@sjcrh/proteinpaint-client 2.210.1 → 2.211.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-FEZRNHDF.js +1367 -0
- package/dist/AggMatrixInput-6FJIELYO.js +406 -0
- package/dist/AggregateMatrix-MUPBUGIZ.js +41 -0
- package/dist/AppHeader-ZTNZ62UL.js +830 -0
- package/dist/BoxPlot-P5SVFYSB.js +1208 -0
- package/dist/BoxPlot-P5SVFYSB.js.map +7 -0
- package/dist/CorrelationVolcano-42NYXAXG.js +617 -0
- package/dist/Cuminc-6AKLT6HF.js +1219 -0
- package/dist/DE-KJHFZWND.js +89 -0
- package/dist/DEinput-HXB3LYZW.js +501 -0
- package/dist/DM-AAHX4PLH.js +90 -0
- package/dist/DifferentialAnalysis-JX4EDEOY.js +239 -0
- package/dist/Disco-GXKO4QQH.js +3389 -0
- package/dist/Disco.UI-DGD4RXJP.js +243 -0
- package/dist/DmrPlot-DQ3XTMTN.js +362 -0
- package/dist/GB-OUWNNBBK.js +1392 -0
- package/dist/GSEA-DSKGFAPG.js +875 -0
- package/dist/GeneExpInput-FZLOBE2Q.js +42 -0
- package/dist/Geomap-GP5KD3OX.js +84 -0
- package/dist/HicApp-2N6WYWZX.js +2245 -0
- package/dist/IDCViewer-MSUC7IXX.js +10812 -0
- package/dist/NumBinaryEditor-C4G2IH36.js +279 -0
- package/dist/NumBinaryEditor.unit.spec-ZAVAUGXA.js +312 -0
- package/dist/NumContEditor-VEEMMWHX.js +105 -0
- package/dist/NumContEditor.unit.spec-65ORC42O.js +164 -0
- package/dist/NumCustomBinEditor-YIUHJAXP.js +33 -0
- package/dist/NumCustomBinEditor.unit.spec-NT5VK2LO.js +397 -0
- package/dist/NumDiscreteEditor-A4WELAJH.js +170 -0
- package/dist/NumDiscreteEditor.unit.spec-7QABM6KK.js +233 -0
- package/dist/NumRegularBinEditor-IPVPLSQY.js +33 -0
- package/dist/NumRegularBinEditor.unit.spec-Q4DMWATB.js +278 -0
- package/dist/NumSplineEditor-5E6CIWLP.js +210 -0
- package/dist/NumSplineEditor.unit.spec-DHJF5F6H.js +224 -0
- package/dist/NumericDensity-GXMWWK2A.js +33 -0
- package/dist/NumericDensity.unit.spec-OAPOMSEW.js +418 -0
- package/dist/NumericHandler-H5WHGFXD.js +34 -0
- package/dist/NumericHandler.unit.spec-PBNOJEMS.js +214 -0
- package/dist/ProteomeInput-ZA7R5S43.js +388 -0
- package/dist/Regression-WSWTSXFX.js +1416 -0
- package/dist/RunChart2-J5CTJI5C.js +749 -0
- package/dist/SC-POCQDMWZ.js +1181 -0
- package/dist/SC-POCQDMWZ.js.map +7 -0
- package/dist/Violin-VA6FBRUQ.js +1064 -0
- package/dist/Violin-VA6FBRUQ.js.map +7 -0
- package/dist/Volcano-4IEQIEDS.js +2456 -0
- package/dist/Wsi-LJ6AY5RI.js +629 -0
- package/dist/adSandbox-EIN4KEML.js +33 -0
- package/dist/animatedBubbleChart-LINYUKMD.js +547 -0
- package/dist/app-SE7UQ5DB.js +42 -0
- package/dist/app-VGMZNGWP.js +32 -0
- package/dist/app.js +16 -16
- package/dist/bam-ZXEZWRSZ.js +876 -0
- package/dist/barchart-N4B4C2FO.js +42 -0
- package/dist/barchart2-EDVEWTVX.js +309 -0
- package/dist/block-E7YUGCHL.js +6250 -0
- package/dist/block.init-FSOCF2IM.js +33 -0
- package/dist/block.mds.expressionrank-EDBTITXU.js +354 -0
- package/dist/block.mds.geneboxplot-GG5672SY.js +823 -0
- package/dist/block.mds.junction-HUC4S24K.js +1539 -0
- package/dist/block.mds.svcnv-EQHYCIBU.js +6796 -0
- package/dist/block.svg-HBVPUQJ2.js +159 -0
- package/dist/block.tk.aicheck-TRJ5IIWZ.js +278 -0
- package/dist/block.tk.ase-COV7YYYO.js +360 -0
- package/dist/block.tk.bam-MDSLY6NH.js +1901 -0
- package/dist/block.tk.bedgraphdot-MKWEL53X.js +379 -0
- package/dist/block.tk.bigwig.ui-UKKJX7TA.js +206 -0
- package/dist/block.tk.hicstraw-6LNXEIOF.js +818 -0
- package/dist/block.tk.junction-F3SERFFD.js +2358 -0
- package/dist/block.tk.junction.textmatrixui-2XUMSKLS.js +194 -0
- package/dist/block.tk.ld-COP5RUJJ.js +94 -0
- package/dist/block.tk.menu-SRDPD44N.js +1024 -0
- package/dist/block.tk.pgv-3SVINTXN.js +938 -0
- package/dist/brainImaging-UNBA4KA3.js +555 -0
- package/dist/brainRegions-DC6TQB53.js +217 -0
- package/dist/bubbleHeatmap-X3W3AZJY.js +378 -0
- package/dist/cellTypeBubbleHeatmap-LFI6TGOO.js +278 -0
- package/dist/chunk-2ANFUNS3.js +102 -0
- package/dist/chunk-2G4SFRWC.js +1278 -0
- package/dist/chunk-2WKGE7BO.js +54 -0
- package/dist/chunk-3CGMCYZB.js +237 -0
- package/dist/chunk-3I4DBVLM.js +55 -0
- package/dist/chunk-42VFF74T.js +397 -0
- package/dist/chunk-4ENIOXIT.js +133 -0
- package/dist/chunk-4ENIOXIT.js.map +7 -0
- package/dist/chunk-4HTRCXLS.js +98 -0
- package/dist/chunk-55T2AMJ3.js +281 -0
- package/dist/chunk-57Z4VYLM.js +1616 -0
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- package/dist/chunk-GP4VLNMZ.js.map +7 -0
- package/dist/chunk-HTZJQNHP.js +562 -0
- package/dist/chunk-ITYNHDDD.js +56 -0
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- package/dist/chunk-J4WRX5G6.js +263 -0
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- package/dist/chunk-K7HFOAR7.js +25008 -0
- package/dist/chunk-K7HFOAR7.js.map +7 -0
- package/dist/chunk-KJGYGPJZ.js +103 -0
- package/dist/chunk-L3UFI52T.js +217 -0
- package/dist/chunk-L4ZPMF7E.js +692 -0
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- package/dist/chunk-MVWJHZ5G.js +783 -0
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- package/dist/chunk-VSTHBKQW.js +480 -0
- package/dist/chunk-W7A4QXZ7.js +38 -0
- package/dist/chunk-WKCVZIN7.js +59 -0
- package/dist/chunk-X7TJBXJJ.js +54 -0
- package/dist/chunk-XEEMCYP6.js +4375 -0
- package/dist/chunk-XTQWAVWJ.js +54 -0
- package/dist/chunk-YAN2MOON.js +5071 -0
- package/dist/chunk-YCBENC6R.js +1769 -0
- package/dist/chunk-YCBENC6R.js.map +7 -0
- package/dist/chunk-YCORHJ64.js +240 -0
- package/dist/chunk-YOBTHZVU.js +80 -0
- package/dist/chunk-ZTT6ZHU5.js +217 -0
- package/dist/cohort-RF4FT2NT.js +70 -0
- package/dist/condition-WXE2CFYT.js +327 -0
- package/dist/controls-AYF4H7UG.js +34 -0
- package/dist/controls.config-TXZKQNYC.js +34 -0
- package/dist/correlation-UAYMVVUS.js +95 -0
- package/dist/customdata.inputui-I7RFOGYM.js +284 -0
- package/dist/dataDownload-4AGSDSEO.js +329 -0
- package/dist/databrowser.ui-RGJEA2BI.js +425 -0
- package/dist/dictionary-AWWQXIRP.js +113 -0
- package/dist/dnaMethylation-PICKZS2M.js +33 -0
- package/dist/dnaMethylation.integration.spec-JUSB3CFZ.js +198 -0
- package/dist/dofetch-ZJMKEYN2.js +48 -0
- package/dist/e2pca-K4W7ZJZG.js +344 -0
- package/dist/ep-OY5YQMEF.js +1249 -0
- package/dist/expclust.gdc.spec-LYDBM3TZ.js +302 -0
- package/dist/facet-7NJHLLCZ.js +519 -0
- package/dist/gb-COV44BMA.js +81 -0
- package/dist/geneExpClustering-EQR5XX4J.js +244 -0
- package/dist/geneExpression-2BNDQ6S6.js +310 -0
- package/dist/geneExpression-PGB6WF5H.js +33 -0
- package/dist/geneExpression.unit.spec-OUNGGOJP.js +128 -0
- package/dist/geneORA-EKNEVQOS.js +273 -0
- package/dist/geneRanking-XUXLRERA.js +548 -0
- package/dist/geneVariant-JZDYV6LS.js +36 -0
- package/dist/geneVariant-KPZ2FYLK.js +289 -0
- package/dist/geneVariant.integration.spec-ISMLGTKC.js +503 -0
- package/dist/genefusion.ui-GRUXFC4U.js +303 -0
- package/dist/geneset-RM4XIX23.js +203 -0
