@sjcrh/proteinpaint-client 2.213.0 → 2.214.0

package/dist/chunk-COWQ5L4E.js

@@ -0,0 +1,243 @@
+import {
+  keyupEnter
+} from "./chunk-DGZWMUOG.js";
+import {
+  get_bin_label,
+  get_bin_range_equation
+} from "./chunk-7JP6JKKT.js";
+import {
+  toStoredUnit,
+  toUserUnit
+} from "./chunk-W5J3LTYS.js";
+
+// termsetting/handlers/NumCustomBinEditor.ts
+var NumCustomBinEditor = class {
+  constructor(editHandler) {
+    this.dom = {};
+    this.editHandler = editHandler;
+    this.opts = editHandler.opts;
+    this.tw = editHandler.tw;
+    this.termsetting = editHandler.termsetting;
+  }
+  /* bin boundaries are stored in the term's own unit but entered and shown in its user-facing one.
+  both are identity functions unless the term declares valueConversion{} */
+  toDisplay(v) {
+    return toUserUnit(v, this.tw.term);
+  }
+  toStored(v) {
+    return toStoredUnit(v, this.tw.term);
+  }
+  async render(div) {
+    this.tw = this.editHandler.tw;
+    const isRemounting = !!this.dom.inputsDiv && this.editHandler.dom.binsDiv?.node().contains(this.dom.inputsDiv.node());
+    if (!isRemounting) this.q = this.getDefaultQ();
+    await this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+    if (isRemounting) return;
+    if (this.dom.inputsDiv) {
+      this.dom.inputsDiv.remove();
+      delete this.dom.inputsDiv;
+    }
+    this.dom.inputsDiv = div.append("div").style("display", "flex").style("width", "100%");
+    this.renderCustomBinInputs();
+  }
+  getBoundaryOpts() {
+    return {
+      values: this.q.lst.slice(1).map((bin) => ({ x: this.toDisplay(bin.startunbounded ? bin.stop : bin.start), isDraggable: true })),
+      // the dragged value arrives in display units, matching what the textarea holds
+      callback: (d, value) => {
+        const boundaryValues = this.q.lst.slice(1).map((d2) => "start" in d2 ? this.toDisplay(d2.start) : "");
+        boundaryValues[d.index] = value;
+        this.dom.customBinBoundaryInput.property("value", boundaryValues.join("\n"));
+        this.handleInputChange("drag");
+        return 0;
+      }
+    };
+  }
+  getDefaultQ() {
+    if (this.tw.q.mode == "discrete" && this.tw.q.type == "custom-bin") {
+      const copy = JSON.parse(JSON.stringify(this.tw.q));
+      copy.lst.forEach((bin) => {
+        if (!bin.label) bin.label = get_bin_label(bin, this.tw.q, this.tw.term.valueConversion);
+        bin.range = get_bin_range_equation(bin, this.tw.q, this.tw.term.valueConversion);
+      });
+      return copy;
+    }
+    const { min, max } = this.editHandler.handler.density_data;
+    const defaultCustomBoundary = (
+      /* when no sample is annotated by this term,
+      minvalue and maxvalue are both null
+      setting defaultCustomBoundary to arbitrary "0" will allow existing UI to work
+      but remains to be evaluated if is really okay to use 0
+      */
+      !Number.isFinite(min) || !Number.isFinite(max) ? 0 : (
+        // minvalue and maxvalue is valid number
+        max != min ? min + (max - min) / 2 : max
+      )
+    );
+    const firstBin = {
+      startunbounded: true,
+      startinclusive: false,
+      stopinclusive: false,
+      stop: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
+    };
+    const lastBin = {
+      stopunbounded: true,
+      startinclusive: true,
+      stopinclusive: false,
+      start: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
+    };
+    return {
+      mode: "discrete",
+      type: "custom-bin",
+      lst: [
+        // Type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' is not assignable to type 'StartUnboundedBin | FullyBoundedBin'.
+        // Property 'start' is missing in type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' but required in type 'FullyBoundedBin'.
