@sjcrh/proteinpaint-client 2.225.0 → 2.227.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-B34EJADN.js +1362 -0
- package/dist/AggMatrixInput-USCXGZT2.js +402 -0
- package/dist/AggregateMatrix-VLCSBD65.js +37 -0
- package/dist/AppHeader-KE7QVEW5.js +826 -0
- package/dist/BoxPlot-3H5QKYRD.js +1247 -0
- package/dist/CorrelationVolcano-ACEJOJS6.js +613 -0
- package/dist/CorrelationVolcano-ACEJOJS6.js.map +7 -0
- package/dist/Cuminc-6LPS4LR7.js +1217 -0
- package/dist/DE-TTKEQYC7.js +85 -0
- package/dist/DEinput-W7WEO2NO.js +483 -0
- package/dist/DEinput-W7WEO2NO.js.map +7 -0
- package/dist/DM-2TUF6Q3C.js +86 -0
- package/dist/DifferentialAnalysis-3LP4RAWF.js +236 -0
- package/dist/Disco-UP5C7UWX.js +3445 -0
- package/dist/Disco.UI-V4I4LOMF.js +239 -0
- package/dist/DmrPlot-TZR2NGIH.js +366 -0
- package/dist/GB-4NRY4YMF.js +1388 -0
- package/dist/GB-4NRY4YMF.js.map +7 -0
- package/dist/GSEA-YGKBRJJO.js +870 -0
- package/dist/GeneExpInput-L3J2ECVQ.js +38 -0
- package/dist/Geomap-4MHU6F57.js +80 -0
- package/dist/HicApp-27VGP5F6.js +2240 -0
- package/dist/IDCViewer-37GJPPUY.js +10810 -0
- package/dist/NumBinaryEditor-SEC2NDGG.js +274 -0
- package/dist/NumBinaryEditor.unit.spec-UDYSUC4S.js +308 -0
- package/dist/NumContEditor-YPSYWU2A.js +100 -0
- package/dist/NumContEditor.unit.spec-NHFBMHQ5.js +160 -0
- package/dist/NumCustomBinEditor-N7US5Q64.js +29 -0
- package/dist/NumCustomBinEditor.unit.spec-2BMMUBYU.js +393 -0
- package/dist/NumDiscreteEditor-BLQ5DEB7.js +165 -0
- package/dist/NumDiscreteEditor.unit.spec-JOFPUFU5.js +229 -0
- package/dist/NumRegularBinEditor-7BFPBUW2.js +29 -0
- package/dist/NumRegularBinEditor.unit.spec-6GZMNRHA.js +274 -0
- package/dist/NumSplineEditor-LO3ZR3T3.js +205 -0
- package/dist/NumSplineEditor.unit.spec-MRA3DQSB.js +220 -0
- package/dist/NumericDensity-NUCVJZ74.js +29 -0
- package/dist/NumericDensity.unit.spec-TZLKWH4U.js +414 -0
- package/dist/NumericHandler-NH533VBN.js +30 -0
- package/dist/NumericHandler.unit.spec-V7MNEHML.js +225 -0
- package/dist/ProteomeInput-FEXWZOA2.js +610 -0
- package/dist/Regression-NJAPUGT7.js +1412 -0
- package/dist/RunChart2-QIJ6NUWY.js +744 -0
- package/dist/SC-5NWBVOEE.js +1290 -0
- package/dist/Violin-TMACI43Q.js +1105 -0
- package/dist/Volcano-BMLHQEXU.js +2745 -0
- package/dist/Volcano-BMLHQEXU.js.map +7 -0
- package/dist/Wsi-5TWAOBFG.js +650 -0
- package/dist/Wsi-5TWAOBFG.js.map +7 -0
- package/dist/aboutSunburst-53YAWTV5.js +93 -0
- package/dist/adSandbox-7VHXEI7W.js +29 -0
- package/dist/animatedBubbleChart-CTFGJIRR.js +542 -0
- package/dist/app-AQAQAPUN.js +38 -0
- package/dist/app-SZDIV5U4.js +28 -0
- package/dist/app.js +12 -12
- package/dist/bam-3U5R2KNC.js +872 -0
- package/dist/barchart-ZL5VSR7P.js +38 -0
- package/dist/barchart2-YELP2HI7.js +305 -0
- package/dist/block-AGX6Z4BR.js +6208 -0
- package/dist/block-AGX6Z4BR.js.map +7 -0
- package/dist/block.init-IBITFICI.js +29 -0
- package/dist/block.mds.expressionrank-4L76ILD4.js +350 -0
- package/dist/block.mds.geneboxplot-XA7DFHPV.js +819 -0
- package/dist/block.mds.junction-GTZD3HEN.js +1534 -0
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- package/dist/block.tk.aicheck-CV53ULEP.js +274 -0
- package/dist/block.tk.bam-KJYFNJCX.js +1906 -0
- package/dist/block.tk.bigwig.ui-A352D6PT.js +202 -0
- package/dist/block.tk.hicstraw-QAFTQESL.js +814 -0
- package/dist/block.tk.junction-XURB4RWZ.js +2353 -0
- package/dist/block.tk.junction.textmatrixui-RNRWWNGY.js +190 -0
- package/dist/block.tk.ld-GWJMVPX3.js +90 -0
- package/dist/block.tk.menu-BJZYFMQX.js +1050 -0
- package/dist/block.tk.pgv-7XNJTHEW.js +934 -0
- package/dist/brainImaging-37EDZLGN.js +550 -0
- package/dist/brainRegions-FEW52QUB.js +213 -0
- package/dist/bubbleHeatmap-YN34AA4H.js +374 -0
- package/dist/bubbleHeatmap-YN34AA4H.js.map +7 -0
- package/dist/cellTypeBubbleHeatmap-X4K63FOK.js +274 -0
- package/dist/cellTypeBubbleHeatmap-X4K63FOK.js.map +7 -0
- package/dist/chunk-24CVFDVW.js +1219 -0
- package/dist/chunk-24CVFDVW.js.map +7 -0
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- package/dist/chunk-JI632MAR.js.map +7 -0
