@sjcrh/proteinpaint-client 2.224.1 → 2.224.2

package/dist/databrowser.ui-HLWUAHSZ.js

@@ -1,421 +0,0 @@
-import {
-  isURL,
-  makeBtn,
-  makeFileUpload,
-  makePrompt,
-  makeResetBtn,
-  makeTextAreaInput,
-  makeTextInput
-} from "./chunk-5EBRF6Z7.js";
-import {
-  appInit
-} from "./chunk-2FTQ5RMP.js";
-import "./chunk-IW5XJT3H.js";
-import "./chunk-C7KUMZQM.js";
-import "./chunk-TZVSDB7S.js";
-import "./chunk-ZV7LZY67.js";
-import "./chunk-FZYVPRVQ.js";
-import "./chunk-4E2F26CC.js";
-import "./chunk-FE5TCBIT.js";
-import "./chunk-K2ARLT2A.js";
-import "./chunk-O6T4SDC7.js";
-import {
-  Tabs,
-  appear,
-  sayerror
-} from "./chunk-3YQYWX4M.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-R3RD3VEX.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-KBTFT76L.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// src/databrowser/dictionary.parse.js
-function parseDictionary(input) {
-  const terms = {};
-  const lines = input.trim().split(/\r?\n/);
-  const header = lines[0].split("	");
-  const term_idIndex = header.findIndex((l) => l.toLowerCase().includes("term_id"));
-  const variableIndex = header.findIndex((l) => l.toLowerCase().includes("variable"));
-  if (term_idIndex != -1) parseDataDictionary(lines, header);
-  if (variableIndex != -1) parsePhenotree(lines, header);
-  if (variableIndex == -1 && term_idIndex == -1) {
-    throw `Unrecognized file format. Please check the header names.`;
-  }
-  function parseDataDictionary(lines2, header2) {
-    const parIdIndex = header2.findIndex((l) => l.toLowerCase().includes("parent_id"));
-    if (parIdIndex == -1) {
-      throw `Missing required 'parent_id' header`;
-    }
-    const nameIndex = header2.findIndex((l) => l.toLowerCase().includes("name"));
-    if (nameIndex == -1) {
-      throw `Missing required 'Name' header`;
-    }
-    const typeIndex = header2.findIndex((l) => {
-      const v = l.trim().toLowerCase();
-      return v === "type";
-    });
-    if (typeIndex == -1) {
-      throw `Missing required 'Type' header`;
-    }
-    const valuesIndex = header2.findIndex((l) => l.toLowerCase().includes("values"));
-    if (valuesIndex == -1) {
-      throw `Missing required 'Values' header`;
-    }
-    if (parIdIndex == -1 || nameIndex == -1 || typeIndex == -1 || valuesIndex == -1) {
-      throw `Missing required header(s)`;
-    }
-    const parentIds = /* @__PURE__ */ new Set();
-    for (const [i, line] of lines2.entries()) {
-      if (i === 0) continue;
-      const lineNum = i + 1;
-      try {
-        const cols = line.split("	");
-        for (const [i2, c] of cols.entries()) {
-          const colNum = i2 + 1;
-          let foundProblem;
-          if (i2 == valuesIndex) continue;
-          if (c == "" || c == "-") {
-            foundProblem = true;
-            throw `Blank or '-' entered for line ${lineNum}, column ${colNum}`;
-          }
-          if (foundProblem == true) throw `Invalid entry for line ${lineNum}, column ${colNum}`;
-        }
-        const termId = cols[term_idIndex];
-        const type = cols[typeIndex];
-        terms[termId] = {
-          id: termId,
-          name: cols[nameIndex].trim().replace(/"/g, ""),
-          parent_id: cols[parIdIndex] != "root" ? cols[parIdIndex] : null,
-          type: cols[typeIndex] != "non graphable" ? cols[typeIndex] : null
-        };
-        parentIds.add(terms[termId].parent_id);
-        if (type == "categorical") {
-          terms[termId].values = {};
-        }
-        const values = cols[valuesIndex].trim().replace(/"/g, "").split(";");
-        for (const x of values) {
-          const v = x.trim();
-          if (v == "") continue;
-          const segments = v.split("=");
-          const key = segments.shift();
-          const label = segments.join("=");
-          if (!label) throw `Values="${v}" in line ${lineNum} not in a key = value format.`;
-          if (!terms[termId].values) terms[termId].values = {};
-          terms[termId].values[key] = { label };
-        }
-        const numValues = Object.keys(terms[termId].values).length;
-        terms[termId].groupsetting = { disabled: numValues < 3 };
-        validateNumericTermCategories(terms[termId]);
-      } catch (e) {
-        throw `Line ${lineNum} error: ${e}`;
-      }
-    }
-    for (const t in terms) terms[t].isleaf = !parentIds.has(terms[t].id);
-  }
-  function parsePhenotree(lines2, header2) {
-    if (variableIndex == -1) {
-      throw `Missing required 'Variable' header`;
-    }
-    const typeIndex = header2.findIndex((l) => {
-      const v = l.trim().toLowerCase();
-      return v === "type";
-    });
-    if (typeIndex == -1) {
-      throw `Missing required 'Type' header`;
-    }
-    const categoriesIndex = header2.findIndex((l) => l.toLowerCase().includes("categories"));
-    const levelColIndexes = header2.map((c, i) => c.toLowerCase().includes("level_") ? i : -1).filter((i) => i != -1);
-    if (!levelColIndexes.length) levelColIndexes.push(variableIndex);
-    const unitIndex = header2.findIndex((l) => l.toLowerCase().includes("unit"));
-    const sampleTypeIndex = header2.findIndex((l) => {
-      const v = l.trim().toLowerCase();
-      return v === "sample_type";
-    });
-    const additionalAttrIndexes = header2.findIndex((l) => l.toLowerCase().includes("additional attributes"));
-    const termNameToId = {};
-    const parentTermNames = /* @__PURE__ */ new Set();
-    const parent2ChildOrder = /* @__PURE__ */ new Map();
-    parent2ChildOrder.set(null, []);
-    for (const [i, line] of lines2.entries()) {
-      if (i === 0) continue;
-      const lineNum = i + 1;
-      try {
-        const cols = line.split("	");
-        const levelNames = levelColIndexes.map((i2) => cols[i2].trim().replace(/"/g, "")).filter((c) => c != "-");
-        if (levelNames.length != new Set(levelNames).size) {
