@sjcrh/proteinpaint-client 2.224.1 → 2.224.2

package/dist/NumContEditor.unit.spec-JDSSEJLJ.js

@@ -1,160 +0,0 @@
-import {
-  agedx
-} from "./chunk-32AI7I4C.js";
-import {
-  termjson
-} from "./chunk-CWWE77DH.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import {
-  NumericHandler
-} from "./chunk-3A2CWTBI.js";
-import "./chunk-HQNH2UX6.js";
-import {
-  TwRouter
-} from "./chunk-3YQYWX4M.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-R3RD3VEX.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-KBTFT76L.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termsetting/handlers/test/NumContEditor.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-async function getNumericHandler(opts = {}) {
-  const term = JSON.parse(JSON.stringify(termjson.agedx));
-  const rawTw = {
-    term,
-    q: {
-      mode: "continuous"
-    }
-  };
-  const tw = await TwRouter.initRaw(rawTw);
-  const handler = new NumericHandler({
-    termsetting: {
-      tw,
-      term: rawTw.term,
-      q: rawTw.q,
-      opts: {
-        numericEditMenuVersion: ["continuous", "discrete", "binary", "spline"],
-        usecase: opts.usecase
-      },
-      api: {
-        runCallback() {
-        }
-      },
-      dom: {
-        tip: {
-          hide() {
-          }
-        }
-      },
-      vocabApi: {
-        getViolinBox() {
-          return agedx;
-        }
-      }
-    }
-  });
-  const holder = select_default("body").append("div").style("position", "relative").style("width", "fit-content").style("margin", "20px").style("padding", "5px").style("border", "1px solid #000");
-  await handler.setEditHandler(handler.tabs[0]);
-  return {
-    rawTw,
-    tw,
-    handler,
-    editHandler: handler.editHandler,
-    holder,
-    destroy: () => {
-      if ("destroy" in handler.editHandler) handler.editHandler.destroy();
-      if (typeof handler.destroy == "function") handler.destroy();
-      holder.remove();
-    }
-  };
-}
-(0, import_tape.default)("\n", (test) => {
-  test.comment("-***- NumContEditor.unit.spec -***-");
-  test.end();
-});
-(0, import_tape.default)("no opts.usecase", async (test) => {
-  const { editHandler, holder, destroy } = await getNumericHandler();
-  await editHandler.showEditMenu(holder);
-  test.equal(editHandler.dom?.density_div.selectAll("svg").size(), 1, `should render a density plot svg`);
-  test.equal(
-    editHandler.dom.inputsDiv.selectAll("option").size(),
-    4,
-    `should render scale dropdown with the expected number of options`
-  );
-  test.equal(
-    editHandler.dom.inputsDiv.selectAll(`input[type='checkbox']`).size(),
-    0,
-    `should not render a checkbox for z-score conversion`
-  );
-  const scaleValue = 100;
-  editHandler.dom?.scaleSelect.property("value", scaleValue);
-  editHandler.dom?.scaleSelect.node().dispatchEvent(new Event("change", { bubbles: true }));
-  test.equal(editHandler.q.scale, scaleValue, `should set q.scale to ${scaleValue}`);
-  test.deepEqual(
-    editHandler.getEditedQ(),
-    { mode: "continuous", isAtomic: true, hiddenValues: {}, scale: 100 },
-    `should give the expected edited q object`
-  );
-  if (test._ok) destroy();
-  test.end();
-});
-(0, import_tape.default)(`opts.usecase={target: 'matrix'}`, async (test) => {
-  const { editHandler, holder, destroy } = await getNumericHandler({ usecase: { target: "matrix" } });
-  await editHandler.showEditMenu(holder);
-  test.equal(editHandler.dom?.density_div.selectAll("svg").size(), 1, `should render a density plot svg`);
-  test.equal(
-    editHandler.dom?.inputsDiv.selectAll("option").size(),
-    4,
-    `should render scale dropdown with the expected number of options`
-  );
-  test.equal(
-    editHandler.dom?.inputsDiv.selectAll(`input[type='checkbox']`).size(),
-    1,
-    `should render a checkbox for z-score conversion`
-  );
-  const scaleValue = 1e3;