- package/dist/chunk-JKPMBNRM.js +100 -0
- package/dist/chunk-JKPMBNRM.js.map +7 -0
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- package/dist/chunk-VPRP24DY.js.map +7 -0
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- package/dist/chunk-ZO7KUAIF.js +5258 -0
- package/dist/chunk-ZO7KUAIF.js.map +7 -0
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- package/dist/cohort-NKRTCX5Z.js +66 -0
- package/dist/cohortSunburst-DFJW6WXU.js +402 -0
- package/dist/condition-PYFOEVX5.js +323 -0
- package/dist/controls-RVNIN66W.js +30 -0
- package/dist/controls.config-XVEYYBI4.js +30 -0
- package/dist/correlation-MNL4DGSW.js +91 -0
- package/dist/customdata.inputui-WFIIJATQ.js +280 -0
- package/dist/dataDownload-CMSP5FA4.js +326 -0
- package/dist/databrowser.ui-FYZPXXEJ.js +424 -0
- package/dist/dictionary-76BXY6WU.js +109 -0
- package/dist/dnaMethylation-WTIJVNIU.js +29 -0
- package/dist/dnaMethylation.integration.spec-YXQEFLC5.js +194 -0
- package/dist/dnaMethylation.unit.spec-22FLJWVB.js +95 -0
- package/dist/dnaMethylation.unit.spec-22FLJWVB.js.map +7 -0
- package/dist/dofetch-XID2XEJT.js +49 -0
- package/dist/e2pca-DD6DA7X3.js +340 -0
- package/dist/ep-S4PI4AUJ.js +1247 -0
- package/dist/expclust.gdc.spec-BDV4RJO6.js +298 -0
- package/dist/facet-EOXEW2LN.js +556 -0
- package/dist/gb-AKE7RDPB.js +77 -0
- package/dist/geneExpClustering-73ED7HIN.js +240 -0
- package/dist/geneExpression-AEJILDKJ.js +29 -0
- package/dist/geneExpression-NXDXXKEA.js +309 -0
- package/dist/geneExpression.unit.spec-VUJWR4TA.js +150 -0
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- package/dist/geneORA-7KFQ4PW2.js +269 -0
- package/dist/geneRanking-RKJU4PM2.js +544 -0
- package/dist/geneVariant-2AGC3ECG.js +32 -0
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- package/dist/geneVariant.integration.spec-UJXGQEZG.js +672 -0
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- package/dist/geneset-BU6V3CB5.js +199 -0
- package/dist/genomeBrowser.spec-BGQHJZKH.js +272 -0
- package/dist/grin2-OUZN5LOU.js +66 -0
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- package/dist/hierCluster-3ERW47JJ.js +51 -0
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- package/dist/isoformExpression-K5BCDJLL.js +31 -0
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- package/dist/matrix.groups-3UH2KOIY.js +25 -0
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- /package/dist/{spliceevent.exonskip.diagram-WLLTP7NP.js.map → spliceevent.exonskip.diagram-HBXQOUT4.js.map} +0 -0
- /package/dist/{spliceevent.noeventdiagram-NOSO752Y.js.map → spliceevent.noeventdiagram-ORQJ62ON.js.map} +0 -0
- /package/dist/{ssGSEA-4DVY6Z5U.js.map → ssGSEA-PLDZ2556.js.map} +0 -0
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- /package/dist/{stattable-T5X76Q32.js.map → stattable-GVRVRO2Y.js.map} +0 -0
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- /package/dist/{summarizeCnvGeneexp-ST36TPEJ.js.map → summarizeCnvGeneexp-7WSJTWKH.js.map} +0 -0
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import {
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HandlerBase,
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make_one_checkbox
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import {
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get_bin_label,
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get_bin_range_equation
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import {
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toStoredUnit,
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toUserUnit
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// termsetting/handlers/NumBinaryEditor.ts
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var NumBinaryEditor = class extends HandlerBase {
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constructor(opts, handler) {
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super(opts);
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/* the cutoff is stored in the term's own unit but entered and shown in its user-facing one.