+        {
+          ...firstBin,
+          label: get_bin_label(firstBin, this.tw.q, this.tw.term.valueConversion),
+          range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
+        },
+        {
+          ...lastBin,
+          label: get_bin_label(lastBin, this.tw.q, this.tw.term.valueConversion),
+          range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
+        }
+        //satisfies StopUnboundedBin
+      ]
+    };
+  }
+  /******************* Functions for Numerical Custom size bins *******************/
+  renderCustomBinInputs() {
+    const q = this.q;
+    const boundaryDiv = this.dom.inputsDiv.append("div").style("margin-right", "20px");
+    this.dom.rangeAndLabelDiv = this.dom.inputsDiv.append("div");
+    boundaryDiv.append("div").style("margin-bottom", "5px").style("color", "rgb(136, 136, 136)").text("Bin boundaries");
+    this.dom.customBinBoundaryInput = boundaryDiv.append("textarea").style("width", "100px").style("height", "70px").text(
+      q.lst.slice(1).map((d) => "start" in d ? this.toDisplay(d.start) : "").join("\n")
+    ).on("change", () => this.handleInputChange()).on("keyup", async (event) => {
+      if (!keyupEnter(event) && event.key != 8 && event.key != "Enter") return;
+      if (!this.dom.inputsDiv.selectAll("input").node().value) return;
+      this.handleInputChange();
+    });
+    boundaryDiv.append("div").style("font-size", ".6em").style("margin-left", "1px").style("color", "#858585").html("Enter numeric values </br>seperated by ENTER");
+    this.renderBoundaryInputDivs();
+  }
+  renderBoundaryInputDivs() {
+    const data = this.q.lst;
+    const holder = this.dom.rangeAndLabelDiv;
+    holder.selectAll("*").remove();
+    const grid = holder.append("div").style("display", "grid").style("grid-template-columns", "auto auto").style("column-gap", "20px").style("align-items", "center");
+    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Range");
+    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Bin label");
+    for (const d of data) {
+      grid.append("div").attr("name", "range").html(d.range);
+      grid.append("div").append("input").attr("type", "text").style("margin", "2px 0px").property("value", d.label).on("change", function() {
+        d.label = this.value;
+      });
+    }
+    this.dom.customBinRanges = this.dom.inputsDiv.selectAll('div[name="range"]').data(data);
+    this.dom.customBinLabelInput = this.dom.inputsDiv.selectAll("input").data(data);
+  }
+  handleInputChange(eventType = "") {
+    const self = this.tw;
+    const inputs = this.dom.inputsDiv.selectAll("input");
+    inputs.property("value", "");
+    const data = this.processCustomBinInputs();
+    if (data == void 0) {
+      return;
+    }
+    if (self.q.hiddenValues) this.tw.q.hiddenValues = self.q.hiddenValues;
+    if (this.binsChanged(data, this.q.lst)) {
+      this.q.lst = data;
+    }
+    this.renderBoundaryInputDivs();
+    if (eventType != "drag") this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+  binsChanged(data, qlst) {
+    if (data.length != qlst.length) return true;
+    if (Object.keys(data[0]).length !== Object.keys(qlst[0]).length) return true;
+    for (const [i, bin] of qlst.entries()) {
+      for (const k of Object.keys(bin)) {
+        if (bin[k] && bin[k] !== data[i][k]) {
+          return true;
+        }
+      }
+    }
+    return false;
+  }
+  processCustomBinInputs() {
+    const self = this.termsetting;
+    const startinclusive = this.editHandler.boundaryInclusion == "startinclusive";
+    const stopinclusive = this.editHandler.boundaryInclusion == "stopinclusive";
+    const inputs = this.dom.inputsDiv.node().querySelectorAll("input");
+    const inputData = this.dom.customBinBoundaryInput.property("value").split("\n").filter((d) => d != "" && !isNaN(d));
+    const trackBins = new Set(inputData);
+    if (!trackBins.size) return this.tw.q.lst;
+    const sortedBins = Array.from(trackBins).map((v) => this.toStored(Number(v))).sort((a, b) => a - b);
