@sjcrh/proteinpaint-client 2.213.0 → 2.214.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-AC7Y7AXT.js +1367 -0
- package/dist/AggMatrixInput-FJU2LFFO.js +406 -0
- package/dist/AggregateMatrix-RJ2VERUN.js +41 -0
- package/dist/AppHeader-NRHKFUAZ.js +830 -0
- package/dist/BoxPlot-MIY77WRA.js +1208 -0
- package/dist/CorrelationVolcano-TD4WNLVB.js +617 -0
- package/dist/Cuminc-JC2RB2JJ.js +1220 -0
- package/dist/DE-B7OOKFKF.js +89 -0
- package/dist/DEinput-NJYGTYXI.js +501 -0
- package/dist/DM-MSAEMNJD.js +90 -0
- package/dist/DifferentialAnalysis-K2OYA3GC.js +239 -0
- package/dist/Disco-3P2JTHPH.js +3389 -0
- package/dist/Disco.UI-TGJKDVPZ.js +243 -0
- package/dist/DmrPlot-COQ7G42N.js +362 -0
- package/dist/GB-TIAFRKC6.js +1392 -0
- package/dist/GSEA-SORUSH2I.js +875 -0
- package/dist/GeneExpInput-IJRT3ET6.js +42 -0
- package/dist/Geomap-4JSVYPKA.js +84 -0
- package/dist/HicApp-SFHELIGY.js +2245 -0
- package/dist/IDCViewer-2WDE35RN.js +10812 -0
- package/dist/NumBinaryEditor-3AJMTAM7.js +279 -0
- package/dist/NumBinaryEditor.unit.spec-YQAXVSJJ.js +312 -0
- package/dist/NumContEditor-GNRVX2GF.js +105 -0
- package/dist/NumContEditor.unit.spec-3MKW3BNU.js +164 -0
- package/dist/NumCustomBinEditor-XGEB7IZ5.js +33 -0
- package/dist/NumCustomBinEditor.unit.spec-3LBRRI7C.js +397 -0
- package/dist/NumDiscreteEditor-RASHJSS7.js +170 -0
- package/dist/NumDiscreteEditor.unit.spec-P5CI5OCT.js +233 -0
- package/dist/NumRegularBinEditor-ELSWMUJL.js +33 -0
- package/dist/NumRegularBinEditor.unit.spec-T7EUBNSW.js +278 -0
- package/dist/NumSplineEditor-RTNZTUQ5.js +210 -0
- package/dist/NumSplineEditor.unit.spec-POPB72U2.js +224 -0
- package/dist/NumericDensity-ASPLZQTW.js +33 -0
- package/dist/NumericDensity.unit.spec-WP7OAVND.js +418 -0
- package/dist/NumericHandler-X6MQSXNB.js +34 -0
- package/dist/NumericHandler.unit.spec-ET5ZEHDL.js +214 -0
- package/dist/ProteomeInput-CE2QSGHY.js +388 -0
- package/dist/Regression-TJJGAFZD.js +1416 -0
- package/dist/RunChart2-VSLNFIXS.js +749 -0
- package/dist/SC-AJWKVCOK.js +1348 -0
- package/dist/Violin-PEMCXVES.js +1064 -0
- package/dist/Volcano-OXSIAQ2Z.js +2456 -0
- package/dist/Wsi-AG2DF27X.js +629 -0
- package/dist/adSandbox-2PY3V5QD.js +33 -0
- package/dist/animatedBubbleChart-IN5UVZAD.js +547 -0
- package/dist/app-3BNMJWHT.js +32 -0
- package/dist/app-4J3OJFJN.js +42 -0
- package/dist/app.js +14 -14
- package/dist/bam-3GIL7RAN.js +876 -0
- package/dist/barchart-GEVUNJ3P.js +42 -0
- package/dist/barchart2-FN3EICRE.js +309 -0
- package/dist/block-KHDTWYNM.js +6250 -0
- package/dist/block.init-ZCL56N7C.js +33 -0
- package/dist/block.mds.expressionrank-FOELK7HF.js +354 -0
- package/dist/block.mds.geneboxplot-XG3HH5SQ.js +823 -0
- package/dist/block.mds.junction-IPTVBAVA.js +1539 -0
- package/dist/block.mds.svcnv-XPSRDCKO.js +6796 -0
- package/dist/block.svg-KCOUBG3K.js +159 -0
- package/dist/block.tk.aicheck-PXTLZ4NL.js +278 -0
- package/dist/block.tk.ase-FE4O3CXJ.js +360 -0
- package/dist/block.tk.bam-LKSL2QK7.js +1901 -0
- package/dist/block.tk.bedgraphdot-UDXTZQTP.js +379 -0
- package/dist/block.tk.bigwig.ui-JQX4DZY3.js +206 -0
- package/dist/block.tk.hicstraw-XGNFNV2D.js +818 -0
- package/dist/block.tk.junction-MJ42DFHW.js +2358 -0
- package/dist/block.tk.junction.textmatrixui-6UHTYDX2.js +194 -0
- package/dist/block.tk.ld-E35Z5Q2S.js +94 -0
- package/dist/block.tk.menu-RF4EPDZB.js +1054 -0
- package/dist/block.tk.pgv-H4LW2F7J.js +938 -0
- package/dist/brainImaging-R3F3PE6Z.js +555 -0
- package/dist/brainRegions-YQVQVKL4.js +217 -0
- package/dist/bubbleHeatmap-5O64CGYG.js +378 -0
- package/dist/cellTypeBubbleHeatmap-WWFWVCZ4.js +278 -0
- package/dist/chunk-2P47X7BT.js +80 -0
- package/dist/chunk-2PUOEKQW.js +182 -0
- package/dist/chunk-2QJ5YW7G.js +446 -0
- package/dist/chunk-2RZMDOJJ.js +550 -0
- package/dist/chunk-3FLNHVHA.js +54 -0
- package/dist/chunk-3KQKNLHI.js +339 -0
- package/dist/chunk-3ZGNYCH6.js +98 -0
- package/dist/chunk-45GG3VPI.js +274 -0
- package/dist/chunk-4HEBUKW2.js +56 -0
- package/dist/chunk-4QTTLHAM.js +1278 -0
- package/dist/chunk-5ANMO7OR.js +299 -0
- package/dist/chunk-5IC2RQNV.js +2784 -0
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- package/dist/chunk-5OPIM5UQ.js +263 -0
- package/dist/chunk-7B3MFR7R.js +31 -0
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- package/dist/chunk-LYKASWJ5.js +2902 -0
- package/dist/chunk-MJDIDCTT.js +119 -0
- package/dist/chunk-MMWHJ4BH.js +59 -0
- package/dist/chunk-NDJ4LBL3.js +170 -0
- package/dist/chunk-NIZVZ333.js +203 -0
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- package/dist/chunk-OR6P5PR4.js +339 -0
- package/dist/chunk-OSCUO5KD.js +70 -0
- package/dist/chunk-QK4SEPZE.js +1233 -0
- package/dist/chunk-QZXFF4ID.js +103 -0
- package/dist/chunk-RIRH565U.js +217 -0
- package/dist/chunk-RIRIGN5F.js +468 -0
- package/dist/chunk-S6343VGL.js +217 -0
- package/dist/chunk-SREWSTR6.js +1616 -0
- package/dist/chunk-SREWSTR6.js.map +7 -0
- package/dist/chunk-V4I4NRWW.js +34 -0
- package/dist/chunk-VK4Q5SO4.js +2327 -0
- package/dist/chunk-VKFVPIA7.js +237 -0
- package/dist/chunk-VYFOWZY7.js +26 -0
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- package/dist/chunk-Z6HJLJ2W.js +194 -0
- package/dist/chunk-ZJAXRB7K.js +37 -0
- package/dist/chunk-ZL2M2MPP.js +783 -0
- package/dist/cohort-ONANZDY5.js +70 -0
- package/dist/condition-NUBF4YSS.js +327 -0
- package/dist/controls-URVB3DH2.js +34 -0
- package/dist/controls.config-3R2MMWW5.js +34 -0
- package/dist/correlation-HA5MNQAE.js +95 -0
- package/dist/customdata.inputui-KN3ZI56U.js +284 -0
- package/dist/dataDownload-3PRPXLBV.js +329 -0
- package/dist/databrowser.ui-URTFAANK.js +425 -0
- package/dist/dictionary-OWTFXDAL.js +113 -0
- package/dist/dnaMethylation-YWKAU5FO.js +33 -0
- package/dist/dnaMethylation.integration.spec-T4PTIFLE.js +198 -0
- package/dist/dofetch-BPXQH2BQ.js +48 -0
- package/dist/e2pca-VCUSAIWF.js +344 -0
- package/dist/ep-SWVNGKAP.js +1249 -0
- package/dist/expclust.gdc.spec-WQBILTT5.js +302 -0
- package/dist/facet-4VGVDLCU.js +519 -0
- package/dist/gb-NQNMLAN2.js +81 -0
- package/dist/geneExpClustering-LBEA4MFK.js +244 -0
- package/dist/geneExpression-T7VRPFMN.js +33 -0
- package/dist/geneExpression-YGQAXIXM.js +310 -0
- package/dist/geneExpression.unit.spec-O3GTSFC4.js +128 -0
- package/dist/geneORA-A4V7B4TT.js +273 -0
- package/dist/geneRanking-G556D44I.js +548 -0
- package/dist/geneVariant-CRINPRE5.js +289 -0
- package/dist/geneVariant-HGNB2M5Q.js +36 -0
- package/dist/geneVariant.integration.spec-FKESYYXK.js +503 -0
- package/dist/genefusion.ui-OS5DZLHT.js +303 -0
- package/dist/geneset-6IYLHN2T.js +203 -0
