@sjcrh/proteinpaint-server 2.182.0 → 2.182.2

package/genome/hg38.js

@@ -1,490 +1,5 @@
-import { CancerGeneCensusLst } from "./cgc.js";
-var hg38_default = {
-  species: "human",
-  genomefile: "genomes/hg38.gz",
-  genedb: {
-    dbfile: "anno/genes.hg38.db"
-  },
-  termdbs: {
-    msigdb: {
-      label: "MSigDB (2023.2.Hs)",
-      // to be compatible with ds.label
-      cohort: {
-        db: { file: "anno/msigdb/db_2023.2.Hs" },
-        termdb: {
-          isGeneSetTermdb: true
-        }
-      },
-      analysisGenesetGroups: [
-        { label: "-", value: "-" },
-        { label: "BP: subset of GO", value: "BP: subset of GO" },
-        { label: "MF: subset of GO", value: "MF: subset of GO" },
-        { label: "CC: subset of GO", value: "CC: subset of GO" },
-        { label: "WikiPathways subset of CP", value: "WikiPathways subset of CP" },
-        { label: "REACTOME subset of CP", value: "REACTOME subset of CP" },
-        { label: "H: hallmark gene sets", value: "H: hallmark gene sets" }
-      ],
-      geneORAparam: {
-        minCutoff: 15,
-        maxCutoff: 500
-      }
-    }
-  },
-  proteindomain: {
-    dbfile: "anno/db/proteindomain.db",
-    statement: "select data from domain where isoform=? collate nocase"
-  },
-  snp: {
-    bigbedfile: "anno/dbsnp.hg38.bb"
-  },
-  fimo_motif: {
-    db: "utils/meme/motif_databases/HUMAN/HOCOMOCOv11_full_HUMAN_mono_meme_format.meme",
-    annotationfile: "utils/meme/motif_databases/HUMAN/HOCOMOCOv11_full_annotation_HUMAN_mono.tsv"
-  },
-  tracks: [
-    {
-      __isgene: true,
-      translatecoding: true,
-      file: "anno/refGene.hg38.gz",
-      type: "bedj",
-      name: "RefGene",
-      stackheight: 16,
-      stackspace: 1,
-      vpad: 4,
-      color: "#1D591D"
-    },
-    {
-      __isgene: true,
-      name: "GENCODE v48",
-      file: "anno/gencode.v48.hg38.gz",
-      translatecoding: true,
-      categories: {
-        coding: { color: "#004D99", label: "Coding gene" },
-        nonCoding: { color: "#008833", label: "Noncoding gene" },
-        pseudo: { color: "#CC00CC", label: "Pseudogene" }
-      },
-      type: "bedj",
-      stackheight: 16,
-      stackspace: 1,
-      vpad: 4
-    },
-    {
-      type: "bedj",
-      name: "RepeatMasker",
-      stackheight: 14,
-      file: "anno/rmsk.hg38.gz",
-      onerow: true,
-      categories: {
-        SINE: { color: "#ED8C8E", label: "SINE" },
-        LINE: { color: "#EDCB8C", label: "LINE" },
-        LTR: { color: "#E38CED", label: "LTR" },
-        DNA: { color: "#8C8EED", label: "DNA transposon" },
-        simple: { color: "#8EB88C", label: "Simple repeats" },
-        low_complexity: { color: "#ACEBA9", label: "Low complexity" },
-        satellite: { color: "#B59A84", label: "Satellite" },
-        RNA: { color: "#9DE0E0", label: "RNA repeat" },
-        other: { color: "#9BADC2", label: "Other" },
-        unknown: { color: "#858585", label: "Unknown" }
-      }
-    }
-  ],