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both are identity functions unless the term declares valueConversion{} */
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toDisplay(v) {
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async showEditMenu(div) {
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this.dom.density_div = div.append("div");
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await this.handler.density.showViolin(this.dom.density_div);
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await this.handler.density.setBinLines(this.getBoundaryOpts());
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this.dom.boundaryInclusionDiv = div.append("div").style("padding", "5px");
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getDefaultQ() {
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const { min, max } = this.handler.density_data;
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const defaultCustomBoundary = (
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/* when no sample is annotated by this term,
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minvalue and maxvalue are both null
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setting defaultCustomBoundary to arbitrary "0" will allow existing UI to work
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but remains to be evaluated if is really okay to use 0
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*/
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!Number.isFinite(min) || !Number.isFinite(max) ? 0 : (
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)
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const firstBin = {
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};
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const lastBin = {
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return {
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mode: "binary",
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type: "custom-bin",
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lst: [
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{
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...firstBin,
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label: get_bin_label(firstBin, this.tw.q, this.tw.term.valueConversion),
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range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
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},
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{
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...lastBin,
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label: get_bin_label(lastBin, this.tw.q, this.tw.term.valueConversion),
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range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
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}
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//satisfies StopUnboundedBin
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],
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cutoffType: "normal"
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};
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}
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getBoundaryOpts() {
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return {
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values: [
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{
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//this.q.lst[0].map(bin => ({ x: bin.startunbounded ? bin.stop : bin.start, isDraggable: true })),
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isDraggable: true
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}
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],
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// the dragged value arrives in display units, matching what the cutoff <input> shows
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callback: (d, value) => {
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this.q.lst[0].stop = this.toStored(value);
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this.q.lst[1].start = this.toStored(value);
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this.dom.cutoffInput.property("value", value);
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this.q.lst = this.processBinaryBinInputs();
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this.dom.customBinRanges.data(this.q.lst).html((d2) => d2.range);
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this.dom.customBinLabelInput.data(this.q.lst).property("value", (d2) => d2.label);
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}
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};
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}
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getBoundaryInclusion() {
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return this.q.lst[0].startinclusive ? "startinclusive" : "stopinclusive";
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}
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renderBoundaryInclusionSelect() {
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this.dom.boundaryInclusionDiv.selectAll("*").remove();
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this.dom.boundaryInclusionDiv.append("span").style("padding", "5px").style("color", "rgb(136, 136, 136)").html("Boundary Inclusion");
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const x = '<span style="font-family:Times;font-style:italic">x</span>';
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this.dom.boundaryInclusionSelect = this.dom.boundaryInclusionDiv.append("select").style("margin-left", "10px").on("change", () => {
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this.renderBoundaryInputDivs();
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});
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this.dom.boundaryInclusionSelect.selectAll("option").data([
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{ value: "stopinclusive", html: `start < ${x} ≤ end` },
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{ value: "startinclusive", html: `start ≤ ${x} < end` }
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]).enter().append("option").property("value", (d) => d.value).property("selected", (d) => this.tw.q.lst?.[0]?.[d.value] == true).html((d) => d.html);
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}
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async renderCutoffInput() {