+    const data = [
+      // first bin: StartUnbounded type
+      {
+        startunbounded: true,
+        stop: sortedBins[0],
+        startinclusive: false,
+        stopinclusive,
+        label: inputs[0].value
+      }
+    ];
+    if (!data[0].label) data[0].label = get_bin_label(data[0], self.q, self.term.valueConversion);
+    if (!data[0].range) data[0].range = get_bin_range_equation(data[0], self.q, self.term.valueConversion);
+    for (const [i, d] of sortedBins.entries()) {
+      let bin;
+      const label = inputs[i + 1]?.value || "";
+      if (i !== trackBins.size - 1) {
+        bin = {
+          start: +d,
+          startinclusive,
+          stopinclusive,
+          stop: sortedBins[i + 1],
+          label
+          //range: ''
+        };
+      } else {
+        bin = {
+          start: +d,
+          startinclusive,
+          stopinclusive: false,
+          stopunbounded: true,
+          label
+          //range: ''
+        };
+      }
+      if (bin.label === "" || bin.label === void 0) bin.label = get_bin_label(bin, self.q, self.term.valueConversion);
+      if (bin.range === "" || bin.range === void 0)
+        bin.range = get_bin_range_equation(bin, self.q, self.term.valueConversion);
+      data.push(bin);
+    }
+    return data;
+  }
+  getEditedQ(destroyDom = true) {
+    const lst = this.processCustomBinInputs();
+    if (destroyDom) {
+      for (const name of Object.keys(this.dom)) {
+        this.dom[name].remove();
+        delete this.dom[name];
+      }
+    }
+    return {
+      mode: "discrete",
+      type: "custom-bin",
+      lst
+    };
+  }
+  undoEdits() {
+    this.q = this.getDefaultQ();
+    this.dom.inputsDiv.selectAll("*").remove();
+    this.renderCustomBinInputs();
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+};
+
+export {
+  NumCustomBinEditor
+};
+//# sourceMappingURL=chunk-COWQ5L4E.js.map

package/dist/chunk-CSNF6JCR.js

@@ -0,0 +1,14 @@
+// src/block.lazyload.js
+var Block;
+async function blocklazyload(arg) {
+  if (!Block) {
+    const b = await import("./block-KHDTWYNM.js");
+    Block = b.Block;
+  }
+  return new Block(arg);
+}
+
+export {
+  blocklazyload
+};
+//# sourceMappingURL=chunk-CSNF6JCR.js.map

package/dist/chunk-D26T74BT.js

@@ -0,0 +1,382 @@
+import {
+  Menu
+} from "./chunk-7XZA2XR2.js";
+import {
+  mclass
+} from "./chunk-SREWSTR6.js";
+import {
+  copyMerge
+} from "./chunk-HBNB5TRH.js";
+import {
+  select_default
+} from "./chunk-I6Y4O3RR.js";
+
+// plots/matrix/matrix.sorterUi.js
+var alphabet = `ABCDEFGHIJKLMNOPQRSTUVWXYZ`.split("");
+function getSorterUi(opts) {
+  const { controls, holder } = opts;
+  const parent = controls.parent;
+  const s = structuredClone(parent.config.settings.matrix);
+  const l = s.controlLabels;
+  const tip = new Menu({ padding: "", parent_menu: parent.app.tip?.d.node() });
+  let input, theads = [], sectionData, dragged = {};
+  const self = {
+    dom: { tip },
+    opts,
+    highlightColor: "none",
+    label: `Sort ${l.Samples}`,
+    title: `Set how to sort ${l.samples}`,
+    type: "custom",
+    expanded: opts.expanded || false,
+    expandedSection: opts.expandedSection || "",
+    init(overrides = {}, _opts = {}) {
+      tip.clear().hide();
+      if (parent.config.settings.matrix != s) copyMerge(s, parent.config.settings.matrix);
+      if (s !== overrides) copyMerge(s, overrides);
+      self.settings = s;
+      self.activeOption = structuredClone(s.sortOptions[s.sortSamplesBy]);
+      sectionData = [
+        // TODO: add an advanced menu section here for sortBySampleAncestry = 'first'
+        {
+          label: `For each selected row, sort ${l.samples} by matching data`,
+          notDraggable: true,
+          tiebreakers: [],
+          handler: handleSelectedTerms
+        },
+        ...self.activeOption.sortPriority,
+        {
+          label: `Sort ${l.samples} by name, alphabetically`,
+          notDraggable: true,
+          tiebreakers: []