-  defaultcoord: { chr: "chr17", start: 7666657, stop: 7688274 },
-  hicenzymefragment: [
-    {
-      enzyme: "DpnII",
-      file: "anno/hicFragment/hic.DpnII.hg38.gz"
-    },
-    {
-      enzyme: "EcoRI",
-      file: "anno/hicFragment/hic.EcoRI.hg38.gz"
-    },
-    {
-      enzyme: "HindIII",
-      file: "anno/hicFragment/hic.HindIII.hg38.gz"
-    },
-    {
-      enzyme: "MboI",
-      file: "anno/hicFragment/hic.MboI.hg38.gz"
-    },
-    {
-      enzyme: "NcoI",
-      file: "anno/hicFragment/hic.NcoI.hg38.gz"
-    }
-  ],
-  geneset: [
-    {
-      name: "Cancer Gene Census",
-      lst: CancerGeneCensusLst
-    }
-  ],
-  majorchr: `chr1	248956422
-chr2	242193529
-chr3	198295559
-chr4	190214555
-chr5	181538259
-chr6	170805979
-chr7	159345973
-chr8	145138636
-chr9	138394717
-chr10	133797422
-chr11	135086622
-chr12	133275309
-chr13	114364328
-chr14	107043718
-chr15	101991189
-chr16	90338345
-chr17	83257441
-chr18	80373285
-chr19	58617616
-chr20	64444167
-chr21	46709983
-chr22	50818468
-chrX	156040895
-chrY	57227415
-chrM	16569`,
-  minorchr: `chr15_KI270905v1_alt	5161414 chr6_GL000256v2_alt	4929269 chr6_GL000254v2_alt	4827813 chr6_GL000251v2_alt	4795265 chr6_GL000253v2_alt	4677643
-	chr6_GL000250v2_alt	4672374 chr6_GL000255v2_alt	4606388 chr6_GL000252v2_alt	4604811 chr17_KI270857v1_alt	2877074 chr16_KI270853v1_alt	2659700
-	chr16_KI270728v1_random	1872759 chr17_GL000258v2_alt	1821992 chr5_GL339449v2_alt	1612928 chr14_KI270847v1_alt	1511111 chr17_KI270908v1_alt	1423190
-	chr14_KI270846v1_alt	1351393 chr5_KI270897v1_alt	1144418 chr7_KI270803v1_alt	1111570 chr19_GL949749v2_alt	1091841 chr19_KI270938v1_alt	1066800
-	chr19_GL949750v2_alt	1066390 chr19_GL949748v2_alt	1064304 chr19_GL949751v2_alt	1002683 chr19_GL949746v1_alt	987716 chr19_GL949752v1_alt	987100
-	chr8_KI270821v1_alt	985506 chr1_KI270763v1_alt	911658 chr6_KI270801v1_alt	870480 chr19_GL949753v2_alt	796479 chr19_GL949747v2_alt	729520
-	chr8_KI270822v1_alt	624492 chr4_GL000257v2_alt	586476 chr12_KI270904v1_alt	572349 chr4_KI270925v1_alt	555799 chr15_KI270852v1_alt	478999
-	chr15_KI270727v1_random	448248 chr9_KI270823v1_alt	439082 chr15_KI270850v1_alt	430880 chr1_KI270759v1_alt	425601 chr12_GL877876v1_alt	408271
-	chrUn_KI270442v1	392061 chr17_KI270862v1_alt	391357 chr15_GL383555v2_alt	388773 chr19_GL383573v1_alt	385657 chr4_KI270896v1_alt	378547
-	chr4_GL383528v1_alt	376187 chr17_GL383563v3_alt	375691 chr8_KI270810v1_alt	374415 chr1_GL383520v2_alt	366580 chr1_KI270762v1_alt	354444
-	chr15_KI270848v1_alt	327382 chr17_KI270909v1_alt	325800 chr14_KI270844v1_alt	322166 chr8_KI270900v1_alt	318687 chr10_GL383546v1_alt	309802
-	chr13_KI270838v1_alt	306913 chr8_KI270816v1_alt	305841 chr22_KI270879v1_alt	304135 chr8_KI270813v1_alt	300230 chr11_KI270831v1_alt	296895
-	chr15_GL383554v1_alt	296527 chr8_KI270811v1_alt	292436 chr18_GL383567v1_alt	289831 chrX_KI270880v1_alt	284869 chr8_KI270812v1_alt	282736
-	chr19_KI270921v1_alt	282224 chr17_KI270729v1_random	280839 chr17_JH159146v1_alt	278131 chrX_KI270913v1_alt	274009 chr6_KI270798v1_alt	271782