- package/dist/genomeBrowser.spec-X7EOK2LS.js +276 -0
- package/dist/grin2-5XRUMYQO.js +949 -0
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- package/dist/hierCluster-I6T4XD3P.js +55 -0
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- package/dist/hierCluster.interactivity-B5ZNFF4R.js +49 -0
- package/dist/hierCluster.renderers-R2DTKTLI.js +19 -0
- package/dist/imagePlot-ZM4IVDJT.js +156 -0
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- package/dist/isoformExpression-BFCLGD2U.js +35 -0
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- package/dist/launch.adhoc-AHTCA2BP.js +37 -0
- package/dist/leftlabel.sample-LIBMKP22.js +258 -0
- package/dist/lollipop-26ZQH3EL.js +166 -0
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return `M ${CENTER_X} ${round(domeY)} A ${r} ${r} 0 0 ${domeSweep} ${colOuter} ${round(domeY)} L ${colOuter} ${round(BAR_JOIN_Y)} A ${BULB_R} ${BULB_R} 0 0 ${bulbSweep} ${CENTER_X} ${round(BULB_BOTTOM)} L ${CENTER_X} ${round(domeY)} Z`;
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const svg = a.holder.append("svg").attr("data-testid", `sjpp-profileForms-thermometer-${impressionTestIdSuffix(a.groupLabel)}`).attr("width", SVG_W).attr("height", SVG_H);
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barGloss.append("stop").attr("offset", "20%").attr("stop-color", "#fff").attr("stop-opacity", 0.2);
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barGloss.append("stop").attr("offset", "38%").attr("stop-color", "#fff").attr("stop-opacity", 0.03);
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barGloss.append("stop").attr("offset", "100%").attr("stop-color", "#000").attr("stop-opacity", 0.18);
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const innerShade = defs.append("linearGradient").attr("id", innerShadeId).attr("gradientUnits", "userSpaceOnUse").attr("x1", CENTER_X - BULB_R).attr("y1", 0).attr("x2", CENTER_X + BULB_R).attr("y2", 0);
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innerShade.append("stop").attr("offset", "0%").attr("stop-color", "#000").attr("stop-opacity", 0.22);
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148
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innerShade.append("stop").attr("offset", "16%").attr("stop-color", "#000").attr("stop-opacity", 0);
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149
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innerShade.append("stop").attr("offset", "84%").attr("stop-color", "#000").attr("stop-opacity", 0);
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150
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innerShade.append("stop").attr("offset", "100%").attr("stop-color", "#000").attr("stop-opacity", 0.26);
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const bulbShadeId = `${a.id}-bulb-shade`;
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const shade = defs.append("radialGradient").attr("id", bulbShadeId).attr("cx", "50%").attr("cy", "50%").attr("r", "50%");
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153
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shade.append("stop").attr("offset", "55%").attr("stop-color", "#000").attr("stop-opacity", 0);
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154
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shade.append("stop").attr("offset", "100%").attr("stop-color", "#000").attr("stop-opacity", 0.3);
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const bulbGlossId = `${a.id}-bulb-gloss`;
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const gloss = defs.append("radialGradient").attr("id", bulbGlossId).attr("cx", "36%").attr("cy", "30%").attr("r", "45%");
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157
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gloss.append("stop").attr("offset", "0%").attr("stop-color", "#fff").attr("stop-opacity", 0.6);
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158
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gloss.append("stop").attr("offset", "70%").attr("stop-color", "#fff").attr("stop-opacity", 0.06);
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159
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gloss.append("stop").attr("offset", "100%").attr("stop-color", "#fff").attr("stop-opacity", 0);
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const vesselClipId = `${a.id}-vessel-clip`;
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defs.append("clipPath").attr("id", vesselClipId).append("path").attr("d", vessel);
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162
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const inVessel = () => root.append("g").attr("clip-path", `url(#${vesselClipId})`);
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163
|
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const boxX = CENTER_X - BULB_R;
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164
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const boxW = 2 * BULB_R;
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165
|
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const boxY = TUBE_TOP;
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166
|
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const boxH = BULB_BOTTOM - TUBE_TOP;
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167
|
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const trackG = inVessel();
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168
|
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sortedZones.forEach((z, i) => {
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169
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const { top, bottom } = zoneExtent(z, i, sortedZones.length);
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170
|
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trackG.append("rect").attr("class", "impression-zone").attr("x", boxX).attr("y", top).attr("width", boxW).attr("height", bottom - top).attr("fill", z.color).attr("opacity", 0.3);
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171
|
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});
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172
|
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const liquidG = inVessel();
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173
|
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const scX = CENTER_X - BAR_W;
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174
|
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const pocX = CENTER_X;
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175
|
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if (scMedian != null) {
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176