- package/dist/genomeBrowser.spec-CRW6HZEX.js +276 -0
- package/dist/grin2-2ZM5J6IY.js +949 -0
- package/dist/grin2-PUMRW6PS.js +70 -0
- package/dist/hierCluster-LA5AMP66.js +55 -0
- package/dist/hierCluster-OYOHFDEK.js +59 -0
- package/dist/hierCluster.config-UKVHTPJ6.js +36 -0
- package/dist/hierCluster.integration.spec-6AYYST7M.js +483 -0
- package/dist/hierCluster.interactivity-5ZIL2SIF.js +49 -0
- package/dist/hierCluster.renderers-IUNCW6A2.js +19 -0
- package/dist/imagePlot-C6B6VHSQ.js +156 -0
- package/dist/importPlot-WDWIM2RH.js +8 -0
- package/dist/isoformExpression-XKWQBR2M.js +35 -0
- package/dist/isoformExpression.unit.spec-CQFMZONS.js +237 -0
- package/dist/junction-COJEPWLG.js +36 -0
- package/dist/junction.customTerm-Y4WVXFK2.js +16 -0
- package/dist/junction.unit.spec-L4F7HUOF.js +182 -0
- package/dist/launch.adhoc-HNKW2HH5.js +37 -0
- package/dist/leftlabel.sample-KWSX7IOS.js +258 -0
- package/dist/lollipop-SL7TP25K.js +166 -0
- package/dist/maf-32AWSYHI.js +455 -0
- package/dist/maftimeline-OHNRK3Y2.js +587 -0
- package/dist/matrix-CHYGXHGL.js +54 -0
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- package/dist/matrix.cells-4IHL6PQC.js +26 -0
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- package/dist/matrix.data-BDSR5NNL.js +23 -0
- package/dist/matrix.groups-VGTU2ZYC.js +26 -0
- package/dist/matrix.integration.spec-GVPJT2SJ.js +3160 -0
- package/dist/matrix.interactivity-4LBV57KT.js +37 -0
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- package/dist/mds.samplescatterplot-TEDCX5M5.js +1545 -0
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- package/dist/multivalue-MRRF7WUG.js +83 -0
- package/dist/numericDictTermCluster-LRY554HK.js +63 -0
- package/dist/oncomatrix-5YESGMC5.js +290 -0
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- package/dist/plot.barplot-IZJMM7HO.js +97 -0
- package/dist/plot.boxplot-OXDWGXVO.js +146 -0
- package/dist/plot.brainImaging-TZJINY47.js +51 -0
- package/dist/plot.disco-G2E5HCR5.js +99 -0
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- package/dist/plot.vaf2cov-TG4ZWBOY.js +253 -0
- package/dist/polar2-KKLKRETZ.js +232 -0
- package/dist/profileForms-MA743GS4.js +941 -0
- package/dist/profilePlot-K75DW43W.js +49 -0
- package/dist/proteinView-FKWQBBX4.js +1357 -0
- package/dist/proteomeCohortCompare-VZVP4WOH.js +912 -0
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- package/dist/singleCellPlot-64JKBI5G.js +48 -0
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- /package/dist/{studyCatalog-OAGHQXKY.js.map → studyCatalog-56TO46A5.js.map} +0 -0
- /package/dist/{summarizeCnvGeneexp-K6XO5YEP.js.map → summarizeCnvGeneexp-F7MMS55Q.js.map} +0 -0
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- /package/dist/{summarizeMutationDiagnosis-ACFWADSQ.js.map → summarizeMutationDiagnosis-GSQN76UC.js.map} +0 -0
- /package/dist/{summarizeMutationSurvival-XPFPN4N5.js.map → summarizeMutationSurvival-DADX2MAN.js.map} +0 -0
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- /package/dist/{summary.integration.spec-2DE653PH.js.map → summary.integration.spec-EWYBQXS3.js.map} +0 -0
- /package/dist/{summaryInput-GO75OPLA.js.map → summaryInput-6C7ZY5Z5.js.map} +0 -0
- /package/dist/{sunburst-BSCFRYSV.js.map → sunburst-WW4LZ5AT.js.map} +0 -0
- /package/dist/{survival-BEP7JNML.js.map → survival-L2IAJZXL.js.map} +0 -0
- /package/dist/{survival-XUO2D6CX.js.map → survival-LAIUKCZC.js.map} +0 -0
- /package/dist/{survival.integration.spec-EO5KAFDQ.js.map → survival.integration.spec-PTFUUTBJ.js.map} +0 -0
- /package/dist/{svgraph-YGXOB3QY.js.map → svgraph-J5DEKHSP.js.map} +0 -0
- /package/dist/{svmr-MATMMI4E.js.map → svmr-YLS3OPQS.js.map} +0 -0
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- /package/dist/{termCollection-ZUJFB7YB.js.map → termCollection-VNEW4PUC.js.map} +0 -0
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- /package/dist/{tk-RNUMIS5P.js.map → tk-PZNFQ4NU.js.map} +0 -0
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- /package/dist/{wsi.direct-J4SNIUUW.js.map → wsi.direct-CHL5SXDS.js.map} +0 -0
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import {
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make_one_checkbox
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HandlerBase
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get_bin_label,
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get_bin_range_equation
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toStoredUnit,
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toUserUnit
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// termsetting/handlers/NumBinaryEditor.ts
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var NumBinaryEditor = class extends HandlerBase {
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constructor(opts, handler) {
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super(opts);
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this.dom = {};
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this.cutoffPercentile = 50;
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this.opts = opts;
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}
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/* the cutoff is stored in the term's own unit but entered and shown in its user-facing one.
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both are identity functions unless the term declares valueConversion{} */
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toDisplay(v) {
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toStored(v) {
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return toStoredUnit(v, this.tw.term);
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async showEditMenu(div) {
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this.tw = this.handler.tw;
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const isRemounting = !!this.dom.density_div && this.handler.dom.editDiv?.node().contains(this.dom.density_div.node());
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if (isRemounting) {
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await this.handler.density.showViolin(this.dom.density_div, this.getBoundaryOpts());
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} else {
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}
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this.dom.density_div = div.append("div");
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await this.handler.density.showViolin(this.dom.density_div);