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this.dom.cutoff_div.append("span").style("margin-right", "5px").style("opacity", 0.5).text("Boundary value");
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const q = this.q;
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this.dom.cutoffInput = this.dom.cutoff_div.append("input").style("width", "100px").attr("type", "number").style("margin-right", "10px").attr("value", this.toDisplay(q.lst[0].stop)).on("change", () => this.renderBoundaryInputDivs());
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this.dom.cutoffPercentileCheckbox = make_one_checkbox({
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holder: this.dom.cutoff_div,
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labeltext: "Use percentile",
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checked: false,
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divstyle: { display: "inline-block" },
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callback: async (checked) => {
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this.dom.cutoffInput.property("disabled", checked == true);
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this.dom.cutoffInputPercentile.style("display", checked ? "" : "none");
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this.handlePercentileChange();
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}
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});
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this.dom.cutoffInputPercentile = this.dom.cutoff_div.append("input").attr("type", "number").attr("value", this.cutoffPercentile).style("display", "none").style("width", "100px").style("margin-right", "10px").on("change", () => this.handlePercentileChange());
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}
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async handlePercentileChange() {
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try {
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const cutoffPercentile = Number(this.dom.cutoffInputPercentile.property("value"));
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this.q.cutoffPercentile = cutoffPercentile;
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const data = await this.termsetting.vocabApi.getPercentile(
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this.tw.term,
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[cutoffPercentile],
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this.termsetting.vocabApi.state?.termfilter
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|
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);
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this.dom.cutoffInput.property("value", this.toDisplay(data.values[0]));
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|
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this.renderBoundaryInputDivs();
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191
|
-
} catch (e) {
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|
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console.error(e);
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}
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|
-
}
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|
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renderBoundaryInputDivs() {
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const cutoff = this.toStored(this.dom.cutoffInput.property("value"));
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|
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this.q.lst[0].stop = cutoff;
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this.q.lst[1].start = cutoff;
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this.q.lst = this.processBinaryBinInputs();
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const data = this.q.lst;
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const holder = this.dom.inputsDiv;
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|
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holder.selectAll("*").remove();
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|
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const grid = holder.append("div").style("display", "grid").style("grid-template-columns", "auto auto").style("column-gap", "20px").style("align-items", "center");
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grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Range");
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|
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grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Bin label");
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for (const d of data) {
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|
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grid.append("div").datum(d).attr("name", "range").html(d.range);
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|
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grid.append("div").append("input").datum(d).attr("type", "text").style("margin", "2px 0px").property("value", d.label).on("change", function() {
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d.label = this.value;
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});
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|
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}
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|
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this.dom.customBinRanges = this.dom.inputsDiv.selectAll('div[name="range"]');
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|
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this.dom.customBinLabelInput = this.dom.inputsDiv.selectAll("input");
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|
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this.handler.density.setBinLines(this.getBoundaryOpts());
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|
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}
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|
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processBinaryBinInputs() {
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const inclusive = this.dom.boundaryInclusionSelect.property("value");
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|
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const startinclusive = inclusive == "startinclusive";
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const stopinclusive = inclusive == "stopinclusive";
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const val = this.q.lst[0].stop;
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if (!val && val !== 0) throw "val is undefined";
