@sjcrh/proteinpaint-client 2.211.0 → 2.212.0

package/dist/chunk-YCORHJ64.js

@@ -1,240 +0,0 @@
-import {
-  make_radios
-} from "./chunk-K7HFOAR7.js";
-import {
-  initBinConfig
-} from "./chunk-GP4VLNMZ.js";
-import {
-  toStoredUnit,
-  toUserUnit
-} from "./chunk-W5J3LTYS.js";
-import {
-  format
-} from "./chunk-4OLM3KSB.js";
-
-// termsetting/handlers/NumRegularBinEditor.ts
-var NumRegularBinEditor = class {
-  constructor(editHandler) {
-    this.dom = {};
-    this.editHandler = editHandler;
-    this.opts = editHandler.opts;
-    this.tw = editHandler.tw;
-    this.termsetting = editHandler.termsetting;
-  }
-  /* q holds bin boundaries in the unit the term's values are stored in, while the <input>s and the
-  density plot show them in the term's user-facing unit. toDisplay()/toStored() cross that boundary;
-  both are identity functions unless the term declares valueConversion{} */
-  toDisplay(v) {
-    return toUserUnit(v, this.tw.term);
-  }
-  toStored(v) {
-    return toStoredUnit(v, this.tw.term);
-  }
-  render(div) {
-    this.tw = this.editHandler.tw;
-    const isRemounting = !!this.dom.binsTable && this.editHandler.dom.binsDiv?.node().contains(this.dom.binsTable.node());
-    if (!isRemounting) this.q = this.getDefaultQ();
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-    if (isRemounting) return;
-    if (this.dom.binsTable) {
-      this.dom.binsTable.remove();
-      delete this.dom.binsTable;
-    }
-    const binsTable = div.append("table");
-    this.dom.binsTable = binsTable;
-    this.renderBinSizeInput(binsTable.append("tr"));
-    this.renderFirstBinInput(binsTable.append("tr"));
-    this.renderLastBinInputs(binsTable.append("tr"));
-  }
-  getDefaultQ() {
-    if (this.tw.q.type == "regular-bin") return JSON.parse(JSON.stringify(this.tw.q));
-    const t = this.tw.term;
-    const defaultQ = this.termsetting.opts.use_bins_less && t.bins?.less || t.bins?.default;
-    if (defaultQ) return JSON.parse(JSON.stringify(defaultQ));
-    const binConfig = initBinConfig(this.editHandler.handler.density_data);
-    return typeof binConfig == "string" ? JSON.parse(binConfig) : binConfig;
-  }
-  renderBinSizeInput(tr) {
-    const handler = this.editHandler.handler;
-    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("Bin Size");
-    const { min, max } = handler.density_data;
-    const q = this.q;
-    const origBinSize = this.toDisplay(q.bin_size);
-    this.dom.bin_size_input = tr.append("td").append("input").attr("type", "number").attr(
-      "value",
-      handler.density.scaleFactor == 1 && "rounding" in q ? format(q.rounding || ".0f")(q.bin_size) : origBinSize
-    ).attr("data-testid", "sjpp-num-reg-bin-editor-size").style("margin-left", "15px").style("width", "100px").style("color", () => q.bin_size > Math.abs(max - min) ? "red" : "").on("change", (event) => {
-      const newValue = this.toStored(Number(event.target.value));
-      if (newValue <= 0) {
-        window.alert("Please enter non-negative bin size.");
-        event.target.value = origBinSize;
-        return;
-      }
-      if ((max - min) / newValue > 100) {
-        window.alert("Bin size too small. Try setting a bigger value.");
-        event.target.value = origBinSize;
-        return;
-      }
-      q.bin_size = newValue;
-      this.dom.bin_size_input.style(
-        "color",
-        q.bin_size > max - min ? "red" : this.toDisplay(newValue) != origBinSize ? "green" : ""
-      );
-      handler.density.setBinLines(this.getBoundaryOpts());
-    });
-  }
-  renderFirstBinInput(tr) {
-    const handler = this.editHandler.handler;
-    const q = this.q;