-	chr7_KI270808v1_alt	271455 chr22_KI270876v1_alt	263666 chr15_KI270851v1_alt	263054 chr22_KI270875v1_alt	259914 chr1_KI270766v1_alt	256271
-	chr19_KI270882v1_alt	248807 chr3_KI270778v1_alt	248252 chr15_KI270849v1_alt	244917 chr4_KI270786v1_alt	244096 chr12_KI270835v1_alt	238139
-	chr17_KI270858v1_alt	235827 chr19_KI270867v1_alt	233762 chr16_KI270855v1_alt	232857 chr8_KI270926v1_alt	229282 chr5_GL949742v1_alt	226852
-	chr3_KI270780v1_alt	224108 chr17_GL383565v1_alt	223995 chr2_KI270774v1_alt	223625 chr4_KI270790v1_alt	220246 chr11_KI270927v1_alt	218612
-	chr19_KI270932v1_alt	215732 chr11_KI270903v1_alt	214625 chr2_KI270894v1_alt	214158 chr14_GL000225v1_random	211173 chrUn_KI270743v1	210658
-	chr11_KI270832v1_alt	210133 chr7_KI270805v1_alt	209988 chr4_GL000008v2_random	209709 chr7_KI270809v1_alt	209586 chr19_KI270887v1_alt	209512
-	chr4_KI270789v1_alt	205944 chr3_KI270779v1_alt	205312 chr19_KI270914v1_alt	205194 chr19_KI270886v1_alt	204239 chr11_KI270829v1_alt	204059
-	chr14_GL000009v2_random	201709 chr21_GL383579v2_alt	201197 chr11_JH159136v1_alt	200998 chr19_KI270930v1_alt	200773 chrUn_KI270747v1	198735
-	chr18_GL383571v1_alt	198278
-	chr19_KI270920v1_alt	198005
-	chr6_KI270797v1_alt	197536
-	chr3_KI270935v1_alt	197351
-	chr17_KI270861v1_alt	196688
-	chr15_KI270906v1_alt	196384
-	chr5_KI270791v1_alt	195710
-	chr14_KI270722v1_random	194050
-	chr16_GL383556v1_alt	192462
-	chr13_KI270840v1_alt	191684
-	chr14_GL000194v1_random	191469
-	chr11_JH159137v1_alt	191409
-	chr19_KI270917v1_alt	190932
-	chr7_KI270899v1_alt	190869
-	chr19_KI270923v1_alt	189352
-	chr10_KI270825v1_alt	188315
-	chr19_GL383576v1_alt	188024
-	chr19_KI270922v1_alt	187935
-	chrUn_KI270742v1	186739
-	chr22_KI270878v1_alt	186262
-	chr19_KI270929v1_alt	186203
-	chr11_KI270826v1_alt	186169
-	chr6_KB021644v2_alt	185823
-	chr17_GL000205v2_random	185591
-	chr1_KI270765v1_alt	185285
-	chr19_KI270916v1_alt	184516
-	chr19_KI270890v1_alt	184499
-	chr3_KI270784v1_alt	184404
-	chr12_GL383551v1_alt	184319
-	chr20_KI270870v1_alt	183433
-	chrUn_GL000195v1	182896
-	chr1_GL383518v1_alt	182439
-	chr22_KI270736v1_random	181920
-	chr10_KI270824v1_alt	181496
-	chr14_KI270845v1_alt	180703
-	chr3_GL383526v1_alt	180671
-	chr13_KI270839v1_alt	180306
-	chr22_KI270733v1_random	179772
-	chrUn_GL000224v1	179693
-	chr10_GL383545v1_alt	179254
-	chrUn_GL000219v1	179198
-	chr5_KI270792v1_alt	179043
-	chr17_KI270860v1_alt	178921
-	chr19_GL000209v2_alt	177381
-	chr11_KI270830v1_alt	177092
-	chr9_KI270719v1_random	176845
-	chrUn_GL000216v2	176608
-	chr22_KI270928v1_alt	176103
-	chr1_KI270712v1_random	176043
-	chr6_KI270800v1_alt	175808
-	chr1_KI270706v1_random	175055
-	chr2_KI270776v1_alt	174166
-	chr18_KI270912v1_alt	174061
-	chr3_KI270777v1_alt	173649
-	chr5_GL383531v1_alt	173459
-	chr3_JH636055v2_alt	173151
-	chr14_KI270725v1_random	172810
-	chr5_KI270796v1_alt	172708
-	chr9_GL383541v1_alt	171286
-	chr19_KI270885v1_alt	171027
-	chr19_KI270919v1_alt	170701