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const firstBin = {
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startunbounded: true,
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stop: Number(val),
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startinclusive: false,
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stopinclusive
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};
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const lastBin = {
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start: Number(val),
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startinclusive,
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stopinclusive: false,
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stopunbounded: true
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};
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const bins = [
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{
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...firstBin,
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label: get_bin_label(firstBin, this.q, this.tw.term.valueConversion),
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range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
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},
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{
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...lastBin,
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label: get_bin_label(lastBin, this.q, this.tw.term.valueConversion),
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|
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range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
|
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|
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}
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|
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];
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|
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return bins;
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|
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}
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|
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getEditedQ(destroyDom = true) {
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|
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const lst = this.processBinaryBinInputs();
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if (destroyDom) {
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|
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for (const name of Object.keys(this.dom)) {
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this.dom[name].remove();
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delete this.dom[name];
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|
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}
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|
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}
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return {
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mode: "binary",
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|
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type: "custom-bin",
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lst
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|
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};
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}
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|
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async undoEdits() {
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|
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this.q = this.getDefaultQ();
|
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|
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await this.handler.density.setBinLines(this.getBoundaryOpts());
|
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|
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this.dom.inputsDiv.selectAll("*").remove();
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|
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this.renderBoundaryInclusionSelect();
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|
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this.renderCutoffInput();
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|
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this.renderBoundaryInputDivs();
|
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|
-
}
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|
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};
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|
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export {
|
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|
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NumBinaryEditor
|
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|
-
};
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|
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//# sourceMappingURL=NumBinaryEditor-YFQDPBB6.js.map
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|
@@ -1,308 +0,0 @@
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1
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import {
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2
|
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sleep
|
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3
|
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} from "./chunk-WA3C3A2M.js";
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|
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import {
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5
|
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agedx
|
|
6
|
-
} from "./chunk-32AI7I4C.js";
|
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|
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import {
|
|
8
|
-
termjson
|
|
9
|
-
} from "./chunk-CWWE77DH.js";
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|
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import {
|
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|
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require_tape
|
|
12
|
-
} from "./chunk-PJYCTAMC.js";
|
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|
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import {
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|
14
|
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NumericHandler
|
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15