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await this.handler.density.setBinLines(this.getBoundaryOpts());
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this.dom.boundaryInclusionDiv = div.append("div").style("padding", "5px");
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this.dom.cutoff_div = div.append("div").style("padding", "10px");
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this.dom.inputsDiv = div.append("div").style("padding", "10px").style("display", "flex").style("width", "100%");
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this.renderBoundaryInclusionSelect();
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this.renderCutoffInput();
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this.renderBoundaryInputDivs();
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}
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getDefaultQ() {
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const tw = this.termsetting.tw;
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if (tw.q.mode == "binary") {
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const copy = JSON.parse(JSON.stringify(tw.q));
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copy.lst.forEach((bin) => {
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if (!bin.label) bin.label = get_bin_label(bin, tw.q, tw.term.valueConversion);
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bin.range = get_bin_range_equation(bin, this.tw.q, this.tw.term.valueConversion);
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});
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return copy;
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}
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const { min, max } = this.handler.density_data;
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const defaultCustomBoundary = (
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/* when no sample is annotated by this term,
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minvalue and maxvalue are both null
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setting defaultCustomBoundary to arbitrary "0" will allow existing UI to work
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but remains to be evaluated if is really okay to use 0
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*/
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!Number.isFinite(min) || !Number.isFinite(max) ? 0 : (
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max != min ? min + (max - min) / 2 : max
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)
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);
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const firstBin = {
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startunbounded: true,
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stopinclusive: false,
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stop: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
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};
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const lastBin = {
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stopunbounded: true,
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startinclusive: true,
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stopinclusive: false,
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start: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
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};
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return {
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mode: "binary",
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type: "custom-bin",
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lst: [
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{
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...firstBin,
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label: get_bin_label(firstBin, this.tw.q, this.tw.term.valueConversion),
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range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
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},
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{
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...lastBin,
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label: get_bin_label(lastBin, this.tw.q, this.tw.term.valueConversion),
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range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
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}
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//satisfies StopUnboundedBin
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],
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cutoffType: "normal"
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};
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}
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getBoundaryOpts() {
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return {
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values: [
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{
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//this.q.lst[0].map(bin => ({ x: bin.startunbounded ? bin.stop : bin.start, isDraggable: true })),
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x: this.toDisplay(this.q.lst[0].stop),
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isDraggable: true
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}
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],
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// the dragged value arrives in display units, matching what the cutoff <input> shows
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callback: (d, value) => {
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this.q.lst[0].stop = this.toStored(value);
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this.q.lst[1].start = this.toStored(value);
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this.dom.cutoffInput.property("value", value);
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this.q.lst = this.processBinaryBinInputs();
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this.dom.customBinRanges.data(this.q.lst).html((d2) => d2.range);
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this.dom.customBinLabelInput.data(this.q.lst).property("value", (d2) => d2.label);
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}
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};
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}
