@sjcrh/proteinpaint-client 2.216.0 → 2.217.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (956) hide show
  1. package/dist/2dmaf-RRHATFHO.js +1362 -0
  2. package/dist/AggMatrixInput-4UHBCXYH.js +402 -0
  3. package/dist/AggregateMatrix-IJE5CM5Y.js +37 -0
  4. package/dist/AppHeader-UXGLRW6C.js +826 -0
  5. package/dist/BoxPlot-GQYC22KY.js +1233 -0
  6. package/dist/CorrelationVolcano-5CWRWZTI.js +613 -0
  7. package/dist/Cuminc-TYHKAPRK.js +1217 -0
  8. package/dist/DE-UUFQGSOI.js +85 -0
  9. package/dist/DEinput-DU7MF4YY.js +497 -0
  10. package/dist/DM-SSI5KUBC.js +86 -0
  11. package/dist/DifferentialAnalysis-G6FE2MXY.js +235 -0
  12. package/dist/Disco-B3KGNEAW.js +3384 -0
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  14. package/dist/DmrPlot-27NGDMT4.js +358 -0
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  17. package/dist/GeneExpInput-NDXISF2U.js +38 -0
  18. package/dist/Geomap-3CNT227W.js +80 -0
  19. package/dist/HicApp-VQBUB6EZ.js +2240 -0
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  21. package/dist/NumBinaryEditor-IVZ4MMQT.js +274 -0
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  25. package/dist/NumCustomBinEditor-UEEYZ4ZO.js +29 -0
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  37. package/dist/ProteomeInput-NYPUYVN5.js +610 -0
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  166. package/dist/condition-SGJIDZNB.js +323 -0
  167. package/dist/controls-JQCMGPXP.js +30 -0
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  170. package/dist/customdata.inputui-LGTGMJBZ.js +280 -0
  171. package/dist/dataDownload-FAWN2WKE.js +325 -0
  172. package/dist/databrowser.ui-KF3LWQXG.js +421 -0
  173. package/dist/dictionary-EVLEOT72.js +109 -0
  174. package/dist/dnaMethylation-J3SPEM4S.js +29 -0
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  181. package/dist/gb-YDEOK7NW.js +77 -0
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  841. /package/dist/{junction.unit.spec-VU665JWH.js.map → junction.unit.spec-F35E3GJW.js.map} +0 -0
  842. /package/dist/{launch.adhoc-PG2VDOP5.js.map → launch.adhoc-V2HTCQGD.js.map} +0 -0
  843. /package/dist/{leftlabel.sample-O4EI4FEW.js.map → leftlabel.sample-V7O2EC36.js.map} +0 -0
  844. /package/dist/{lollipop-LWQ3ZPUC.js.map → lollipop-RNRZLG64.js.map} +0 -0
  845. /package/dist/{maf-Z7IN4HAW.js.map → maf-W6SF6BJS.js.map} +0 -0
  846. /package/dist/{maftimeline-AQLIVUW3.js.map → maftimeline-NABCAMHG.js.map} +0 -0
  847. /package/dist/{matrix-LTXFBGFW.js.map → matrix-JC6AJT2N.js.map} +0 -0
  848. /package/dist/{matrix-W2XR54DY.js.map → matrix-UCHESWVK.js.map} +0 -0
  849. /package/dist/{matrix.cells-F44JHGOO.js.map → matrix.cells-B4L42TBM.js.map} +0 -0
  850. /package/dist/{matrix.config-Y5OUBSEC.js.map → matrix.config-6US3AAH7.js.map} +0 -0
  851. /package/dist/{matrix.data-VLIW75OR.js.map → matrix.data-FYFXYDA3.js.map} +0 -0
  852. /package/dist/{matrix.groups-QEWUDMPF.js.map → matrix.groups-Y7DEG3GS.js.map} +0 -0
  853. /package/dist/{matrix.integration.spec-24DH4HNF.js.map → matrix.integration.spec-KXX7SFX5.js.map} +0 -0
  854. /package/dist/{matrix.interactivity-R3BQYXAY.js.map → matrix.interactivity-NHWG4WCC.js.map} +0 -0
  855. /package/dist/{matrix.layout-TENBEUJ6.js.map → matrix.layout-5DQNT7DD.js.map} +0 -0
  856. /package/dist/{matrix.legend-E35GDZWD.js.map → matrix.legend-OY7IF6AS.js.map} +0 -0
  857. /package/dist/{matrix.renderers-CMPAIUYT.js.map → matrix.renderers-GYOXGHPU.js.map} +0 -0
  858. /package/dist/{matrix.serieses-GXVQBJML.js.map → matrix.serieses-657TLDAV.js.map} +0 -0
  859. /package/dist/{matrix.sort-VQS6E6S5.js.map → matrix.sort-IMA2ES3T.js.map} +0 -0
  860. /package/dist/{matrix.sort.unit.spec-P5C6EVDC.js.map → matrix.sort.unit.spec-S6BAFYPR.js.map} +0 -0
  861. /package/dist/{matrix.sorterUi-4R2TVBUJ.js.map → matrix.sorterUi-77F36Q5H.js.map} +0 -0
  862. /package/dist/{matrix.sorterUi.unit.spec-UMI2N2OG.js.map → matrix.sorterUi.unit.spec-V5NVQGD5.js.map} +0 -0
  863. /package/dist/{matrix.unit.spec-HSA7OWME.js.map → matrix.unit.spec-R4NMTZYQ.js.map} +0 -0
  864. /package/dist/{mavb-ZARQZJJR.js.map → mavb-MRCVMBPD.js.map} +0 -0
  865. /package/dist/{mds.fimo-YRNNY5KA.js.map → mds.fimo-5DCH5BEM.js.map} +0 -0
  866. /package/dist/{mds.samplescatterplot-ESIALOMA.js.map → mds.samplescatterplot-VIBCS5M6.js.map} +0 -0
  867. /package/dist/{mds.survivalplot-5E6ITKIU.js.map → mds.survivalplot-AZ7LJDZZ.js.map} +0 -0
  868. /package/dist/{multivalue-CT2QWWB4.js.map → multivalue-4QKGYYW2.js.map} +0 -0
  869. /package/dist/{numericDictTermCluster-CRVSJ6PI.js.map → numericDictTermCluster-GLLG6IK2.js.map} +0 -0
  870. /package/dist/{oncomatrix-MX5EHBNW.js.map → oncomatrix-R32ZPMX7.js.map} +0 -0