|
-
} from "./chunk-3UXHTSZJ.js";
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import "./chunk-E4WAVMI5.js";
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import {
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TwRouter
|
|
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-
} from "./chunk-OOVVKQSD.js";
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import "./chunk-HJ6L54YS.js";
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import "./chunk-QRZRAMHA.js";
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import "./chunk-CNFTQSNE.js";
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import "./chunk-DOC3HBOV.js";
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|
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import "./chunk-TVJOSRCH.js";
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import "./chunk-3CIL7KH7.js";
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import "./chunk-HGC4EON3.js";
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import "./chunk-QFQJO7LD.js";
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|
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import "./chunk-2N345NXD.js";
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|
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import "./chunk-HBNB5TRH.js";
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|
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import "./chunk-PF4DSFDR.js";
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|
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import "./chunk-4OLM3KSB.js";
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|
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import "./chunk-PWYMHUXY.js";
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|
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import "./chunk-TLT4YIG3.js";
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|
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|
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import "./chunk-5R63Q5KH.js";
|
|
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|
-
import {
|
|
39
|
-
select_default
|
|
40
|
-
} from "./chunk-I6Y4O3RR.js";
|
|
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|
-
import "./chunk-Q5RDQNIT.js";
|
|
42
|
-
import {
|
|
43
|
-
__toESM
|
|
44
|
-
} from "./chunk-HS5PO5ZQ.js";
|
|
45
|
-
|
|
46
|
-
// termsetting/handlers/test/NumBinaryEditor.unit.spec.ts
|
|
47
|
-
var import_tape = __toESM(require_tape(), 1);
|
|
48
|
-
var pct50 = 6.3475409836;
|
|
49
|
-
var pct70 = 1000.36986301355;
|
|
50
|
-
var DAY_TO_YEAR = 1 / 365.25;
|
|
51
|
-
function getConvertedTerm() {
|
|
52
|
-
const term = JSON.parse(JSON.stringify(termjson.agedx));
|
|
53
|
-
term.valueConversion = { fromUnit: "day", toUnit: "year", scaleFactor: DAY_TO_YEAR };
|
|
54
|
-
return term;
|
|
55
|
-
}
|
|
56
|
-
async function getNumericHandler(opts = {}) {
|
|
57
|
-
const term = opts.term || JSON.parse(JSON.stringify(termjson.agedx));
|
|
58
|
-
const rawTw = {
|
|
59
|
-
term,
|
|
60
|
-
q: {
|
|
61
|
-
mode: "binary"
|
|
62
|
-
}
|
|
63
|
-
};
|
|
64
|
-
let handler = {};
|
|
65
|
-
const vocabApi = {
|
|
66
|
-
state: {
|
|
67
|
-
termfilter: { filter: { type: "tvslst", in: "", lst: [] } }
|
|
68
|
-
},
|
|
69
|
-
getViolinBox() {
|
|
70
|
-
return agedx;
|
|
71
|
-
},
|
|
72
|
-
getPercentile() {
|
|
73
|
-
return {
|
|
74
|
-
values: handler?.editHandler?.q.cutoffPercentile === 70 ? [pct70] : [pct50]
|
|
75
|
-
};
|
|
76
|
-
}
|
|
77
|
-
};
|
|
78
|
-
const tw = await TwRouter.initRaw(rawTw, { vocabApi });
|
|
79
|
-
handler = new NumericHandler({
|
|
80
|
-
termsetting: {
|
|
81
|
-
tw,
|
|
82
|
-
term: rawTw.term,
|
|
83
|
-
q: rawTw.q,
|
|
84
|
-
opts: {
|
|
85
|
-
numericEditMenuVersion: ["binary"],
|
|
86
|
-
usecase: opts.usecase
|
|
87
|
-
},
|
|
88
|
-
api: {
|
|
89
|
-
runCallback() {
|
|
90
|
-
}
|
|
91
|
-
},
|
|
92
|
-
dom: {
|
|
93
|
-
tip: {
|
|
94
|
-
hide() {
|
|
95
|
-
}
|
|
96
|
-
}
|
|
97
|
-
},
|
|
98
|
-
vocabApi
|
|
99
|
-
}
|
|
100
|
-
});
|
|
101
|
-
handler.density_data = { min: 0, max: 100 };
|
|
102
|
-
const holder = select_default("body").append("div").style("position", "relative").style("width", "fit-content").style("margin", "20px").style("padding", "5px").style("border", "1px solid #000");
|
|
103
|
-
handler.dom.editDiv = holder;
|
|
104
|
-
await handler.setEditHandler(handler.tabs[0]);
|
|
105
|
-
return {
|
|
106
|
-
rawTw,
|
|
107
|
-
tw,
|
|
108
|
-
handler,
|
|
109
|
-
editHandler: handler.editHandler,
|
|
110
|
-
holder,
|
|
111
|
-
destroy: () => {
|
|
112
|
-
if ("destroy" in handler.editHandler) handler.editHandler.destroy();
|
|
113
|
-
if (typeof handler.destroy == "function") handler.destroy();
|
|
114
|
-
holder.remove();
|
|
115
|
-
}
|
|
116
|
-
};
|
|
117
|
-
}
|
|
118
|
-
(0, import_tape.default)("\n", (test) => {
|
|
119
|
-
test.comment("-***- NumBinaryEditor.unit.spec -***-");
|
|
120
|
-
test.end();
|
|
121
|
-
});
|
|
122
|
-
(0, import_tape.default)("handler methods", async (test) => {
|
|
123
|
-
const { editHandler, destroy } = await getNumericHandler();
|
|
124
|
-
editHandler.termsetting.tw.q = { mode: "continuous" };
|
|
125
|
-
test.deepEqual(
|
|
126
|
-
await editHandler.getDefaultQ(),
|
|
127
|
-
{
|
|
128
|
-
mode: "binary",
|
|
129
|
-
type: "custom-bin",
|
|
130
|
-
lst: [
|
|
131
|
-
{
|
|
132
|
-
startunbounded: true,
|
|
133
|
-
startinclusive: false,
|
|
134
|
-
stopinclusive: false,
|
|
135
|
-
stop: 50,
|
|
136
|
-
label: "<50",
|
|
137
|
-
range: '<span style="font-family:Times;font-style:italic;">x</span> <50'
|
|
138
|
-
},
|
|
139
|
-
{
|
|
140
|
-
stopunbounded: true,
|
|
141
|
-
startinclusive: true,
|
|
142
|
-
stopinclusive: false,
|
|
143
|
-
start: 50,
|
|
144
|
-
label: "\u226550",
|
|
145
|
-
range: '<span style="font-family:Times;font-style:italic;">x</span> \u226550'
|
|
146
|
-
}
|
|
147
|
-
],
|
|
148
|
-
cutoffType: "normal"
|
|
149
|
-
},
|
|
150
|
-
"should give the expected defaultQ"
|
|
151
|
-
);
|
|
152
|
-
if (test._ok) destroy();
|
|
153
|
-
test.end();
|
|
154
|
-
});
|
|
155
|
-
(0, import_tape.default)("initial rendered UI", async (test) => {
|
|
156
|
-
const { editHandler, holder, destroy } = await getNumericHandler();
|
|
157
|
-
await editHandler.showEditMenu(holder);
|
|
158
|
-
test.equal(editHandler.dom?.density_div.selectAll("svg").size(), 1, `should render a density plot svg`);
|
|
159
|
-
test.equal(
|
|
160
|
-
editHandler.dom.boundaryInclusionDiv.selectAll("option").size(),
|
|
161
|
-
2,
|
|
162
|
-
`should render a boundary inclusion dropdown with 2 options`
|
|
163
|
-
);
|
|
164
|
-
test.equal(
|
|
165
|