-          throw `Non-unique levels in line ${lineNum}: ${JSON.stringify(levelNames)}`;
-        }
-        for (const [i2, lvlName] of levelNames.entries()) {
-          if (i2 == 0) {
-            if (parent2ChildOrder.get(null).indexOf(lvlName) == -1) parent2ChildOrder.get(null).push(lvlName);
-          }
-          if (i2 != levelNames.length - 1) {
-            if (!parent2ChildOrder.has(lvlName)) parent2ChildOrder.set(lvlName, []);
-          }
-          for (const n of levelNames) {
-            if (i2 == levelNames.indexOf(n) - 1) {
-              if (parent2ChildOrder.get(lvlName).indexOf(n) == -1) parent2ChildOrder.get(lvlName).push(n);
-            }
-          }
-        }
-        const name = levelNames.pop();
-        const firstDashIndex = cols.indexOf("-");
-        if (firstDashIndex != -1 && firstDashIndex < cols.indexOf(name)) {
-          throw `Blank or '-' value detected between levels in line ${lineNum}`;
-        }
-        const term = parseCategories(cols[typeIndex], cols[categoriesIndex], lineNum, name);
-        const id = cols[variableIndex] || name;
-        if (id in terms) {
-          const orig = terms[id];
-          throw `Error: Multiple config rows for term.id='${id}': lines# ${orig.lineNum} and ${lineNum}`;
-        }
-        terms[id] = {
-          id,
-          name,
-          type: term.type,
-          values: term.values,
-          groupsetting: term.groupsetting,
-          // *** temporary attributes to be deleted later ***
-          ancestry: levelNames.slice(),
-          // to be deleted later, used to fill in missing terms
-          parent_name: levelNames.pop() || null,
-          // will change this later to parent_id
-          lineNum
-          // to be deleted later
-        };
-        if (cols[unitIndex] != null) terms[id].unit = cols[unitIndex];
-        if (cols[sampleTypeIndex] != null) terms[id].sample_type = cols[sampleTypeIndex];
-        if (cols[additionalAttrIndexes]) {
-          Object.assign(terms[id], JSON.parse(cols[additionalAttrIndexes]));
-        }
-        termNameToId[name] = id;
-        parentTermNames.add(terms[id].parent_name);
-      } catch (e) {
-        throw `Line ${lineNum} error: ${e}`;
-      }
-    }
-    trackMissingTerms(termNameToId, terms, parentTermNames, parent2ChildOrder);
-    for (const id in terms) {
-      const term = terms[id];
-      term.child_order = parent2ChildOrder.get(term.parent_name).indexOf(term.name) + 1;
-      term.isleaf = !parentTermNames.has(term.name);
-      term.parent_id = termNameToId[term.parent_name] || null;
-      delete term.parent_name;
-      delete term.lineNum;
-      delete term.ancestry;
-    }
-  }
-  return { terms: Object.values(terms) };
-}
-function parseCategories(type, catJSON, lineNum, varName) {
-  if (!type) throw `No type provided for variable: ${varName} on line ${lineNum}`;
-  const term = {
-    type,
-    values: catJSON == "" || catJSON == void 0 ? {} : JSON.parse(catJSON)
-  };
-  validateNumericTermCategories(term);
-  if (term.type == "categorical") {
-    const numValues = Object.keys(term.values).length;
-    term.groupsetting = { disabled: numValues < 3 };
-  }
-  return term;
-}
-function trackMissingTerms(termNameToId, terms, parentTermNames, parent2ChildOrder) {
-  for (const id in terms) {
-    const term = terms[id];
-    for (const [i, name] of term.ancestry.entries()) {
-      if (name in termNameToId) {
-        const id2 = termNameToId[name];
-        const ancestor = terms[id2];
-        if (i - 1 < 0 && ancestor.parent_name || ancestor.parent_name != term.ancestry[i - 1]) {
-          throw `Different parents for term=${name}, '${term.ancestry[i - 1]}' and '${ancestor.parent_name}'`;
-        }
-        continue;
-      }
-      terms[name] = {
-        id: name,
-        name,
-        isleaf: false,
-        ancestry: term.ancestry.slice(0, i)
-      };
-      terms[name].parent_name = terms[name].ancestry.slice(-1)[0] || null;
-      termNameToId[name] = name;
-      parentTermNames.add(name);
-    }
-  }
-}
-function validateNumericTermCategories(term) {
-  if (term.type != "integer" && term.type != "float") return;
-  if (!term.values) return;
-  if (typeof term.values != "object") throw "numeric .values{} is not object";
-  for (const key in term.values) {
-    if (key == "") throw "Cannot use empty string as an uncomputable category";
-    const tmp = Number(key);
-    if (Number.isNaN(tmp)) {
-      throw `Uncomputable category of a numeric term is required to be a number (here uses non-numeric value of ${key}).`;
-    }
-    term.values[key].uncomputable = true;
-  }
-}
-
-// src/databrowser/databrowser.ui.js
-function init_databrowserUI(holder, debugmode) {
-  const wrapper = holder.append("div").style("margin", "20px 20px 20px 40px").style(
-    "font-family",
-    "'Lucida Sans', 'Lucida Sans Regular', 'Lucida Grande', 'Lucida Sans Unicode', Geneva, Verdana, sans-serif"
-  ).style("place-items", "center left").style("overflow", "hidden").classed("sjpp-app-ui", true);
-  const obj = {};
-  infoSection(wrapper);
-  makeSectionHeader(wrapper, "Data Dictionary");
-  const tabs_div = wrapper.append("div").style("margin-left", "2vw");
-  makeDataDictionaryTabs(tabs_div, obj);
-  const controlBtns_div = wrapper.append("div").style("display", "flex").style("align-items", "center").style("margin", "40px 0px 40px 130px");
-  submitButton(controlBtns_div, obj, wrapper, holder);
-  makeResetBtn(controlBtns_div, obj, ".databrowser_input");
-  if (debugmode) window.doms = obj;
-  return obj;
-}
-function infoSection(div) {
-  div.append("div").style("margin", "10px").style("opacity", "0.65").html(`
-			<ul>
-                <li>
-                    Please see the <a href="https://github.com/stjude/proteinpaint/wiki/Data-Browser" target="_blank">documentation</a> for more information.
