@sjcrh/proteinpaint-client 2.224.2 → 2.226.0

package/dist/chunk-KA3KYNOP.js

@@ -1,195 +0,0 @@
-import {
-  sample_match_termvaluesetting
-} from "./chunk-BOQYGAYA.js";
-import {
-  isDictionaryType
-} from "./chunk-5FD6NRGE.js";
-import {
-  __export
-} from "./chunk-HS5PO5ZQ.js";
-
-// plots/matrix/matrix.data.js
-var matrix_data_exports = {};
-__export(matrix_data_exports, {
-  applyLegendValueFilter: () => applyLegendValueFilter,
-  getMatrixRequestOpts: () => getMatrixRequestOpts,
-  mayRequireToken: () => mayRequireToken,
-  setData: () => setData
-});
-function mayRequireToken(tokenMessage = "") {
-  const message = tokenMessage || this.state.tokenVerificationMessage;
-  if (!message && this.state.hasVerifiedToken) {
-    this.dom.errdiv.style("display", "none").html();
-    this.dom.controls.style("display", this.opts.controls ? "inline-block" : "");
-    this.dom.svg.style("display", "");
-    return false;
-  } else {
-    this.dom.errdiv.style("display", "").html(message || "Requires login");
-    this.dom.controls.style("display", "none");
-    this.dom.svg.style("display", "none");
-    return true;
-  }
-}
-function getMatrixRequestOpts(state, config) {
-  const terms = [];
-  const termgroups = this.chartType == "hierCluster" ? config.termgroups.filter((grp) => grp.type != "hierCluster") : config.termgroups;
-  for (const grp of termgroups) {
-    terms.push(...getNormalizedTwLstCopy(grp.lst));
-  }
-  if (config.divideBy) terms.push(normalizeTwForRequest(structuredClone(config.divideBy)));
-  const opts = {
-    terms,
-    filter: state.filter,
-    filter0: state.filter0,
-    maxGenes: state.config.settings.matrix.maxGenes,
-    /*********** quick fix
-    when the flag is true, set artificially large number to ensure all genes are sent in one query
-    this avoids changing getAnnotatedSampleData()
-    additional non-matrix app that calls getAnnotatedSampleData will NEED THE SAME FIX
-    */
-    termsPerRequest: this.app.vocabApi.termdbConfig.queries?.snvindel?.byisoform?.processTwsInOneQuery ? 1e3 : 1
-  };
-  if (this.chartType != "hierCluster" && config.settings.matrix.mapChildren2Root) opts.mapChildren2Root = true;
-  if (this.chartType == "hierCluster") {
-    opts.isHierCluster = 1;
-  }
-  return opts;
-}
-function getNormalizedTwLstCopy(twlst) {
-  const lst = [];
-  for (const tw of twlst) {
-    if (tw.type && tw.constructor.name != "Object") lst.push(tw);
-    else lst.push(normalizeTwForRequest(tw));
-  }
-  lst.forEach(normalizeTwForRequest);
-  lst.sort(sortTwLst);
-  return lst;
-}
-function normalizeTwForRequest(_tw) {
-  const tw = structuredClone(_tw);
-  if (!tw?.term) return;
-  delete tw.term.category2samplecount;
-  if (isDictionaryType(tw.term.type) && tw.term.type !== "samplelst") delete tw.term.values;
-  return tw;
-}
-function sortTwLst(twa, twb) {
-  const a = twa?.$id || twa.term?.id || twa?.term?.name;
-  const b = twb?.$id || twb.term?.id || twb?.term?.name;
-  return a < b ? -1 : 1;
-}
-async function setData(_data) {
-  const opts = this.currRequestOpts?.matrix || this.getMatrixRequestOpts(this.state, this.config);
-  this.numTerms = opts.terms.length;
-  opts.loadingDiv = this.chartType != "hierCluster" && this.dom.loadingDiv;
-  opts.signal = this.api.getAbortSignal();
-  const data = await this.app.vocabApi.getAnnotatedSampleData(opts, _data);
-  this.data = data;
-  this.origData = structuredClone(this.data);
-  this.sampleIdMap = {};
-  for (const d of this.data.lst) {
-    this.sampleIdMap[d.sample] = d._ref_.label;
-  }
-}
-function applyLegendValueFilter() {
-  const self = this;
-  if (!self.config.legendValueFilter.lst.length && !self.config.legendGrpFilter.lst.length) return;
-  for (const grpFilter of self.config.legendGrpFilter.lst) {
-    if (grpFilter.dt) {
-      const filteredOutCats = /* @__PURE__ */ new Set();
-      for (const oneSampleData of self.origData.lst) {
-        for (const annoForOneTerm of Object.values(oneSampleData)) {
-          if (annoForOneTerm.values) {
-            const newValues = [];
-            for (const v of annoForOneTerm.values) {