  871. /package/dist/{oncomatrix.spec-DN2RAWGZ.js.map → oncomatrix.spec-BMK6LMBS.js.map} +0 -0
  872. /package/dist/{plot.2dvaf-B5QAKDTK.js.map → plot.2dvaf-46FT53MF.js.map} +0 -0
  873. /package/dist/{plot.app-V5DZWC6N.js.map → plot.app-7EE4YCV4.js.map} +0 -0
  874. /package/dist/{plot.barplot-VAJLAU7H.js.map → plot.barplot-FK4J2G7K.js.map} +0 -0
  875. /package/dist/{plot.boxplot-PT3BUNVT.js.map → plot.boxplot-ATY4LK3X.js.map} +0 -0
  876. /package/dist/{plot.brainImaging-2WB7XJJM.js.map → plot.brainImaging-S7B547V4.js.map} +0 -0
  877. /package/dist/{plot.disco-64IPBCII.js.map → plot.disco-K5MMC2GD.js.map} +0 -0
  878. /package/dist/{plot.ssgq-ET4OBMUM.js.map → plot.ssgq-B3OVMZFD.js.map} +0 -0
  879. /package/dist/{plot.vaf2cov-DGMVJ7UN.js.map → plot.vaf2cov-RBHDQULW.js.map} +0 -0
  880. /package/dist/{polar2-CWWDVNZQ.js.map → polar2-GECELCTG.js.map} +0 -0
  881. /package/dist/{profileForms-FM7D4WO2.js.map → profileForms-2USYOA34.js.map} +0 -0
  882. /package/dist/{profilePlot-LQ6K4EXX.js.map → profilePlot-YGD2CF6P.js.map} +0 -0
  883. /package/dist/{pseudbulk.unit.spec-IAONX4QR.js.map → pseudbulk.unit.spec-UVVRP6NR.js.map} +0 -0
  884. /package/dist/{pseudobulk-NIX4JOOZ.js.map → pseudobulk-ZIN5VJGB.js.map} +0 -0
  885. /package/dist/{qualitative-M3XSQZA2.js.map → qualitative-27BZGASV.js.map} +0 -0
  886. /package/dist/{qualitative-GLTKWA6H.js.map → qualitative-N4F6NITI.js.map} +0 -0
  887. /package/dist/{radar2-JBULXNFQ.js.map → radar2-X465RPJX.js.map} +0 -0
  888. /package/dist/{radarFacility2-YYIBHZCY.js.map → radarFacility2-AE7BA62N.js.map} +0 -0
  889. /package/dist/{rememberedGvQ.unit.spec-YJV6DVPN.js.map → rememberedGvQ.unit.spec-4PDIU5RY.js.map} +0 -0
  890. /package/dist/{render-ZCH7R3WL.js.map → render-TD2QWOHT.js.map} +0 -0
  891. /package/dist/{report-YPIAIMND.js.map → report-3Y2OWDF7.js.map} +0 -0
  892. /package/dist/{sampleView-K4GSYMAE.js.map → sampleView-BUMMYRHJ.js.map} +0 -0
  893. /package/dist/{samplelst-F2SLVHFP.js.map → samplelst-BWK53BLI.js.map} +0 -0
  894. /package/dist/{samplematrix-Z6F4F7YN.js.map → samplematrix-RQU43UYR.js.map} +0 -0
  895. /package/dist/{sc-UM7SEGED.js.map → sc-LCBFWCZZ.js.map} +0 -0
  896. /package/dist/{scatter-63XRRLGP.js.map → scatter-6S5I7OW3.js.map} +0 -0
  897. /package/dist/{scatter-HFTYLGDP.js.map → scatter-MJELX75N.js.map} +0 -0
  898. /package/dist/{selectGenomeWithTklst-PJNALPM2.js.map → selectGenomeWithTklst-WAVXHXR5.js.map} +0 -0
  899. /package/dist/{singleCellCellType-HR3R6KBD.js.map → singleCellCellType-WMCAJ7JF.js.map} +0 -0
  900. /package/dist/{singleCellCellType.unit.spec-VK57HQ2O.js.map → singleCellCellType.unit.spec-4Z46ZT5Q.js.map} +0 -0
  901. /package/dist/{singleCellGeneExpression-VWOA7MLN.js.map → singleCellGeneExpression-7Q5ZJT4R.js.map} +0 -0
  902. /package/dist/{singleCellGeneExpression.unit.spec-YP64T3XD.js.map → singleCellGeneExpression.unit.spec-6C7PDGRH.js.map} +0 -0
  903. /package/dist/{singleCellNumericValue-3VIUPYPB.js.map → singleCellNumericValue-QGYITZRC.js.map} +0 -0
  904. /package/dist/{singleCellNumericValue.unit.spec-VR5ICRQA.js.map → singleCellNumericValue.unit.spec-MQUKPEZJ.js.map} +0 -0
  905. /package/dist/{singleCellPlot-36QDY7VL.js.map → singleCellPlot-JJMFJ2KQ.js.map} +0 -0
  906. /package/dist/{singlecell-EXEOLJ3J.js.map → singlecell-J23S3JR2.js.map} +0 -0
  907. /package/dist/{singlecell-D2MZVFR4.js.map → singlecell-Y4OGUWEC.js.map} +0 -0
  908. /package/dist/{snp-XHEHXZMB.js.map → snp-IO6TKWGD.js.map} +0 -0
  909. /package/dist/{snp.unit.spec-YR6IDLL7.js.map → snp.unit.spec-X7ILEEPO.js.map} +0 -0
  910. /package/dist/{snplocus-BM7LUK2U.js.map → snplocus-Z2NGIKMO.js.map} +0 -0
  911. /package/dist/{snplst-22VSEZ7R.js.map → snplst-XCS2FCQV.js.map} +0 -0
  912. /package/dist/{spliceevent.a53ss.diagram-KERTJ3QA.js.map → spliceevent.a53ss.diagram-F3S4BRVG.js.map} +0 -0
  913. /package/dist/{spliceevent.exonskip.diagram-K74VIUA4.js.map → spliceevent.exonskip.diagram-AXCDJKH4.js.map} +0 -0
  914. /package/dist/{spliceevent.noeventdiagram-W7WGSVVL.js.map → spliceevent.noeventdiagram-UK3X667E.js.map} +0 -0
  915. /package/dist/{ssGSEA-XDEA5TVX.js.map → ssGSEA-ZRPNQKJ5.js.map} +0 -0
  916. /package/dist/{ssGSEA.unit.spec-RDCPXJ5S.js.map → ssGSEA.unit.spec-DG5ZHLC7.js.map} +0 -0
  917. /package/dist/{stattable-HZ3DOUEM.js.map → stattable-XYSC3CYU.js.map} +0 -0
  918. /package/dist/{summarizeCnvGeneexp-VB4SOJHT.js.map → summarizeCnvGeneexp-H2NP7VLU.js.map} +0 -0
  919. /package/dist/{summarizeGeneexpSurvival-5ZWIJ6O4.js.map → summarizeGeneexpSurvival-HTCD3VQQ.js.map} +0 -0
  920. /package/dist/{summarizeMutationCnv-MBPU64C5.js.map → summarizeMutationCnv-UEGXWK2P.js.map} +0 -0
