@sjcrh/proteinpaint-client 2.77.0 → 2.78.0

package/dist/{maftimeline-cc2e866c.js → maftimeline-a77349ad.js}

@@ -1 +1 @@
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c=u.append("div").style("display","inline-block");const s=u.append("div").style("display","inline-block").style("vertical-align","top");const l=r.append("tr");const d=l.append("td").append("table").style("border-spacing","20px").style("border-collapse","separate");const g=d.append("tr");o=g.append("td").style("vertical-align","top");o.append("div").text("Shared").style("font-size","2em");const h=o.append("div").style("border","solid 1px black");o=g.append("td").style("vertical-align","top");o.append("div").text("Rising").style("font-size","2em");const m=o.append("div").style("border","solid 1px black");const v=d.append("tr");o=v.append("td").style("vertical-align","top");o.append("div").text("Falling").style("font-size","2em");const y=o.append("div").style("border","solid 1px black");o=v.append("td").style("vertical-align","top");o.append("div").text("R-only").style("font-size","2em");const x=o.append("div").style("border","solid 1px black");for(const n in t){const r=[];const a=f(p);for(const e in t[n].snv4){const o=t[n].snv4[e];o.show=true;o.color=a(o.mutationname);o.samples.sort(((t,e)=>t.date-e.date));for(const t of o.samples){t.color=o.color}r.push(o)}const o=i.append("div").classed("sja_menuoption",true).style("color","black").text(n).on("click",(()=>{for(const e in t){t[e].handle.style("color","black");t[e].show=false}t[n].handle.style("color","red");t[n].show=true;un(r,e,c);on(r,h,m,y,x);cn(r,e,s,c,h,m,y,x)}));t[n].handle=o}for(const e in t){t[e].handle.node().click();break}}function on(t,e,n,r,a){e.selectAll("*").remove();n.selectAll("*").remove();r.selectAll("*").remove();a.selectAll("*").remove();const o=[];const i=[];const u=[];const c=[];for(const e of t){switch(e.subidx){case 1:o.push(e);break;case 2:i.push(e);break;case 3:u.push(e);break;case 4:c.push(e);break}}if(o.length){un(o,null,e,true)}else{e.append("div").style("padding","60px").style("background-color","#ededed").text("no 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resize").attr("class","sja_clb").attr("text-anchor","end").on("mousedown",(t=>{t.preventDefault();const e=t.clientX;const n=t.clientY;const r=C;const a=U;const o=d(document.body);o.on("mousemove",(t=>{W(r+t.clientX-e,a+t.clientY-n)})).on("mouseup",(()=>{o.on("mousemove",null).on("mouseup",null)}))}));const S=Pe().domain([i,u]);const L=(Ke?b():g()).domain([Be,1]);const z=g().domain([1,s]);const _=l.append("g");const I=_.selectAll().data(o).enter().append("path").attr("stroke",(t=>t.color)).attr("fill","none");let j;if($e){j=_.selectAll().data(a).enter().append("circle").attr("fill",(t=>t.color)).attr("fill-opacity",.1).on("mouseover",((t,e)=>{t.target.setAttribute("fill-opacity",.4);tn.clear();tn.show(t.clientX,t.clientY);const n=[];for(const t in e){if(t=="color")continue;if(t=="gene"){n.push({k:"gene",v:'<span style="color:'+e.color+'">'+e.gene+"</span>"});continue}if(t=="date")continue;if(t=="url"){n.push({k:"URL",v:"<a href="+e.url+" target=_blank>LINK</a>"});continue}n.push({k:t,v:e[t]})}h(tn.d,n)})).on("mouseout",(t=>{t.target.setAttribute("fill-opacity",.1)}))}const N=l.append("g");const W=(t,e)=>{C=t;U=e;F=2;const n=Math.max(C,U)/30;k=n;D=n;z.range([Math.pow(F,2),Math.pow(n,2)]);S.range([0,C]);L.range([U,0]);l.attr("width",x+k+C+p).attr("height",f+U+D+w);Y.attr("transform","translate("+(x+k)+","+(f+U+D)+")");A.attr("transform","translate("+x+","+f+")");H.attr("x",x+k+C).attr("y",f+U+D+w-4);m({axis:Y.call(M().scale(S)),showline:true,color:"black",fontsize:Math.max(12,Math.min(20,C/100))});m({axis:A.call(T().scale(L).tickValues([1,.1,.01,.001,1e-4,Be]).tickFormat(v(" "))),showline:true,color:"black",fontsize:Math.max(12,Math.min(20,U/100))});_.attr("transform","translate("+(x+k)+","+f+")");I.attr("d",(t=>{const e=[];for(let n=0;n<t.samples.length;n++){const r=t.samples[n];e.push((n==0?"M":"L")+" "+S(r.date)+" "+L(r.maf))}return e.join(" ")}));if($e){j.attr("cx",(t=>S(t.date))).attr("cy",(t=>L(t.maf))).attr("r",(t=>Math.sqrt(z(t.coverage))))}N.attr("transform","translate("+(x+k+C+n+5)+","+f+")");N.selectAll("*").remove();let