-              if (!(grpFilter.dt.includes(v.dt) && (!grpFilter.origin || v.origin == grpFilter.origin))) {
-                newValues.push(v);
-              } else {
-                filteredOutCats.add(v.class);
-              }
-            }
-            annoForOneTerm.values = newValues;
-          }
-        }
-      }
-      grpFilter.filteredOutCats = [...filteredOutCats];
-      for (const oneSampleData of Object.values(self.origData.samples)) {
-        for (const annoForOneTerm of Object.values(oneSampleData)) {
-          if (annoForOneTerm.values)
-            annoForOneTerm.values = annoForOneTerm.values.filter(
-              (v) => !(grpFilter.dt.includes(v.dt) && (!grpFilter.origin || v.origin == grpFilter.origin))
-            );
-        }
-      }
-    }
-  }
-  const geneVariant$ids = Object.values(self.data.refs.byTermId).filter((v) => v.term?.type == "geneVariant").map((v) => v.$id);
-  const data = { samples: {}, lst: [], refs: self.data.refs };
-  const onlyHardFilter = structuredClone(self.config.legendValueFilter);
-  onlyHardFilter.lst = onlyHardFilter.lst.filter(
-    (l) => !l.tvs.legendFilterType || l.tvs.legendFilterType !== "geneVariant_soft"
-  );
-  for (const row of self.origData.lst) {
-    const include = sample_match_termvaluesetting(row, onlyHardFilter, geneVariant$ids);
-    if (include || self.chartType == "hierCluster") {
-      data.samples[row.sample] = row;
-      data.lst.push(row);
-    }
-  }
-  for (const valFilter of self.config.legendValueFilter.lst) {
-    if (valFilter.tvs.legendFilterType !== "geneVariant_soft") continue;
-    const tvsV = valFilter.tvs.values[0];
-    const filteredOutCats = /* @__PURE__ */ new Set();
-    for (const oneSampleData of data.lst) {
-      for (const annoForOneTerm of Object.values(oneSampleData)) {
-        if (annoForOneTerm.values) {
-          const newValues = [];
-          for (const v of annoForOneTerm.values) {
-            if (!(v.dt == tvsV.dt && (!tvsV.origin || v.origin == tvsV.origin) && tvsV.mclasslst.includes(v.class))) {
-              newValues.push(v);
-            } else {
-              filteredOutCats.add(v.class);
-            }
-          }
-          annoForOneTerm.values = newValues;
-        }
-      }
-    }
-    valFilter.filteredOutCats = [...filteredOutCats];
-    for (const oneSampleData of Object.values(data.samples)) {
-      for (const annoForOneTerm of Object.values(oneSampleData)) {
-        if (annoForOneTerm.values)
-          annoForOneTerm.values = annoForOneTerm.values.filter(
-            (v) => !(v.dt == tvsV.dt && (!tvsV.origin || v.origin == tvsV.origin) && tvsV.mclasslst.includes(v.class))
-          );
-      }
-    }
-  }
-  if (self.chartType !== "hierCluster" && geneVariant$ids.length && self.app.vocabApi.termdbConfig?.matrix?.removeEmptySamples)
-    remove_empty_sample(data, geneVariant$ids);
-  self.data = data;
-}
-function remove_empty_sample(data) {
-  for (const oneSampleData of data.lst) {
-    let removeSample = true;
-    for (const [key, annoForOneTerm] of Object.entries(oneSampleData)) {
-      if (!annoForOneTerm.values) continue;
-      const annoType = data.refs.byTermId[key].term.type;
-      if (annoType != "geneVariant") continue;
-      if (annoForOneTerm.values.length) removeSample = false;
-    }
-    if (removeSample) {
-      data.lst = data.lst.filter((dl) => dl.sample !== oneSampleData.sample);
-      delete data.samples[parseInt(oneSampleData.sample)];
-    }
-  }
-  return data;
-}
-
-export {
-  mayRequireToken,
-  getMatrixRequestOpts,
-  setData,
-  applyLegendValueFilter,
-  matrix_data_exports
-};
-//# sourceMappingURL=chunk-KA3KYNOP.js.map

package/dist/chunk-KGFH5VTH.js

@@ -1,444 +0,0 @@
-import {
-  schemeCategory20
-} from "./chunk-V2OJLJSK.js";
-import {
-  isNumericTerm
-} from "./chunk-5FD6NRGE.js";
-import {
-  category10_default,
-  dtcnv,
-  dtsnvindel
-} from "./chunk-R2H22S4J.js";
-import {
-  linear,
-  ordinal
-} from "./chunk-4OLM3KSB.js";
-import {
-  __export
-} from "./chunk-HS5PO5ZQ.js";
-
-// plots/matrix/matrix.legend.js
-var matrix_legend_exports = {};