-                </li>
-				<li>
-					Download an example data dictionary <a href="https://proteinpaint.stjude.org/ppdemo/databrowser/dictionaryDemoData.tar.gz" target="_self" "download>here</a>.
-				</li>
-            </ul>`);
-}
-function makeSectionHeader(div, text) {
-  const header = makePrompt(div, text);
-  header.style("font-size", "1.5em").style("color", "#003366").style("margin", "20px 10px 40px 10px").classed("sjpp-databrowser-section-header", true);
-  const hr = div.append("hr");
-  hr.style("color", "ligthgrey").style("margin", "-30px 0px 15px 0px").style("width", "50vw").style("opacity", "0.4");
-}
-function makeDataDictionaryTabs(tabs_div, obj) {
-  const tabs = [
-    {
-      label: "Select File",
-      active: true,
-      width: 95,
-      callback: async (event, tab) => {
-        tab.contentHolder.style("border", "none").style("display", "block");
-        appear(tab.contentHolder);
-        tab.contentHolder.append("div").html(`<p style="margin-left: 10px; opacity: 0.65;">Select a file from your computer.</p>`);
-        makeFileUpload2(tab.contentHolder, obj);
-        delete tab.callback;
-      }
-    },
-    {
-      label: "Paste Data",
-      active: false,
-      width: 95,
-      callback: async (event, tab) => {
-        tab.contentHolder.style("border", "none").style("display", "block");
-        appear(tab.contentHolder);
-        tab.contentHolder.append("div").html(
-          `<p style="margin-left: 10px; opacity: 0.65;">Paste data dictionary or phenotree in a tab delimited format.</p>`
-        );
-        makeCopyPasteInput(tab.contentHolder, obj);
-        delete tab.callback;
-      }
-    },
-    {
-      label: "File Path",
-      active: false,
-      width: 95,
-      callback: async (event, tab) => {
-        tab.contentHolder.style("border", "none").style("display", "block");
-        appear(tab.contentHolder);
-        tab.contentHolder.append("div").html(`<p style="margin-left: 10px; opacity: 0.65;">Provide a URL file path.</p>`);
-        makePrompt(tab.contentHolder, "URL");
-        makeTextEntryFilePathInput(tab.contentHolder, obj);
-        delete tab.callback;
-      }
-    }
-  ];
-  new Tabs({ holder: tabs_div, tabs }).main();
-}
-function makeTextEntryFilePathInput(div, obj) {
-  const filepath_div = div.append("div").style("display", "inline-block");
-  const filepath = makeTextInput(filepath_div).style("border", "1px solid rgb(138, 177, 212)").classed("databrowser_input", true).on("keyup", async () => {
-    const data = filepath.property("value").trim();
-    if (isURL(data)) {
-      const txt = await fetch(data).then((req) => req.text()).then((txt2) => {
-        obj.data = parseDictionary(txt2);
-      });
-    } else {
-    }
-  });
-}
-function makeFileUpload2(div, obj) {
-  const upload_div = div.append("div").style("display", "inline-block");
-  const upload = makeFileUpload(upload_div).classed("databrowser_input", true);
-  upload.on("change", (event) => {
-    const file = event.target.files[0];
-    const reader = new FileReader();
-    reader.onload = (event2) => {
-      obj.data = parseDictionary(event2.target.result);
-    };
-    reader.readAsText(file, "utf8");
-  });
-}
-function makeCopyPasteInput(div, obj) {
-  const paste_div = div.append("div").style("display", "block");
-  const paste = makeTextAreaInput({ div: paste_div, rows: 10 }).style("border", "1px solid rgb(138, 177, 212)").style("margin", "0px 0px 0px 20px").classed("databrowser_input", true).on("keyup", async () => {
-    obj.data = parseDictionary(paste.property("value").trim());
-  });
-}
-function submitButton(div, obj, wrapper, holder) {
-  const submit = makeBtn({
-    div,
-    text: "Create Data Browser",
-    color: "white",
-    backgroundColor: "#001aff",
-    border: "2px solid #001aff"
-  });
-  const errorMessage_div = div.append("div");
-  submit.style("margin-right", "10px").style("font-size", "16px").classed("sjpp-ui-submitBtn", true).attr("type", "submit").on("click", () => {
-    if (!obj.data || obj.data == void 0) {
-      const sayerrorDiv = errorMessage_div.append("div").style("display", "inline-block").style("max-width", "20vw");
-      sayerror(sayerrorDiv, "Please provide data");
-      setTimeout(() => sayerrorDiv.remove(), 3e3);
-    } else {
-      wrapper.remove();
-      appInit({
-        holder,
-        state: {
-          vocab: {
-            terms: obj.data.terms
-          },
-          plots: [
-            {
-              chartType: "dictionary"
-            }
-          ]
-        }
-      });
-    }
-  });
-}
-export {
-  init_databrowserUI
-};
-//# sourceMappingURL=databrowser.ui-HLWUAHSZ.js.map

package/dist/databrowser.ui-HLWUAHSZ.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../src/databrowser/dictionary.parse.js", "../src/databrowser/databrowser.ui.js"],