|
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const scFill = liquidG.append("path").attr("class", "sc-fill").attr("data-testid", "sjpp-profileForms-sc-fill").attr("d", liquidPath(yOf(scMedian), "left")).attr("fill", scColor).style("transition", `fill ${HOVER_MS}ms ease-out`);
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177
|
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a.attachTip(
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178
|
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scFill,
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179
|
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`Site Coordinator median: ${scMedian} (n=${scTotal} ${scTotal === 1 ? "SC" : "SCs"})`,
|
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180
|
-
hoverFill(scColor)
|
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181
|
-
);
|
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182
|
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}
|
|
183
|
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if (pocMedian != null) {
|
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184
|
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const pocFill = liquidG.append("path").attr("class", "poc-fill").attr("data-testid", "sjpp-profileForms-poc-fill").attr("d", liquidPath(yOf(pocMedian), "right")).attr("fill", POC_FILL).style("transition", `fill ${HOVER_MS}ms ease-out`);
|
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185
|
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a.attachTip(pocFill, `POC median: ${pocMedian} (n=${pocTotal} staff responses)`, hoverFill(POC_FILL));
|
|
186
|
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}
|
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187
|
-
const overlay = () => inVessel().attr("pointer-events", "none");
|
|
188
|
-
const wet = overlay();
|
|
189
|
-
const columns = [];
|
|
190
|
-
if (scMedian != null) columns.push({ x: scX, median: scMedian });
|
|
191
|
-
if (pocMedian != null) columns.push({ x: pocX, median: pocMedian });
|
|
192
|
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for (const c of columns) {
|
|
193
|
-
const d = barPath(c.x, yOf(c.median), BAR_W, BAR_JOIN_Y);
|
|
194
|
-
wet.append("path").attr("class", "liquid-gloss").attr("d", d).attr("fill", `url(#${sheenId})`);
|
|
195
|
-
wet.append("path").attr("class", "liquid-gloss").attr("d", d).attr("fill", `url(#${barGlossId})`);
|
|
196
|
-
}
|
|
197
|
-
const bulbShading = overlay();
|
|
198
|
-
bulbShading.append("circle").attr("cx", CENTER_X).attr("cy", BULB_CY).attr("r", BULB_R).attr("fill", `url(#${bulbShadeId})`);
|
|
199
|
-
bulbShading.append("circle").attr("cx", CENTER_X).attr("cy", BULB_CY).attr("r", BULB_R).attr("fill", `url(#${bulbGlossId})`);
|
|
200
|
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overlay().append("rect").attr("x", boxX).attr("y", boxY).attr("width", boxW).attr("height", boxH).attr("fill", `url(#${innerShadeId})`);
|
|
201
|
-
root.append("path").attr("class", "vessel-outline").attr("d", vessel).attr("fill", "none").attr("stroke", "#444").attr("stroke-width", 2).attr("pointer-events", "none");
|
|
202
|
-
const ratings = [];
|
|
203
|
-
for (let r = 1; r <= maxScore; r++) ratings.push(r);
|
|
204
|
-
const axis = root.append("g").attr("transform", `translate(${TUBE_X}, 0)`).call(
|
|
205
|
-
axisLeft(yScale).tickValues(ratings).tickFormat((d) => String(d)).tickSize(-5).tickPadding(8)
|
|
206
|
-
);
|
|
207
|
-
axisstyle({ axis, showline: false, color: "#333" });
|
|
208
|
-
root.append("text").attr("transform", `translate(${TUBE_X - 32}, ${TUBE_TOP + TUBE_H / 2}) rotate(-90)`).attr("text-anchor", "middle").attr("font-size", "0.9rem").attr("font-weight", "bold").text(a.ratingAxisLabel);
|
|
209
|
-
}
|
|
210
|
-
|
|
211
|
-
// plots/profile/renderResponseDistribution.ts
|
|
212
|
-
var POC_COLUMN_FILL = "#bdbdbd";
|
|
213
|
-
var AXIS_COLOR = "#333";
|
|
214
|
-
var POC_COLUMN_STROKE = "#616161";
|
|
215
|
-
var SC_POINT_R = 5;
|
|
216
|
-
var MARGIN = { top: 24, right: 64, bottom: 52, left: 64 };
|
|
217
|
-
var PLOT_W = 300;
|
|
218
|
-
var PLOT_H = 260;
|
|
219
|
-
function renderResponseDistribution(a) {
|
|
220
|
-
const maxScore = a.maxScore;
|
|
221
|
-
const scColor = a.colors?.sc || "#888";
|
|
222
|
-
const ratings = [];
|
|
223
|
-
for (let r = 1; r <= maxScore; r++) ratings.push(r);
|
|
224
|
-
const scByRating = {};
|
|
225
|
-
for (const d of a.scDistribution || []) scByRating[d.rating] = d;
|
|
226
|
-
const pocByRating = {};
|
|
227
|
-
for (const d of a.pocDistribution || []) pocByRating[d.rating] = d;
|
|
228
|
-
const scTotal = (a.scDistribution || []).reduce((s, d) => s + (d.count || 0), 0);
|
|
229
|
-
const maxScCount = Math.max(1, ...ratings.map((r) => scByRating[r]?.count || 0));
|
|
230
|
-
const maxPocCount = Math.max(1, ...ratings.map((r) => pocByRating[r]?.count || 0));
|
|
231
|
-
const svgW = MARGIN.left + PLOT_W + MARGIN.right;
|
|
232
|
-
const svgH = MARGIN.top + PLOT_H + MARGIN.bottom;
|
|
233
|
-
const svg = a.holder.append("svg").attr("data-testid", `sjpp-profileForms-distribution-${impressionTestIdSuffix(a.groupLabel)}`).attr("width", svgW).attr("height", svgH);
|
|
234
|
-
const plot = svg.append("g").attr("transform", `translate(${MARGIN.left}, ${MARGIN.top})`);
|
|
235
|
-
const HEADROOM = 1.15;
|
|
236
|
-
const x = band().domain(ratings.map(String)).range([0, PLOT_W]).padding(0.2);
|
|
237
|
-
const yLeft = linear().domain([0, maxScCount * HEADROOM]).range([PLOT_H, 0]).nice();
|
|
238
|
-
const yRight = linear().domain([0, maxPocCount * HEADROOM]).range([PLOT_H, 0]).nice();
|
|
239
|
-
const bw = x.bandwidth();
|
|
240
|
-
const step = x.step();
|
|
241
|
-
for (const z of a.zones) {
|
|
242
|
-
const cMin = x(String(z.min));
|
|
243
|
-
const cMax = x(String(z.max));
|
|
244
|
-
if (cMin == null || cMax == null) continue;
|
|
245
|
-
const zStart = Math.max(0, cMin + bw / 2 - step / 2);
|
|
246
|
-
const zEnd = Math.min(PLOT_W, cMax + bw / 2 + step / 2);
|
|
247
|
-
plot.append("rect").attr("class", "impression-zone").attr("x", zStart).attr("y", 0).attr("width", zEnd - zStart).attr("height", PLOT_H).attr("fill", z.color).attr("opacity", 0.3);
|
|
248
|
-
}
|
|
249
|
-
for (const r of ratings) {
|
|
250
|
-
const bin = pocByRating[r];
|
|
251
|
-
const count = bin?.count || 0;
|
|
252
|
-
const bx = x(String(r));
|
|
253
|
-
if (bx == null) continue;
|
|
254
|
-
const col = plot.append("rect").attr("class", "poc-column").attr("x", bx).attr("y", yRight(count)).attr("width", x.bandwidth()).attr("height", PLOT_H - yRight(count)).attr("fill", POC_COLUMN_FILL).attr("stroke", POC_COLUMN_STROKE).attr("stroke-width", 0.5);
|
|
255
|
-