-__export(matrix_legend_exports, {
-  CNVkey2order: () => CNVkey2order,
-  getLegendData: () => getLegendData,
-  getLegendItemText: () => getLegendItemText
-});
-function getLegendData(legendGroups, refs, self) {
-  const s = this.settings.matrix;
-  const legendData = [];
-  const dvt = this.config.divideBy || {};
-  const dvtId = dvt && "id" in dvt ? dvt.id : dvt.name;
-  for (const $id in legendGroups) {
-    const legend = legendGroups[$id];
-    if ($id == "Consequences") {
-      for (const f of this.config.legendValueFilter.lst) {
-        if (f.tvs.term.type !== "geneVariant") continue;
-        if (f.legendGrpName != $id) continue;
-        if (f.tvs.legendFilterType == "geneVariant_soft" && f.filteredOutCats.length == 0) {
-          continue;
-        }
-        for (const v of f.tvs.values) {
-          for (const key of v.mclasslst) {
-            const legendk = v.origin ? v.origin + key : key;
-            legend.values[legendk] = {
-              key,
-              dt: v.dt,
-              origin: v.origin,
-              label: v.label || self.mclass[key].label,
-              fill: v.color || self.mclass[key]?.color,
-              order: CNVkey2order(key),
-              crossedOut: f.tvs.legendFilterType == "geneVariant_hard" ? true : false,
-              greyedOut: f.tvs.legendFilterType == "geneVariant_soft" ? true : false
-            };
-          }
-        }
-      }
-      const keys2 = Object.keys(legend.values);
-      if (!keys2.length) continue;
-      legendData.unshift({
-        name: "Consequences",
-        order: legend.order,
-        $id: legend.$id,
-        dt: legend.dt,
-        origin: legend.origin,
-        items: keys2.map((key, i) => {
-          const item = legend.values[key];
-          const count = item.samples?.size;
-          return {
-            termid: "Consequences",
-            key: item.key,
-            text: this.getLegendItemText(item, count, {}, s),
-            color: item.fill,
-            order: i,
-            border: "1px solid #ccc",
-            count,
-            isLegendItem: true,
-            dt: item.dt,
-            crossedOut: item.crossedOut,
-            greyedOut: item.greyedOut,
-            origin: item.origin
-          };
-        })
-      });
-      legendData[0].items.sort((a, b) => a.text < b.text ? -1 : 1);
-      continue;
-    }
-    const t = $id == dvtId ? { tw: dvt } : this.termOrder.find((t2) => t2.tw.$id == $id || t2.tw.legend?.group == $id) || {
-      tw: { term: { id: $id, name: $id, type: $id === "CNV" ? "geneVariant" : "" } }
-    };
-    for (const f of this.config.legendValueFilter.lst) {
-      const name = t.tw.legend?.group || t.tw.label || t.tw.term.name;
-      if (f.legendGrpName != $id && f.legendGrpName != name && f.tvs.term.name != name) continue;
-      if (f.tvs.term.type == "geneVariant") {
-        for (const v of f.tvs.values) {
-          if (legend.dt && !legend.dt.includes(v.dt)) legend.dt.push(v.dt);
-          if (f.tvs.legendFilterType == "geneVariant_soft" && f.filteredOutCats.length == 0) {
-            continue;
-          }
-          for (const key of v.mclasslst) {
-            const legendk = v.origin ? v.origin + key : key;
-            legend.values[legendk] = {
-              key,
-              dt: v.dt,
-              origin: v.origin,
-              label: v.label || self.mclass[key]?.label || "Gain and loss",
-              fill: v.color || self.mclass[key]?.color,
-              order: CNVkey2order(key),
-              crossedOut: f.tvs.legendFilterType == "geneVariant_hard" ? true : false,
-              greyedOut: f.tvs.legendFilterType == "geneVariant_soft" ? true : false
-            };
-          }
-        }
-      } else {
-        if (isNumericTerm(f.tvs.term)) {
-          if (t.ref?.bins) {
-            for (const v of f.tvs.ranges) {
-              const termValues = t.ref.bins;
-              legend.values[v.name] = {
-                key: v.name,
-                label: termValues?.find((vl) => vl.name == v.name)?.name || v.name,
-                fill: termValues?.find((vl) => vl.name == v.name)?.color,