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getBoundaryInclusion() {
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return this.q.lst[0].startinclusive ? "startinclusive" : "stopinclusive";
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}
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renderBoundaryInclusionSelect() {
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this.dom.boundaryInclusionDiv.selectAll("*").remove();
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this.dom.boundaryInclusionDiv.append("span").style("padding", "5px").style("color", "rgb(136, 136, 136)").html("Boundary Inclusion");
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const x = '<span style="font-family:Times;font-style:italic">x</span>';
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this.dom.boundaryInclusionSelect = this.dom.boundaryInclusionDiv.append("select").style("margin-left", "10px").on("change", () => {
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this.renderBoundaryInputDivs();
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});
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this.dom.boundaryInclusionSelect.selectAll("option").data([
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{ value: "stopinclusive", html: `start < ${x} ≤ end` },
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{ value: "startinclusive", html: `start ≤ ${x} < end` }
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]).enter().append("option").property("value", (d) => d.value).property("selected", (d) => this.tw.q.lst?.[0]?.[d.value] == true).html((d) => d.html);
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}
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async renderCutoffInput() {
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this.dom.cutoff_div.append("span").style("margin-right", "5px").style("opacity", 0.5).text("Boundary value");
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const q = this.q;
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this.dom.cutoffInput = this.dom.cutoff_div.append("input").style("width", "100px").attr("type", "number").style("margin-right", "10px").attr("value", this.toDisplay(q.lst[0].stop)).on("change", () => this.renderBoundaryInputDivs());
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this.dom.cutoffPercentileCheckbox = make_one_checkbox({
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holder: this.dom.cutoff_div,
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labeltext: "Use percentile",
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checked: false,
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divstyle: { display: "inline-block" },
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callback: async (checked) => {
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this.dom.cutoffInput.property("disabled", checked == true);
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this.dom.cutoffInputPercentile.style("display", checked ? "" : "none");
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this.handlePercentileChange();
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}
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});
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this.dom.cutoffInputPercentile = this.dom.cutoff_div.append("input").attr("type", "number").attr("value", this.cutoffPercentile).style("display", "none").style("width", "100px").style("margin-right", "10px").on("change", () => this.handlePercentileChange());
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}
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async handlePercentileChange() {
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try {
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const cutoffPercentile = Number(this.dom.cutoffInputPercentile.property("value"));
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this.q.cutoffPercentile = cutoffPercentile;
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const data = await this.termsetting.vocabApi.getPercentile(
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this.tw.term,
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[cutoffPercentile],
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this.termsetting.vocabApi.state?.termfilter
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);
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this.dom.cutoffInput.property("value", this.toDisplay(data.values[0]));
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this.renderBoundaryInputDivs();
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} catch (e) {
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console.error(e);
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}
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}
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renderBoundaryInputDivs() {
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const cutoff = this.toStored(this.dom.cutoffInput.property("value"));
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this.q.lst[0].stop = cutoff;
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this.q.lst[1].start = cutoff;
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this.q.lst = this.processBinaryBinInputs();
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const grid = holder.append("div").style("display", "grid").style("grid-template-columns", "auto auto").style("column-gap", "20px").style("align-items", "center");
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grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Range");
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grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Bin label");
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});
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}
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this.dom.customBinRanges = this.dom.inputsDiv.selectAll('div[name="range"]');
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this.dom.customBinLabelInput = this.dom.inputsDiv.selectAll("input");
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this.handler.density.setBinLines(this.getBoundaryOpts());
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}
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processBinaryBinInputs() {
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const inclusive = this.dom.boundaryInclusionSelect.property("value");
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stopinclusive
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start: Number(val),