-  "sourcesContent": ["/*\n------ EXPORTED ------ \nparseDictionary()\n\t- div\n\t- input: STR\n\n------ Internal ------ \nTraditional data dictionary parsing: \n\t1. parseDataDictionary\n\nPhenotree parsing:\n\t1. parseConfig()\n\t2. trackMissingTerms\n*/\n\nexport function parseDictionary(input) {\n\t// Returns terms array for appInit({state.vocab.terms})\n\tconst terms = {}\n\n\tconst lines = input.trim().split(/\\r?\\n/)\n\t// process the header line\n\t// could have used lines.shift() here, but will want to track actual line numbers later for errors\n\tconst header = lines[0].split('\\t')\n\n\tconst term_idIndex = header.findIndex(l => l.toLowerCase().includes('term_id'))\n\tconst variableIndex = header.findIndex(l => l.toLowerCase().includes('variable')) // term_id col in phenotree\n\tif (term_idIndex != -1) parseDataDictionary(lines, header)\n\tif (variableIndex != -1) parsePhenotree(lines, header)\n\tif (variableIndex == -1 && term_idIndex == -1) {\n\t\tthrow `Unrecognized file format. Please check the header names.`\n\t}\n\t// if (varNameIndex != -1 && term_idIndex != -1) throw 'Unrecognized file format'\n\n\tfunction parseDataDictionary(lines, header) {\n\t\t/*\n\t\tParses data dictionary in a term_id to parent_id format\n\t\t\t- Parses tab delim data arranged in required cols: term_id, parent_id, name, type, values\n\t\t\t- Assumptions:\n\t\t\t\t1. Headers required\n\t\t\t\t2. No blank or '-' values in the term_id, parent_id, name, or type columns. Top grandparents must include 'root' for the parent_id\n\t\t\t\t3. No identical term ids \n\t\t*/\n\t\tconst parIdIndex = header.findIndex(l => l.toLowerCase().includes('parent_id'))\n\t\tif (parIdIndex == -1) {\n\t\t\tthrow `Missing required 'parent_id' header`\n\t\t}\n\t\tconst nameIndex = header.findIndex(l => l.toLowerCase().includes('name'))\n\t\tif (nameIndex == -1) {\n\t\t\tthrow `Missing required 'Name' header`\n\t\t}\n\t\tconst typeIndex = header.findIndex(l => {\n\t\t\tconst v = l.trim().toLowerCase()\n\t\t\treturn v === 'type'\n\t\t})\n\t\tif (typeIndex == -1) {\n\t\t\tthrow `Missing required 'Type' header`\n\t\t}\n\t\tconst valuesIndex = header.findIndex(l => l.toLowerCase().includes('values'))\n\t\tif (valuesIndex == -1) {\n\t\t\tthrow `Missing required 'Values' header`\n\t\t}\n\t\tif (parIdIndex == -1 || nameIndex == -1 || typeIndex == -1 || valuesIndex == -1) {\n\t\t\tthrow `Missing required header(s)`\n\t\t}\n\n\t\tconst parentIds = new Set()\n\n\t\tfor (const [i, line] of lines.entries()) {\n\t\t\tif (i === 0) continue\n\t\t\tconst lineNum = i + 1 //Use for error messages\n\n\t\t\ttry {\n\t\t\t\tconst cols = line.split('\\t')\n\n\t\t\t\t//validate column entries, no blank or '-' values\n\t\t\t\tfor (const [i, c] of cols.entries()) {\n\t\t\t\t\tconst colNum = i + 1\n\t\t\t\t\tlet foundProblem\n\t\t\t\t\tif (i == valuesIndex) continue //values can be blank\n\t\t\t\t\tif (c == '' || c == '-') {\n\t\t\t\t\t\tfoundProblem = true\n\t\t\t\t\t\tthrow `Blank or '-' entered for line ${lineNum}, column ${colNum}`\n\t\t\t\t\t}\n\t\t\t\t\tif (foundProblem == true) throw `Invalid entry for line ${lineNum}, column ${colNum}`\n\t\t\t\t}\n\n\t\t\t\tconst termId = cols[term_idIndex]\n\t\t\t\tconst type = cols[typeIndex]\n\n\t\t\t\tterms[termId] = {\n\t\t\t\t\tid: termId,\n\t\t\t\t\tname: cols[nameIndex].trim().replace(/\"/g, ''),\n\t\t\t\t\tparent_id: cols[parIdIndex] != 'root' ? cols[parIdIndex] : null,\n\t\t\t\t\ttype: cols[typeIndex] != 'non graphable' ? cols[typeIndex] : null\n\t\t\t\t}\n\n\t\t\t\tparentIds.add(terms[termId].parent_id)\n\n\t\t\t\tif (type == 'categorical') {\n\t\t\t\t\tterms[termId].values = {}\n\t\t\t\t}\n\t\t\t\tconst values = cols[valuesIndex].trim().replace(/\"/g, '').split(';')\n\n\t\t\t\tfor (const x of values) {\n\t\t\t\t\tconst v = x.trim()\n\t\t\t\t\tif (v == '') continue\n\t\t\t\t\tconst segments = v.split('=')\n\t\t\t\t\tconst key = segments.shift()\n\t\t\t\t\tconst label = segments.join('=')\n\t\t\t\t\tif (!label) throw `Values=\"${v}\" in line ${lineNum} not in a key = value format.`\n\t\t\t\t\tif (!terms[termId].values) terms[termId].values = {}\n\t\t\t\t\tterms[termId].values[key] = { label: label }\n\t\t\t\t}\n\n\t\t\t\tconst numValues = Object.keys(terms[termId].values).length\n\t\t\t\tterms[termId].groupsetting = { disabled: numValues < 3 }\n\n\t\t\t\tvalidateNumericTermCategories(terms[termId])\n\t\t\t} catch (e) {\n\t\t\t\tthrow `Line ${lineNum} error: ${e}`\n\t\t\t}\n\t\t}\n\t\tfor (const t in terms) terms[t].isleaf = !parentIds.has(terms[t].id)\n\t}\n\n\tfunction parsePhenotree(lines, header) {\n\t\t/* \n\t\tParses phenotree:\n\t\t\t- Parses tab delim data arranged in cols: levels(n), variable (i.e. term_id), type, and categories \n\t\t\t(i.e. previous configuration) as well as unit.