-                crossedOut: true
-              };
-            }
-          }
-        } else if (f.tvs.term.type == "survival") {
-          for (const v of f.tvs.values) {
-            const termValues = t.tw.term.values;
-            legend.values[v.key] = {
-              key: v.key,
-              label: termValues?.[v.key]?.label || "Exit code: " + v.key,
-              fill: v.key == 1 ? "#ff7f0e" : "#1f77b4",
-              crossedOut: true
-            };
-          }
-        } else {
-          for (const v of f.tvs.values) {
-            const termValues = t.tw.term.values;
-            legend.values[v.key] = {
-              key: v.key,
-              label: termValues?.[v.key]?.label || v.key,
-              fill: termValues?.[v.key]?.color,
-              crossedOut: true
-            };
-          }
-        }
-      }
-    }
-    const keys = Object.keys(legend.values).sort();
-    const hasScale = Object.values(legend.values).find((v) => v.scale);
-    if (hasScale) {
-      if (legend === legendGroups?.CNV) {
-        const gain = legend.values["CNV_amp"];
-        const loss = legend.values["CNV_loss"];
-        if (gain?.scale && loss?.scale) {
-          const colors = loss.scales?.legend.range;
-          const domain = loss.scales?.legend.domain;
-          const setLegendAttr = (item) => {
-            return {
-              $id,
-              domain: item.scales.legend.domain,
-              key: item.key,
-              isLegendItem: true,
-              minLabel: domain[0],
-              //item.minLoss, // item.maxLabel,
-              maxLabel: domain.slice(-1)[0],
-              //item.maxGain, // item.maxLabel,
-              scale: item.scale,
-              termid: "CNV"
-            };
-          };
-          const numericInputs = {
-            cutoffMode: s.cnvValues.cutoffMode,
-            defaultPercentile: s.cnvValues.defaultPercentile,
-            percentile: s.cnvValues.percentile,
-            callback: async (obj) => {
-              const cValues = self.config.settings.matrix.cnvValues;
-              if (obj.cutoffMode == "fixed") {
-                if (cValues.min == null) cValues.min = domain[0];
-                if (cValues.max == null) cValues.max = domain[domain.length - 1];
-                if (obj.min != cValues.min) obj.max = Math.abs(obj.min);
-                else obj.min = -obj.max;
-              }
-              self.config.settings.matrix.cnvValues = {
-                defaultPercentile: self.config.settings.matrix.cnvValues.defaultPercentile,
-                cutoffMode: obj.cutoffMode,
-                min: obj.min,
-                max: obj.max,
-                percentile: obj.percentile
-              };
-              await self.app.dispatch({
-                type: "plot_edit",
-                id: self.opts.id,
-                config: self.config
-              });
-            }
-          };
-          legend.values.CNV_gain_loss = {
-            key: $id,
-            label: "Gain and Loss",
-            dt: dtcnv,
-            order: -1,
-            domain,
-            name: "CNV gain/loss",
-            scale: linear().domain(domain).range(colors),
-            scales: loss.scales,
-            //Prevent the colors and domain recalculating below
-            minLabel: domain[0],
-            //loss.maxLabel,
-            maxLabel: domain.slice(-1)[0],
-            labels: { left: "Loss", right: "Gain" },
-            parents: [Object.assign(setLegendAttr(loss), loss), Object.assign(setLegendAttr(gain), gain)],
-            samples: /* @__PURE__ */ new Set([...gain.samples, ...loss.samples]),
-            numericInputs
-          };
-          delete legend.values[gain.key];
-          delete legend.values[loss.key];
-          keys.splice(keys.indexOf(gain.key), 1);
-          keys.splice(keys.indexOf(loss.key), 1);
-          keys.push("CNV_gain_loss");
-        }
-      }
-      const legendGrpLabelMaxChars = s.legendGrpLabelMaxChars || 26;
-      legendData.push({
-        name: $id.length < legendGrpLabelMaxChars ? $id : $id.slice(0, legendGrpLabelMaxChars) + "...",