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startinclusive,
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};
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const bins = [
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{
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...firstBin,
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label: get_bin_label(firstBin, this.q, this.tw.term.valueConversion),
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range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
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},
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{
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...lastBin,
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label: get_bin_label(lastBin, this.q, this.tw.term.valueConversion),
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range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
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}
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];
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return bins;
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}
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getEditedQ(destroyDom = true) {
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const lst = this.processBinaryBinInputs();
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if (destroyDom) {
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for (const name of Object.keys(this.dom)) {
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delete this.dom[name];
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}
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}
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return {
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mode: "binary",
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type: "custom-bin",
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lst
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};
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}
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async undoEdits() {
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this.q = this.getDefaultQ();
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await this.handler.density.setBinLines(this.getBoundaryOpts());
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this.dom.inputsDiv.selectAll("*").remove();
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this.renderBoundaryInclusionSelect();
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this.renderCutoffInput();
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this.renderBoundaryInputDivs();
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}
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};
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export {
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NumBinaryEditor
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};
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//# sourceMappingURL=NumBinaryEditor-BQVR2RDS.js.map
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@@ -1,312 +0,0 @@
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import {
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agedx
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} from "./chunk-32AI7I4C.js";
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import {
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NumericHandler
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} from "./chunk-IP2PLKC3.js";
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termjson
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} from "./chunk-CWWE77DH.js";
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sleep
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} from "./chunk-WA3C3A2M.js";
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require_tape
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} from "./chunk-PJYCTAMC.js";
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TwRouter
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import "./chunk-5R63Q5KH.js";
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import {
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select_default
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|
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} from "./chunk-I6Y4O3RR.js";
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import "./chunk-Q5RDQNIT.js";
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import "./chunk-DQC5FFGV.js";
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import {
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|
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__toESM
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|
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} from "./chunk-HS5PO5ZQ.js";
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|
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|
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// termsetting/handlers/test/NumBinaryEditor.unit.spec.ts
|
|
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|
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var import_tape = __toESM(require_tape(), 1);
|
|
52
|
-
var pct50 = 6.3475409836;
|
|
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|
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var pct70 = 1000.36986301355;
|
|
54
|
-
var DAY_TO_YEAR = 1 / 365.25;
|
|
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|
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function getConvertedTerm() {
|
|
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|
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const term = JSON.parse(JSON.stringify(termjson.agedx));
|
|
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|
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term.valueConversion = { fromUnit: "day", toUnit: "year", scaleFactor: DAY_TO_YEAR };
|
|
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|
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return term;
|
|
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|
-
}
|
|
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|
-
async function getNumericHandler(opts = {}) {
|
|
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|
-
const term = opts.term || JSON.parse(JSON.stringify(termjson.agedx));
|
|
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|
-
const rawTw = {
|
|