-    if (!q.first_bin) throw "missing q.first_bin";
-    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("First Bin Stop");
-    const { min, max } = handler.density_data;
-    const origValue = this.toDisplay(q.first_bin.stop);
-    this.dom.first_stop_input = tr.append("td").append("input").attr("type", "number").property("value", origValue).style("width", "100px").style("margin-left", "15px").on("change", (event) => {
-      const newValue = this.toStored(Number(event.target.value));
-      if (Number(event.target.value) < this.toDisplay(min) || Number(event.target.value) > this.toDisplay(max)) {
-        window.alert("First bin stop value out of bound.");
-        event.target.value = origValue;
-        return;
-      }
-      this.q.first_bin.stop = newValue;
-      handler.density.setBinLines(this.getBoundaryOpts());
-    });
-    tr.append("td").append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by left-most red line. Drag to change.");
-  }
-  renderLastBinInputs(tr) {
-    const handler = this.editHandler.handler;
-    const q = this.q;
-    const isAuto = !q.last_bin || !Number.isFinite(q.last_bin.start);
-    tr.append("td").style("padding-top", "4px").style("opacity", 0.5).style("vertical-align", "top").text("Last Bin Start");
-    const td1 = tr.append("td").style("padding-left", "15px").style("vertical-align", "top");
-    const radio_div = td1.append("div");
-    const radios = make_radios({
-      holder: radio_div,
-      options: [
-        { label: "Automatic", value: "auto", checked: isAuto },
-        { label: "Fixed", value: "fixed", checked: !isAuto }
-      ],
-      callback: (v) => {
-        if (v == "auto") {
-          delete q.last_bin;
-          edit_div.style("display", "none");
-          handler.density.setBinLines(this.getBoundaryOpts());
-          return;
-        }
-        edit_div.style("display", "inline-block");
-        if (this.dom.last_start_input.property("value") == "") {
-          this.dom.last_start_input.property(
-            "value",
-            this.toDisplay(this.tw.q.last_bin?.start || handler.density_data.max)
-          );
-        }
-        this.setLastBinStart();
-      }
-    });
-    this.dom.fixed_radio = radios.inputs.filter((_, i) => i === 1);
-    const edit_div = tr.append("td").append("div").style("display", isAuto ? "none" : "inline-block");
-    this.dom.last_start_input = edit_div.append("input").attr("type", "number").property("value", Number.isFinite(q.last_bin?.start) ? this.toDisplay(q.last_bin.start) : "").style("width", "100px").on("change", () => this.setLastBinStart());
-    edit_div.append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by right-most red line. Drag to change.");
-  }
-  setLastBinStart() {
-    const q = this.q;
-    const { max } = this.editHandler.handler.density_data;
-    const strInput = this.dom.last_start_input.property("value");
-    if (strInput === "") return;
-    const inputValue = this.toStored(Number(strInput));
-    if (q.first_bin && Number(strInput) <= this.toDisplay(q.first_bin.stop)) {
-      window.alert("Last bin start cannot be smaller than first bin stop.");
-      this.dom.last_start_input.property("value", this.toDisplay(max));
-      return;
-    }
-    if (Number(strInput) > this.toDisplay(max)) {
-      window.alert("Last bin start value out of bound.");
-      this.dom.last_start_input.property("value", this.toDisplay(max));
-      return;
-    }
-    if (q.last_bin) q.last_bin.start = inputValue;
-    else
-      q.last_bin = {
-        start: inputValue,
-        stopunbounded: true,
-        stopinclusive: false
-      };
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-  getBoundaryOpts() {
