key))
226
+ return ("object" === typeof value && null !== value && false === Array.isArray(value) || $report(_exceptionable2, {
227
+ path: _path2 + $join(key),
228
+ expected: "__type",
229
+ value
230
+ })) && $vo1(value, _path2 + $join(key), _exceptionable2) || $report(_exceptionable2, {
231
+ path: _path2 + $join(key),
232
+ expected: "__type",
233
+ value
234
+ });
235
+ return true;
236
+ }).every((flag) => flag)].every((flag) => flag);
237
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.maf || "string" === typeof input3.maf || $report(_exceptionable2, {
238
+ path: _path2 + ".maf",
239
+ expected: "(string | undefined)",
240
+ value: input3.maf
241
+ })].every((flag) => flag);
242
+ return ("object" === typeof input2 && null !== input2 && false === Array.isArray(input2) || $report(true, {
243
+ path: _path + "",
244
+ expected: "RunGRIN2Request",
245
+ value: input2
246
+ })) && $vo0(input2, _path + "", true) || $report(true, {
247
+ path: _path + "",
248
+ expected: "RunGRIN2Request",
249
+ value: input2
250
+ });
251
+ })(input, "$input", true);
252
+ }
253
+ const success = 0 === errors.length;
254
+ return {
255
+ success,
256
+ errors,
257
+ data: success ? input : void 0
258
+ };
259
+ };
260
+ var validRunGRIN2Response = (input) => {
261
+ const errors = [];
262
+ const __is = (input2) => {
263
+ const $io0 = (input3) => ("success" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error) && (void 0 === input3.imagestring || "string" === typeof input3.imagestring) && true && true;
264
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
265
+ };
266
+ if (false === __is(input)) {
267
+ const $report = import_typia.createValidate.report(errors);
268
+ ((input2, _path, _exceptionable = true) => {
269
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["success" === input3.status || "error" === input3.status || $report(_exceptionable2, {
270
+ path: _path2 + ".status",
271
+ expected: '("error" | "success")',
272
+ value: input3.status
273
+ }), void 0 === input3.error || "string" === typeof input3.error || $report(_exceptionable2, {
274
+ path: _path2 + ".error",
275
+ expected: "(string | undefined)",
276
+ value: input3.error
277
+ }), void 0 === input3.imagestring || "string" === typeof input3.imagestring || $report(_exceptionable2, {
278
+ path: _path2 + ".imagestring",
279
+ expected: "(string | undefined)",
280
+ value: input3.imagestring
281
+ }), true, true].every((flag) => flag);
282
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
283
+ path: _path + "",
284
+ expected: "RunGRIN2Response",
285
+ value: input2
286
+ })) && $vo0(input2, _path + "", true) || $report(true, {
287
+ path: _path + "",
288
+ expected: "RunGRIN2Response",
289
+ value: input2
290
+ });
291
+ })(input, "$input", true);
292
+ }
293
+ const success = 0 === errors.length;
294
+ return {
295
+ success,
296
+ errors,
297
+ data: success ? input : void 0
298
+ };
299
+ };
300
+
301
+ export {
302
+ gdcGRIN2Payload,
303
+ runGRIN2Payload,
304
+ validGdcGRIN2listRequest,
305
+ validGdcGRIN2listResponse,
306
+ validRunGRIN2Request,
307
+ validRunGRIN2Response
308
+ };