  921. /package/dist/{summarizeMutationDiagnosis-QRP4ITNL.js.map → summarizeMutationDiagnosis-MJGWP7IT.js.map} +0 -0
  922. /package/dist/{summarizeMutationSurvival-SSXAY5W4.js.map → summarizeMutationSurvival-55JW5LA6.js.map} +0 -0
  923. /package/dist/{summary-SRESZS4Z.js.map → summary-HJO23RGB.js.map} +0 -0
  924. /package/dist/{summary.integration.spec-3V2CEPJM.js.map → summary.integration.spec-OWI2C2N5.js.map} +0 -0
  925. /package/dist/{summaryInput-3VD4KBCU.js.map → summaryInput-RL2JXRDE.js.map} +0 -0
  926. /package/dist/{sunburst-E5IEQQUV.js.map → sunburst-JFY6V5E2.js.map} +0 -0
  927. /package/dist/{survival-H4HYC6GC.js.map → survival-6FLR4YCJ.js.map} +0 -0
  928. /package/dist/{survival-K5WWAELO.js.map → survival-PBBU6PA5.js.map} +0 -0
  929. /package/dist/{survival.integration.spec-SPN2TSQW.js.map → survival.integration.spec-WAKTGYGP.js.map} +0 -0
  930. /package/dist/{svgraph-USRAYSBN.js.map → svgraph-WD3DUZV7.js.map} +0 -0
  931. /package/dist/{svmr-MOKLLJKJ.js.map → svmr-AP6ZFO7S.js.map} +0 -0
  932. /package/dist/{table-WD3P3WL2.js.map → table-GX3VJLPZ.js.map} +0 -0
  933. /package/dist/{termCollection-JU4OJRWD.js.map → termCollection-QE7U5QBD.js.map} +0 -0
  934. /package/dist/{termCollection-VWS5CKVH.js.map → termCollection-YQ332WKB.js.map} +0 -0
  935. /package/dist/{termCollection.unit.spec-TPUJWKKW.js.map → termCollection.unit.spec-ELLN7VRA.js.map} +0 -0
  936. /package/dist/{termCollectionFractionSelection-UWLHDPX2.js.map → termCollectionFractionSelection-V3RP5KAT.js.map} +0 -0
  937. /package/dist/{termCollectionFractionSelection.unit.spec-RBHJY34K.js.map → termCollectionFractionSelection.unit.spec-JR7Q7TJI.js.map} +0 -0
  938. /package/dist/{tk-OAOVCATS.js.map → tk-GD2KJM5W.js.map} +0 -0
  939. /package/dist/{tk-SMOGJUD7.js.map → tk-J5VPFEX6.js.map} +0 -0
  940. /package/dist/{tp.ui-EMWJCGRX.js.map → tp.ui-5K3AAXDW.js.map} +0 -0
  941. /package/dist/{tvs.categorical-A7J4RIKL.js.map → tvs.categorical-RPACB4VU.js.map} +0 -0
  942. /package/dist/{tvs.condition-HFLZES5E.js.map → tvs.condition-O6JBUM6D.js.map} +0 -0
  943. /package/dist/{tvs.dt-GBYX2RWX.js.map → tvs.dt-5EVBSRX3.js.map} +0 -0
  944. /package/dist/{tvs.dtcnv.categorical-X2K3MIPG.js.map → tvs.dtcnv.categorical-Y5YHBZNC.js.map} +0 -0
  945. /package/dist/{tvs.dtcnv.continuous-5EMX4PBP.js.map → tvs.dtcnv.continuous-WP322QUP.js.map} +0 -0
  946. /package/dist/{tvs.dtfusion-7VVSPNRK.js.map → tvs.dtfusion-CCMUFDMQ.js.map} +0 -0
  947. /package/dist/{tvs.dtitd-2YGFPXOY.js.map → tvs.dtitd-P3ED3MWA.js.map} +0 -0
  948. /package/dist/{tvs.dtsnvindel-EISO52O6.js.map → tvs.dtsnvindel-X2MXPLC6.js.map} +0 -0
  949. /package/dist/{tvs.dtsv-RTAMAW3G.js.map → tvs.dtsv-4FOWFNVV.js.map} +0 -0
  950. /package/dist/{tvs.multivalue-5N6PSG4L.js.map → tvs.multivalue-IRF467ZK.js.map} +0 -0
  951. /package/dist/{tvs.numeric-R5UT7ARM.js.map → tvs.numeric-C7FDCGCS.js.map} +0 -0
  952. /package/dist/{tvs.samplelst-SZDNNFK5.js.map → tvs.samplelst-CBU6ATI5.js.map} +0 -0
  953. /package/dist/{tvs.survival-EUUDDXP7.js.map → tvs.survival-3K5ASAXV.js.map} +0 -0
  954. /package/dist/{tvs.termCollection-DAHEYZK2.js.map → tvs.termCollection-MXEWO6KJ.js.map} +0 -0
  955. /package/dist/{vocabulary-P4XRHR34.js.map → vocabulary-GQBHDP3K.js.map} +0 -0
  956. /package/dist/{wsi.direct-J7VX5EMI.js.map → wsi.direct-25JUHWEF.js.map} +0 -0
@@ -0,0 +1,583 @@
1
+ import {
2
+ axisstyle,
3
+ bulk_badline,
4
+ disappear2 as disappear,
5
+ make_table_2col,
6
+ newpane,
7
+ newpane3,
8
+ renderSandboxFormDiv,
9
+ to_svg
10
+ } from "./chunk-NNDKYTUV.js";
11
+ import "./chunk-HJ6L54YS.js";
12
+ import "./chunk-HWNQOADC.js";
13
+ import {
14
+ Menu
15
+ } from "./chunk-CNFTQSNE.js";
16
+ import "./chunk-PLFPXOGX.js";
17
+ import "./chunk-EEB5VE2A.js";
18
+ import "./chunk-3CIL7KH7.js";
19
+ import "./chunk-T4XPCSLP.js";
20
+ import "./chunk-BIJOXCLN.js";
21
+ import "./chunk-W5J3LTYS.js";
22
+ import "./chunk-L2WOLNZK.js";
23
+ import "./chunk-AMW5LCUB.js";
24
+ import {
25
+ axisBottom,
26
+ axisLeft,
27
+ category10_default
28
+ } from "./chunk-ZPWBYHNE.js";
29
+ import "./chunk-HBNB5TRH.js";
30
+ import "./chunk-PF4DSFDR.js";
31
+ import {
32
+ format,
33
+ linear,
34
+ log,
35
+ ordinal,
36
+ time,
37
+ timeParse
38
+ } from "./chunk-4OLM3KSB.js";
39
+ import "./chunk-6XKAOSQE.js";
40
+ import "./chunk-TLT4YIG3.js";
41
+ import "./chunk-5R63Q5KH.js";
42
+ import {
43
+ select_default
44
+ } from "./chunk-I6Y4O3RR.js";
45
+ import "./chunk-Q5RDQNIT.js";
46
+ import "./chunk-HS5PO5ZQ.js";
47
+
48
+ // src/maftimeline.js
49
+ var zerovalue = 1e-5;
50
+ var showcircle = true;
51
+ var maflogscale = true;
52
+ var tip = new Menu();
53
+ function maftimelineui(genomes, holder, sandbox_header) {