-  editHandler.dom.scaleSelect.property("value", scaleValue);
-  editHandler.dom.scaleSelect.node().dispatchEvent(new Event("change", { bubbles: true }));
-  editHandler.dom.convert2ZCheckbox.property("checked", true);
-  editHandler.dom.convert2ZCheckbox.node().dispatchEvent(new Event("input", { bubbles: true }));
-  test.equal(editHandler.q.scale, void 0, `should delete q.scale when convert2ZCheckbox is checked`);
-  editHandler.dom.scaleSelect.property("value", scaleValue);
-  editHandler.dom.scaleSelect.node().dispatchEvent(new Event("change", { bubbles: true }));
-  test.equal(
-    editHandler.dom.convert2ZCheckbox.property("checked"),
-    false,
-    `should set convert2ZCheckbox to false when scale is set to >1`
-  );
-  test.deepEqual(
-    editHandler.getEditedQ(),
-    { mode: "continuous", isAtomic: true, hiddenValues: {}, convert2ZScore: false, scale: 1e3 },
-    `should give the expected edited q object`
-  );
-  if (test._ok) destroy();
-  test.end();
-});
-//# sourceMappingURL=NumContEditor.unit.spec-JDSSEJLJ.js.map

package/dist/NumCustomBinEditor-E2FJNISZ.js

@@ -1,29 +0,0 @@
-import {
-  NumCustomBinEditor
-} from "./chunk-RRKUFU4L.js";
-import "./chunk-3YQYWX4M.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-R3RD3VEX.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-KBTFT76L.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  NumCustomBinEditor
-};
-//# sourceMappingURL=NumCustomBinEditor-E2FJNISZ.js.map

package/dist/NumCustomBinEditor.unit.spec-26GWME2W.js

@@ -1,393 +0,0 @@
-import {
-  agedx
-} from "./chunk-32AI7I4C.js";
-import {
-  termjson
-} from "./chunk-CWWE77DH.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import {
-  NumericHandler
-} from "./chunk-3A2CWTBI.js";
-import "./chunk-HQNH2UX6.js";
-import {
-  TwRouter
-} from "./chunk-3YQYWX4M.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-R3RD3VEX.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-RIHO7ZD5.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-KBTFT76L.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-MHWYRNGA.js";
-import "./chunk-JHLF2ZC2.js";
-import "./chunk-WJLRU5OF.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termsetting/handlers/test/NumCustomBinEditor.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-var pct50 = 6.3475409836;
-var pct70 = 1000.36986301355;
-var DAY_TO_YEAR = 1 / 365.25;
-function getConvertedTerm() {
-  const term = JSON.parse(JSON.stringify(termjson.agedx));
-  term.valueConversion = { fromUnit: "day", toUnit: "year", scaleFactor: DAY_TO_YEAR };
-  return term;
-}
-async function getNumericHandler(opts = {}) {
-  const term = opts.term || JSON.parse(JSON.stringify(termjson.agedx));
-  const rawTw = {
-    term,
-    q: {
-      mode: "discrete",
-      type: "custom-bin",
-      preferredBins: "median"
-    }
-  };
-  let handler = {};
-  const vocabApi = {
-    state: {
-      termfilter: { filter: { type: "tvslst", in: "", lst: [] } }
-    },
-    getViolinBox() {
-      return agedx;
-    },
-    getPercentile() {
-      return {
-        values: handler?.editHandler?.q.cutoffPercentile === 70 ? [pct70] : [pct50]
-      };
-    }
-  };
-  const tw = await TwRouter.initRaw(rawTw, { vocabApi });
-  handler = new NumericHandler({
-    termsetting: {
-      tw,
-      term: rawTw.term,
-      q: rawTw.q,
-      opts: {
-        numericEditMenuVersion: ["discrete"],
-        usecase: opts.usecase
-      },
-      api: {
-        runCallback() {
-        }
-      },
-      dom: {
-        tip: {
-          hide() {
-          }
-        }
-      },
-      vocabApi
-    }
-  });
-  handler.density_data = { min: agedx.min, max: agedx.max };
-  const holder = select_default("body").append("div").style("position", "relative").style("width", "fit-content").style("margin", "20px").style("padding", "5px").style("border", "1px solid #000");
-  handler.dom.editDiv = holder;