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|
-
term,
|
|
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|
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q: {
|
|
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|
-
mode: "binary"
|
|
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|
-
}
|
|
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|
-
};
|
|
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|
-
let handler = {};
|
|
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|
-
const vocabApi = {
|
|
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|
-
state: {
|
|
71
|
-
termfilter: { filter: { type: "tvslst", in: "", lst: [] } }
|
|
72
|
-
},
|
|
73
|
-
getViolinBox() {
|
|
74
|
-
return agedx;
|
|
75
|
-
},
|
|
76
|
-
getPercentile() {
|
|
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|
-
return {
|
|
78
|
-
values: handler?.editHandler?.q.cutoffPercentile === 70 ? [pct70] : [pct50]
|
|
79
|
-
};
|
|
80
|
-
}
|
|
81
|
-
};
|
|
82
|
-
const tw = await TwRouter.initRaw(rawTw, { vocabApi });
|
|
83
|
-
handler = new NumericHandler({
|
|
84
|
-
termsetting: {
|
|
85
|
-
tw,
|
|
86
|
-
term: rawTw.term,
|
|
87
|
-
q: rawTw.q,
|
|
88
|
-
opts: {
|
|
89
|
-
numericEditMenuVersion: ["binary"],
|
|
90
|
-
usecase: opts.usecase
|
|
91
|
-
},
|
|
92
|
-
api: {
|
|
93
|
-
runCallback() {
|
|
94
|
-
}
|
|
95
|
-
},
|
|
96
|
-
dom: {
|
|
97
|
-
tip: {
|
|
98
|
-
hide() {
|
|
99
|
-
}
|
|
100
|
-
}
|
|
101
|
-
},
|
|
102
|
-
vocabApi
|
|
103
|
-
}
|
|
104
|
-
});
|
|
105
|
-
handler.density_data = { min: 0, max: 100 };
|
|
106
|
-
const holder = select_default("body").append("div").style("position", "relative").style("width", "fit-content").style("margin", "20px").style("padding", "5px").style("border", "1px solid #000");
|
|
107
|
-
handler.dom.editDiv = holder;
|
|
108
|
-
await handler.setEditHandler(handler.tabs[0]);
|
|
109
|
-
return {
|
|
110
|
-
rawTw,
|
|
111
|
-
tw,
|
|
112
|
-
handler,
|
|
113
|
-
editHandler: handler.editHandler,
|
|
114
|
-
holder,
|
|
115
|
-
destroy: () => {
|
|
116
|
-
if ("destroy" in handler.editHandler) handler.editHandler.destroy();
|
|
117
|
-
if (typeof handler.destroy == "function") handler.destroy();
|
|
118
|
-
holder.remove();
|
|
119
|
-
}
|
|
120
|
-
};
|
|
121
|
-
}
|
|
122
|
-
(0, import_tape.default)("\n", (test) => {
|
|
123
|
-
test.comment("-***- NumBinaryEditor.unit.spec -***-");
|
|
124
|
-
test.end();
|
|
125
|
-
});
|
|
126
|
-
(0, import_tape.default)("handler methods", async (test) => {
|
|
127
|
-
const { editHandler, destroy } = await getNumericHandler();
|
|
128
|
-
editHandler.termsetting.tw.q = { mode: "continuous" };
|
|
129
|
-
test.deepEqual(
|
|
130
|
-
await editHandler.getDefaultQ(),
|
|
131
|
-
{
|
|
132
|
-
mode: "binary",
|
|
133
|
-
type: "custom-bin",
|
|
134
|
-
lst: [
|
|
135
|
-
{
|
|
136
|
-
startunbounded: true,
|
|
137
|
-
startinclusive: false,
|
|
138
|
-
stopinclusive: false,
|
|
139
|
-
stop: 50,
|
|
140
|
-
label: "<50",
|
|
141
|
-
range: '<span style="font-family:Times;font-style:italic;">x</span> <50'
|
|
142
|
-
},
|
|
143
|
-
{
|
|
144
|
-
stopunbounded: true,
|
|
145
|
-
startinclusive: true,
|
|
146
|
-
stopinclusive: false,
|
|
147
|
-
start: 50,
|
|
148
|
-
label: "\u226550",
|
|
149
|
-
range: '<span style="font-family:Times;font-style:italic;">x</span> \u226550'
|
|
150
|
-
}
|
|
151
|
-
],
|
|
152
|
-
cutoffType: "normal"
|
|
153
|
-
},
|
|
154
|
-
"should give the expected defaultQ"
|
|
155
|
-
);
|
|
156
|
-
if (test._ok) destroy();
|
|
157
|
-
test.end();
|
|
158
|
-
});
|
|
159
|
-
(0, import_tape.default)("initial rendered UI", async (test) => {
|
|
160
|
-
const { editHandler, holder, destroy } = await getNumericHandler();
|
|
161
|
-
await editHandler.showEditMenu(holder);
|
|
162
|
-
test.equal(editHandler.dom?.density_div.selectAll("svg").size(), 1, `should render a density plot svg`);
|
|
163
|
-
test.equal(
|
|
164
|
-
editHandler.dom.boundaryInclusionDiv.selectAll("option").size(),
|
|
165
|
-
2,
|
|
166
|
-
`should render a boundary inclusion dropdown with 2 options`
|
|
167
|
-
);
|
|
168
|
-
test.equal(
|
|
169
|
-
editHandler.dom.cutoff_div.selectAll(`input[type='number']`).size(),
|
|
170
|
-
2,
|
|
171
|
-
`should render cutoff inputs, absolute and in percentile`
|
|
172
|
-
);
|
|
173
|
-
test.equal(
|
|
174
|
-
editHandler.dom.cutoff_div.selectAll(`input[type='checkbox']`).size(),
|
|
175
|
-
1,
|
|
176
|
-
`should render cutoff option for percentile`
|
|
177
|
-
);
|
|
178
|
-
test.equal(editHandler.dom.cutoffInputPercentile.style("display"), "none", `should hide percentile input by default`);
|
|
179
|
-
editHandler.dom.cutoffPercentileCheckbox.property("checked", true);
|
|
180
|
-
editHandler.dom.cutoffPercentileCheckbox.node().dispatchEvent(new Event("input", { bubbles: true }));
|
|
181
|
-
await sleep(0);
|
|
182
|
-
test.equal(
|
|
183
|
-
editHandler.dom.cutoffInputPercentile.style("display"),
|
|
184
|
-
"inline-block",
|
|
185
|
-
`should show the percentile input when the checkbox is checked`
|
|
186
|
-
);
|
|
187
|
-
test.equal(
|
|
188
|
-
editHandler.dom.cutoffInputPercentile.property("value"),
|
|
189
|
-
"50",
|
|
190
|
-
`should default to 50% percentile input value`
|
|
191
|
-
);
|
|
192
|
-
const newCutoff = 6.3475409836;
|
|
193
|
-
const ranges = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
|
|
194
|
-
test.equal(ranges[0].innerText, `x \u2264${newCutoff}`, `should render the expected first bin range`);
|
|
195
|
-
test.equal(ranges[1].innerText, `x >${newCutoff}`, `should render the expected last bin range`);
|
|
196
|
-
const binInputs = editHandler.dom.inputsDiv.node().querySelectorAll("input");
|
|
197
|
-
test.equal(binInputs[0].value, `\u2264${newCutoff}`, `should render the expected first bin input value`);
|
|
198
|
-
test.equal(binInputs[1].value, `>${newCutoff}`, `should render the expected last bin input value`);
|
|
199
|
-
if (test._ok) destroy();
|
|
200
|
-
test.end();
|
|
201
|
-
});
|
|
202
|
-
(0, import_tape.default)("cutoff interactivity", async (test) => {
|
|
203
|
-
const { editHandler, holder, destroy } = await getNumericHandler();
|
|
204
|
-
await editHandler.showEditMenu(holder);
|
|
205
|
-
const lines = editHandler.handler.density.dom.binsize_g.selectAll("line");
|
|
206
|
-
test.equal(lines.size(), 1, `should render only one draggable line in the density plot`);
|
|
207
|
-
const line = lines.node();
|
|
208
|
-
const x1 = Number(line.getAttribute("x1"));
|
|
209
|
-
editHandler.dom.boundaryInclusionSelect.property("value", "startinclusive");
|
|
210
|
-