54
+ let pane, inputdiv, gselect, filediv, saydiv, visualdiv;
55
+ if (holder !== void 0) [inputdiv, gselect, filediv, saydiv, visualdiv] = renderSandboxFormDiv(holder, genomes);
56
+ else {
57
+ ;
58
+ [pane, inputdiv, gselect, filediv, saydiv, visualdiv] = newpane3(100, 100, genomes);
59
+ pane.header.text("MAF timeline plot");
60
+ }
61
+ inputdiv.append("p").html(
62
+ "<a href=https://docs.google.com/document/d/1WXlCVHLq_P2jGiRGJ55uzXCC6p-6Jqn7h406RUID_xo/edit?usp=sharing target=_blank>File format</a>"
63
+ );
64
+ inputdiv.append("p").html("<a href=https://www.dropbox.com/s/940wfo6rd1ttlim/example.maftimeline?dl=0 target=_blank>Example file</a>");
65
+ {
66
+ const id = Math.random().toString();
67
+ const p = inputdiv.append("p");
68
+ p.append("input").attr("type", "checkbox").attr("id", id).property("checked", true).style("margin-right", "5px").on("change", () => {
69
+ maflogscale = !maflogscale;
70
+ });
71
+ p.append("label").attr("for", id).text("Y axis (MAF) log10 scale");
72
+ }
73
+ const fileui = () => {
74
+ filediv.selectAll("*").remove();
75
+ const butt = filediv.append("input").attr("type", "file").on("change", (event) => {
76
+ saydiv.text("");
77
+ const file = event.target.files[0];
78
+ if (!file) {
79
+ fileui();
80
+ return;
81
+ }
82
+ if (file.size == 0) {
83
+ saydiv.text("Wrong file: " + file.name);
84
+ fileui();
85
+ return;
86
+ }
87
+ const reader = new FileReader();
88
+ reader.onload = (event2) => {
89
+ const lines = event2.target.result.trim().split(/\r?\n/);
90
+ const [err, header] = parseheader(lines[0].trim());
91
+ if (err) {
92
+ saydiv.text("File header error: " + err);
93
+ fileui();
94
+ return;
95
+ }
96
+ const badlines = [];
97
+ const data = {};
98
+ let good = 0;
99
+ for (let i = 1; i < lines.length; i++) {
100
+ if (lines[i] == "") continue;
101
+ if (lines[i][0] == "#") continue;
102
+ const m = parseline(i, lines[i], header, badlines, data);
103
+ if (m) {
104
+ good++;
105
+ }
106
+ }
107
+ if (badlines.length) {
108
+ bulk_badline(header, badlines);
109
+ }
110
+ if (good == 0) {
111
+ fileui();
112
+ return;
113
+ }
114
+ let visual_holder;
115
+ if (pane) {
116
+ disappear(pane.pane);
117
+ const pane2 = newpane({ x: 100, y: 100, toshrink: true });
118
+ pane2.header.html('<span style="opacity:.5;font-size:.7em">MAF TIMELINE</span> ' + file.name);
119
+ visual_holder = pane2.body;
120
+ }
121
+ if (holder !== void 0) {
122
+ visual_holder = visualdiv.html('<span style="opacity:.5;font-size:.7em">MAF TIMELINE</span> ' + file.name);
123
+ inputdiv.selectAll("*").remove();
124
+ saydiv.text("");
125
+ }
126
+ render(data, header, visual_holder);
127
+ };
128
+ reader.onerror = function() {
129
+ saydiv.text("Error reading file " + file.name);
130
+ fileui();
131
+ return;
132
+ };
133
+ saydiv.text("Parsing file " + file.name + " ...");
134
+ reader.readAsText(file, "utf8");
135
+ });
136
+ setTimeout(() => butt.node().focus(), 1100);
137
+ };
138
+ fileui();
139
+ }
140
+ function parseheader(line) {
141
+ const header = line.toLowerCase().split(" ");
142
+ if (header.length <= 1) return ["columns must be separated by tab"];
143
+ const htry = (...lst) => {
144
+ for (const i2 of lst) {
145
+ const j = header.indexOf(i2);
146
+ if (j != -1) return j;
147
+ }
148
+ return -1;
149
+ };
150
+ let i = htry("person", "patient", "caseid");
151
+ if (i == -1) return ["person missing"];
152
+ header[i] = "patient";
153
+ i = htry("sample", "sampleid");
154
+ if (i == -1) return ["sample missing"];
155
+ header[i] = "sample";
156
+ i = htry("snv4");
157
+ if (i == -1) return ["snv4 missing"];
158
+ header[i] = "snv4";
159
+ i = htry("date", "dateofsample");
160
+ if (i == -1) return ["date missing"];
161
+ header[i] = "date";
162
+ i = htry("mutant_readcount", "mutantcount");
163
+ if (i != -1) header[i] = "mutant_readcount";
164
+ i = htry("ref_readcount", "refcount");
165
+ if (i != -1) header[i] = "ref_readcount";
166
+ i = htry("total_readcount", "coveragecount");
167
+ if (i == -1) return ["total_readcount missing"];
168
+ header[i] = "coverage";
169
+ i = htry("maf");
170
+ if (i == -1) return ["maf missing"];
171
+ header[i] = "maf";
172
+ i = htry("call_manual");
173
+ if (i != -1) header[i] = "call_manual";
174
+ return [null, header];
175
+ }
176
+ function parseline(i, line, header, badlines, data) {
177
+ const lst = line.split(" ");
178
+ const m = {};
179
+ for (let j = 0; j < header.length; j++) {
180
+ m[header[j]] = lst[j];
181
+ }
182
+ if (!m.patient) {
183
+ badlines.push([i, "missing patient", lst]);
184
+ return;
185
+ }
186
+ if (!data[m.patient]) {
187
+ data[m.patient] = {
188
+ snv4: {},
189