-    const { min, max } = this.editHandler.handler.density_data;
-    const binLinesStop = this.q.last_bin?.start ?? max + Math.abs(this.q.first_bin.stop) - Math.min(min, 0);
-    const boundaryValues = [];
-    for (let i = this.q.first_bin.stop; i <= binLinesStop; i = i + this.q.bin_size) {
-      if (this.q.last_bin?.start === i) break;
-      if (i > binLinesStop) boundaryValues[boundaryValues.length - 1].isLastVisibleLine = true;
-      const isDraggable = i === this.q.first_bin.stop || i === this.q.bin_size - 1;
-      boundaryValues.push({ x: this.toDisplay(i), isDraggable, movesWithLineIndex: !isDraggable ? 0 : -1 });
-    }
-    if (this.q.last_bin) {
-      boundaryValues.push({
-        x: this.toDisplay(this.q.last_bin.start),
-        isDraggable: true,
-        isLastVisibleLine: true,
-        movesWithLineIndex: -1
-      });
-    }
-    return {
-      values: boundaryValues,
-      // the dragged value arrives in display units, matching what the <input>s show
-      callback: (d, value) => {
-        if (d.index === 0) {
-          this.dom.first_stop_input.property("value", value);
-          this.q.first_bin.stop = this.toStored(value);
-        } else {
-          this.dom.last_start_input.property("value", value);
-          if (this.q.last_bin) this.q.last_bin.start = this.toStored(value);
-        }
-      }
-    };
-  }
-  getEditedQ(destroyDom = true) {
-    const bin_size = this.dom.bin_size_input.property("value");
-    const config = {
-      mode: "discrete",
-      type: "regular-bin",
-      startinclusive: this.editHandler.boundaryInclusion == "startinclusive",
-      stopinclusive: this.editHandler.boundaryInclusion == "stopinclusive",
-      bin_size: this.toStored(Number(bin_size)),
-      first_bin: {
-        startunbounded: true,
-        stop: this.toStored(Number(this.dom.first_stop_input.property("value")))
-      },
-      /* rounding formats the stored bin size, so it cannot be derived from the decimals of a
-      converted input. a converted term labels its bins through valueConversion instead */
-      rounding: this.editHandler.handler.density.scaleFactor != 1 ? ".0f" : bin_size.includes(".") && !bin_size.endsWith(".") ? `.${bin_size.split(".")[1].length}f` : ".0f"
-    };
-    if (this.dom.fixed_radio.property("checked")) {
-      config.last_bin = {
-        start: this.toStored(Number(this.dom.last_start_input.property("value"))),
-        stopunbounded: true
-      };
-    }
-    if (destroyDom) {
-      for (const name of Object.keys(this.dom)) {
-        this.dom[name].remove();
-        delete this.dom[name];
-      }
-    }
-    return config;
-  }
-  undoEdits() {
-    this.q = this.getDefaultQ();
-    this.dom.binsTable.selectAll("*").remove();
-    this.renderBinSizeInput(this.dom.binsTable.append("tr"));
-    this.renderFirstBinInput(this.dom.binsTable.append("tr"));
-    this.renderLastBinInputs(this.dom.binsTable.append("tr"));
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-};
-
-export {
-  NumRegularBinEditor
-};
-//# sourceMappingURL=chunk-YCORHJ64.js.map

package/dist/chunk-YOBTHZVU.js

@@ -1,80 +0,0 @@
-import {
-  addGeneSearchbox,
-  getGEunit,
-  getSampleTypeLabelByTerms,
-  getSelectedSampleTypes,
-  getSelectedSampleTypesByTerms,
-  renderSampleTypeSelect,
-  renderSampleTypesByTermsSelect,
-  table2col
-} from "./chunk-K7HFOAR7.js";
-import {
-  Menu
-} from "./chunk-7XZA2XR2.js";
-import {
-  TermTypes
-} from "./chunk-57Z4VYLM.js";
-
-// termdb/handlers/geneExpression.ts
-var SearchHandler = class {
-  init(opts) {
-    this.callback = opts.callback;
-    this.app = opts.app;