+        }
+      ];
+      Object.assign(opts, _opts);
+      opts.holder.selectAll("*").remove();
+      const topDiv = opts.holder.append("div").style("text-align", "right");
+      topDiv.append("button").html("Apply").on("click", apply);
+      topDiv.append("button").html("Reset").on("click", (event, d) => self.init());
+      const table = opts.holder.append("table");
+      const tr = table.append("thead");
+      tr.append("th").html("Priority").style("text-align", "left").style("max-width", "0px");
+      tr.append("th").html("Description");
+      tr.append("th").html("Action");
+      let i = 0, j = 0;
+      for (const sd of sectionData) {
+        const hasTbOrder = sd.tiebreakers?.[0]?.order || sd.handler;
+        const thead = table.append("thead").datum(sd).property("draggable", !sd.notDraggable).attr("droppable", true).on("dragstart", trackDraggedSection).on("dragover", highlightSection).on("dragleave", unhighlightSection).on("drop", adjustSortPriority);
+        theads.push(select_default(thead));
+        const tr2 = thead.append("tr").style("background-color", "#eee").on("mouseover", undoMouseoverHighlights);
+        tr2.append("th").style("padding", "5px").style("vertical-align", "top").style("font-weight", 400).html(alphabet[j++]).on("click", hasTbOrder ? toggleSection : null);
+        const td2 = tr2.append("th").style("padding", "5px").style("vertical-align", "top").style("text-align", "left").style("cursor", hasTbOrder ? "pointer" : "").on("click", hasTbOrder ? toggleSection : null);
+        td2.append("span").style("margin-right", "12px").style("font-weight", 400).html(sd.label);
+        tr2.append("th").style("padding", "5px").style("vertical-align", "top").style("text-align", "center").style("font-weight", 400).style("cursor", hasTbOrder ? "pointer" : "").append("span").html(hasTbOrder ? "Details" : " ").on("click", hasTbOrder ? toggleSection : null);
+        const tbody = table.append("tbody").datum(sd).style("display", self.expandedSection == "all" || self.expandedSection == sd.label ? "" : "none");
+        for (const tb of sd.tiebreakers) {
+          if (tb.skip) continue;
+          if (!sd.types?.includes("geneVariant")) {
+            continue;
+          }
+          const tr3 = tbody.append("tr").on("mouseover", undoMouseoverHighlights).datum(tb).attr("draggable", !tb.disabled && sd.types?.length !== 0).attr("droppable", !tb.disabled && sd.types?.length !== 0).on("dragstart", trackDraggedTieBreaker).on("dragover", highlightTieBreaker).on("dragleave", unhighlightTieBreaker).on("drop", adjustTieBreakers);
+          if (!tb.disabled) i++;
+          const td1 = tr3.append("td").attr(
+            "title",
+            tb.disabled ? `This tiebreaker is currently not being used to sort ${l.cases}. Check the box to use.` : `The number indicates the order in which this tiebreaker is used. Unched the box to skip.`
+          ).datum(tb);
+          td1.style("padding", "5px").style("vertical-align", "top").style("text-align", "center");
+          td1.append("span").html(!tb.disabled ? i : "");
+          const td22 = tr3.append("td").style("opacity", tb.disabled ? 0.5 : 1).style("padding", "5px").style("vertical-align", "top").style("max-width", "500px");
+          td22.append("span").html(tb.label || "");
+          if (!tb.disabled) {
+            const label = td22.append("label");
+            label.append("span").html("<br>(use data list order ");
+            if (!tb.isOrdered) tb.isOrdered = false;
+            const checkbox = label.append("input").datum(tb).attr("type", "checkbox").property("checked", tb.isOrdered).style("vertical-align", "bottom").on("change", toggleTieBreakerIsOrdered);
+            label.append("span").html(")");
+            const order = tb.order;
+            td22.append("div").attr("class", "sjpp-matrix-sorter-ui-value").selectAll("div").data(
+              order.map((key, index) => ({
+                lstName: "order",
+                key,