editHandler.dom.boundaryInclusionSelect.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
211
|
-
const newCutoff = 500;
|
|
212
|
-
editHandler.dom.cutoffInput.property("value", newCutoff);
|
|
213
|
-
editHandler.dom.cutoffInput.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
214
|
-
const ranges = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
|
|
215
|
-
test.equal(ranges[0].innerText, `x <${newCutoff}`, `should render the expected first bin range`);
|
|
216
|
-
test.equal(ranges[1].innerText, `x \u2265${newCutoff}`, `should render the expected last bin range`);
|
|
217
|
-
const binInputs = editHandler.dom.inputsDiv.node().querySelectorAll("input");
|
|
218
|
-
test.equal(binInputs[0].value, `<${newCutoff}`, `should render the expected first bin input value`);
|
|
219
|
-
test.equal(binInputs[1].value, `\u2265${newCutoff}`, `should render the expected last bin input value`);
|
|
220
|
-
const line2 = editHandler.handler.density.dom.binsize_g.select("line").node();
|
|
221
|
-
test.true(x1 <= Number(line2.getAttribute("x1")), "should trigger the density line to move to the right");
|
|
222
|
-
editHandler.dom.cutoffPercentileCheckbox.property("checked", true);
|
|
223
|
-
editHandler.dom.cutoffPercentileCheckbox.node().dispatchEvent(new Event("input", { bubbles: true }));
|
|
224
|
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editHandler.dom.cutoffInputPercentile.property("value", 70);
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225
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editHandler.dom.cutoffInputPercentile.node().dispatchEvent(new Event("change", { bubbles: true }));
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226
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await sleep(0);
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{
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|
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const lines2 = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
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229
|
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test.deepEqual(
|
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|
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lines2.map((l) => l.getAttribute("x1")),
|
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231
|
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["116"],
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232
|
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`should re-render a draggable line in the updated x-position`
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|
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);
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|
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const ranges2 = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
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|
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test.equal(ranges2[0].innerText, `x <${pct70}`, `should render the expected first bin range`);
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|
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test.equal(ranges2[1].innerText, `x \u2265${pct70}`, `should render the expected last bin range`);
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|
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const binInputs2 = editHandler.dom.inputsDiv.node().querySelectorAll("input");
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|
-
test.equal(binInputs2[0].value, `<${pct70}`, `should render the expected first bin input value`);
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239
|
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test.equal(binInputs2[1].value, `\u2265${pct70}`, `should render the expected last bin input value`);
|
|
240
|
-
}
|
|
241
|
-
test.deepEqual(
|
|
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|
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editHandler.getEditedQ(false),
|
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|
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{
|
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244
|
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mode: "binary",
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|
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type: "custom-bin",
|
|
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|
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lst: [
|
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|
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{
|
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248
|
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startunbounded: true,
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249
|
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stop: pct70,
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250
|
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startinclusive: false,
|
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|
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stopinclusive: false,
|
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252
|
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label: `<${pct70}`,
|
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253
|
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range: `<span style="font-family:Times;font-style:italic;">x</span> <${pct70}`
|
|
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|
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},
|
|
255
|
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{
|
|
256
|
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start: pct70,
|
|
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|
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startinclusive: true,
|
|
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|
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stopinclusive: false,
|
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|
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stopunbounded: true,
|
|
260
|
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label: `\u2265${pct70}`,
|
|
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|
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range: `<span style="font-family:Times;font-style:italic;">x</span> \u2265${pct70}`
|
|
262
|
-
}
|
|
263
|
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]
|
|
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|
-
},
|
|
265
|
-
`should give the expected edited q object`
|
|
266
|
-
);
|
|