a.attachTip(col, `POC rating ${r}: ${count} response${count === 1 ? "" : "s"}`, {
|
|
256
|
-
on: { fill: "#8d8d8d" },
|
|
257
|
-
off: { fill: POC_COLUMN_FILL }
|
|
258
|
-
});
|
|
259
|
-
}
|
|
260
|
-
const cx = (r) => (x(String(r)) ?? 0) + x.bandwidth() / 2;
|
|
261
|
-
if (scTotal === 1) {
|
|
262
|
-
for (const r of ratings) {
|
|
263
|
-
const count = scByRating[r]?.count || 0;
|
|
264
|
-
if (count <= 0) continue;
|
|
265
|
-
const pt = plot.append("circle").attr("class", "sc-point").attr("cx", cx(r)).attr("cy", yLeft(count)).attr("r", SC_POINT_R).attr("fill", scColor);
|
|
266
|
-
a.attachTip(pt, `SC rating ${r}: ${count} response`, {
|
|
267
|
-
on: { stroke: "#222", "stroke-width": "1.5" },
|
|
268
|
-
off: { stroke: "none" }
|
|
269
|
-
});
|
|
270
|
-
}
|
|
271
|
-
} else {
|
|
272
|
-
const lineGen = line_default().x((r) => cx(r)).y((r) => yLeft(scByRating[r]?.count || 0));
|
|
273
|
-
plot.append("path").attr("class", "sc-line").attr("d", lineGen(ratings)).attr("fill", "none").attr("stroke", scColor).attr("stroke-width", 2);
|
|
274
|
-
for (const r of ratings) {
|
|
275
|
-
const count = scByRating[r]?.count || 0;
|
|
276
|
-
const pt = plot.append("circle").attr("class", "sc-point").attr("cx", cx(r)).attr("cy", yLeft(count)).attr("r", 3).attr("fill", scColor);
|
|
277
|
-
a.attachTip(pt, `SC rating ${r}: ${count} response${count === 1 ? "" : "s"}`, {
|
|
278
|
-
on: { stroke: "#222", "stroke-width": "1.5" },
|
|
279
|
-
off: { stroke: "none" }
|
|
280
|
-
});
|
|
281
|
-
}
|
|
282
|
-
}
|
|
283
|
-
const xAxis = plot.append("g").attr("transform", `translate(0, ${PLOT_H})`).call(axisBottom(x));
|
|
284
|
-
axisstyle({ axis: xAxis, showline: true, color: AXIS_COLOR });
|
|
285
|
-
const leftAxis = plot.append("g").call(axisLeft(yLeft).ticks(5));
|
|
286
|
-
axisstyle({ axis: leftAxis, showline: true, color: AXIS_COLOR });
|
|
287
|
-
const rightAxis = plot.append("g").attr("transform", `translate(${PLOT_W}, 0)`).call(axisRight(yRight).ticks(5));
|
|
288
|
-
axisstyle({ axis: rightAxis, showline: true, color: AXIS_COLOR });
|
|
289
|
-
plot.append("text").attr("transform", `translate(${PLOT_W / 2}, ${PLOT_H + 40})`).attr("text-anchor", "middle").attr("font-size", "0.85rem").attr("font-weight", "bold").attr("fill", AXIS_COLOR).text(a.texts.xAxisLabel);
|
|
290
|
-
plot.append("text").attr("transform", `translate(${-MARGIN.left + 14}, ${PLOT_H / 2}) rotate(-90)`).attr("text-anchor", "middle").attr("font-size", "0.82rem").attr("font-weight", "bold").attr("fill", AXIS_COLOR).text(a.texts.leftAxisLabel);
|
|
291
|
-
plot.append("text").attr("transform", `translate(${PLOT_W + MARGIN.right - 14}, ${PLOT_H / 2}) rotate(90)`).attr("text-anchor", "middle").attr("font-size", "0.82rem").attr("font-weight", "bold").attr("fill", AXIS_COLOR).text(a.texts.rightAxisLabel);
|
|
292
|
-
}
|
|
293
|
-
|
|
294
|
-
// plots/profile/renderImpressionLegend.ts
|
|
295
|
-
var SWATCH_SIZE = 14;
|
|
296
|
-
var LINE_W = 22;
|
|
297
|
-
var DOT_R = 4;
|
|
298
|
-
var LABEL_GAP = 6;
|
|
299
|
-
var ITEM_GAP = 20;
|
|
300
|
-
var ROW_H = 22;
|
|
301
|
-
var PAD_X = 2;
|
|
302
|
-
var FONT_SIZE = "0.8rem";
|
|
303
|
-
var ZONE_OPACITY = 0.3;
|
|
304
|
-
var textWidth = (sel) => sel.node().getBBox().width;
|
|
305
|
-
function renderImpressionLegend(a) {
|
|
306
|
-
const holder = a.holder.style("display", "flex").style("justify-content", "center").style("padding-top", "8px");
|
|
307
|
-
const svg = holder.append("svg").attr("data-testid", "sjpp-profileForms-impression-legend");
|
|
308
|
-
const g = svg.append("g");
|
|
309
|
-
const seriesG = g.append("g");
|
|
310
|
-
const seriesCy = ROW_H / 2;
|
|
311
|
-
let sx = 0;
|
|
312
|
-
for (const s of a.series) {
|
|
313
|
-
const item = seriesG.append("g").attr("class", "impression-legend-item");
|
|
314
|
-
const swatchW = s.symbol === "line" ? LINE_W : SWATCH_SIZE;
|
|
315
|
-
if (s.symbol === "line") {
|
|
316
|
-
item.append("line").attr("x1", sx).attr("y1", seriesCy).attr("x2", sx + LINE_W).attr("y2", seriesCy).attr("stroke", s.color).attr("stroke-width", 2);
|
|
317
|
-
item.append("circle").attr("cx", sx + LINE_W / 2).attr("cy", seriesCy).attr("r", DOT_R).attr("fill", s.color);
|
|
318
|
-
} else if (s.symbol === "circle") {
|
|
319
|
-
item.append("circle").attr("cx", sx + SWATCH_SIZE / 2).attr("cy", seriesCy).attr("r", SWATCH_SIZE / 2).attr("fill", s.color).attr("stroke", "#666").attr("stroke-width", 0.5);
|
|
320
|
-
} else {
|
|
321
|
-
item.append("rect").attr("x", sx).attr("y", seriesCy - SWATCH_SIZE / 2).attr("width", SWATCH_SIZE).attr("height", SWATCH_SIZE).attr("fill", s.color).attr("stroke", "#666").attr("stroke-width", 0.5);
|
|
322
|
-
}
|
|
323
|
-
const label = item.append("text").attr("x", sx + swatchW + LABEL_GAP).attr("y", seriesCy).attr("dominant-baseline", "central").attr("font-size", FONT_SIZE).text(s.label);
|
|
324
|
-
sx += swatchW + LABEL_GAP + textWidth(label) + ITEM_GAP;
|
|
325
|
-
}
|
|
326
|
-
const seriesW = Math.max(0, sx - ITEM_GAP);
|
|
327
|
-
const zonesG = g.append("g");
|
|
328
|
-
const zonesCy = ROW_H + ROW_H / 2;
|
|
329
|
-
let zx = 0;
|
|
330
|
-
for (const z of [...a.zones].sort((z1, z2) => z1.min - z2.min)) {
|
|
331
|
-
const item = zonesG.append("g").attr("class", "impression-legend-zone");
|
|
332
|
-
item.append("rect").attr("x", zx).attr("y", zonesCy - SWATCH_SIZE / 2).attr("width", SWATCH_SIZE).attr("height", SWATCH_SIZE).attr("fill", z.color).attr("opacity", ZONE_OPACITY).attr("stroke", "#ccc").attr("stroke-width", 0.5);
|
|
333
|
-
const label = item.append("text").attr("x", zx + SWATCH_SIZE + LABEL_GAP).attr("y", zonesCy).attr("dominant-baseline", "central").attr("font-size", FONT_SIZE).text(z.label);
|
|
334
|
-
zx += SWATCH_SIZE + LABEL_GAP + textWidth(label) + ITEM_GAP;
|
|
335
|
-
}
|
|
336
|
-
const zonesW = Math.max(0, zx - ITEM_GAP);
|
|
337
|
-
const totalW = Math.max(seriesW, zonesW);
|
|
338
|
-
seriesG.attr("transform", `translate(${PAD_X + (totalW - seriesW) / 2}, 0)`);
|
|
339
|
-
zonesG.attr("transform", `translate(${PAD_X + (totalW - zonesW) / 2}, 0)`);
|
|
340
|
-
svg.attr("width", Math.ceil(totalW) + 2 * PAD_X).attr("height", 2 * ROW_H);
|
|
341
|
-
}
|
|
342
|
-
|
|
343
|
-
// plots/profile/profileForms.ts
|
|
344
|
-
var YES_NO_TAB = "Yes/No Barchart";
|
|
345
|
-
var LIKERT_TAB = "Likert Scale";
|
|
346
|
-
var IMPRESSION_SUFFIX = "__Impression";
|
|
347
|
-
var profileForms = class extends profilePlot {
|
|
348
|
-
constructor(opts) {
|
|
349
|
-
super(opts, "profileForms");
|
|
350
|
-
// Responder-level multivalue impression term ids under this __Impression domain
|
|
351
|
-
// (POCFimpression_mod*). When present, the route builds the POC distribution per
|
|
352
|
-
// responder from these instead of the per-site pocTW float.