-
editHandler.dom.cutoff_div.selectAll(`input[type='number']`).size(),
|
|
166
|
-
2,
|
|
167
|
-
`should render cutoff inputs, absolute and in percentile`
|
|
168
|
-
);
|
|
169
|
-
test.equal(
|
|
170
|
-
editHandler.dom.cutoff_div.selectAll(`input[type='checkbox']`).size(),
|
|
171
|
-
1,
|
|
172
|
-
`should render cutoff option for percentile`
|
|
173
|
-
);
|
|
174
|
-
test.equal(editHandler.dom.cutoffInputPercentile.style("display"), "none", `should hide percentile input by default`);
|
|
175
|
-
editHandler.dom.cutoffPercentileCheckbox.property("checked", true);
|
|
176
|
-
editHandler.dom.cutoffPercentileCheckbox.node().dispatchEvent(new Event("input", { bubbles: true }));
|
|
177
|
-
await sleep(0);
|
|
178
|
-
test.equal(
|
|
179
|
-
editHandler.dom.cutoffInputPercentile.style("display"),
|
|
180
|
-
"inline-block",
|
|
181
|
-
`should show the percentile input when the checkbox is checked`
|
|
182
|
-
);
|
|
183
|
-
test.equal(
|
|
184
|
-
editHandler.dom.cutoffInputPercentile.property("value"),
|
|
185
|
-
"50",
|
|
186
|
-
`should default to 50% percentile input value`
|
|
187
|
-
);
|
|
188
|
-
const newCutoff = 6.3475409836;
|
|
189
|
-
const ranges = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
|
|
190
|
-
test.equal(ranges[0].innerText, `x \u2264${newCutoff}`, `should render the expected first bin range`);
|
|
191
|
-
test.equal(ranges[1].innerText, `x >${newCutoff}`, `should render the expected last bin range`);
|
|
192
|
-
const binInputs = editHandler.dom.inputsDiv.node().querySelectorAll("input");
|
|
193
|
-
test.equal(binInputs[0].value, `\u2264${newCutoff}`, `should render the expected first bin input value`);
|
|
194
|
-
test.equal(binInputs[1].value, `>${newCutoff}`, `should render the expected last bin input value`);
|
|
195
|
-
if (test._ok) destroy();
|
|
196
|
-
test.end();
|
|
197
|
-
});
|
|
198
|
-
(0, import_tape.default)("cutoff interactivity", async (test) => {
|
|
199
|
-
const { editHandler, holder, destroy } = await getNumericHandler();
|
|
200
|
-
await editHandler.showEditMenu(holder);
|
|
201
|
-
const lines = editHandler.handler.density.dom.binsize_g.selectAll("line");
|
|
202
|
-
test.equal(lines.size(), 1, `should render only one draggable line in the density plot`);
|
|
203
|
-
const line = lines.node();
|
|
204
|
-
const x1 = Number(line.getAttribute("x1"));
|
|
205
|
-
editHandler.dom.boundaryInclusionSelect.property("value", "startinclusive");
|
|
206
|
-
editHandler.dom.boundaryInclusionSelect.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
207
|
-
const newCutoff = 500;
|
|
208
|
-
editHandler.dom.cutoffInput.property("value", newCutoff);
|
|
209
|
-
editHandler.dom.cutoffInput.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
210
|
-
const ranges = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
|
|
211
|
-
test.equal(ranges[0].innerText, `x <${newCutoff}`, `should render the expected first bin range`);
|
|
212
|
-
test.equal(ranges[1].innerText, `x \u2265${newCutoff}`, `should render the expected last bin range`);
|
|
213
|
-
const binInputs = editHandler.dom.inputsDiv.node().querySelectorAll("input");
|
|
214
|
-
test.equal(binInputs[0].value, `<${newCutoff}`, `should render the expected first bin input value`);
|
|
215
|
-
test.equal(binInputs[1].value, `\u2265${newCutoff}`, `should render the expected last bin input value`);
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216
|
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const line2 = editHandler.handler.density.dom.binsize_g.select("line").node();
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217
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test.true(x1 <= Number(line2.getAttribute("x1")), "should trigger the density line to move to the right");
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218
|
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editHandler.dom.cutoffPercentileCheckbox.property("checked", true);
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219
|
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editHandler.dom.cutoffPercentileCheckbox.node().dispatchEvent(new Event("input", { bubbles: true }));
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editHandler.dom.cutoffInputPercentile.property("value", 70);
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221
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editHandler.dom.cutoffInputPercentile.node().dispatchEvent(new Event("change", { bubbles: true }));
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222
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await sleep(0);
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223
|
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{
|
|
224
|
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const lines2 = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
|
|
225
|
-
test.deepEqual(
|
|
226
|
-
lines2.map((l) => l.getAttribute("x1")),
|
|
227
|
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["116"],
|
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228
|
-
`should re-render a draggable line in the updated x-position`
|
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229
|
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);
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230
|
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const ranges2 = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
|
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231
|
-
test.equal(ranges2[0].innerText, `x <${pct70}`, `should render the expected first bin range`);
|
|
232
|
-
test.equal(ranges2[1].innerText, `x \u2265${pct70}`, `should render the expected last bin range`);
|
|
233
|
-
const binInputs2 = editHandler.dom.inputsDiv.node().querySelectorAll("input");
|
|
234
|
-
test.equal(binInputs2[0].value, `<${pct70}`, `should render the expected first bin input value`);
|
|
235
|
-
test.equal(binInputs2[1].value, `\u2265${pct70}`, `should render the expected last bin input value`);
|
|
236
|
-
}
|
|
237
|
-
test.deepEqual(
|
|
238
|
-
editHandler.getEditedQ(false),
|
|
239
|
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{
|
|
240
|
-
mode: "binary",
|
|
241
|
-
type: "custom-bin",
|
|
242
|
-
lst: [
|
|
243
|
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{
|
|
244
|
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startunbounded: true,
|
|
245
|
-
stop: pct70,
|
|
246
|
-
startinclusive: false,
|
|
247
|
-
stopinclusive: false,
|
|
248
|
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label: `<${pct70}`,
|
|
249
|
-
range: `<span style="font-family:Times;font-style:italic;">x</span> <${pct70}`
|
|
250
|
-
},
|
|
251
|
-
{