r=F;if($e){N.append("circle").attr("r",F).attr("cx",F).attr("cy",r).attr("fill","#ccc");N.append("text").text(1).attr("x",F*2+10).attr("y",r).attr("font-size",10).attr("dominant-baseline","central");r+=5+F+n;N.append("circle").attr("r",n).attr("cx",n).attr("cy",r).attr("fill","#ccc");N.append("text").text(s).attr("x",n*2+10).attr("y",r).attr("font-size",15).attr("dominant-baseline","central");r+=15+n}const a=12;for(const t of o){N.append("line").attr("x2",30).attr("y1",r).attr("y2",r).attr("stroke",t.color);if($e){N.append("circle").attr("cx",15).attr("cy",r).attr("r",8).attr("fill",t.color).attr("fill-opacity",.1)}N.append("text").text(t.gene).attr("dominant-baseline","central").attr("font-size",a).attr("x",30+10).attr("y",r).attr("fill",t.color).style("cursor","default").on("mouseover",(e=>{e.target.setAttribute("font-weight","bold");I.filter((e=>e.mutationname==t.mutationname)).attr("stroke-width",3)})).on("mouseout",(e=>{e.target.setAttribute("font-weight","normal");I.filter((e=>e.mutationname==t.mutationname)).attr("stroke-width",1)}));r+=a+10}};W(C,U);n.append("div").style("text-align","right").append("button").text("SVG").on("click",(()=>{y(l.node(),"maf-timeline")}))}function cn(t,e,n,r,a,o,i,u){n.selectAll("*").remove();const c=n.append("table");for(const n of t){const s=c.append("tr");const l=s.append("td");l.text(n.gene).style("color",n.color);const f=s.append("td");const p=f.append("input").attr("type","checkbox").style("zoom","150%").property("checked",n.show);n.checkbox=p;p.on("change",(a=>{n.show=a.target.checked;un(t,e,r)}));f.append("button").style("margin-left","5px").text("Only").on("click",(()=>{for(const e of t){e.show=false;e.checkbox.property("checked",false)}n.show=true;n.checkbox.property("checked",true);un(t,e,r)}));let d=Math.random();const g=s.append("td");const h=g.append("input").attr("type","checkbox").attr("id",d).on("change",(t=>T(1,t.target)));g.append("label").html("&nbsp;shared").attr("for",d);d=Math.random();const m=s.append("td");const v=m.append("input").attr("type","checkbox").attr("id",d).on("change",(t=>T(2,t.target)));m.append("label").html("&nbsp;rising").attr("for",d);d=Math.random();const y=s.append("td");const x=y.append("input").attr("type","checkbox").attr("id",d).on("change",(t=>T(3,t.target)));y.append("label").html("&nbsp;falling").attr("for",d);d=Math.random();const b=s.append("td");const M=b.append("input").attr("type","checkbox").attr("id",d).on("change",(t=>T(4,t.target)));b.append("label").html("&nbsp;R-only").attr("for",d);if(n.subidx==1)h.property("checked",true);if(n.subidx==2)v.property("checked",true);if(n.subidx==3)x.property("checked",true);if(n.subidx==4)M.property("checked",true);const T=(e,r)=>{if(!r.checked){n.subidx=-1}else{n.subidx=e;if(e==1){v.property("checked",false);x.property("checked",false);M.property("checked",false)}else if(e==2){h.property("checked",false);x.property("checked",false);M.property("checked",false)}else if(e==3){h.property("checked",false);v.property("checked",false);M.property("checked",false)}else{h.property("checked",false);v.property("checked",false);x.property("checked",false)}}on(t,a,o,i,u)}}}export{en as default};

package/dist/matrix-1190d4b3.js

@@ -0,0 +1 @@
+export{M as Matrix,c as componentInit,g as getPlotConfig,a as makeChartBtnMenu,m as matrixInit,s as setComputedConfig}from"./matrix-bc0ccf83.js";import"./app-488d9fd6.js";import"./termsetting-c12f1c69.js";import"./tslib.es6-c3c2d88f.js";import"path";import"./table-10183501.js";import"./pointer-c7475677.js";import"./controls.config-9870bdea.js";import"./checkbox-96437f4d.js";import"./recover-edcdde38.js";import"./FilterRxComp-cb149666.js";import"./partjson.esm-b3f1fc21.js";import"./termdb.bins-06fd21c1.js";import"./FilterStateless-bdd1416d.js";import"./app-5aa892cb.js";import"./termInfo-4d954045.js";import"./toggleButtons-bb9aca2f.js";import"./genesearch-d8780180.js";import"./rehydrateFilter-12d118cb.js";import"./radiobutton-09bff425.js";import"./axis-747c801e.js";import"./legacy-d3-polyfill-bdb2d792.js";import"./filter-67d51c09.js";import"./svg.legend-21629769.js";