\n\t\t\t- Only the variable and type cols are required\n\t\t\t- Blank and '-' values for levels converted to null.\n\t\t\t- Assumptions:\n\t\t\t\t1. Headers required. `Variable', 'Type', 'Categories', and 'Unit' may appear anywhere. \n\t\t\t\t'Level_[XX]' for optional hierarchy/level columns. 'Unit' is optional for numeric terms.\n\t\t\t\t2. Levels are defined left to right, highest to lowest, and in order, no gaps.\n\t\t\t\t3. No blanks or '-' between levels as well as no duplicate values in the same line.\n\t\t\t\t4. No identical term ids\n\t\t\t\t5. All non-leaf names/ids must be unique. \n\t\t*/\n\t\tif (variableIndex == -1) {\n\t\t\tthrow `Missing required 'Variable' header`\n\t\t}\n\n\t\tconst typeIndex = header.findIndex(l => {\n\t\t\tconst v = l.trim().toLowerCase()\n\t\t\treturn v === 'type'\n\t\t})\n\t\tif (typeIndex == -1) {\n\t\t\tthrow `Missing required 'Type' header`\n\t\t}\n\n\t\tconst categoriesIndex = header.findIndex(l => l.toLowerCase().includes('categories'))\n\n\t\tconst levelColIndexes = header.map((c, i) => (c.toLowerCase().includes('level_') ? i : -1)).filter(i => i != -1)\n\t\t//If no level cols provided, use key/Variable col as single level. Will print the id as name\n\t\tif (!levelColIndexes.length) levelColIndexes.push(variableIndex)\n\n\t\tconst unitIndex = header.findIndex(l => l.toLowerCase().includes('unit'))\n\n\t\tconst sampleTypeIndex = header.findIndex(l => {\n\t\t\tconst v = l.trim().toLowerCase()\n\t\t\treturn v === 'sample_type'\n\t\t})\n\n\t\t// see below\n\t\tconst additionalAttrIndexes = header.findIndex(l => l.toLowerCase().includes('additional attributes'))\n\n\t\t// caching and/or tracking variables\n\t\tconst termNameToId = {}\n\t\tconst parentTermNames = new Set()\n\t\tconst parent2ChildOrder = new Map()\n\t\tparent2ChildOrder.set(null, [])\n\n\t\tfor (const [i, line] of lines.entries()) {\n\t\t\tif (i === 0) continue\n\t\t\tconst lineNum = i + 1\n\n\t\t\ttry {\n\t\t\t\tconst cols = line.split('\\t')\n\t\t\t\tconst levelNames = levelColIndexes.map(i => cols[i].trim().replace(/\"/g, '')).filter(c => c != '-')\n\t\t\t\tif (levelNames.length != new Set(levelNames).size) {\n\t\t\t\t\tthrow `Non-unique levels in line ${lineNum}: ${JSON.stringify(levelNames)}`\n\t\t\t\t}\n\n\t\t\t\t// Create map of immediate parents to children, in order of appearance\n\t\t\t\tfor (const [i, lvlName] of levelNames.entries()) {\n\t\t\t\t\t// Messy?? Is there an more elegant way?\n\t\t\t\t\tif (i == 0) {\n\t\t\t\t\t\tif (parent2ChildOrder.get(null).indexOf(lvlName) == -1) parent2ChildOrder.get(null).push(lvlName)\n\t\t\t\t\t}\n\t\t\t\t\tif (i != levelNames.length - 1) {\n\t\t\t\t\t\tif (!parent2ChildOrder.has(lvlName)) parent2ChildOrder.set(lvlName, [])\n\t\t\t\t\t}\n\t\t\t\t\tfor (const n of levelNames) {\n\t\t\t\t\t\tif (i == levelNames.indexOf(n) - 1) {\n\t\t\t\t\t\t\tif (parent2ChildOrder.get(lvlName).indexOf(n) == -1) parent2ChildOrder.get(lvlName).push(n)\n\t\t\t\t\t\t}\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\tconst name = levelNames.pop()\n\n\t\t\t\tconst firstDashIndex = cols.indexOf('-')\n\t\t\t\tif (firstDashIndex != -1 && firstDashIndex < cols.indexOf(name)) {\n\t\t\t\t\tthrow `Blank or '-' value detected between levels in line ${lineNum}`\n\t\t\t\t}\n\t\t\t\tconst term = parseCategories(cols[typeIndex], cols[categoriesIndex], lineNum, name)\n\n\t\t\t\tconst id = cols[variableIndex] || name\n\t\t\t\tif (id in terms) {\n\t\t\t\t\tconst orig = terms[id]\n\t\t\t\t\tthrow `Error: Multiple config rows for term.id='${id}': lines# ${orig.lineNum} and ${lineNum}`\n\t\t\t\t}\n\n\t\t\t\t//Create term object\n\t\t\t\tterms[id] = {\n\t\t\t\t\tid,\n\t\t\t\t\tname,\n\t\t\t\t\ttype: term.type,\n\t\t\t\t\tvalues: term.values,\n\t\t\t\t\tgroupsetting: term.groupsetting,\n\n\t\t\t\t\t// *** temporary attributes to be deleted later ***\n\t\t\t\t\tancestry: levelNames.slice(), // to be deleted later, used to fill in missing terms\n\t\t\t\t\tparent_name: levelNames.pop() || null, // will change this later to parent_id\n\t\t\t\t\tlineNum // to be deleted later\n\t\t\t\t}\n\n\t\t\t\t// pass additional properties to term obj\n\t\t\t\tif (cols[unitIndex] != null) terms[id].unit = cols[unitIndex]\n\t\t\t\tif (cols[sampleTypeIndex] != null) terms[id].sample_type = cols[sampleTypeIndex]\n\t\t\t\tif (cols[additionalAttrIndexes]) {\n\t\t\t\t\t/* file has additional attribute JSON column, and this line has value for it;\n\t\t\t\t\tdirectly assign json properties to the term object, no need to nest in \"term.attributes{}\"\n\t\t\t\t\te.g. default color scale for continuous mode for drug sensitivity terms\n\t\t\t\t\t*/\n\t\t\t\t\tObject.assign(terms[id], JSON.parse(cols[additionalAttrIndexes]))\n\t\t\t\t}\n\n\t\t\t\ttermNameToId[name] = id\n\t\t\t\tparentTermNames.add(terms[id].parent_name)\n\t\t\t} catch (e) {\n\t\t\t\tthrow `Line ${lineNum} error: ${e}`\n\t\t\t}\n\t\t}\n\t\t// some parent term levels may not have entries\n\t\ttrackMissingTerms(termNameToId, terms, parentTermNames, parent2ChildOrder)\n\n\t\tfor (const id in terms) {\n\t\t\tconst term = terms[id]\n\t\t\tterm.child_order = parent2ChildOrder.get(term.parent_name).indexOf(term.name) + 1\n\t\t\tterm.isleaf = !parentTermNames.has(term.name)\n\t\t\tterm.parent_id = termNameToId[term.parent_name] || null\n\t\t\tdelete term.parent_name\n\t\t\tdelete term.lineNum\n\t\t\t//term.ancestry = term.ancestry.map(name => termNameToId[name]).filter(d=>!!d)\n\t\t\tdelete term.ancestry\n\t\t}\n\t}\n\treturn { terms: Object.values(terms) }\n}\n\n/*\n **** Parsing Functions for Phenotree ****\n */\n\nfunction parseCategories(type, catJSON, lineNum, varName) {\n\tif (!type) throw `No type provided for variable: ${varName} on line ${lineNum}`\n\n\tconst term = {\n\t\ttype,\n\t\tvalues: catJSON == '' || catJSON == undefined ? {} : JSON.parse(catJSON)\n\t}\n\n\tvalidateNumericTermCategories(term)\n\n\tif (term.type == 'categorical') {\n\t\tconst numValues = Object.keys(term.values).length\n\t\tterm.groupsetting = { disabled: numValues < 3 }\n\t}\n\n\treturn term\n}\n\nfunction trackMissingTerms(termNameToId, terms, parentTermNames, parent2ChildOrder) {\n\tfor (const id in terms) {\n\t\tconst term = terms[id]\n\t\tfor (const [i, name] of term.ancestry.entries()) {\n\t\t\tif (name in termNameToId) {\n\t\t\t\t// a tsv line was already processed for this term\n\t\t\t\tconst id = termNameToId[name]\n\t\t\t\tconst ancestor = terms[id]\n\t\t\t\t/* if this term's ancestor has no level above it, previous processing of this ancestor\n\t\t\t\tshould also not have a term parent,\n\t\t\t\tOR if this ancestor another level above it,\n\t\t\t\tcheck that it is the same parent_term as previousy processed */\n\t\t\t\tif ((i - 1 < 0 && ancestor.parent_name) || ancestor.parent_name != term.ancestry[i - 1]) {\n\t\t\t\t\tthrow `Different parents for term=${name}, '${term.ancestry[i - 1]}' and '${ancestor.parent_name}'`\n\t\t\t\t}\n\t\t\t\tcontinue\n\t\t\t}\n\n\t\t\tterms[name] = {\n\t\t\t\tid: name,\n\t\t\t\tname,\n\t\t\t\tisleaf: false,\n\t\t\t\tancestry: term.ancestry.slice(0, i)\n\t\t\t}\n\n\t\t\tterms[name].parent_name = terms[name].ancestry.slice(-1)[0] || null\n\t\t\ttermNameToId[name] = name\n\t\t\tparentTermNames.add(name)\n\t\t}\n\t}\n}\n\nfunction validateNumericTermCategories(term) {\n\tif (term.type != 'integer' && term.type != 'float') return\n\t// term is numeric\n\tif (!term.values) return // .values{} is optional\n\tif (typeof term.values != 'object') throw 'numeric .values{} is not object'\n\t// values{} keys should be uncomputable categories, auto-assign the flag here\n\t// also make sure keys can be cast into numbers\n\tfor (const key in term.values) {\n\t\tif (key == '') throw 'Cannot use empty string as an uncomputable category'\n\t\t// key is not empty string\n\t\tconst tmp = Number(key)\n\t\tif (Number.isNaN(tmp)) {\n\t\t\t// this is by design so that all values in the db to match the column type for that value, otherwise the generated SQL statements would always have to include\n\t\t\tthrow `Uncomputable category of a numeric term is required to be a number (here uses non-numeric value of ${key}).`\n\t\t}\n\t\t// key is a valid category because it can be casted into a number\n\t\tterm.values[key].uncomputable = true\n\t}\n}\n", "import * as uiutils from '#dom/uiUtils'\nimport { appear } from '#dom/animation'\nimport { Tabs } from '../../dom/toggleButtons'\nimport { appInit } from '#mass/app'\nimport { parseDictionary } from './dictionary.parse'\nimport { sayerror } from '../client'\n\n/* \nLaunches MASS UI by uploading a custom data dictionary\n\n------ EXPORTED ------ \ninit_dictionaryUI()\n    - holder\n\n------ Internal ------ \nUI elements:\n\t- infoSection()\n\t- makeDataDictionaryTabs()\n\t\ta. makeTextEntryFilePathInput()\n\t\tb. makeFileUpload()\n\t\tc. makeCopyPasteInput()\n\t- submitButton()\n\nobj:{ data:[ {terms} ] }\n*/\n\nexport function init_databrowserUI(holder, debugmode) {\n\tconst wrapper = holder\n\t\t.append('div')\n\t\t.style('margin', '20px 20px 20px 40px')\n\t\t.style(\n\t\t\t'font-family',\n\t\t\t\"'Lucida Sans', 'Lucida Sans Regular', 'Lucida Grande', 'Lucida Sans Unicode', Geneva, Verdana, sans-serif\"\n\t\t)\n\t\t.style('place-items', 'center left')\n\t\t.style('overflow', 'hidden')\n\t\t.classed('sjpp-app-ui', true)\n\n\tconst obj = {}\n\n\t//Information section for user with documentation and example\n\tinfoSection(wrapper)\n\n\t//Data dictionary section\n\tmakeSectionHeader(wrapper, 'Data Dictionary')\n\tconst tabs_div = wrapper.append('div').style('margin-left', '2vw')\n\tmakeDataDictionaryTabs(tabs_div, obj)\n\n\t//Submit and reset button at the bottom.