+                cls: mclass[key],
+                tb,
+                dragstart: trackDraggedValue,
+                dragover: highlightValue,
+                dragleave: unhighlightValue,
+                drop: adjustValueOrder,
+                filterByClass: s.filterByClass,
+                index
+              }))
+            ).enter().append("div").style("display", tb.isOrdered ? "block" : "inline-block").each(setValueDiv);
+            if (tb.notUsed?.length) {
+              const notUsed = td22.append("div");
+              notUsed.append("div").attr("data-testid", "sjpp-matrix-sorter-ui-hidden-add").style("display", "inline-block").style("padding", "5x").style("vertical-align", "top").style("padding", "3px 5px").style("cursor", "pointer").html(`+Add`).on("click", showNotUsedValues);
+            }
+          }
+          const td3 = tr3.append("td").style("text-align", "center").style("vertical-align", "top");
+          if (tb.mayToggle) {
+            td3.append("button").datum(tb).html(tb.disabled ? "Enable" : "Disable").on("click", toggleTieBreakerDisabled);
+          }
+        }
+        const lastTr = tbody.append("tr").attr("draggable", true).on("mouseover", undoMouseoverHighlights);
+        lastTr.append("td").html("&nbsp;");
+        const tdNew = lastTr.append("td").style("text-align", "left").html(sd.details && !sd.order?.length ? sd.details : "&nbsp;");
+        if (sd.handler) sd.handler(tdNew, lastTr, tbody);
+        lastTr.append("td").html("&nbsp;");
+      }
+    },
+    toggleSection,
+    trackDraggedSection,
+    highlightSection,
+    unhighlightSection,
+    adjustSortPriority,
+    trackDraggedTieBreaker,
+    highlightTieBreaker,
+    unhighlightTieBreaker,
+    adjustTieBreakers,
+    trackDraggedValue,
+    highlightValue,
+    unhighlightValue,
+    adjustValueOrder,
+    apply
+  };
+  function toggleSection(event, d = { label: "all" }) {
+    self.expandedSection = self.expandedSection === d.label ? "" : d.label;
+    self.expanded = !!self.expandedSection;
+    self.init();
+  }
+  function trackDraggedSection(event, d) {
+    dragged.type = "sortPriority";
+    dragged.data = d;
+    dragged.index = self.activeOption.sortPriority.indexOf(d);
+  }
+  function highlightSection(event, d) {
+    if (dragged.type != "sortPriority" || d == dragged.data) return;
+    event.preventDefault();
+    const i = self.activeOption.sortPriority.indexOf(d);
+    const borderSide = i < dragged.index ? "border-top" : i > dragged.index ? "border-bottom" : "";
+    if (!borderSide) return;
+    select_default(this).selectAll("th").style(borderSide, "2px solid blue");
+  }
+  function unhighlightSection(event, d) {
+    if (dragged.type != "sortPriority") return;
+    event.preventDefault();
+    select_default(this).selectAll("th").style("border", "none");
+  }
+  function adjustSortPriority(event, d) {
+    if (d == dragged.data) return;
+    const i = self.activeOption.sortPriority.indexOf(d);
+    const s2 = parent.config.settings.matrix;
+    self.activeOption.sortPriority.splice(dragged.index, 1);
+    self.activeOption.sortPriority.splice(i, 0, dragged.data);
+    self.init({
+      sortOptions: {
+        [s2.sortSamplesBy]: self.activeOption
+      }
+    });
+  }
+  function trackDraggedTieBreaker(event, d) {
+    dragged.type = "tiebreaker";
+    dragged.data = d;
+    dragged.sectionData = event.target.closest("tbody").__data__;
+    dragged.priorityIndex = self.activeOption.sortPriority.indexOf(dragged.sectionData);
+    dragged.index = dragged.sectionData.tiebreakers.indexOf(d);
+  }
+  function highlightTieBreaker(event, d) {
+    if (dragged.type != "tiebreaker" || d == dragged.data) return;
+    event.preventDefault();
+    const i = dragged.sectionData.tiebreakers.indexOf(d);
+    const borderSide = i < dragged.index ? "border-top" : i > dragged.index ? "border-bottom" : "";
+    if (!borderSide) return;
+    select_default(this).selectAll("td:nth-child(2)").style(borderSide, "2px solid blue");
+  }