+ show: false
190
+ };
191
+ }
192
+ if (!m.snv4) {
193
+ badlines.push([i, "missing snv4", lst]);
194
+ return;
195
+ }
196
+ if (!data[m.patient].snv4[m.snv4]) {
197
+ data[m.patient].snv4[m.snv4] = {
198
+ mutationname: m.snv4,
199
+ samples: [],
200
+ subidx: void 0
201
+ };
202
+ }
203
+ if (m.gene) {
204
+ data[m.patient].snv4[m.snv4].gene = m.gene;
205
+ }
206
+ if (!m.maf) {
207
+ badlines.push([i, "missing maf", lst]);
208
+ return;
209
+ }
210
+ let v = Number.parseFloat(m.maf);
211
+ if (Number.isNaN(v)) {
212
+ badlines.push([i, "invalid maf", lst]);
213
+ return;
214
+ }
215
+ if (v < zerovalue) {
216
+ v = zerovalue;
217
+ }
218
+ m.maf = v;
219
+ if (!m.coverage) {
220
+ badlines.push([i, "missing total_readcount", lst]);
221
+ return;
222
+ }
223
+ if (m.call_manual && m.call_manual == "wildtype") {
224
+ m.maf = zerovalue;
225
+ }
226
+ v = Number.parseInt(m.coverage);
227
+ if (Number.isNaN(v)) {
228
+ badlines.push([i, "invalid total_readcount", lst]);
229
+ return;
230
+ }
231
+ m.coverage = v;
232
+ let date;
233
+ if (m.date) {
234
+ const f = timeParse("%m/%d/%Y");
235
+ date = f(m.date);
236
+ m.Date = m.date;
237
+ } else {
238
+ badlines.push([i, "missing date", lst]);
239
+ return;
240
+ }
241
+ if (date == null) {
242
+ badlines.push([i, "cannot parse date", lst]);
243
+ return;
244
+ }
245
+ m.date = date;
246
+ if (!m.sample) {
247
+ badlines.push([i, "missing sample", lst]);
248
+ return;
249
+ }
250
+ data[m.patient].snv4[m.snv4].samples.push(m);
251
+ return true;
252
+ }
253
+ function render(data, header, holder) {
254
+ const table = holder.append("table").style("margin", "20px");
255
+ const tr1 = table.append("tr");
256
+ let td = tr1.append("td").style("vertical-align", "top").attr("rowspan", 2);
257
+ td.append("button").text("Toggle circle visibility").on("click", () => {
258
+ showcircle = !showcircle;
259
+ for (const n in data) {
260
+ if (data[n].show) {
261
+ data[n].handle.node().click();
262
+ break;
263
+ }
264
+ }
265
+ });
266
+ const patientholder = td.append("div").style("margin-top", "10px");
267
+ const td1 = tr1.append("td").style("vertical-align", "top");
268
+ const graphholder = td1.append("div").style("display", "inline-block");
269
+ const controlholder = td1.append("div").style("display", "inline-block").style("vertical-align", "top");
270
+ const tr2 = table.append("tr");
271
+ const tiantable = tr2.append("td").append("table").style("border-spacing", "20px").style("border-collapse", "separate");
272
+ const gtr1 = tiantable.append("tr");
273
+ td = gtr1.append("td").style("vertical-align", "top");
274
+ td.append("div").text("Shared").style("font-size", "2em");
275
+ const graph1holder = td.append("div").style("border", "solid 1px black");
276
+ td = gtr1.append("td").style("vertical-align", "top");
277
+ td.append("div").text("Rising").style("font-size", "2em");
278
+ const graph2holder = td.append("div").style("border", "solid 1px black");
279
+ const gtr2 = tiantable.append("tr");
280
+ td = gtr2.append("td").style("vertical-align", "top");
281
+ td.append("div").text("Falling").style("font-size", "2em");
282
+ const graph3holder = td.append("div").style("border", "solid 1px black");
283
+ td = gtr2.append("td").style("vertical-align", "top");
284
+ td.append("div").text("R-only").style("font-size", "2em");
285
+ const graph4holder = td.append("div").style("border", "solid 1px black");
286
+ for (const patient in data) {
287
+ const snvlst = [];
288
+ const colors = ordinal(category10_default);
289
+ for (const x in data[patient].snv4) {
290
+ const snv = data[patient].snv4[x];
291
+ snv.show = true;
292
+ snv.color = colors(snv.mutationname);
293
+ snv.samples.sort((a, b) => a.date - b.date);
294
+ for (const s of snv.samples) {
295
+ s.color = snv.color;
296
+ }
297
+ snvlst.push(snv);
298
+ }
299
+ const div = patientholder.append("div").classed("sja_menuoption", true).style("color", "black").text(patient).on("click", () => {
300
+ for (const pn in data) {
301
+ data[pn].handle.style("color", "black");
302
+ data[pn].show = false;
303
+ }
304
+ data[patient].handle.style("color", "red");
305
+ data[patient].show = true;
306
+ makegraph(snvlst, header, graphholder);
307
+ makesubgraph(snvlst, graph1holder, graph2holder, graph3holder, graph4holder);
308
+ makecontrol(snvlst, header, controlholder, graphholder, graph1holder, graph2holder, graph3holder, graph4holder);
309
+ });
310
+ data[patient].handle = div;
311
+ }
312
+ for (const n in data) {
313
+ data[n].handle.node().click();
314
+ break;
315
+ }
316
+ }
317
+ function makesubgraph(snvlst, g1, g2, g3, g4) {
318
+ g1.selectAll("*").remove();
319
+ g2.selectAll("*").remove();