-    this.dom = {};
-    const holder = opts.holder.append("div").style("padding", "10px 0px");
-    this.dom.sampleTypeDiv = holder.append("div");
-    this.mayRenderSampleTypeSelect();
-    const geneSearch = addGeneSearchbox({
-      tip: new Menu({ padding: "0px" }),
-      genome: opts.genomeObj,
-      row: holder,
-      searchOnly: "gene",
-      callback: () => this.selectGene(geneSearch)
-    });
-    holder.select(".sja_genesearchinput").style("margin", "0px");
-  }
-  mayRenderSampleTypeSelect() {
-    this.dom.sampleTypeDiv.selectAll("*").remove();
-    this.querySampleTypes = this.app.vocabApi.termdbConfig?.queries.geneExpression.sampleTypes;
-    this.querySampleTypesByTerms = this.app.vocabApi.termdbConfig?.queries.geneExpression.sampleTypesByTerms;
-    if (Array.isArray(this.querySampleTypes) && this.querySampleTypes.length >= 2 || this.querySampleTypesByTerms) {
-      const table = table2col({ holder: this.dom.sampleTypeDiv, margin: "0px 0px 15px 0px" });
-      const [td1, td2] = table.addRow();
-      td1.text("Sample Type");
-      td2.style("padding-left", "10px");
-      if (this.querySampleTypesByTerms) {
-        this.sampleTypeSelect = renderSampleTypesByTermsSelect(
-          td2,
-          this.querySampleTypesByTerms,
-          this.app.vocabApi.termdbConfig
-        );
-      } else {
-        this.sampleTypeSelect = renderSampleTypeSelect(td2, this.querySampleTypes, this.app.vocabApi.termdbConfig);
-      }
-    }
-  }
-  async selectGene(geneSearch) {
-    const gene = geneSearch?.geneSymbol;
-    if (!gene) throw new Error("No gene selected");
-    const sampleTypes = this.querySampleTypesByTerms ? getSelectedSampleTypesByTerms(this.sampleTypeSelect, this.querySampleTypesByTerms) : getSelectedSampleTypes(this.sampleTypeSelect) || this.querySampleTypes;
-    if (this.sampleTypeSelect && !sampleTypes?.length) {
-      return;
-    }
-    const unit = getGEunit(this.app.vocabApi);
-    const name = `${gene} ${unit}`;
-    const term = { gene, name, type: TermTypes.GENE_EXPRESSION, sampleTypes };
-    if (this.querySampleTypesByTerms) {
-      const sampleTypeLabel = getSampleTypeLabelByTerms(this.sampleTypeSelect);
-      if (sampleTypeLabel) {
-        term.sampleTypeLabel = sampleTypeLabel;
-        term.name += ` (${sampleTypeLabel})`;
-      }
-    }
-    this.callback(term);
-  }
-};
-
-export {
-  SearchHandler
-};
-//# sourceMappingURL=chunk-YOBTHZVU.js.map

package/dist/chunk-ZTT6ZHU5.js

@@ -1,217 +0,0 @@
-import {
-  dofetch,
-  dofetch2
-} from "./chunk-GP4VLNMZ.js";
-import {
-  contigNameNoChr2
-} from "./chunk-57Z4VYLM.js";
-
-// tracks/hic/data/parseData.ts
-async function hicParseFile(hic, debugmode, errList = []) {
-  if (debugmode) window["hic"] = hic;
-  if (hic.tklst) {
-    const lst = [];
-    for (const t of hic.tklst) {
-      if (!t.type) {
-        errList.push("type missing from one of the tracks accompanying HiC");
-      } else {
-        t.iscustom = true;
-        lst.push(t);
-      }
-    }
-    if (lst.length) {
-      hic.tklst = lst;
-    } else {
-      delete hic.tklst;
-    }
-  }
-  if (hic.enzyme) {
-    if (hic.genome.hicenzymefragment) {
-      let frag = null;
-      for (const f of hic.genome.hicenzymefragment) {
-        if (f.enzyme == hic.enzyme) {
-          frag = f;
-          break;
-        }
-      }
-      if (frag) {
-        hic.enzymefile = frag.file;
-      } else {
-        errList.push("unknown enzyme: " + hic.enzyme);
-        delete hic.enzyme;
-      }
-    } else {
-      errList.push("no enzyme fragment information available for this genome");
-      delete hic.enzyme;
-    }
-  }
-  try {