\n\tconst controlBtns_div = wrapper\n\t\t.append('div')\n\t\t.style('display', 'flex')\n\t\t.style('align-items', 'center')\n\t\t.style('margin', '40px 0px 40px 130px')\n\n\tsubmitButton(controlBtns_div, obj, wrapper, holder)\n\tuiutils.makeResetBtn(controlBtns_div, obj, '.databrowser_input')\n\n\t//Remove after testing\n\tif (debugmode) window.doms = obj\n\treturn obj\n}\n\nfunction infoSection(div) {\n\tdiv.append('div').style('margin', '10px').style('opacity', '0.65').html(`\n\t\t\t<ul>\n                <li>\n                    Please see the <a href=\"https://github.com/stjude/proteinpaint/wiki/Data-Browser\" target=\"_blank\">documentation</a> for more information.\n                </li>\n\t\t\t\t<li>\n\t\t\t\t\tDownload an example data dictionary <a href=\"https://proteinpaint.stjude.org/ppdemo/databrowser/dictionaryDemoData.tar.gz\" target=\"_self\" \"download>here</a>.\n\t\t\t\t</li>\n            </ul>`)\n}\n//Use function more as UI exapands\nfunction makeSectionHeader(div, text) {\n\tconst header = uiutils.makePrompt(div, text)\n\theader\n\t\t.style('font-size', '1.5em')\n\t\t.style('color', '#003366')\n\t\t.style('margin', '20px 10px 40px 10px')\n\t\t.classed('sjpp-databrowser-section-header', true)\n\tconst hr = div.append('hr')\n\thr.style('color', 'ligthgrey').style('margin', '-30px 0px 15px 0px').style('width', '50vw').style('opacity', '0.4')\n}\n\nfunction makeDataDictionaryTabs(tabs_div, obj) {\n\t// Creates the horizontal top tabs and callbacks for the data dictionary section\n\t// Rendering code and callback to the same parseDictionary().\n\t// All data parsed in client and returned to obj.data\n\tconst tabs = [\n\t\t{\n\t\t\tlabel: 'Select File',\n\t\t\tactive: true,\n\t\t\twidth: 95,\n\t\t\tcallback: async (event, tab) => {\n\t\t\t\ttab.contentHolder.style('border', 'none').style('display', 'block')\n\t\t\t\tappear(tab.contentHolder)\n\n\t\t\t\ttab.contentHolder\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.html(`<p style=\"margin-left: 10px; opacity: 0.65;\">Select a file from your computer.</p>`)\n\t\t\t\tmakeFileUpload(tab.contentHolder, obj)\n\n\t\t\t\tdelete tab.callback\n\t\t\t}\n\t\t},\n\t\t{\n\t\t\tlabel: 'Paste Data',\n\t\t\tactive: false,\n\t\t\twidth: 95,\n\t\t\tcallback: async (event, tab) => {\n\t\t\t\ttab.contentHolder.style('border', 'none').style('display', 'block')\n\t\t\t\tappear(tab.contentHolder)\n\n\t\t\t\ttab.contentHolder\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.html(\n\t\t\t\t\t\t`<p style=\"margin-left: 10px; opacity: 0.65;\">Paste data dictionary or phenotree in a tab delimited format.</p>`\n\t\t\t\t\t)\n\t\t\t\tmakeCopyPasteInput(tab.contentHolder, obj)\n\t\t\t\tdelete tab.callback\n\t\t\t}\n\t\t},\n\t\t{\n\t\t\tlabel: 'File Path',\n\t\t\tactive: false,\n\t\t\twidth: 95,\n\t\t\tcallback: async (event, tab) => {\n\t\t\t\ttab.contentHolder.style('border', 'none').style('display', 'block')\n\t\t\t\tappear(tab.contentHolder)\n\n\t\t\t\ttab.contentHolder\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.html(`<p style=\"margin-left: 10px; opacity: 0.65;\">Provide a URL file path.</p>`)\n\t\t\t\tuiutils.makePrompt(tab.contentHolder, 'URL')\n\t\t\t\tmakeTextEntryFilePathInput(tab.contentHolder, obj)\n\n\t\t\t\tdelete tab.callback\n\t\t\t}\n\t\t}\n\t]\n\tnew Tabs({ holder: tabs_div, tabs }).main()\n}\n\nfunction makeTextEntryFilePathInput(div, obj) {\n\t// Renders the file path input div and callback.\n\tconst filepath_div = div.append('div').style('display', 'inline-block')\n\tconst filepath = uiutils\n\t\t.makeTextInput(filepath_div)\n\t\t.style('border', '1px solid rgb(138, 177, 212)')\n\t\t.classed('databrowser_input', true)\n\t\t.on('keyup', async () => {\n\t\t\tconst data = filepath.property('value').trim()\n\t\t\tif (uiutils.isURL(data)) {\n\t\t\t\tconst txt = await fetch(data)\n\t\t\t\t\t.then(req => req.text())\n\t\t\t\t\t.then(txt => {\n\t\t\t\t\t\tobj.data = parseDictionary(txt)\n\t\t\t\t\t})\n\t\t\t} else {\n\t\t\t\t//TODO: implement serverside filepaths(?)\n\t\t\t}\n\t\t})\n}\n\nfunction makeFileUpload(div, obj) {\n\t// Renders the select file div and callback.\n\tconst upload_div = div.append('div').style('display', 'inline-block')\n\tconst upload = uiutils.makeFileUpload(upload_div).classed('databrowser_input', true)\n\tupload.on('change', event => {\n\t\tconst file = event.target.files[0]\n\t\tconst reader = new FileReader()\n\t\treader.onload = event => {\n\t\t\tobj.data = parseDictionary(event.target.result)\n\t\t}\n\t\treader.readAsText(file, 'utf8')\n\t})\n}\n\nfunction makeCopyPasteInput(div, obj) {\n\t// Renders the copy/paste div and callback.