320
+ g3.selectAll("*").remove();
321
+ g4.selectAll("*").remove();
322
+ const l1 = [];
323
+ const l2 = [];
324
+ const l3 = [];
325
+ const l4 = [];
326
+ for (const snv of snvlst) {
327
+ switch (snv.subidx) {
328
+ case 1:
329
+ l1.push(snv);
330
+ break;
331
+ case 2:
332
+ l2.push(snv);
333
+ break;
334
+ case 3:
335
+ l3.push(snv);
336
+ break;
337
+ case 4:
338
+ l4.push(snv);
339
+ break;
340
+ }
341
+ }
342
+ if (l1.length) {
343
+ makegraph(l1, null, g1, true);
344
+ } else {
345
+ g1.append("div").style("padding", "60px").style("background-color", "#ededed").text("no data");
346
+ }
347
+ if (l2.length) {
348
+ makegraph(l2, null, g2, true);
349
+ } else {
350
+ g2.append("div").style("padding", "60px").style("background-color", "#ededed").text("no data");
351
+ }
352
+ if (l3.length) {
353
+ makegraph(l3, null, g3, true);
354
+ } else {
355
+ g3.append("div").style("padding", "60px").style("background-color", "#ededed").text("no data");
356
+ }
357
+ if (l4.length) {
358
+ makegraph(l4, null, g4, true);
359
+ } else {
360
+ g4.append("div").style("padding", "60px").style("background-color", "#ededed").text("no data");
361
+ }
362
+ }
363
+ function makegraph(snvlst0, header, holder, issub) {
364
+ holder.selectAll("*").remove();
365
+ const samples = [];
366
+ const snvlst = [];
367
+ for (const snv of snvlst0) {
368
+ if (!issub && !snv.show) continue;
369
+ snvlst.push(snv);
370
+ for (const s of snv.samples) {
371
+ samples.push(s);
372
+ }
373
+ }
374
+ if (snvlst.length == 0) return;
375
+ let mindate = snvlst[0].samples[0].date;
376
+ let maxdate = snvlst[0].samples[0].date;
377
+ let maxmaf = snvlst[0].samples[0].maf;
378
+ let maxcoverage = snvlst[0].samples[0].coverage;
379
+ for (const snv of snvlst) {
380
+ for (const s of snv.samples) {
381
+ mindate = Math.min(mindate, s.date);
382
+ maxdate = Math.max(maxdate, s.date);
383
+ maxmaf = Math.max(maxmaf, s.maf);
384
+ maxcoverage = Math.max(maxcoverage, s.coverage);
385
+ }
386
+ }
387
+ const svg = holder.append("svg");
388
+ const toppad = 30, rightpad = 200, yaxisw = 100, xaxish = 50;
389
+ let width = 600;
390
+ let height = 400;
391
+ let xpad, ypad, minradius;
392
+ const xaxisg = svg.append("g");
393
+ const yaxisg = svg.append("g");
394
+ const drag = svg.append("text").text("drag to resize").attr("class", "sja_clb").attr("text-anchor", "end").on("mousedown", (event) => {
395
+ event.preventDefault();
396
+ const x = event.clientX;
397
+ const y = event.clientY;
398
+ const w0 = width;
399
+ const h0 = height;
400
+ const body = select_default(document.body);
401
+ body.on("mousemove", (event2) => {
402
+ setsize(w0 + event2.clientX - x, h0 + event2.clientY - y);
403
+ }).on("mouseup", () => {
404
+ body.on("mousemove", null).on("mouseup", null);
405
+ });
406
+ });
407
+ const xscale = time().domain([mindate, maxdate]);
408
+ const yscale = (maflogscale ? log() : linear()).domain([zerovalue, 1]);
409
+ const rscale = linear().domain([1, maxcoverage]);
410
+ const g = svg.append("g");
411
+ const lines = g.selectAll().data(snvlst).enter().append("path").attr("stroke", (d) => d.color).attr("fill", "none");
412
+ let circles;
413
+ if (showcircle) {
414
+ circles = g.selectAll().data(samples).enter().append("circle").attr("fill", (d) => d.color).attr("fill-opacity", 0.1).on("mouseover", (event, d) => {
415
+ event.target.setAttribute("fill-opacity", 0.4);
416
+ tip.clear();
417
+ tip.show(event.clientX, event.clientY);
418
+ const lst = [];
419
+ for (const k in d) {
420
+ if (k == "color") continue;
421
+ if (k == "gene") {
422
+ lst.push({ k: "gene", v: '<span style="color:' + d.color + '">' + d.gene + "</span>" });
423
+ continue;
424
+ }
425
+ if (k == "date") continue;
426
+ if (k == "url") {
427
+ lst.push({ k: "URL", v: "<a href=" + d.url + " target=_blank>LINK</a>" });
428
+ continue;
429
+ }
430
+ lst.push({ k, v: d[k] });
431
+ }
432
+ make_table_2col(tip.d, lst);
433
+ }).on("mouseout", (event) => {
434
+ event.target.setAttribute("fill-opacity", 0.1);
435
+ });
436
+ }
437
+ const legend = svg.append("g");
438
+ const setsize = (w, h) => {
439
+ width = w;
440
+ height = h;
441
+ minradius = 2;
442
+ const maxradius = Math.max(width, height) / 30;
443
+ xpad = maxradius;
444
+ ypad = maxradius;
445
+ rscale.range([Math.pow(minradius, 2), Math.pow(maxradius, 2)]);
446
+ xscale.range([0, width]);
447
+ yscale.range([height, 0]);
448
+ svg.attr("width", yaxisw + xpad + width + rightpad).attr("height", toppad + height + ypad + xaxish);
449
+ xaxisg.attr("transform", "translate(" + (yaxisw + xpad) + "," + (toppad + height + ypad) + ")");
450
+ yaxisg.attr("transform", "translate(" + yaxisw + "," + toppad + ")");