-    if (hic.sv && hic.sv.file) {
-      const re = await dofetch(hic.hostURL + "/textfile", {
-        method: "POST",
-        body: JSON.stringify({ file: hic.sv.file, jwt: hic.jwt })
-      });
-      const data2 = re.json();
-      const [err2, header, items] = parseSV(data2.text);
-      if (err2) throw { message: "Error parsing SV: " + err2 };
-      hic.sv.header = header;
-      hic.sv.items = items;
-    }
-    const data = await dofetch2("hicstat?" + (hic.file ? "file=" + hic.file : "url=" + hic.url));
-    if (data.error) {
-      errList.push(data.error);
-      return;
-    }
-    const err = hicparsestat(hic, data.out);
-    if (err) throw { message: err };
-  } catch (err) {
-    errList.push(err.message || err);
-    if (err.stack) {
-      console.log(err.stack);
-    }
-  }
-  return hic;
-}
-function parseSV(txt) {
-  const lines = txt.trim().split(/\r?\n/);
-  const [err, header] = parseSVheader(lines[0]);
-  if (err) return ["header error: " + err];
-  const items = [];
-  for (let i = 1; i < lines.length; i++) {
-    const line = lines[i];
-    if (line[0] == "#") continue;
-    const [e, m] = parseSVline(line, header);
-    if (e) return ["line " + (i + 1) + " error: " + e];
-    items.push(m);
-  }
-  return [null, header, items];
-}
-function parseSVheader(line) {
-  const header = line.toLowerCase().split("	");
-  if (header.length <= 1) return "invalid file header for fusions";
-  const htry = (...lst) => {
-    for (const a of lst) {
-      const j = header.indexOf(a);
-      if (j != -1) return j;
-    }
-    return -1;
-  };
-  let i = htry("chr_a", "chr1", "chra");
-  if (i == -1) return "chr_A missing from header";
-  header[i] = "chr1";
-  i = htry("chr_b", "chr2", "chrb");
-  if (i == -1) return "chr_B missing from header";
-  header[i] = "chr2";
-  i = htry("pos_a", "position_a", "position1", "posa");
-  if (i == -1) return "pos_a missing from header";
-  header[i] = "position1";
-  i = htry("pos_b", "position_b", "position2", "posb");
-  if (i == -1) return "pos_b missing from header";
-  header[i] = "position2";
-  i = htry("strand_a", "orta", "orienta");
-  if (i == -1) return "strand_a missing from header";
-  header[i] = "strand1";
-  i = htry("strand_b", "ortb", "orientb");
-  if (i == -1) return "strand_b missing from header";
-  header[i] = "strand2";
-  i = htry("numreadsa");
-  if (i != -1) header[i] = "reads1";
-  i = htry("numreadsb");
-  if (i != -1) header[i] = "reads2";
-  return [null, header];
-}
-function parseSVline(line, header) {
-  const lst = line.split("	");
-  const m = {};
-  for (let j = 0; j < header.length; j++) {
-    m[header[j]] = lst[j];
-  }
-  if (!m.chr1) return ["missing chr1"];
-  if (m.chr1.toLowerCase().indexOf("chr") != 0) {
-    m.chr1 = "chr" + m.chr1;
-  }
-  if (!m.chr2) return ["missing chr2"];
-  if (m.chr2.toLowerCase().indexOf("chr") != 0) {
-    m.chr2 = "chr" + m.chr2;
-  }
-  if (!m.position1) return ["missing position1"];
-  let v = Number.parseInt(m.position1);
-  if (Number.isNaN(v) || v <= 0) return ["position1 invalid value"];
-  m.position1 = v;
-  if (!m.position2) return ["missing position2"];
-  v = Number.parseInt(m.position2);
-  if (Number.isNaN(v) || v <= 0) return ["position2 invalid value"];
-  m.position2 = v;
-  if (m.reads1) {
-    v = Number.parseInt(m.reads1);
-    if (Number.isNaN(v)) return ["reads1 invalid value"];
-    m.reads1 = v;
-  }
-  if (m.reads2) {
-    v = Number.parseInt(m.reads2);
-    if (Number.isNaN(v)) return ["reads2 invalid value"];
-    m.reads2 = v;
-  }
-  return [null, m];
-}
-function hicparsestat(hic, j) {
-  if (!j) return "cannot stat hic file";
-  hic.normalization = j.normalization;