-        //name:$id,
-        order: legend.order,
-        $id: legend.$id,
-        dt: legend.dt,
-        origin: legend.origin,
-        hasScale,
-        items: keys.map((key, i) => {
-          const item = legend.values[key];
-          const count = item.samples?.size;
-          if (item.scale) {
-            const colors = item.scales?.legend?.range || getColors(item);
-            const domain = item.scales?.legend?.domain || setColorScaleDomain(item.minLabel, item.maxLabel, item.domain, colors);
-            const opts = {
-              termid: $id,
-              key: item.key,
-              text: this.getLegendItemText(item, count, t, s),
-              width: 100,
-              scale: item.scale,
-              colors,
-              domain,
-              order: "order" in item ? item.order : i,
-              count,
-              isLegendItem: true,
-              dt: item.dt,
-              crossedOut: item.crossedOut,
-              greyedOut: item.greyedOut,
-              origin: item.origin,
-              parents: item.parents,
-              labels: item.labels
-            };
-            if (item.numericInputs) {
-              opts.numericInputs = item.numericInputs;
-            }
-            return opts;
-          } else {
-            return {
-              termid: $id,
-              key: item.key,
-              text: this.getLegendItemText(item, count, t, s),
-              color: item.fill || this.colorScaleByTermId[$id](key),
-              order: "order" in item ? item.order : i,
-              count,
-              isLegendItem: true,
-              dt: item.dt,
-              crossedOut: item.crossedOut,
-              greyedOut: item.greyedOut,
-              origin: item.origin
-            };
-          }
-        })
-      });
-    } else {
-      const grp = $id;
-      const term = t.tw.term;
-      const ref = legend.ref;
-      if (ref.bins)
-        keys.sort((a, b) => ref.bins.findIndex((bin) => bin.name === a) - ref.bins.findIndex((bin) => bin.name === b));
-      else if (ref.keyOrder) keys.sort((a, b) => ref.keyOrder.indexOf(a) - ref.keyOrder.indexOf(b));
-      if (!this.colorScaleByTermId[grp])
-        this.colorScaleByTermId[grp] = keys.length < 11 ? ordinal(category10_default) : ordinal(schemeCategory20);
-      const name = t.tw.legend?.group || t.tw.label || term.name;
-      const legendGrpLabelMaxChars = s.legendGrpLabelMaxChars || 26;
-      legendData.push({
-        name: name.length < legendGrpLabelMaxChars ? name : name.slice(0, legendGrpLabelMaxChars) + "...",
-        order: legend.order,
-        $id: legend.$id,
-        dt: legend.dt,
-        origin: legend.origin,
-        items: keys.map((key, i) => {
-          const item = legend.values[key];
-          const count = item.samples?.size;
-          return {
-            $id,
-            termid: term.id || term.name,
-            key: item.key,
-            text: this.getLegendItemText(item, count, t, s),
-            color: t.scale || item.fill || this.colorScaleByTermId[grp](key),
-            order: "order" in item ? item.order : i,
-            count,
-            isExcluded: item.isExcluded,
-            //onClickCallback: this.handleLegendItemClick,
-            isLegendItem: true,
-            dt: item.dt,
-            crossedOut: item.crossedOut,
-            greyedOut: item.greyedOut,
-            origin: item.origin
-          };
-        })
-      });
-    }
-  }
-  for (const grpFilter of self.config.legendGrpFilter.lst) {
-    if (grpFilter.dt.length == 1 && grpFilter.dt[0] == 4 && !legendData.filter((l) => l.dt)?.find((l) => l.dt.length == 1 && l.dt[0] == 4)) {
-      legendData.push({
-        name: "CNV",
-        dt: grpFilter.dt,
-        origin: grpFilter.origin,
-        crossedOut: true,
-        items: grpFilter.filteredOutCats.map((fc) => {
-          return {
-            dt: 4,
-            termid: "CNV",
-            origin: grpFilter.origin,
-            key: fc,
-            text: self.mclass[fc].label,
-            color: self.mclass[fc]?.color,