451
+ drag.attr("x", yaxisw + xpad + width).attr("y", toppad + height + ypad + xaxish - 4);
452
+ axisstyle({
453
+ axis: xaxisg.call(axisBottom().scale(xscale)),
454
+ showline: true,
455
+ color: "black",
456
+ fontsize: Math.max(12, Math.min(20, width / 100))
457
+ });
458
+ axisstyle({
459
+ axis: yaxisg.call(
460
+ axisLeft().scale(yscale).tickValues([1, 0.1, 0.01, 1e-3, 1e-4, zerovalue]).tickFormat(format(" "))
461
+ ),
462
+ showline: true,
463
+ color: "black",
464
+ fontsize: Math.max(12, Math.min(20, height / 100))
465
+ });
466
+ g.attr("transform", "translate(" + (yaxisw + xpad) + "," + toppad + ")");
467
+ lines.attr("d", (d) => {
468
+ const lst = [];
469
+ for (let i = 0; i < d.samples.length; i++) {
470
+ const s = d.samples[i];
471
+ lst.push((i == 0 ? "M" : "L") + " " + xscale(s.date) + " " + yscale(s.maf));
472
+ }
473
+ return lst.join(" ");
474
+ });
475
+ if (showcircle) {
476
+ circles.attr("cx", (d) => xscale(d.date)).attr("cy", (d) => yscale(d.maf)).attr("r", (d) => Math.sqrt(rscale(d.coverage)));
477
+ }
478
+ legend.attr("transform", "translate(" + (yaxisw + xpad + width + maxradius + 5) + "," + toppad + ")");
479
+ legend.selectAll("*").remove();
480
+ let y = minradius;
481
+ if (showcircle) {
482
+ legend.append("circle").attr("r", minradius).attr("cx", minradius).attr("cy", y).attr("fill", "#ccc");
483
+ legend.append("text").text(1).attr("x", minradius * 2 + 10).attr("y", y).attr("font-size", 10).attr("dominant-baseline", "central");
484
+ y += 5 + minradius + maxradius;
485
+ legend.append("circle").attr("r", maxradius).attr("cx", maxradius).attr("cy", y).attr("fill", "#ccc");
486
+ legend.append("text").text(maxcoverage).attr("x", maxradius * 2 + 10).attr("y", y).attr("font-size", 15).attr("dominant-baseline", "central");
487
+ y += 15 + maxradius;
488
+ }
489
+ const fontsize = 12;
490
+ for (const snv of snvlst) {
491
+ legend.append("line").attr("x2", 30).attr("y1", y).attr("y2", y).attr("stroke", snv.color);
492
+ if (showcircle) {
493
+ legend.append("circle").attr("cx", 15).attr("cy", y).attr("r", 8).attr("fill", snv.color).attr("fill-opacity", 0.1);
494
+ }
495
+ legend.append("text").text(snv.gene).attr("dominant-baseline", "central").attr("font-size", fontsize).attr("x", 30 + 10).attr("y", y).attr("fill", snv.color).style("cursor", "default").on("mouseover", (event) => {
496
+ event.target.setAttribute("font-weight", "bold");
497
+ lines.filter((d) => d.mutationname == snv.mutationname).attr("stroke-width", 3);
498
+ }).on("mouseout", (event) => {
499
+ event.target.setAttribute("font-weight", "normal");
500
+ lines.filter((d) => d.mutationname == snv.mutationname).attr("stroke-width", 1);
501
+ });
502
+ y += fontsize + 10;
503
+ }
504
+ };
505
+ setsize(width, height);
506
+ holder.append("div").style("text-align", "right").append("button").text("SVG").on("click", () => {
507
+ to_svg(svg.node(), "maf-timeline");
508
+ });
509
+ }
510
+ function makecontrol(snvlst, header, holder, graphholder, g1, g2, g3, g4) {
511
+ holder.selectAll("*").remove();
512
+ const table = holder.append("table");
513
+ for (const snv of snvlst) {
514
+ const tr = table.append("tr");
515
+ const td1 = tr.append("td");
516
+ td1.text(snv.gene).style("color", snv.color);
517
+ const td2 = tr.append("td");
518
+ const checkbox = td2.append("input").attr("type", "checkbox").style("zoom", "150%").property("checked", snv.show);
519
+ snv.checkbox = checkbox;
520
+ checkbox.on("change", (event) => {
521
+ snv.show = event.target.checked;
522
+ makegraph(snvlst, header, graphholder);
523
+ });
524
+ const butt = td2.append("button").style("margin-left", "5px").text("Only").on("click", () => {
525
+ for (const s2 of snvlst) {
526
+ s2.show = false;
527
+ s2.checkbox.property("checked", false);
528
+ }
529
+ snv.show = true;
530
+ snv.checkbox.property("checked", true);
531
+ makegraph(snvlst, header, graphholder);
532
+ });
533
+ let cname = Math.random();
534
+ const td11 = tr.append("td");
535
+ const c1 = td11.append("input").attr("type", "checkbox").attr("id", cname).on("change", (event) => cchange(1, event.target));
536
+ td11.append("label").html("&nbsp;shared").attr("for", cname);
537
+ cname = Math.random();
538
+ const td22 = tr.append("td");
539
+ const c2 = td22.append("input").attr("type", "checkbox").attr("id", cname).on("change", (event) => cchange(2, event.target));
540
+ td22.append("label").html("&nbsp;rising").attr("for", cname);
541
+ cname = Math.random();
542
+ const td33 = tr.append("td");
543
+ const c3 = td33.append("input").attr("type", "checkbox").attr("id", cname).on("change", (event) => cchange(3, event.target));
544
+ td33.append("label").html("&nbsp;falling").attr("for", cname);