|
|
353
|
-
this.pocResponderTermIds = [];
|
|
354
|
-
this.opts = opts;
|
|
355
|
-
this.id2SCTW = {};
|
|
356
|
-
}
|
|
357
|
-
static {
|
|
358
|
-
this.type = "profileForms";
|
|
359
|
-
}
|
|
360
|
-
async init(appState) {
|
|
361
|
-
super.init(appState);
|
|
362
|
-
const config = structuredClone(appState.plots.find((p) => p.id === this.id));
|
|
363
|
-
const parentId = config.tw?.term?.id || "";
|
|
364
|
-
this.isImpressionDomain = parentId.endsWith(IMPRESSION_SUFFIX);
|
|
365
|
-
const settings = config.settings.profileForms;
|
|
366
|
-
this.tabs = [];
|
|
367
|
-
this.twLst = [];
|
|
368
|
-
if (this.isImpressionDomain) {
|
|
369
|
-
const cohortValuelst = appState.termdbConfig?.selectCohort ? appState.termdbConfig.selectCohort.values[appState.activeCohort]?.keys : null;
|
|
370
|
-
const childData = await this.vocabApi.getTermChildren({ id: parentId }, cohortValuelst);
|
|
371
|
-
const children = childData?.lst || [];
|
|
372
|
-
const scChild = children.find((t) => t.type === "integer") || children[0];
|
|
373
|
-
const pocChild = children.find((t) => t.type === "float");
|
|
374
|
-
this.pocResponderTermIds = children.filter((t) => t.type === "multivalue").map((t) => t.id);
|
|
375
|
-
if (!scChild) {
|
|
376
|
-
console.error("profileForms impression-domain SC child not found:", { parentId, cohortValuelst, childData });
|
|
377
|
-
}
|
|
378
|
-
if (scChild) {
|
|
379
|
-
this.scTW = { id: scChild.id, q: { mode: "continuous" } };
|
|
380
|
-
await fillTermWrapper(this.scTW, this.app.vocabApi);
|
|
381
|
-
this.impressionScColor = this.scTW.term.color;
|
|
382
|
-
}
|
|
383
|
-
if (pocChild) {
|
|
384
|
-
this.pocTW = { id: pocChild.id, q: { mode: "continuous" } };
|
|
385
|
-
await fillTermWrapper(this.pocTW, this.app.vocabApi);
|
|
386
|
-
this.impressionPocColor = this.pocTW.term.color;
|
|
387
|
-
}
|
|
388
|
-
} else {
|
|
389
|
-
this.twLst = await this.vocabApi.getMultivalueTWs({ parent_id: parentId });
|
|
390
|
-
for (const plot of config.options) {
|
|
391
|
-
const tws = this.twLst.filter((tw) => tw.term.subtype == plot.subtype);
|
|
392
|
-
if (!tws.length) continue;
|
|
393
|
-
const tab = {
|
|
394
|
-
label: plot.name,
|
|
395
|
-
callback: () => {
|
|
396
|
-
this.app.dispatch({ type: "plot_edit", id: this.id, config: { activeTab: plot.name } });
|
|
397
|
-
},
|
|
398
|
-
active: false
|
|
399
|
-
};
|
|
400
|
-
if (plot.name == config.activeTab) tab.active = true;
|
|
401
|
-
if (plot.hasSC) {
|
|
402
|
-
this.id2SCTW[plot.name] = {};
|
|
403
|
-
for (const tw of this.twLst) {
|
|
404
|
-
if (tw.term.subtype != plot.subtype) continue;
|
|
405
|
-
const scTermId = tw.term.id.replace(/^POC/, "");
|
|
406
|
-
const scTW = { id: scTermId };
|
|
407
|
-
await fillTermWrapper(scTW, this.app.vocabApi);
|
|
408
|
-
this.id2SCTW[plot.name][scTermId] = scTW;
|
|
409
|
-
}
|
|
410
|
-
this.twLst.push(...Object.values(this.id2SCTW[plot.name]));
|
|
411
|
-
}
|
|
412
|
-
this.tabs.push(tab);
|
|
413
|
-
}
|
|
414
|
-
}
|
|
415
|
-
const rightDiv = this.dom.rightDiv;
|
|
416
|
-
const topDiv = rightDiv.append("div");
|
|
417
|
-
const domainDiv = topDiv.append("div").style("padding-bottom", "10px").style("font-weight", "bold");
|
|
418
|
-
const headerDiv = rightDiv.append("div").style("padding-bottom", "10px");
|
|
419
|
-
if (!this.isImpressionDomain && this.tabs.length > 1)
|
|
420
|
-
await new Tabs({
|
|
421
|
-
holder: topDiv,
|
|
422
|
-
tabsPosition: "horizontal",
|
|
423
|
-
tabs: this.tabs
|
|
424
|
-
}).main();
|
|
425
|
-
const shift = 690;
|
|
426
|
-
const shiftTop = 50;
|
|
427
|
-
const width = settings.svgw + shift + 500;
|
|
428
|
-
const svg = rightDiv.style("padding", "20px").append("svg").attr("width", width);
|
|
429
|
-
svg.append("defs").append("pattern").attr("id", `${this.id}_diagonalHatch`).attr("patternUnits", "userSpaceOnUse").attr("width", 4).attr("height", 4).append("path").attr("d", "M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2").attr("stroke-width", 1).attr("stroke", "gray");
|
|
430
|
-
this.shiftTop = shiftTop;
|
|
431
|
-
this.shift = shift;
|
|
432
|
-
const mainG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
|
|
433
|
-
const gridG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
|
|
434
|
-
this.filterG = svg.append("g").attr("transform", `translate(${shift + settings.svgw + 60}, ${shiftTop + 40})`);
|
|
435
|
-
this.legendG = svg.append("g");
|
|
436
|
-
const xAxisG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop / 2})`);
|
|
437
|
-
const impressionDiv = rightDiv.append("div");
|
|
438
|
-
if (this.isImpressionDomain) svg.style("display", "none");
|
|
439
|
-
this.dom = copyMerge(this.dom, {
|
|
440
|
-
svg,
|
|
441
|
-
headerDiv,
|
|
442
|
-
mainG,
|
|
443
|
-
gridG,
|
|
444
|
-
legendG: this.legendG,
|
|
445
|
-
xAxisG,
|
|
446
|
-
domainDiv,
|
|
447
|
-
impressionDiv
|
|
448
|
-
});
|
|
449
|
-
}
|
|
450
|
-
async main() {
|
|
451
|
-
this.dom.loadingDiv.style("display", "");
|
|
452
|
-
try {
|
|
453
|
-
await super.main();
|
|
454
|
-
const parents = this.config.tw.term.id.split("__");
|
|
455
|
-
this.module = parents[1];
|
|
456
|
-
const domain = parents.slice(1).join(" / ");
|
|
457
|
-
this.dom.domainDiv.style("display", this.isImpressionDomain ? "none" : "").text(domain);
|
|
458
|
-
this.dom.mainG.selectAll("*").remove();
|
|
459
|
-
this.dom.gridG.selectAll("*").remove();
|
|
460
|
-
this.dom.xAxisG.selectAll("*").remove();
|
|
461
|
-
this.dom.legendG.selectAll("*").remove();
|
|
462
|
-
if (this.isImpressionDomain) {
|
|
463
|
-
await this.setControls();
|
|
464
|
-
this.data = await this.fetchImpressionDistribution();
|
|
465
|
-
if (this.data && "error" in this.data) throw this.data.error;
|
|
466
|
-