-	chr19_KI270889v1_alt	170698
-	chr19_KI270891v1_alt	170680
-	chr19_KI270915v1_alt	170665
-	chr19_KI270933v1_alt	170537
-	chr19_KI270883v1_alt	170399
-	chr19_GL383575v2_alt	170222
-	chr19_KI270931v1_alt	170148
-	chr12_GL383550v2_alt	169178
-	chr13_KI270841v1_alt	169134
-	chrUn_KI270744v1	168472
-	chr18_KI270863v1_alt	167999
-	chr18_GL383569v1_alt	167950
-	chr12_GL877875v1_alt	167313
-	chr21_KI270874v1_alt	166743
-	chr3_KI270924v1_alt	166540
-	chr1_KI270761v1_alt	165834
-	chr3_KI270937v1_alt	165607
-	chr22_KI270734v1_random	165050
-	chr18_GL383570v1_alt	164789
-	chr5_KI270794v1_alt	164558
-	chr4_GL383527v1_alt	164536
-	chrUn_GL000213v1	164239
-	chr3_KI270936v1_alt	164170
-	chr3_KI270934v1_alt	163458
-	chr9_GL383539v1_alt	162988
-	chr3_KI270895v1_alt	162896
-	chr22_GL383582v2_alt	162811
-	chr3_KI270782v1_alt	162429
-	chr1_KI270892v1_alt	162212
-	chrUn_GL000220v1	161802
-	chr2_KI270767v1_alt	161578
-	chr2_KI270715v1_random	161471
-	chr2_KI270893v1_alt	161218
-	chrUn_GL000218v1	161147
-	chr18_GL383572v1_alt	159547
-	chr8_KI270817v1_alt	158983
-	chr4_KI270788v1_alt	158965
-	chrUn_KI270749v1	158759
-	chr7_KI270806v1_alt	158166
-	chr7_KI270804v1_alt	157952
-	chr18_KI270911v1_alt	157710
-	chrUn_KI270741v1	157432
-	chr17_KI270910v1_alt	157099
-	chr19_KI270884v1_alt	157053
-	chr19_GL383574v1_alt	155864
-	chr19_KI270888v1_alt	155532
-	chr3_GL000221v1_random	155397
-	chr11_GL383547v1_alt	154407
-	chr2_KI270716v1_random	153799
-	chr12_GL383553v2_alt	152874
-	chr6_KI270799v1_alt	152148
-	chr22_KI270731v1_random	150754
-	chrUn_KI270751v1	150742
-	chrUn_KI270750v1	148850
-	chr8_KI270818v1_alt	145606
-	chrX_KI270881v1_alt	144206
-	chr21_KI270873v1_alt	143900
-	chr2_GL383521v1_alt	143390
-	chr8_KI270814v1_alt	141812
-	chr12_GL383552v1_alt	138655
-	chrUn_KI270519v1	138126
-	chr2_KI270775v1_alt	138019
-	chr17_KI270907v1_alt	137721
-	chrUn_GL000214v1	137718
-	chr8_KI270901v1_alt	136959
-	chr2_KI270770v1_alt	136240
-	chr16_KI270854v1_alt	134193
-	chr8_KI270819v1_alt	133535
-	chr17_GL383564v2_alt	133151
-	chr2_KI270772v1_alt	133041
-	chr8_KI270815v1_alt	132244
-	chr5_KI270795v1_alt	131892
-	chr5_KI270898v1_alt	130957
-	chr20_GL383577v2_alt	128386
-	chr1_KI270708v1_random	127682
-	chr7_KI270807v1_alt	126434
-	chr5_KI270793v1_alt	126136
-	chr6_GL383533v1_alt	124736
-	chr2_GL383522v1_alt	123821
-	chr19_KI270918v1_alt	123111
-	chr12_GL383549v1_alt	120804
-	chr2_KI270769v1_alt	120616
-	chr4_KI270785v1_alt	119912
-	chr12_KI270834v1_alt	119498
-	chr7_GL383534v2_alt	119183
-	chr20_KI270869v1_alt	118774
-	chr21_GL383581v2_alt	116689
-	chr3_KI270781v1_alt	113034
-	chr17_KI270730v1_random	112551
-	chrUn_KI270438v1	112505
-	chr4_KI270787v1_alt	111943
-	chr18_KI270864v1_alt	111737
-	chr2_KI270771v1_alt	110395
-	chr1_GL383519v1_alt	110268
-	chr2_KI270768v1_alt	110099
-	chr1_KI270760v1_alt	109528
-	chr3_KI270783v1_alt	109187
-	chr17_KI270859v1_alt	108763
-	chr11_KI270902v1_alt	106711
-	chr18_GL383568v1_alt	104552
-	chr22_KI270737v1_random	103838
-	chr13_KI270843v1_alt	103832