+  function unhighlightTieBreaker(event, d) {
+    if (dragged.type != "tiebreaker") return;
+    event.preventDefault();
+    select_default(this).selectAll("td:nth-child(2)").style("border", "none");
+  }
+  function toggleTieBreakerIsOrdered(event, tb) {
+    event.stopPropagation();
+    tb.isOrdered = !tb.isOrdered;
+    self.init({
+      sortOptions: {
+        [s.sortSamplesBy]: self.activeOption
+      }
+    });
+  }
+  function toggleTieBreakerDisabled(event, tb) {
+    event.stopPropagation();
+    tb.disabled = !tb.disabled;
+    self.init({
+      sortOptions: {
+        [s.sortSamplesBy]: self.activeOption
+      }
+    });
+  }
+  function adjustTieBreakers(event, d) {
+    if (dragged.type != "tiebreaker" || d == dragged.data) return;
+    event.preventDefault();
+    const i = dragged.sectionData.tiebreakers.indexOf(d);
+    const s2 = parent.config.settings.matrix;
+    dragged.sectionData.tiebreakers.splice(dragged.index, 1);
+    dragged.sectionData.tiebreakers.splice(i, 0, dragged.data);
+    self.init({
+      sortOptions: {
+        [s2.sortSamplesBy]: self.activeOption
+      }
+    });
+  }
+  function setValueDiv(d) {
+    const title = [];
+    if (d.tb.notUsed?.includes(d.key)) title.push(`- Click on this label to include in used data values.`);
+    if (d.filterByClass[d.key])
+      title.unshift("- Click on the corresponding entry in the matrix legend or Mutation/CNV menus to unhide");
+    if (title.length) title.unshift(`To use this data value for sorting ${l.samples}:`);
+    const skipped = d.tb.notUsed?.includes(d.key);
+    const opacity = d.filterByClass[d.key] == "value" ? 0.5 : 1;
+    const div = select_default(this).attr("aria-label", title.length ? title.join("\n") : `Click to not use this data value to sort ${l.samples}`).attr("draggable", d.tb.isOrdered ? true : false).attr("droppable", d.tb.isOrdered ? true : false).style("width", "fit-content").style("margin-right", "10px").style("overflow", "hidden").style("white-space", "nowrap").style("opacity", opacity).style("cursor", "pointer").on("dragstart", d.dragstart).on("dragover", d.dragover).on("dragleave", d.dragleave).on("drop", d.drop).on("mouseenter", () => toggle.style("opacity", 1)).on("mouseleave", () => toggle.style("opacity", 0)).on("click", () => {
+      if (title.length) {
+        const cls = "sjpp-matrix-sorter-value-note";
+        div.selectAll(`.${cls}`).remove();
+        const note = div.append("div").attr("class", cls).style("max-width", "200px").style("padding", "5px");
+        note.html(title.join("<br>"));
+        if (d.filterByClass[d.key]) return;
+      }
+      const targetLstName = d.lstName == "order" ? "notUsed" : "order";
+      if (!d.tb[targetLstName]) d.tb[targetLstName] = [];
+      const targetLst = d.tb[targetLstName];
+      d.tb[d.lstName].splice(d.index, 1);
+      if (d.lstName == "order") targetLst.unshift(d.key);
+      else targetLst.push(d.key);
+      self.init({
+        sortOptions: {
+          [s.sortSamplesBy]: self.activeOption
+        }
+      });
+    });
+    div.append("div").style("display", "inline-block").style("cursor", "pointer").style("width", "12px").style("height", "12px").style("margin-right", "3px").style("background-color", d.cls.color);
+    div.append("span").style("cursor", "pointer").style("text-decoration", d.filterByClass[d.key] == "case" ? "line-through" : "").html(d.cls.label + (d.filterByClass[d.key] ? " (<i>not used since this value is hidden</i>)" : ""));
+    const toggle = div.append("div").style("display", "inline-block").style("width", "12px").style("cursor", "pointer").style("opacity", 0).style("color", d.lstName == "order" ? "red" : "green").html(d.lstName == "order" ? "&cross;" : "&check;");
+  }
+  function trackDraggedValue(event, d) {
+    event.stopPropagation?.();
+    dragged.type = "value";
+    dragged.data = d;
+    dragged.sectionData = event.target.closest("tbody").__data__;
+    dragged.priorityIndex = self.activeOption.sortPriority.indexOf(dragged.sectionData);