-  await handler.setEditHandler(handler.tabs[0]);
-  const binsEditor = handler.editHandler.editorsByType["custom-bin"];
-  return {
-    rawTw,
-    tw,
-    handler,
-    editHandler: handler.editHandler,
-    binsEditor,
-    holder,
-    destroy: () => {
-      if ("destroy" in handler.editHandler) handler.editHandler.destroy();
-      if (typeof handler.destroy == "function") handler.destroy();
-      holder.remove();
-    }
-  };
-}
-function simulateDrag(elem, xOffset) {
-  const box = elem.getBoundingClientRect();
-  for (const [type, clientX] of [
-    ["mousedown", box.x],
-    ["mousemove", box.x + xOffset],
-    ["mouseup", box.x + xOffset]
-  ]) {
-    elem.dispatchEvent(new MouseEvent(type, { bubbles: true, cancelable: true, clientX, clientY: box.y, view: window }));
-  }
-}
-(0, import_tape.default)("\n", (test) => {
-  test.comment("-***- NumCustomBinEditor.unit.spec -***-");
-  test.end();
-});
-(0, import_tape.default)("handler methods", async (test) => {
-  const { binsEditor, destroy } = await getNumericHandler();
-  test.deepEqual(
-    binsEditor.getDefaultQ(),
-    {
-      mode: "discrete",
-      type: "custom-bin",
-      isAtomic: true,
-      lst: [
-        {
-          startunbounded: true,
-          stop: 6.35,
-          stopinclusive: false,
-          label: "<6.35",
-          range: '<span style="font-family:Times;font-style:italic;">x</span> <6.35'
-        },
-        {
-          start: 6.35,
-          startinclusive: true,
-          stopunbounded: true,
-          label: "\u22656.35",
-          range: '<span style="font-family:Times;font-style:italic;">x</span> \u22656.35'
-        }
-      ],
-      hiddenValues: {}
-    },
-    `should give the expected default tw.q object`
-  );
-  binsEditor.tw.q = { mode: "continuous" };
-  test.deepEqual(
-    binsEditor.getDefaultQ(),
-    {
-      mode: "discrete",
-      type: "custom-bin",
-      lst: [
-        {
-          startunbounded: true,
-          startinclusive: false,
-          stopinclusive: false,
-          stop: 2355,
-          label: "<2355",
-          range: '<span style="font-family:Times;font-style:italic;">x</span> <2355'
-        },
-        {
-          stopunbounded: true,
-          startinclusive: true,
-          stopinclusive: false,
-          start: 2355,
-          label: "\u22652355",
-          range: '<span style="font-family:Times;font-style:italic;">x</span> \u22652355'
-        }
-      ]
-    },
-    `should give the expected default tw.q object if the mode is not discrete`
-  );
-  if (test._ok) destroy();
-  test.end();
-});
-(0, import_tape.default)("initial rendered UI", async (test) => {
-  const { editHandler, binsEditor, holder, destroy } = await getNumericHandler();
-  await editHandler.showEditMenu(holder);
-  test.equal(binsEditor.dom.customBinBoundaryInput?.size(), 1, `should render a textarea input for custom bin entries`);
-  const textInputs = binsEditor.dom.inputsDiv.node().querySelectorAll(`input[type='text']`);
-  test.equal(textInputs.length, 2, `should render 2 number inputs to match tw.q.lst[]`);
-  const ranges = binsEditor.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
-  test.equal(ranges[0].innerText, "x <6.35", `should render the expected first bin range`);
-  test.equal(ranges[1].innerText, "x \u22656.35", `should render the expected last bin range`);
-  const binInputs = binsEditor.dom.inputsDiv.node().querySelectorAll("input");
-  test.equal(binInputs[0].value, "<6.35", `should render the expected first bin input value`);
-  test.equal(binInputs[1].value, "\u22656.35", `should render the expected last bin input value`);
-  if (test._ok) destroy();
-  test.end();
-});
-(0, import_tape.default)("edit interactivity", async (test) => {
-  const { editHandler, binsEditor, holder, destroy } = await getNumericHandler();
-  await editHandler.showEditMenu(holder);