267
|
-
const density_div = editHandler.dom.density_div.node();
|
|
268
|
-
await editHandler.showEditMenu(holder);
|
|
269
|
-
test.equal(
|
|
270
|
-
density_div,
|
|
271
|
-
editHandler.dom.density_div.node(),
|
|
272
|
-
`should not re-render the menu when the holder has not changed`
|
|
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|
-
);
|
|
274
|
-
await editHandler.undoEdits();
|
|
275
|
-
await sleep(0);
|
|
276
|
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{
|
|
277
|
-
const lines2 = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
|
|
278
|
-
test.deepEqual(
|
|
279
|
-
lines2.map((l) => l.getAttribute("x1")),
|
|
280
|
-
["11"],
|
|
281
|
-
`should render a draggable line in the expected x-position`
|
|
282
|
-
);
|
|
283
|
-
}
|
|
284
|
-
if (test._ok) destroy();
|
|
285
|
-
test.end();
|
|
286
|
-
});
|
|
287
|
-
(0, import_tape.default)("converted term", async (test) => {
|
|
288
|
-
const { editHandler, holder, destroy } = await getNumericHandler({ term: getConvertedTerm() });
|
|
289
|
-
await editHandler.showEditMenu(holder);
|
|
290
|
-
test.equal(
|
|
291
|
-
editHandler.dom.cutoffInput.property("value"),
|
|
292
|
-
String(Number((pct50 * DAY_TO_YEAR).toFixed(2))),
|
|
293
|
-
`should fill the cutoff input in years`
|
|
294
|
-
);
|
|
295
|
-
editHandler.dom.cutoffInput.property("value", 5);
|
|
296
|
-
editHandler.dom.cutoffInput.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
297
|
-
const editedQ = editHandler.getEditedQ(false);
|
|
298
|
-
test.deepEqual(
|
|
299
|
-
[editedQ.lst[0].stop, editedQ.lst[1].start],
|
|
300
|
-
[1826.25, 1826.25],
|
|
301
|
-
`should store a cutoff typed in years as days`
|
|
302
|
-
);
|
|
303
|
-
test.deepEqual(
|
|
304
|
-
editedQ.lst.map((bin) => bin.label),
|
|
305
|
-
// the default boundary inclusion is stopinclusive
|
|
306
|
-
["\u22645y", ">5y"],
|
|
307
|
-
`should label the two bins in years`
|
|
308
|
-
);
|
|
309
|
-
if (test._ok) destroy();
|
|
310
|
-
test.end();
|
|
311
|
-
});
|
|
312
|
-
//# sourceMappingURL=NumBinaryEditor.unit.spec-FAOFWPDH.js.map
|
|
@@ -1,105 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
make_one_checkbox
|
|
3
|
-
} from "./chunk-QI6X4V43.js";
|
|
4
|
-
import "./chunk-HJ6L54YS.js";
|
|
5
|
-
import {
|
|
6
|
-
HandlerBase
|
|
7
|
-
} from "./chunk-KV4W2ACA.js";
|
|
8
|
-
import "./chunk-7HPICVA4.js";
|
|
9
|
-
import "./chunk-7XZA2XR2.js";
|
|
10
|
-
import "./chunk-DD3DWHUY.js";
|
|
11
|
-
import "./chunk-EEB5VE2A.js";
|
|
12
|
-
import "./chunk-3CIL7KH7.js";
|
|
13
|
-
import "./chunk-T4XPCSLP.js";
|
|
14
|
-
import "./chunk-YU7CVG4B.js";
|
|
15
|
-
import "./chunk-HH5JKOE6.js";
|
|
16
|
-
import "./chunk-RU2UHH7M.js";
|
|
17
|
-
import "./chunk-57Z4VYLM.js";
|
|
18
|
-
import "./chunk-HBNB5TRH.js";
|
|
19
|
-
import "./chunk-PF4DSFDR.js";
|
|
20
|
-
import "./chunk-7X6NF7NI.js";
|
|
21
|
-
import "./chunk-W5J3LTYS.js";
|
|
22
|
-
import "./chunk-Z2ZITHT4.js";
|
|
23
|
-
import "./chunk-4OLM3KSB.js";
|
|
24
|
-
import "./chunk-6XKAOSQE.js";
|
|
25
|
-
import "./chunk-TLT4YIG3.js";
|
|
26
|
-
import "./chunk-5R63Q5KH.js";
|
|
27
|
-
import "./chunk-I6Y4O3RR.js";
|
|
28
|
-
import "./chunk-Q5RDQNIT.js";
|
|
29
|
-
import "./chunk-DQC5FFGV.js";
|
|
30
|
-
import "./chunk-HS5PO5ZQ.js";
|
|
31
|
-
|
|
32
|
-
// termsetting/handlers/NumContEditor.ts
|
|
33
|
-
var NumContEditor = class extends HandlerBase {
|
|
34
|
-
constructor(opts, handler) {
|
|
35
|
-
super(opts);
|
|
36
|
-
this.dom = {};
|
|
37
|
-
this.termsetting = opts.termsetting;
|
|
38
|
-
this.tw = opts.termsetting.tw;
|
|
39
|
-
this.handler = handler;
|
|
40
|
-
this.q = this.setDefaultQ();
|
|
41
|
-
}
|
|
42
|
-
setDefaultQ() {
|
|
43
|
-
if (this.tw.q.mode == "continuous") return JSON.parse(JSON.stringify(this.tw.q));
|
|
44
|
-
return { mode: "continuous" };
|
|
45
|
-
}
|
|
46
|
-
async showEditMenu(div) {
|
|
47
|
-
this.tw = this.handler.tw;
|
|
48
|
-
this.q = this.setDefaultQ();
|
|
49
|
-
if (this.dom.inputsDiv) {
|
|
50
|
-
if (div.node().contains(this.dom.inputsDiv.node())) return;
|
|
51
|
-
else delete this.dom.inputsDiv;
|
|
52
|
-
}
|
|
53
|
-
this.dom.density_div = div.append("div");
|
|
54
|
-
await this.handler.density.showViolin(this.dom.density_div);
|
|
55
|
-
this.dom.inputsDiv = div.append("div");
|
|
56
|
-
this.mayShowValueconversionMsg(this.dom.inputsDiv);
|
|
57
|
-
if (this.termsetting.opts.usecase?.target == "matrix") {
|
|
58
|
-
this.dom.convert2ZCheckbox = await make_one_checkbox({
|
|
59
|
-
holder: this.dom.inputsDiv.append("div"),
|
|
60
|
-
labeltext: "Convert to Z-score",
|
|
61
|
-
checked: this.q.convert2ZScore ? true : false,
|
|
62
|
-
divstyle: { display: "inline-block", padding: "3px 10px" },
|
|
63
|
-
callback: (checked) => {
|
|
64
|
-
this.q.convert2ZScore = checked;
|
|
65
|
-
if (checked) {
|
|
66
|
-
this.dom.scaleSelect.property("value", 1);
|
|
67
|
-
delete this.q.scale;
|
|
68
|
-
}
|
|
69
|
-
}
|
|
70
|
-
});
|
|
71
|
-
}
|
|
72
|
-
const selectDiv = this.dom.inputsDiv.append("div").style("display", "inline-block");
|
|
73
|
-
selectDiv.append("div").style("display", "inline-block").style("padding", "3px 10px").html("Scale values");
|
|
74
|
-
this.dom.scaleSelect = selectDiv.append("select").on("change", (event) => {
|
|
75
|
-
if (event.target.value == "1") delete this.q.scale;
|
|
76
|
-
else {
|
|
77
|
-
if (this.dom.convert2ZCheckbox) this.dom.convert2ZCheckbox.property("checked", false);
|
|
78
|
-
this.q.scale = Number(event.target.value);
|
|
79
|
-
}
|
|
80
|
-
});
|
|
81
|
-
this.dom.scaleSelect.selectAll("option").data([
|
|
82
|
-
{ html: "No Scaling", value: 1 },
|
|
83
|
-
{ html: "Per 10", value: 10 },
|
|
84
|
-
{ html: "Per 100", value: 100 },
|
|
85
|
-
{ html: "Per 1000", value: 1e3 }
|
|
86
|
-
]).enter().append("option").attr("value", (d) => d.value).html((d) => d.html).property("selected", (d) => "scale" in this.q && d.value == this.q.scale);
|
|
87
|
-
}
|
|
88
|
-
getEditedQ() {
|
|
89
|
-
const scaleValue = this.dom.scaleSelect.property("value");
|
|
90
|
-
if (scaleValue == "1") delete this.q.scale;
|
|
91
|
-
else this.q.scale = Number(scaleValue);
|
|
92
|
-
if (this.dom.convert2ZCheckbox) this.q.convert2ZScore = this.dom.convert2ZCheckbox.property("checked");
|
|
93
|
-
return this.q;
|
|
94
|
-
}
|
|
95
|
-
destroy() {
|
|
96
|
-
for (const name of Object.keys(this.dom)) {
|
|
97
|
-
this.dom[name].remove();
|
|
98
|
-
delete this.dom[name];
|
|
99
|
-
}
|
|
100
|
-
}
|
|
101
|
-
};
|
|
102
|
-
export {
|
|
103
|
-
NumContEditor
|
|
104
|
-
};
|
|
105
|
-
//# sourceMappingURL=NumContEditor-6T6XFLAM.js.map
|