-  hic.version = j.version;
-  if (!j.Chromosomes) return "Chromosomes not found in file stat";
-  if (!Array.isArray(j.chrorder)) return ".chrorder[] missing";
-  if (j.chrorder.length == 0) return ".chrorder[] empty array";
-  hic.chrorder = j.chrorder;
-  if (!j["Base pair-delimited resolutions"]) return "Base pair-delimited resolutions not found in file stat";
-  if (!Array.isArray(j["Base pair-delimited resolutions"])) return "Base pair-delimited resolutions should be array";
-  hic.bpresolution = j["Base pair-delimited resolutions"];
-  if (!j["Fragment-delimited resolutions"]) return "Fragment-delimited resolutions not found in file stat";
-  if (!Array.isArray(j["Fragment-delimited resolutions"])) return "Fragment-delimited resolutions is not array";
-  hic.fragresolution = j["Fragment-delimited resolutions"];
-  const chrlst = [];
-  for (const chr in j.Chromosomes) {
-    chrlst.push(chr);
-  }
-  const [nochrcount, haschrcount] = contigNameNoChr2(hic.genome, chrlst);
-  if (nochrcount + haschrcount == 0) return "chromosome names do not match with genome build";
-  if (nochrcount > 0) {
-    hic.nochr = true;
-    for (let i = 0; i < hic.chrorder.length; i++) hic.chrorder[i] = "chr" + hic.chrorder[i];
-  }
-  hic.chrlst = [];
-  for (const chr of hic.genome.majorchrorder) {
-    const c2 = hic.nochr ? chr.replace("chr", "") : chr;
-    if (chrlst.indexOf(c2) != -1) {
-      hic.chrlst.push(chr);
-    }
-  }
-}
-function hicparsefragdata(items) {
-  const id2coord = /* @__PURE__ */ new Map();
-  let min = null, max;
-  for (const i of items) {
-    if (!i.rest || !i.rest[0]) {
-      return ["items[].rest data problem"];
-    }
-    const id = Number.parseInt(i.rest[0]);
-    if (Number.isNaN(id)) {
-      return [i.start + "." + i.stop + " invalid fragment id: " + i.rest[0]];
-    }
-    id2coord.set(id, [i.start, i.stop]);
-    if (min == null) {
-      min = id;
-      max = id;
-    } else {
-      min = Math.min(min, id);
-      max = Math.max(max, id);
-    }
-  }
-  return [null, id2coord, min, max];
-}
-
-export {
-  hicParseFile,
-  hicparsestat,
-  hicparsefragdata
-};
-//# sourceMappingURL=chunk-ZTT6ZHU5.js.map

package/dist/cohort-RF4FT2NT.js

@@ -1,70 +0,0 @@
-import {
-  appInit,
-  vocabInit
-} from "./chunk-K7HFOAR7.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-FSWBNSQD.js";
-import "./chunk-7XZA2XR2.js";
-import "./chunk-DD3DWHUY.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-GP4VLNMZ.js";
-import "./chunk-6AFMWQXZ.js";
-import "./chunk-CME6DYDH.js";
-import {
-  TermTypes
-} from "./chunk-57Z4VYLM.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-6XKAOSQE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// termdb/handlers/cohort.ts
-var SearchHandler = class {
-  init(opts) {
-    this.callback = opts.callback;
-    this.app = opts.app;
-    const holder = opts.holder.append("div").style("padding", "10px 0px");
-    const cohorts = this.app.vocabApi.app?.opts?.opts?.cohorts0;
-    if (!cohorts?.length) return;
-    const terms = cohorts.map((cohort) => {
-      const term = {
-        id: cohort.id,
-        name: cohort.name,
-        type: TermTypes.COHORT,
-        filter0: cohort.filter,
-        isleaf: true,
-        parent_id: null
-      };
-      return term;
-    });
-    const vocabApi = vocabInit({ vocab: { terms } });
-    appInit({
-      holder,
-      vocabApi,
-      state: {
-        nav: { header_mode: "hide_search" }
-      },
-      tree: {
-        click_term: (term) => {
-          this.callback(term);
-        }
-      }
-    });
-  }
-};
-export {
-  SearchHandler
-};
-//# sourceMappingURL=cohort-RF4FT2NT.js.map