-  const newKnots = [10, 200, 600, 3e3];
-  binsEditor.dom.customBinBoundaryInput.property("value", newKnots.join("\n"));
-  binsEditor.dom.customBinBoundaryInput.node().dispatchEvent(new Event("change", { bubbles: true }));
-  const lines = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
-  test.deepEqual(
-    lines.map((l) => l.getAttribute("x1")),
-    ["11", "31", "74", "328"],
-    `should re-render the draggable lines in the updated x-positions`
-  );
-  const input0 = binsEditor.dom.customBinLabelInput.node();
-  input0.value = "- TEST -";
-  input0.dispatchEvent(new Event("change", { bubbles: true }));
-  test.deepEqual(
-    binsEditor.getEditedQ(false),
-    {
-      mode: "discrete",
-      type: "custom-bin",
-      lst: [
-        {
-          startunbounded: true,
-          stop: 10,
-          startinclusive: false,
-          stopinclusive: true,
-          label: "- TEST -",
-          range: '<span style="font-family:Times;font-style:italic;">x</span> \u226410'
-        },
-        {
-          start: 10,
-          startinclusive: false,
-          stopinclusive: true,
-          stop: 200,
-          label: ">10 to 200",
-          range: '10 < <span style="font-family:Times;font-style:italic;">x</span> \u2264 200'
-        },
-        {
-          start: 200,
-          startinclusive: false,
-          stopinclusive: true,
-          stop: 600,
-          label: ">200 to 600",
-          range: '200 < <span style="font-family:Times;font-style:italic;">x</span> \u2264 600'
-        },
-        {
-          start: 600,
-          startinclusive: false,
-          stopinclusive: true,
-          stop: 3e3,
-          label: ">600 to 3000",
-          range: '600 < <span style="font-family:Times;font-style:italic;">x</span> \u2264 3000'
-        },
-        {
-          start: 3e3,
-          startinclusive: false,
-          stopinclusive: false,
-          stopunbounded: true,
-          label: ">3000",
-          range: '<span style="font-family:Times;font-style:italic;">x</span> >3000'
-        }
-      ]
-    },
-    `should give the expected edited q object`
-  );
-  const inputsDiv = binsEditor.dom.inputsDiv.node();
-  await binsEditor.render(editHandler.dom.binsDiv.node().firstChild);
-  test.equal(
-    inputsDiv,
-    binsEditor.dom.inputsDiv.node(),
-    `should not re-render the menu when the holder has not changed`
-  );
-  editHandler.undoEdits();
-  {
-    const lines2 = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
-    test.equal(lines2.length, 1, `should render 1 draggable line in the density plot`);
-    test.deepEqual(
-      lines2.map((l) => l.getAttribute("x1")),
-      ["11"],
-      `should render the draggable lines in the expected x-positions`
-    );
-  }
-  if (test._ok) destroy();
-  test.end();
-});
-(0, import_tape.default)("dragging a boundary line with more than one boundary", async (test) => {
-  const { editHandler, binsEditor, holder, destroy } = await getNumericHandler();
-  await editHandler.showEditMenu(holder);
-  binsEditor.dom.customBinBoundaryInput.property("value", [10, 200].join("\n"));
-  binsEditor.dom.customBinBoundaryInput.node().dispatchEvent(new Event("change", { bubbles: true }));
-  const drag = (value) => binsEditor.getBoundaryOpts().callback({ index: 1 }, value);
-  drag(500);
-  drag(500);
-  test.equal(
-    binsEditor.dom.customBinBoundaryInput.property("value"),
-    "10\n500",
-    `should list one boundary per line, keeping the boundary that was not dragged`
-  );
-  test.deepEqual(
-    binsEditor.q.lst.map((bin) => "start" in bin ? bin.start : null),
-    [null, 10, 500],
-    `should keep every bin, moving only the dragged boundary`
-  );
-  if (test._ok) destroy();
-  test.end();
-});
-(0, import_tape.default)("dragging a bin boundary line towards its neighboring line", async (test) => {
-  const { editHandler, binsEditor, holder, destroy } = await getNumericHandler();