-            isLegendItem: true
-          };
-        })
-      });
-    } else if (grpFilter.dt.includes(dtsnvindel)) {
-      const controlLabels = self.settings.matrix.controlLabels;
-      const groupName = grpFilter.origin ? `${grpFilter.origin[0].toUpperCase() + grpFilter.origin.slice(1)} ${controlLabels.Mutations}` : controlLabels.Mutations;
-      if (!legendData.filter((l) => l.dt)?.find((l) => l.dt.includes(dtsnvindel) && l.origin == grpFilter.origin)) {
-        legendData.push({
-          name: groupName,
-          dt: grpFilter.dt,
-          origin: grpFilter.origin,
-          crossedOut: true,
-          items: grpFilter.filteredOutCats.map((fc) => {
-            return {
-              dt: self.mclass[fc].dt,
-              origin: grpFilter.origin,
-              termid: groupName,
-              key: fc,
-              text: self.mclass[fc].label,
-              color: self.mclass[fc]?.color,
-              isLegendItem: true
-            };
-          })
-        });
-      }
-    } else if (grpFilter.dt.length == 1 && grpFilter.dt[0] == 2 && !legendData.filter((l) => l.dt)?.find((l) => l.dt.length == 1 && l.dt[0] == 2)) {
-      legendData.push({
-        name: "Fusion RNA",
-        dt: grpFilter.dt,
-        origin: grpFilter.origin,
-        crossedOut: true,
-        items: grpFilter.filteredOutCats.map((fc) => {
-          return {
-            dt: 2,
-            origin: grpFilter.origin,
-            termid: "Fusion RNA",
-            key: fc,
-            text: self.mclass[fc].label,
-            color: self.mclass[fc]?.color,
-            isLegendItem: true
-          };
-        })
-      });
-    } else if (grpFilter.dt.length == 1 && grpFilter.dt[0] == 5 && !legendData.filter((l) => l.dt)?.find((l) => l.dt.length == 1 && l.dt[0] == 5)) {
-      legendData.push({
-        name: "Structural Variation",
-        dt: grpFilter.dt,
-        origin: grpFilter.origin,
-        crossedOut: true,
-        items: grpFilter.filteredOutCats.map((fc) => {
-          return {
-            dt: 5,
-            origin: grpFilter.origin,
-            termid: "Structural Variation",
-            key: fc,
-            text: self.mclass[fc].label,
-            color: self.mclass[fc]?.color,
-            isLegendItem: true
-          };
-        })
-      });
-    }
-  }
-  for (const itemsGrp of legendData) {
-    itemsGrp.items.sort((a, b) => {
-      const getStatusOrder = (item) => {
-        if (!item.greyedOut && !item.crossedOut) return 0;
-        if (item.greyedOut && !item.crossedOut) return 1;
-        if (item.crossedOut) return 2;
-        return 3;
-      };
-      return getStatusOrder(a) - getStatusOrder(b);
-    });
-  }
-  return legendData.sort(
-    (a, b) => a.crossedOut && b.crossedOut ? 0 : a.crossedOut ? 1 : b.crossedOut ? -1 : a.order && b.order ? a.order - b.order : a.order ? -1 : b.order ? 1 : 0
-  );
-}
-function getLegendItemText(item, count, t, s) {
-  if (item.crossedOut || item.greyedOut) {
-    return item.label;
-  }
-  let text = item.label;
-  const notes = [count];
-  if (item.isExcluded) notes.push("hidden");
-  if (t?.tw?.term?.type == "geneVariant" && s.geneVariantCountSamplesSkipMclass.includes(item.key))
-    notes.push("not counted");
-  if (!notes.length) return text;
-  return text += ` (${notes.join(", ")})`;
-}
-function setColorScaleDomain(min, max, domain, colors) {
-  if (domain[0] === min && domain[domain.length - 1] === max) return domain;
-  const step = (max - min) / (colors.length - 1);
-  return colors.map((_, i) => {
-    if (i === (colors.length - 1) / 2 && min < 0 && max > 0) return 0;
-    return min + step * i;
-  });
-}
-function getColors(item) {
-  return item.domain?.map((c) => item.scale(c)) || item.scale.range();
-}
-function CNVkey2order(key) {
-  return key == "CNV_homozygous_deletion" ? -5 : key == "CNV_amplification" ? -4 : key == "CNV_loss" ? -3 : key == "CNV_amp" ? -2 : key == "CNV_loh" ? -1 : 0;
-}
-
-export {
-  getLegendData,
-  getLegendItemText,
-  CNVkey2order,
-  matrix_legend_exports
-};
-//# sourceMappingURL=chunk-KGFH5VTH.js.map