-	chr22_KI270877v1_alt	101331
-	chr5_GL383530v1_alt	101241
-	chr11_KI270721v1_random	100316
-	chr22_KI270738v1_random	99375
-	chr22_GL383583v2_alt	96924
-	chr2_GL582966v2_alt	96131
-	chrUn_KI270748v1	93321
-	chrUn_KI270435v1	92983
-	chr5_GL000208v1_random	92689
-	chrUn_KI270538v1	91309
-	chr17_GL383566v1_alt	90219
-	chr16_GL383557v1_alt	89672
-	chr17_JH159148v1_alt	88070
-	chr5_GL383532v1_alt	82728
-	chr21_KI270872v1_alt	82692
-	chrUn_KI270756v1	79590
-	chr6_KI270758v1_alt	76752
-	chr12_KI270833v1_alt	76061
-	chr6_KI270802v1_alt	75005
-	chr21_GL383580v2_alt	74653
-	chr22_KB663609v1_alt	74013
-	chr22_KI270739v1_random	73985
-	chr9_GL383540v1_alt	71551
-	chrUn_KI270757v1	71251
-	chr2_KI270773v1_alt	70887
-	chr17_JH159147v1_alt	70345
-	chr11_KI270827v1_alt	67707
-	chr1_KI270709v1_random	66860
-	chrUn_KI270746v1	66486
-	chr16_KI270856v1_alt	63982
-	chr21_GL383578v2_alt	63917
-	chrUn_KI270753v1	62944
-	chr19_KI270868v1_alt	61734
-	chr9_GL383542v1_alt	60032
-	chr20_KI270871v1_alt	58661
-	chr12_KI270836v1_alt	56134
-	chr19_KI270865v1_alt	52969
-	chr1_KI270764v1_alt	50258
-	chrUn_KI270589v1	44474
-	chr14_KI270726v1_random	43739
-	chr19_KI270866v1_alt	43156
-	chr22_KI270735v1_random	42811
-	chr1_KI270711v1_random	42210
-	chrUn_KI270745v1	41891
-	chr1_KI270714v1_random	41717
-	chr22_KI270732v1_random	41543
-	chr1_KI270713v1_random	40745
-	chrUn_KI270754v1	40191
-	chr1_KI270710v1_random	40176
-	chr12_KI270837v1_alt	40090
-	chr9_KI270717v1_random	40062
-	chr14_KI270724v1_random	39555
-	chr9_KI270720v1_random	39050
-	chr14_KI270723v1_random	38115
-	chr9_KI270718v1_random	38054
-	chrUn_KI270317v1	37690
-	chr13_KI270842v1_alt	37287
-	chrY_KI270740v1_random	37240
-	chrUn_KI270755v1	36723
-	chr8_KI270820v1_alt	36640
-	chr1_KI270707v1_random	32032
-	chrUn_KI270579v1	31033
-	chrUn_KI270752v1	27745
-	chrUn_KI270512v1	22689
-	chrUn_KI270322v1	21476
-	chrUn_GL000226v1	15008
-	chrUn_KI270311v1	12399
-	chrUn_KI270366v1	8320
-	chrUn_KI270511v1	8127
-	chrUn_KI270448v1	7992
-	chrUn_KI270521v1	7642
-	chrUn_KI270581v1	7046
-	chrUn_KI270582v1	6504
-	chrUn_KI270515v1	6361
-	chrUn_KI270588v1	6158
-	chrUn_KI270591v1	5796
-	chrUn_KI270522v1	5674
-	chrUn_KI270507v1	5353
-	chrUn_KI270590v1	4685
-	chrUn_KI270584v1	4513
-	chrUn_KI270320v1	4416
-	chrUn_KI270382v1	4215
-	chrUn_KI270468v1	4055
-	chrUn_KI270467v1	3920
-	chrUn_KI270362v1	3530
-	chrUn_KI270517v1	3253
-	chrUn_KI270593v1	3041
-	chrUn_KI270528v1	2983
-	chrUn_KI270587v1	2969
-	chrUn_KI270364v1	2855
-	chrUn_KI270371v1	2805
-	chrUn_KI270333v1	2699
-	chrUn_KI270374v1	2656
-	chrUn_KI270411v1	2646
-	chrUn_KI270414v1	2489
-	chrUn_KI270510v1	2415
-	chrUn_KI270390v1	2387
-	chrUn_KI270375v1	2378
-	chrUn_KI270420v1	2321
-	chrUn_KI270509v1	2318
-	chrUn_KI270315v1	2276
-	chrUn_KI270302v1	2274
-	chrUn_KI270518v1	2186
-	chrUn_KI270530v1	2168
-	chrUn_KI270304v1	2165
-	chrUn_KI270418v1	2145
-	chrUn_KI270424v1	2140
-	chrUn_KI270417v1	2043
-	chrUn_KI270508v1	1951
-	chrUn_KI270303v1	1942
-	chrUn_KI270381v1	1930
-	chrUn_KI270529v1	1899