this.renderImpression();
|
|
467
|
-
return;
|
|
468
|
-
}
|
|
469
|
-
if (this.tabs.length == 0) return;
|
|
470
|
-
const activeTab = this.state.config.activeTab || this.tabs[0].label;
|
|
471
|
-
this.activePlot = this.state.config.options.find((p) => p.name == activeTab);
|
|
472
|
-
this.scoreTerms = this.twLst.filter((tw) => tw.term.subtype == this.activePlot.subtype);
|
|
473
|
-
if (this.activePlot.hasSC) {
|
|
474
|
-
this.scScoreTerms = Object.values(this.id2SCTW[this.activePlot.name]);
|
|
475
|
-
}
|
|
476
|
-
this.categories = /* @__PURE__ */ new Set();
|
|
477
|
-
await this.setControls();
|
|
478
|
-
this.renderPlot();
|
|
479
|
-
this.filterG.selectAll("*").remove();
|
|
480
|
-
this.addFilterLegend();
|
|
481
|
-
} finally {
|
|
482
|
-
this.dom.loadingDiv.style("display", "none");
|
|
483
|
-
}
|
|
484
|
-
}
|
|
485
|
-
async setControls(additionalInputs = []) {
|
|
486
|
-
if (!this.isImpressionDomain) return super.setControls(additionalInputs);
|
|
487
|
-
const savedType = this.type;
|
|
488
|
-
this.type = "__impressionDomain";
|
|
489
|
-
try {
|
|
490
|
-
await super.setControls(additionalInputs);
|
|
491
|
-
} finally {
|
|
492
|
-
;
|
|
493
|
-
this.type = savedType;
|
|
494
|
-
}
|
|
495
|
-
}
|
|
496
|
-
renderPlot() {
|
|
497
|
-
try {
|
|
498
|
-
this.dom.headerDiv.style("display", "none");
|
|
499
|
-
switch (this.activePlot.name) {
|
|
500
|
-
case LIKERT_TAB:
|
|
501
|
-
this.renderLikert();
|
|
502
|
-
break;
|
|
503
|
-
case YES_NO_TAB:
|
|
504
|
-
this.renderYesNo();
|
|
505
|
-
}
|
|
506
|
-
} catch (e) {
|
|
507
|
-
console.error("Error rendering profile forms plot:", e);
|
|
508
|
-
throw e;
|
|
509
|
-
}
|
|
510
|
-
}
|
|
511
|
-
async fetchImpressionDistribution() {
|
|
512
|
-
if (!this.scTW) return { error: "missing SC term for impression domain" };
|
|
513
|
-
const body = {
|
|
514
|
-
genome: this.state.vocab.genome,
|
|
515
|
-
dslabel: this.state.vocab.dslabel,
|
|
516
|
-
scTermId: this.scTW.term.id,
|
|
517
|
-
maxScore: IMPRESSION_MAX_SCORE,
|
|
518
|
-
filter: this.filter,
|
|
519
|
-
filterByUserSites: this.settings?.filterByUserSites
|
|
520
|
-
};
|
|
521
|
-
if (this.pocTW) body.pocTermId = this.pocTW.term.id;
|
|
522
|
-
if (this.pocResponderTermIds.length) body.pocResponderTermIds = this.pocResponderTermIds;
|
|
523
|
-
return dofetch3("termdb/profileImpressionDistribution", { body });
|
|
524
|
-
}
|
|
525
|
-
/*
|
|
526
|
-
Impression-domain view: for each POC responder group render a thermometer (shared SC median +
|
|
527
|
-
that group's POC median, with performance zones) beside a response-distribution combo chart
|
|
528
|
-
(SC line on the left axis, grey POC columns on the right axis). Groups stack vertically. A
|
|
529
|
-
module with no POC responders (e.g. Patients & Outcomes) renders a single SC-only thermometer.
|
|
530
|
-
*/
|
|
531
|
-
renderImpression() {
|
|
532
|
-
const holder = this.dom.impressionDiv;
|
|
533
|
-
holder.selectAll("*").remove();
|
|
534
|
-
const texts = this.config.impression;
|
|
535
|
-
if (!texts) throw `Missing impression config for the plot ${this.type} in this dataset`;
|
|
536
|
-
if (!texts.legend?.sc) throw `Missing impression.legend.sc for the plot ${this.type} in this dataset`;
|
|
537
|
-
const scColor = this.impressionScColor || "#888";
|
|
538
|
-
const data = this.data;
|
|
539
|
-
const moduleShades = this.state.termdbConfig?.colorMap?.[this.module] || {};
|
|
540
|
-
const zones = texts.zones.map((z) => ({
|
|
541
|
-
label: z.label,
|
|
542
|
-
min: z.min,
|
|
543
|
-
max: z.max,
|
|
544
|
-
color: moduleShades[z.shade] || scColor
|
|
545
|
-
}));
|
|
546
|
-
const attachTip = (sel, text, hover) => {
|
|
547
|
-
sel.datum({ tip: text, ...hover || {} }).style("cursor", "pointer");
|
|
548
|
-
};
|
|
549
|
-
const responders = Array.isArray(data.responders) ? data.responders : [];
|
|
550
|
-
const groups = responders.length ? responders.map((r) => ({
|
|
551
|
-
groupLabel: r.label,
|
|
552
|
-
poc: { median: r.median, total: r.total },
|
|
553
|
-
pocDistribution: r.distribution
|
|
554
|
-
})) : [{ groupLabel: null, poc: null, pocDistribution: [] }];
|
|
555
|
-
groups.forEach((g, i) => {
|
|
556
|
-
const groupLabel = g.groupLabel || texts.legend.sc;
|
|
557
|
-
const block = holder.append("div").attr("class", "sjpp-impression-card").attr("data-testid", "sjpp-profileForms-impression-card").attr("data-group-label", groupLabel).style("width", "fit-content").style("max-width", "100%").style("margin", "18px auto");
|
|
558
|
-
const header = block.append("div").style("text-align", "center");
|
|
559
|
-
header.append("div").attr("data-testid", "sjpp-profileForms-impression-title").style("font-size", "1.25rem").style("font-weight", "bold").style("padding", "4px 0").text(texts.titleTemplate.replace("{module}", this.module));
|
|
560
|
-
if (g.poc)
|
|
561
|
-
header.append("div").attr("data-testid", "sjpp-profileForms-impression-comparison").style("font-size", "1.05rem").style("font-weight", "bold").text(texts.comparisonTitle.replace("{group}", g.groupLabel));
|
|
562
|
-
const filterSvg = header.append("div").style("padding", "2px 0").append("svg");
|
|
563
|
-
this.filtersCount = 0;
|
|
564
|
-
this.filterG = filterSvg.append("g");
|
|
565
|
-
this.addFilterLegend();
|
|
566
|
-
const ffb = filterSvg.node().getBBox();
|
|
567
|
-
const fpad = 3;
|
|
568
|
-
this.filterG.attr("transform", `translate(${-ffb.x + fpad}, ${-ffb.y + fpad})`);
|
|
569
|
-
filterSvg.attr("width", Math.ceil(ffb.width + 2 * fpad)).attr("height", Math.ceil(ffb.height + 2 * fpad));
|
|
570
|
-
const box = block.append("div").style("border", "1px solid #bbb").style("border-radius", "8px").style("background", "#fff").style("margin-top", "6px");
|
|
571