-  await editHandler.showEditMenu(holder);
-  binsEditor.dom.customBinBoundaryInput.property("value", [10, 200].join("\n"));
-  binsEditor.dom.customBinBoundaryInput.node().dispatchEvent(new Event("change", { bubbles: true }));
-  const getLines = () => [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
-  const getBoundaries = () => binsEditor.dom.customBinBoundaryInput.property("value").split("\n");
-  test.equal(getLines().length, 2, `should render one line per boundary`);
-  simulateDrag(getLines()[0], 400);
-  test.deepEqual(getBoundaries(), ["188.4", "200"], `should stop the dragged boundary below the neighboring one`);
-  test.deepEqual(
-    binsEditor.q.lst.map((bin) => "start" in bin ? bin.start : null),
-    [null, 188.4, 200],
-    `should keep every bin when a drag is stopped at the neighboring line`
-  );
-  test.equal(getLines().length, 2, `should keep one line per boundary when a drag is stopped at the neighboring line`);
-  simulateDrag(getLines()[0], -10);
-  test.deepEqual(getBoundaries(), ["94.2", "200"], `should move only the dragged boundary`);
-  test.deepEqual(
-    binsEditor.q.lst.map((bin) => "start" in bin ? bin.start : null),
-    [null, 94.2, 200],
-    `should keep every bin, moving only the dragged boundary`
-  );
-  if (test._ok) destroy();
-  test.end();
-});
-(0, import_tape.default)("returning to the tab with unapplied bin boundary edits", async (test) => {
-  const { editHandler, binsEditor, holder, destroy } = await getNumericHandler();
-  await editHandler.showEditMenu(holder);
-  binsEditor.dom.customBinBoundaryInput.property("value", [10, 200].join("\n"));
-  binsEditor.dom.customBinBoundaryInput.node().dispatchEvent(new Event("change", { bubbles: true }));
-  const getLineXs = () => [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")].map((l) => l.getAttribute("x1"));
-  const editedLineXs = getLineXs();
-  await binsEditor.render(editHandler.dom.binsDiv.node().firstChild);
-  test.deepEqual(getLineXs(), editedLineXs, `should leave the boundary lines at the edited positions`);
-  test.equal(
-    binsEditor.dom.customBinBoundaryInput.property("value"),
-    "10\n200",
-    `should leave the edited bin boundaries in the textarea`
-  );
-  test.deepEqual(
-    binsEditor.q.lst.map((bin) => "start" in bin ? bin.start : null),
-    [null, 10, 200],
-    `should leave the bins parsed from the edits in q`
-  );
-  if (test._ok) destroy();
-  test.end();
-});
-(0, import_tape.default)("converted term", async (test) => {
-  const { editHandler, binsEditor, holder, destroy } = await getNumericHandler({ term: getConvertedTerm() });
-  await editHandler.showEditMenu(holder);
-  test.equal(
-    binsEditor.dom.customBinBoundaryInput.property("value"),
-    String(Number((pct50 * DAY_TO_YEAR).toFixed(2))),
-    `should fill the boundary textarea in years`
-  );
-  binsEditor.dom.customBinBoundaryInput.property("value", [5, 10].join("\n"));
-  binsEditor.dom.customBinBoundaryInput.node().dispatchEvent(new Event("change", { bubbles: true }));
-  test.deepEqual(
-    binsEditor.q.lst.map((bin) => "start" in bin ? bin.start : null),
-    [null, 1826.25, 3652.5],
-    `should store boundaries typed in years as days`
-  );
-  const editedQ = binsEditor.getEditedQ(false);
-  test.deepEqual(
-    editedQ.lst.map((bin) => ({ start: "start" in bin ? bin.start : null, stop: "stop" in bin ? bin.stop : null })),
-    [
-      { start: null, stop: 1826.25 },
-      { start: 1826.25, stop: 3652.5 },
-      { start: 3652.5, stop: null }
-    ],
-    `should give an edited q whose bins are in days`
-  );
-  test.deepEqual(
-    editedQ.lst.map((bin) => bin.label),
-    ["\u22645y", ">5y to 10y", ">10y"],
-    `should label the bins in years`
-  );
-  if (test._ok) destroy();
-  test.end();
-});
-//# sourceMappingURL=NumCustomBinEditor.unit.spec-26GWME2W.js.map