-	chrUn_KI270425v1	1884
-	chrUn_KI270396v1	1880
-	chrUn_KI270363v1	1803
-	chrUn_KI270386v1	1788
-	chrUn_KI270465v1	1774
-	chrUn_KI270383v1	1750
-	chrUn_KI270384v1	1658
-	chrUn_KI270330v1	1652
-	chrUn_KI270372v1	1650
-	chrUn_KI270548v1	1599
-	chrUn_KI270580v1	1553
-	chrUn_KI270387v1	1537
-	chrUn_KI270391v1	1484
-	chrUn_KI270305v1	1472
-	chrUn_KI270373v1	1451
-	chrUn_KI270422v1	1445
-	chrUn_KI270316v1	1444
-	chrUn_KI270338v1	1428
-	chrUn_KI270340v1	1428
-	chrUn_KI270583v1	1400
-	chrUn_KI270334v1	1368
-	chrUn_KI270429v1	1361
-	chrUn_KI270393v1	1308
-	chrUn_KI270516v1	1300
-	chrUn_KI270389v1	1298
-	chrUn_KI270466v1	1233
-	chrUn_KI270388v1	1216
-	chrUn_KI270544v1	1202
-	chrUn_KI270310v1	1201
-	chrUn_KI270412v1	1179
-	chrUn_KI270395v1	1143
-	chrUn_KI270376v1	1136
-	chrUn_KI270337v1	1121
-	chrUn_KI270335v1	1048
-	chrUn_KI270378v1	1048
-	chrUn_KI270379v1	1045
-	chrUn_KI270329v1	1040
-	chrUn_KI270419v1	1029
-	chrUn_KI270336v1	1026
-	chrUn_KI270312v1	998
-	chrUn_KI270539v1	993
-	chrUn_KI270385v1	990
-	chrUn_KI270423v1	981
-	chrUn_KI270392v1	971
-	chrUn_KI270394v1	970`
-};
+import { getHg38 } from "./hg38.base.js";
+var hg38_default = getHg38();
 export {
   hg38_default as default
 };

package/genome/hg38.mmrf.js

@@ -0,0 +1,13 @@
+import { getHg38 } from "./hg38.base.js";
+const genome = getHg38();
+genome.genedb.dbfile = "anno/genes.hg38.mmrf.db";
+if (genome.tracks?.[1]) {
+  genome.tracks[1].name = "GENCODE v32";
+  genome.tracks[1].file = "anno/gencode.v32.hg38.gz";
+} else {
+  throw new Error("Expected hg38 genome to include a second track");
+}
+var hg38_mmrf_default = genome;
+export {
+  hg38_mmrf_default as default
+};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-server",
-  "version": "2.182.0",
+  "version": "2.182.2",
   "type": "module",
   "description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
   "main": "src/app.js",
@@ -64,9 +64,9 @@
     "@sjcrh/augen": "2.181.1",
     "@sjcrh/proteinpaint-python": "2.181.0",
     "@sjcrh/proteinpaint-r": "2.181.0",
-    "@sjcrh/proteinpaint-rust": "2.182.0",
-    "@sjcrh/proteinpaint-shared": "2.181.0",
-    "@sjcrh/proteinpaint-types": "2.182.0",
+    "@sjcrh/proteinpaint-rust": "2.182.2",
+    "@sjcrh/proteinpaint-shared": "2.182.1",
+    "@sjcrh/proteinpaint-types": "2.182.1",
     "@types/express": "^5.0.0",
     "@types/express-session": "^1.18.1",
     "better-sqlite3": "^12.4.1",

package/routes/profile.polar2.js

@@ -89,7 +89,7 @@ async function getScores(query, ds) {
   };
 }
 function computeMedianPercentage(d, samples) {
-  const percentages = samples.filter((s) => s[d.score.$id]?.value).map((s) => s[d.score.$id].value / (s[d.maxScore.$id]?.value || d.maxScore) * 100);
+  const percentages = samples.filter((s) => s[d.score.$id]?.value != null).map((s) => s[d.score.$id].value / (s[d.maxScore.$id]?.value || d.maxScore) * 100);
   if (percentages.length === 0) return null;
   percentages.sort((a, b) => a - b);
   const mid = Math.floor(percentages.length / 2);