|
|
252
|
-
start: pct70,
|
|
253
|
-
startinclusive: true,
|
|
254
|
-
stopinclusive: false,
|
|
255
|
-
stopunbounded: true,
|
|
256
|
-
label: `\u2265${pct70}`,
|
|
257
|
-
range: `<span style="font-family:Times;font-style:italic;">x</span> \u2265${pct70}`
|
|
258
|
-
}
|
|
259
|
-
]
|
|
260
|
-
},
|
|
261
|
-
`should give the expected edited q object`
|
|
262
|
-
);
|
|
263
|
-
const density_div = editHandler.dom.density_div.node();
|
|
264
|
-
await editHandler.showEditMenu(holder);
|
|
265
|
-
test.equal(
|
|
266
|
-
density_div,
|
|
267
|
-
editHandler.dom.density_div.node(),
|
|
268
|
-
`should not re-render the menu when the holder has not changed`
|
|
269
|
-
);
|
|
270
|
-
await editHandler.undoEdits();
|
|
271
|
-
await sleep(0);
|
|
272
|
-
{
|
|
273
|
-
const lines2 = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
|
|
274
|
-
test.deepEqual(
|
|
275
|
-
lines2.map((l) => l.getAttribute("x1")),
|
|
276
|
-
["11"],
|
|
277
|
-
`should render a draggable line in the expected x-position`
|
|
278
|
-
);
|
|
279
|
-
}
|
|
280
|
-
if (test._ok) destroy();
|
|
281
|
-
test.end();
|
|
282
|
-
});
|
|
283
|
-
(0, import_tape.default)("converted term", async (test) => {
|
|
284
|
-
const { editHandler, holder, destroy } = await getNumericHandler({ term: getConvertedTerm() });
|
|
285
|
-
await editHandler.showEditMenu(holder);
|
|
286
|
-
test.equal(
|
|
287
|
-
editHandler.dom.cutoffInput.property("value"),
|
|
288
|
-
String(Number((pct50 * DAY_TO_YEAR).toFixed(2))),
|
|
289
|
-
`should fill the cutoff input in years`
|
|
290
|
-
);
|
|
291
|
-
editHandler.dom.cutoffInput.property("value", 5);
|
|
292
|
-
editHandler.dom.cutoffInput.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
293
|
-
const editedQ = editHandler.getEditedQ(false);
|
|
294
|
-
test.deepEqual(
|
|
295
|
-
[editedQ.lst[0].stop, editedQ.lst[1].start],
|
|
296
|
-
[1826.25, 1826.25],
|
|
297
|
-
`should store a cutoff typed in years as days`
|
|
298
|
-
);
|
|
299
|
-
test.deepEqual(
|
|
300
|
-
editedQ.lst.map((bin) => bin.label),
|
|
301
|
-
// the default boundary inclusion is stopinclusive
|
|
302
|
-
["\u22645y", ">5y"],
|
|
303
|
-
`should label the two bins in years`
|
|
304
|
-
);
|
|
305
|
-
if (test._ok) destroy();
|
|
306
|
-
test.end();
|
|
307
|
-
});
|
|
308
|
-
//# sourceMappingURL=NumBinaryEditor.unit.spec-6YC5PCPK.js.map
|
|
@@ -1,100 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
HandlerBase,
|
|
3
|
-
make_one_checkbox
|
|
4
|
-
} from "./chunk-OOVVKQSD.js";
|
|
5
|
-
import "./chunk-HJ6L54YS.js";
|
|
6
|
-
import "./chunk-QRZRAMHA.js";
|
|
7
|
-
import "./chunk-CNFTQSNE.js";
|
|
8
|
-
import "./chunk-DOC3HBOV.js";
|
|
9
|
-
import "./chunk-TVJOSRCH.js";
|
|
10
|
-
import "./chunk-3CIL7KH7.js";
|
|
11
|
-
import "./chunk-T4XPCSLP.js";
|
|
12
|
-
import "./chunk-KLJM7HE5.js";
|
|
13
|
-
import "./chunk-W5J3LTYS.js";
|
|
14
|
-
import "./chunk-HGC4EON3.js";
|
|
15
|
-
import "./chunk-QFQJO7LD.js";
|
|
16
|
-
import "./chunk-2N345NXD.js";
|
|
17
|
-
import "./chunk-HBNB5TRH.js";
|
|
18
|
-
import "./chunk-PF4DSFDR.js";
|
|
19
|
-
import "./chunk-4OLM3KSB.js";
|
|
20
|
-
import "./chunk-PWYMHUXY.js";
|
|
21
|
-
import "./chunk-TLT4YIG3.js";
|
|
22
|
-
import "./chunk-5R63Q5KH.js";
|
|
23
|
-
import "./chunk-I6Y4O3RR.js";
|
|
24
|
-
import "./chunk-Q5RDQNIT.js";
|
|
25
|
-
import "./chunk-HS5PO5ZQ.js";
|
|
26
|
-
|
|
27
|
-
// termsetting/handlers/NumContEditor.ts
|
|
28
|
-
var NumContEditor = class extends HandlerBase {
|
|
29
|
-
constructor(opts, handler) {
|
|
30
|
-
super(opts);
|
|
31
|
-
this.dom = {};
|
|
32
|
-
this.termsetting = opts.termsetting;
|
|
33
|
-
this.tw = opts.termsetting.tw;
|
|
34
|
-
this.handler = handler;
|
|
35
|
-
this.q = this.setDefaultQ();
|
|
36
|
-
}
|
|
37
|
-
setDefaultQ() {
|
|
38
|
-
if (this.tw.q.mode == "continuous") return JSON.parse(JSON.stringify(this.tw.q));
|
|
39
|
-
return { mode: "continuous" };
|
|
40
|
-
}
|
|
41
|
-
async showEditMenu(div) {
|
|
42
|
-
this.tw = this.handler.tw;
|
|
43
|
-
this.q = this.setDefaultQ();
|
|
44
|
-
if (this.dom.inputsDiv) {
|
|
45
|
-
if (div.node().contains(this.dom.inputsDiv.node())) return;
|
|
46
|
-
else delete this.dom.inputsDiv;
|
|
47
|
-
}
|
|
48
|
-
this.dom.density_div = div.append("div");
|
|
49
|
-
await this.handler.density.showViolin(this.dom.density_div);
|
|
50
|
-
this.dom.inputsDiv = div.append("div");
|
|
51
|
-
this.mayShowValueconversionMsg(this.dom.inputsDiv);
|
|
52
|
-
if (this.termsetting.opts.usecase?.target == "matrix") {
|
|
53
|
-
this.dom.convert2ZCheckbox = await make_one_checkbox({
|
|
54
|
-
holder: this.dom.inputsDiv.append("div"),
|
|
55
|
-
labeltext: "Convert to Z-score",
|
|
56
|
-
checked: this.q.convert2ZScore ? true : false,
|
|
57
|
-
divstyle: { display: "inline-block", padding: "3px 10px" },
|
|
58
|
-
callback: (checked) => {
|
|
59
|
-
this.q.convert2ZScore = checked;
|
|
60
|
-
if (checked) {
|
|
61
|
-
this.dom.scaleSelect.property("value", 1);
|
|
62
|
-
delete this.q.scale;
|
|
63
|
-
}
|
|
64
|
-
}
|
|
65
|
-
});
|
|
66
|
-
}
|
|
67
|
-
const selectDiv = this.dom.inputsDiv.append("div").style("display", "inline-block");
|
|
68
|
-
selectDiv.append("div").style("display", "inline-block").style("padding", "3px 10px").html("Scale values");
|
|
69
|
-
this.dom.scaleSelect = selectDiv.append("select").on("change", (event) => {
|
|
70
|
-
if (event.target.value == "1") delete this.q.scale;
|
|
71
|
-
else {
|
|
72
|
-
if (this.dom.convert2ZCheckbox) this.dom.convert2ZCheckbox.property("checked", false);
|
|
73
|
-
this.q.scale = Number(event.target.value);
|
|
74
|
-
}
|
|
75
|
-
});
|
|
76
|
-
this.dom.scaleSelect.selectAll("option").data([
|
|
77
|
-
{ html: "No Scaling", value: 1 },
|
|
78
|
-
{ html: "Per 10", value: 10 },
|
|
79
|
-
{ html: "Per 100", value: 100 },
|
|
80
|
-
{ html: "Per 1000", value: 1e3 }
|
|
81
|
-
]).enter().append("option").attr("value", (d) => d.value).html((d) => d.html).property("selected", (d) => "scale" in this.q && d.value == this.q.scale);
|
|
82
|
-
}
|
|
83
|
-
getEditedQ() {
|
|
84
|
-
const scaleValue = this.dom.scaleSelect.property("value");
|
|
85
|
-
if (scaleValue == "1") delete this.q.scale;
|
|
86
|
-
else this.q.scale = Number(scaleValue);
|
|
87
|
-
if (this.dom.convert2ZCheckbox) this.q.convert2ZScore = this.dom.convert2ZCheckbox.property("checked");
|
|
88
|
-
return this.q;
|
|
89
|
-
}
|
|
90
|
-
destroy() {
|
|
91
|
-
for (const name of Object.keys(this.dom)) {
|
|
92
|
-
this.dom[name].remove();
|
|
93
|
-
delete this.dom[name];
|
|
94
|
-
}
|
|
95
|
-
}
|
|
96
|
-
};
|
|
97
|
-
export {
|
|
98
|
-
NumContEditor
|
|
99
|
-
};
|
|
100
|
-
//# sourceMappingURL=NumContEditor-EH6MA2RW.js.map
|