|
-
const body = box.append("div").style("display", "flex").style("flex-wrap", "wrap").style("align-items", "stretch").style("justify-content", "center");
|
|
572
|
-
const chartPanel = (title, divider, testid) => {
|
|
573
|
-
const panel = body.append("div").attr("data-testid", testid).style("padding", "12px 18px").style("display", "flex").style("flex-direction", "column").style("align-items", "center");
|
|
574
|
-
if (divider) panel.style("border-right", "1px solid #ddd");
|
|
575
|
-
panel.append("div").style("text-align", "center").style("font-weight", "bold").style("font-size", "1rem").style("padding-bottom", "4px").text(title);
|
|
576
|
-
const chartWrap = panel.append("div").style("flex", "1 1 auto").style("display", "flex").style("align-items", "center");
|
|
577
|
-
return { panel, chartHolder: chartWrap.append("div") };
|
|
578
|
-
};
|
|
579
|
-
const thermo = chartPanel(texts.chartTitles.thermometer, !!g.poc, "sjpp-profileForms-thermometer-panel");
|
|
580
|
-
renderImpressionThermometer({
|
|
581
|
-
holder: thermo.chartHolder,
|
|
582
|
-
id: `${this.id}-g${i}`,
|
|
583
|
-
groupLabel,
|
|
584
|
-
sc: { median: data.scMedian, total: data.scTotal },
|
|
585
|
-
poc: g.poc,
|
|
586
|
-
ratingAxisLabel: texts.ratingAxisLabel,
|
|
587
|
-
zones,
|
|
588
|
-
colors: { sc: scColor },
|
|
589
|
-
attachTip
|
|
590
|
-
});
|
|
591
|
-
renderImpressionLegend({
|
|
592
|
-
holder: thermo.panel.append("div"),
|
|
593
|
-
series: [
|
|
594
|
-
{ color: scColor, label: texts.legend.sc, symbol: "circle" },
|
|
595
|
-
...g.poc ? [{ color: POC_FILL, label: texts.legend.poc, symbol: "circle" }] : []
|
|
596
|
-
],
|
|
597
|
-
zones
|
|
598
|
-
});
|
|
599
|
-
if (g.poc) {
|
|
600
|
-
const dist = chartPanel(texts.chartTitles.distribution, false, "sjpp-profileForms-distribution-panel");
|
|
601
|
-
renderResponseDistribution({
|
|
602
|
-
holder: dist.chartHolder,
|
|
603
|
-
id: `${this.id}-dist-g${i}`,
|
|
604
|
-
groupLabel,
|
|
605
|
-
maxScore: IMPRESSION_MAX_SCORE,
|
|
606
|
-
scDistribution: data.scDistribution || [],
|
|
607
|
-
pocDistribution: g.pocDistribution,
|
|
608
|
-
texts: texts.distribution,
|
|
609
|
-
zones,
|
|
610
|
-
colors: { sc: scColor },
|
|
611
|
-
attachTip
|
|
612
|
-
});
|
|
613
|
-
renderImpressionLegend({
|
|
614
|
-
holder: dist.panel.append("div"),
|
|
615
|
-
series: [
|
|
616
|
-
{ color: scColor, label: texts.legend.sc, symbol: "line" },
|
|
617
|
-
{ color: POC_FILL, label: texts.legend.poc, symbol: "square" }
|
|
618
|
-
],
|
|
619
|
-
zones
|
|
620
|
-
});
|
|
621
|
-
}
|
|
622
|
-
});
|
|
623
|
-
}
|
|
624
|
-
/*
|
|
625
|
-
The impression view renders each card's charts as separate <svg> elements under impressionDiv and
|
|
626
|
-
hides the main this.dom.svg, so the base getChartImages() — which only collects this.dom.svg —
|
|
627
|
-
would hand the download menu one empty, hidden svg (nothing downloads). Collect the card svgs
|
|
628
|
-
instead, keyed by the group label so a multi-card module downloads sensibly. The Likert/YesNo
|
|
629
|
-
path still draws into this.dom.svg, so it keeps the base behavior.
|
|
630
|
-
*/
|
|
631
|
-
getChartImages() {
|
|
632
|
-
if (!this.isImpressionDomain) return super.getChartImages();
|
|
633
|
-
const note = "\xA9 2025 St. Jude Children\u2019s Research Hospital";
|
|
634
|
-
const charts = [];
|
|
635
|
-
this.dom.impressionDiv.selectAll(".sjpp-impression-card").each(function() {
|
|
636
|
-
const card = select_default(this);
|
|
637
|
-
const label = card.attr("data-group-label") || "";
|
|
638
|
-
card.selectAll("svg").each(function() {
|
|
639
|
-
charts.push({ name: `${label} ${note}`.trim(), svg: select_default(this) });
|
|
640
|
-
});
|
|
641
|
-
});
|
|
642
|
-
return charts;
|
|
643
|
-
}
|
|
644
|
-
renderLikert() {
|
|
645
|
-
this.dom.headerDiv.style("display", "block");
|
|
646
|
-
this.dom.headerDiv.selectAll("*").remove();
|
|
647
|
-
let y = 0;
|
|
648
|
-
const step = 30;
|
|
649
|
-
const height = (this.scoreTerms.length + 2) * step;
|
|
650
|
-
this.dom.svg.attr("height", height + 120);
|
|
651
|
-
this.categories = /* @__PURE__ */ new Set();
|
|
652
|
-
const labelPadding = 80;
|
|
653
|
-
const tempG = this.dom.svg.append("g").style("visibility", "hidden");
|
|
654
|
-
let maxLabelWidth = 0;
|
|
655
|
-
for (const tw of this.scoreTerms) {
|
|
656
|
-
if (tw.term.type != "multivalue") continue;
|
|
657
|
-
const text = getText(tw.term.details || tw.term.name);
|
|
658
|
-
const tempText = tempG.append("text").style("font-size", "0.85em").text(text);
|
|
659
|
-
const w = tempText.node().getBBox().width;
|
|
660
|
-
if (w > maxLabelWidth) maxLabelWidth = w;
|
|
661
|
-
}
|
|
662
|
-
tempG.remove();
|
|
663
|
-
const shift = maxLabelWidth + labelPadding;
|
|
664
|
-
this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
665
|
-
this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
666
|
-
this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
|
|
667
|
-
this.dom.svg.attr("width", shift + this.settings.svgw + 500);
|
|
668
|
-
this.shift = shift;
|
|
669
|
-
for (const tw of this.scoreTerms) {
|
|
670
|
-
if (tw.term.type != "multivalue") continue;
|
|
671
|
-
const dict = this.getPercentageDict(tw);
|
|
672
|
-
this.renderLikertBar(dict, y, 25, tw);
|
|
673
|
-
y += step;
|
|
674
|
-
}
|
|
675
|
-
y += step * 2;
|
|
676
|
-
const width = this.settings.svgw;
|
|
677
|
-
const posScale = linear().domain([0, 100]).range([shift, shift + width]);
|
|
678
|
-
const posAxisBottom = axisBottom(posScale).ticks(10).tickFormat((d) => d + "%");
|
|
679
|
-
const scaleG = this.dom.svg.append("g").attr("transform", `translate(0, ${y})`);
|
|
680
|
-
posAxisBottom(scaleG);
|
|
681
|
-
const likertLegendOrder = [
|
|
682