+    dragged.tiebreaker = event.target.closest("tr").__data__;
+    dragged.tbIndex = dragged.sectionData.tiebreakers.indexOf(dragged.priorityIndex);
+    dragged.order = dragged.tiebreaker.order;
+  }
+  function highlightValue(event, d) {
+    event.stopPropagation?.();
+    if (dragged.type != "value" || d == dragged.data) return;
+    if (d.tb != dragged.data.tb) return;
+    event.preventDefault();
+    const i = dragged.order.indexOf(d);
+    select_default(this).style("border", "2px solid blue");
+  }
+  function unhighlightValue(event, d) {
+    event.stopPropagation?.();
+    if (dragged.type != "value") return;
+    event.preventDefault();
+    select_default(this).style("border", "none");
+  }
+  function adjustValueOrder(event, d) {
+    event.stopPropagation?.();
+    if (dragged.type != "value" || d == dragged.data) return;
+    event.preventDefault();
+    const s2 = self.settings;
+    dragged.data.tb[dragged.data.lstName].splice(dragged.data.index, 1);
+    d.tb[d.lstName].splice(d.index, 0, dragged.data.key);
+    const j = s2.hiddenVariants.indexOf(dragged.data.key);
+    const hiddenVariants = structuredClone(s2.hiddenVariants);
+    const filterByClass = structuredClone(s2.filterByClass);
+    if (j != -1) {
+      hiddenVariants.splice(j, 1);
+      filterByClass[dragged.data.key] = false;
+    }
+    self.init({
+      hiddenVariants,
+      filterByClass,
+      sortOptions: {
+        [s2.sortSamplesBy]: self.activeOption
+      }
+    });
+  }
+  function showNotUsedValues(event, tb) {
+    event?.stopPropagation();
+    const availDiv = tip.clear().d.append("div").attr("data-testid", "sjpp-matrix-sorter-ui-hidden-vals").style("margin-top", "3px").style("vertical-align", "top").style("padding-left", "12px");
+    availDiv.selectAll("div").data(
+      tb.notUsed.map((key, index) => ({
+        lstName: "notUsed",
+        key,
+        cls: mclass[key],
+        tb,
+        dragstart: trackDraggedValue,
+        dragover: highlightValue,
+        dragleave: unhighlightValue,
+        drop: adjustValueOrder,
+        filterByClass: s.filterByClass,
+        index
+      }))
+    ).enter().append("div").style("display", "block").each(setValueDiv);
+    tip.showunder(event.target);
+  }
+  function apply() {
+    parent.app.tip?.hide();
+    parent.app.dispatch({
+      type: "plot_edit",
+      id: parent.id,
+      config: {
+        settings: {
+          matrix: {
+            sortOptions: {
+              [s.sortSamplesBy]: self.activeOption
+            }
+          }
+        }
+      }
+    });
+  }
+  function undoMouseoverHighlights() {
+  }
+  function handleSelectedTerms(td, tr) {
+    if (!parent.selectedTermsToSortAgainst?.length) {
+      td.html(`Click on a matrix row label and the left triangle to add an entry here`);
+      return;
+    }
+    const selectedTerms = parent.selectedTermsToSortAgainst.map((t) => {
+      return {
+        t,
+        label: t.tw.term.name + (t.tw.term.type == "geneVariant" ? " alterations" : " values")
+      };
+    });
+    const tbody = select_default(tr.node().parentNode);
+    tbody.selectAll("tr").remove();
+    tbody.selectAll("tr").data(selectedTerms).enter().append("tr").selectAll("td").data((d, i) => [
+      { label: i + 1, textAlign: "center", cursor: "", t: d.t },
+      { label: d.label, textAlign: "left", cursor: "" },
+      {
+        label: "Delete",
+        textAlign: "center",
+        cursor: "pointer",
+        click: parent.unsortSamplesAgainstTerm,
+        data: d
+      }
+    ]).enter().append("td").style("text-align", (d) => d.textAlign).style("cursor", (d) => d.cursor).html((d) => d.label).on("click", (event, d) => d.click?.(event, d));
+  }
+  self.init();
+  self.api = {
+    main: self.init,
+    destroy: () => {
+      opts.holder.selectAll("*").remove();
+    }
+  };
+  if (opts.debug) self.api.Inner = self;
+  return self.api;
+}
+
+export {
+  getSorterUi
+};
+//# sourceMappingURL=chunk-D26T74BT.js.map