545
+ cname = Math.random();
546
+ const td44 = tr.append("td");
547
+ const c4 = td44.append("input").attr("type", "checkbox").attr("id", cname).on("change", (event) => cchange(4, event.target));
548
+ td44.append("label").html("&nbsp;R-only").attr("for", cname);
549
+ if (snv.subidx == 1) c1.property("checked", true);
550
+ if (snv.subidx == 2) c2.property("checked", true);
551
+ if (snv.subidx == 3) c3.property("checked", true);
552
+ if (snv.subidx == 4) c4.property("checked", true);
553
+ const cchange = (which, check) => {
554
+ if (!check.checked) {
555
+ snv.subidx = -1;
556
+ } else {
557
+ snv.subidx = which;
558
+ if (which == 1) {
559
+ c2.property("checked", false);
560
+ c3.property("checked", false);
561
+ c4.property("checked", false);
562
+ } else if (which == 2) {
563
+ c1.property("checked", false);
564
+ c3.property("checked", false);
565
+ c4.property("checked", false);
566
+ } else if (which == 3) {
567
+ c1.property("checked", false);
568
+ c2.property("checked", false);
569
+ c4.property("checked", false);
570
+ } else {
571
+ c1.property("checked", false);
572
+ c2.property("checked", false);
573
+ c3.property("checked", false);
574
+ }
575
+ }
576
+ makesubgraph(snvlst, g1, g2, g3, g4);
577
+ };
578
+ }
579
+ }
580
+ export {
581
+ maftimelineui as default
582
+ };
583
+ //# sourceMappingURL=maftimeline-NABCAMHG.js.map
@@ -0,0 +1,55 @@
1
+ import {
2
+ Matrix,
3
+ componentInit,
4
+ makeChartBtnMenu,
5
+ matrixInit
6
+ } from "./chunk-E7XHA4YL.js";
7
+ import "./chunk-DFZWE3TR.js";
8
+ import "./chunk-7X347XMF.js";
9
+ import "./chunk-VV6JIG4D.js";
10
+ import "./chunk-NHMIMTJA.js";
11
+ import {
12
+ getPlotConfig,
13
+ setComputedConfig
14
+ } from "./chunk-NYO7YANQ.js";
15
+ import "./chunk-LSQ5AQ6Q.js";
16
+ import "./chunk-N7NW37FP.js";
17
+ import "./chunk-6Q5SOSSU.js";
18
+ import "./chunk-F2EEQ7KG.js";
19
+ import "./chunk-C2MCQZWH.js";
20
+ import "./chunk-DDKS3MV3.js";
21
+ import "./chunk-SFUDTUXF.js";
22
+ import "./chunk-VPMQDTYR.js";
23
+ import "./chunk-RZ2THVK4.js";
24
+ import "./chunk-V2OJLJSK.js";
25
+ import "./chunk-NNDKYTUV.js";
26
+ import "./chunk-HJ6L54YS.js";
27
+ import "./chunk-HWNQOADC.js";
28
+ import "./chunk-CNFTQSNE.js";
29
+ import "./chunk-PLFPXOGX.js";
30
+ import "./chunk-EEB5VE2A.js";
31
+ import "./chunk-3CIL7KH7.js";
32
+ import "./chunk-T4XPCSLP.js";
33
+ import "./chunk-BIJOXCLN.js";
34
+ import "./chunk-W5J3LTYS.js";
35
+ import "./chunk-L2WOLNZK.js";
36
+ import "./chunk-AMW5LCUB.js";
37
+ import "./chunk-ZPWBYHNE.js";
38
+ import "./chunk-HBNB5TRH.js";
39
+ import "./chunk-PF4DSFDR.js";
40
+ import "./chunk-4OLM3KSB.js";
41
+ import "./chunk-6XKAOSQE.js";
42
+ import "./chunk-TLT4YIG3.js";
43
+ import "./chunk-5R63Q5KH.js";
44
+ import "./chunk-I6Y4O3RR.js";
45
+ import "./chunk-Q5RDQNIT.js";
46
+ import "./chunk-HS5PO5ZQ.js";
47
+ export {
48
+ Matrix,
49
+ componentInit,
50
+ getPlotConfig,
51
+ makeChartBtnMenu,
52
+ matrixInit,
53
+ setComputedConfig
54
+ };
55
+ //# sourceMappingURL=matrix-JC6AJT2N.js.map
@@ -0,0 +1,50 @@
1
+ import {
2
+ Matrix,
3
+ componentInit,
4
+ makeChartBtnMenu,
5
+ matrixInit
6
+ } from "./chunk-E7XHA4YL.js";
7
+ import "./chunk-DFZWE3TR.js";
8
+ import "./chunk-7X347XMF.js";
9
+ import "./chunk-VV6JIG4D.js";
10
+ import "./chunk-NHMIMTJA.js";
11
+ import "./chunk-NYO7YANQ.js";
12
+ import "./chunk-LSQ5AQ6Q.js";
13
+ import "./chunk-N7NW37FP.js";
14
+ import "./chunk-6Q5SOSSU.js";
15
+ import "./chunk-F2EEQ7KG.js";
16
+ import "./chunk-C2MCQZWH.js";
17
+ import "./chunk-DDKS3MV3.js";
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+ import "./chunk-SFUDTUXF.js";
19
+ import "./chunk-VPMQDTYR.js";
20
+ import "./chunk-RZ2THVK4.js";
21
+ import "./chunk-V2OJLJSK.js";
22
+ import "./chunk-NNDKYTUV.js";
23
+ import "./chunk-HJ6L54YS.js";
24
+ import "./chunk-HWNQOADC.js";
25
+ import "./chunk-CNFTQSNE.js";
26
+ import "./chunk-PLFPXOGX.js";
27
+ import "./chunk-EEB5VE2A.js";
28
+ import "./chunk-3CIL7KH7.js";
29
+ import "./chunk-T4XPCSLP.js";
30
+ import "./chunk-BIJOXCLN.js";
31
+ import "./chunk-W5J3LTYS.js";
32
+ import "./chunk-L2WOLNZK.js";
33
+ import "./chunk-AMW5LCUB.js";
34
+ import "./chunk-ZPWBYHNE.js";
35
+ import "./chunk-HBNB5TRH.js";
36
+ import "./chunk-PF4DSFDR.js";
37
+ import "./chunk-4OLM3KSB.js";
38
+ import "./chunk-6XKAOSQE.js";
39
+ import "./chunk-TLT4YIG3.js";
40
+ import "./chunk-5R63Q5KH.js";
41
+ import "./chunk-I6Y4O3RR.js";
42
+ import "./chunk-Q5RDQNIT.js";
43
+ import "./chunk-HS5PO5ZQ.js";
44
+ export {
45
+ Matrix,
46
+ componentInit,
47
+ makeChartBtnMenu,
48
+ matrixInit
49
+ };
50
+ //# sourceMappingURL=matrix-UCHESWVK.js.map