\n\tconst paste_div = div.append('div').style('display', 'block')\n\tconst paste = uiutils\n\t\t.makeTextAreaInput({ div: paste_div, rows: 10 })\n\t\t.style('border', '1px solid rgb(138, 177, 212)')\n\t\t.style('margin', '0px 0px 0px 20px')\n\t\t.classed('databrowser_input', true)\n\t\t.on('keyup', async () => {\n\t\t\tobj.data = parseDictionary(paste.property('value').trim())\n\t\t})\n}\n\n/*\n **** Submission Functions ****\n */\n\nfunction submitButton(div, obj, wrapper, holder) {\n\tconst submit = uiutils.makeBtn({\n\t\tdiv,\n\t\ttext: 'Create Data Browser',\n\t\tcolor: 'white',\n\t\tbackgroundColor: '#001aff',\n\t\tborder: '2px solid #001aff'\n\t})\n\tconst errorMessage_div = div.append('div')\n\tsubmit\n\t\t.style('margin-right', '10px')\n\t\t.style('font-size', '16px')\n\t\t.classed('sjpp-ui-submitBtn', true)\n\t\t.attr('type', 'submit')\n\t\t.on('click', () => {\n\t\t\tif (!obj.data || obj.data == undefined) {\n\t\t\t\tconst sayerrorDiv = errorMessage_div.append('div').style('display', 'inline-block').style('max-width', '20vw')\n\t\t\t\tsayerror(sayerrorDiv, 'Please provide data')\n\t\t\t\tsetTimeout(() => sayerrorDiv.remove(), 3000)\n\t\t\t} else {\n\t\t\t\twrapper.remove()\n\t\t\t\tappInit({\n\t\t\t\t\tholder: holder,\n\t\t\t\t\tstate: {\n\t\t\t\t\t\tvocab: {\n\t\t\t\t\t\t\tterms: obj.data.terms\n\t\t\t\t\t\t},\n\t\t\t\t\t\tplots: [\n\t\t\t\t\t\t\t{\n\t\t\t\t\t\t\t\tchartType: 'dictionary'\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t]\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\t\t})\n}\n"],
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-  "names": ["lines", "header", "i", "id", "makeFileUpload", "txt", "event"]
-}

package/dist/dictionary-P5JGXQSW.js

@@ -1,109 +0,0 @@
-import {
-  appInit
-} from "./chunk-3YQYWX4M.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-R3RD3VEX.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-KBTFT76L.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// plots/dictionary.js
-var MassDict = class _MassDict {
-  static type = "tree";
-  constructor(opts) {
-    this.type = _MassDict.type;
-    this.dom = {
-      holder: opts.holder.style("padding", "20px"),
-      header: opts.header
-    };
-  }
-  async init(appState) {
-    const config = appState.plots.find((p) => p.id === this.id) || {};
-    const opts = {
-      vocabApi: this.app.vocabApi,
-      holder: this.dom.holder,
-      state: this.getState(appState),
-      tree: {
-        click_term: (_term) => {
-          const term = _term.term || _term;
-          const _config = Object.assign({}, config?.spawnConfig, {
-            chartType: term.type == "survival" ? "survival" : "summary",
-            term: _term.term ? _term : { term }
-          });
-          this.app.dispatch({
-            type: "plot_create",
-            config: _config
-          });
-          this.app.dispatch({
-            type: "plot_delete",
-            id: this.id
-          });
-        }
-      }
-    };
-    if (config?.tree?.usecase) {
-      opts.tree.usecase = config.tree.usecase;
-    }
-    this.dom.holder.style("position", "relative");
-    const loadingDiv = this.dom.holder.append("div").attr("class", "sjpp-loading-overlay").style("display", "");
-    loadingDiv.append("div").attr("class", "sjpp-spinner");
-    try {
-      this.tree = await appInit(opts);
-    } finally {
-      loadingDiv.remove();
-    }
-  }
-  getState(appState) {
-    const config = appState.plots.find((p) => p.id === this.id) || {};
-    const tree = { usecase: { target: "dictionary" } };
-    if (config?.tree?.usecase?.specialCase) {
-      tree.usecase.specialCase = config.tree.usecase.specialCase;
-    }
-    return {
-      tree,
-      vocab: appState.vocab,
-      activeCohort: appState.activeCohort,
-      termfilter: appState.termfilter,
-      selectdTerms: appState.selectedTerms,
-      customTerms: appState.customTerms
-    };
-  }
-  main() {
-    if (this.dom.header) this.dom.header.text("Data Variables");
-    this.tree.dispatch({
-      type: "app_refresh",
-      state: this.state
-    });
-  }
-};
-var dictInit = getCompInit(MassDict);
-var componentInit = dictInit;
-function getPlotConfig(opts, app) {
-  const config = { hidePlotFilter: true };
-  return copyMerge(config, opts);
-}
-export {
-  componentInit,
-  dictInit,
-  getPlotConfig
-};
-//# sourceMappingURL=dictionary-P5JGXQSW.js.map

package/dist/dnaMethylation-ZNR5U6HS.js

@@ -1,29 +0,0 @@
-import {
-  SearchHandler
-} from "./chunk-MG5U4JYY.js";
-import "./chunk-3YQYWX4M.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-R3RD3VEX.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-KBTFT76L.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  SearchHandler
-};
-//# sourceMappingURL=dnaMethylation-ZNR5U6HS.js.map