|
-
"I Don't Know",
|
|
683
|
-
"Do Not Know",
|
|
684
|
-
"No",
|
|
685
|
-
"Not Available",
|
|
686
|
-
"Not Applicable For My Role",
|
|
687
|
-
"Almost Never",
|
|
688
|
-
"Infrequently",
|
|
689
|
-
"Sometimes",
|
|
690
|
-
"Frequently",
|
|
691
|
-
"Almost Always"
|
|
692
|
-
];
|
|
693
|
-
const catUpperSet = new Set([...this.categories].map((c) => c.toUpperCase()));
|
|
694
|
-
const orderedCategories = likertLegendOrder.filter((c) => catUpperSet.has(c.toUpperCase()));
|
|
695
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
696
|
-
const legendG = this.dom.legendG.attr("transform", `translate(0, ${y + 50})`);
|
|
697
|
-
const rectSize = 14;
|
|
698
|
-
const rectTextGap = 5;
|
|
699
|
-
const itemGap = 12;
|
|
700
|
-
let x = 0;
|
|
701
|
-
for (const category of orderedCategories) {
|
|
702
|
-
const key = category.toUpperCase();
|
|
703
|
-
const color = colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][category];
|
|
704
|
-
const itemG = legendG.append("g").attr("transform", `translate(${x}, 0)`);
|
|
705
|
-
itemG.append("rect").attr("width", rectSize).attr("height", rectSize).attr("fill", color);
|
|
706
|
-
const label = itemG.append("text").attr("x", rectSize + rectTextGap).attr("y", rectSize / 2).attr("dominant-baseline", "central").style("font-size", "0.8em").text(category);
|
|
707
|
-
x += rectSize + rectTextGap + label.node().getBBox().width + itemGap;
|
|
708
|
-
}
|
|
709
|
-
}
|
|
710
|
-
renderYesNo() {
|
|
711
|
-
const step = 30;
|
|
712
|
-
const height = this.scoreTerms.length * step;
|
|
713
|
-
this.dom.svg.attr("height", height * 3 + 200);
|
|
714
|
-
const labelPadding = 50;
|
|
715
|
-
const tempG = this.dom.svg.append("g").style("visibility", "hidden");
|
|
716
|
-
let maxLabelWidth = 0;
|
|
717
|
-
for (const tw of this.scoreTerms) {
|
|
718
|
-
const text2 = getText(tw.term.name);
|
|
719
|
-
const tempText = tempG.append("text").style("font-size", "0.8em").text(text2);
|
|
720
|
-
const w = tempText.node().getBBox().width;
|
|
721
|
-
if (w > maxLabelWidth) maxLabelWidth = w;
|
|
722
|
-
}
|
|
723
|
-
tempG.remove();
|
|
724
|
-
const shift = maxLabelWidth + labelPadding;
|
|
725
|
-
this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
726
|
-
this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
727
|
-
this.dom.xAxisG.attr("transform", `translate(${shift}, ${this.shiftTop / 2})`);
|
|
728
|
-
this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
|
|
729
|
-
this.dom.svg.attr("width", shift + this.settings.svgw + 500);
|
|
730
|
-
this.shift = shift;
|
|
731
|
-
this.xAxisScale = linear().domain([0, 100]).range([0, this.settings.svgw]);
|
|
732
|
-
this.dom.xAxisG.call(axisTop(this.xAxisScale));
|
|
733
|
-
let y = 0;
|
|
734
|
-
let showSCBar = false;
|
|
735
|
-
for (const tw of this.scoreTerms) {
|
|
736
|
-
const percents = this.getPercentageDict(tw);
|
|
737
|
-
const scTermId = tw.term.id.replace(/^POC/, "");
|
|
738
|
-
const scTW = this.id2SCTW[this.activePlot.name][scTermId];
|
|
739
|
-
const scPercents = this.getPercentageDict(scTW);
|
|
740
|
-
const scPercentKeys = Object.keys(scPercents).filter((k) => scPercents[k] > 0).map((k) => scTW.term.values?.[k]?.label || k);
|
|
741
|
-
const scTotal = Object.values(scPercents).reduce((a, b) => a + b, 0);
|
|
742
|
-
showSCBar = scTotal > 1;
|
|
743
|
-
this.renderYesNoBar(percents, y, step, scTotal == 1 ? scPercentKeys : []);
|
|
744
|
-
if (showSCBar) {
|
|
745
|
-
y += step + 10;
|
|
746
|
-
this.renderYesNoBar(scPercents, y, step, []);
|
|
747
|
-
this.dom.mainG.append("text").text("SC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", y + step * 0.6);
|
|
748
|
-
}
|
|
749
|
-
this.dom.mainG.append("text").text("POC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", showSCBar ? y - step + 0.35 * step : y + step * 0.6);
|
|
750
|
-
this.dom.mainG.append("text").attr("x", -this.shift).attr("y", showSCBar ? y : y + step / 2).text(getText(tw.term.name)).attr("font-size", "0.8em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
|
|
751
|
-
y += step + 40;
|
|
752
|
-
}
|
|
753
|
-
this.renderLines(y - 20);
|
|
754
|
-
if (showSCBar) this.dom.legendG.attr("transform", `translate(${550}, ${30 + this.settings.svgh})`);
|
|
755
|
-
else this.dom.legendG.attr("transform", `translate(${550}, ${this.settings.svgh * 0.8})`);
|
|
756
|
-
let x = 0;
|
|
757
|
-
for (const category of this.activePlot.categories) {
|
|
758
|
-
x += this.drawLegendRect(x, 0, category.name, this.dom.legendG, true);
|
|
759
|
-
}
|
|
760
|
-
let text = this.dom.legendG.append("text").attr("x", x + 80).attr("y", 18);
|
|
761
|
-
text.append("tspan").style("font-weight", "bold").text("SC:");
|
|
762
|
-
text.append("tspan").text("Site Coordinator");
|
|
763
|
-
text = this.dom.legendG.append("text").attr("x", x + 250).attr("y", 18);
|
|
764
|
-
text.append("tspan").style("font-weight", "bold").text("POC:");
|
|
765
|
-
text.append("tspan").text("Point of Care Staff");
|
|
766
|
-
}
|
|
767
|
-
onMouseOver(event) {
|
|
768
|
-
if (this.isImpressionDomain) {
|
|
769
|
-
const target = event.target;
|
|
770
|
-
const d = target.__data__;
|
|
771
|
-
if (d?.tip) {
|
|
772
|
-
const menu = this.tip.clear();
|
|
773
|
-
menu.d.text(d.tip);
|
|
774
|
-
menu.show(event.clientX, event.clientY, true, true);
|
|
775
|
-
if (d.on) for (const k in d.on) target.setAttribute(k, d.on[k]);
|
|
776
|
-
if (d.growR && !d._grown) {
|
|
777
|
-
d._grown = true;
|
|
778
|
-
select_default(target).interrupt().transition().duration(150).attr("r", d.growR);
|
|
779
|
-
}
|
|
780
|
-
} else this.onMouseOut(event);
|
|
781
|
-
return;
|
|
782
|
-
}
|
|
783
|
-
if (event.target.tagName == "rect") {
|
|
784
|
-
const path = event.target;
|
|
785
|
-
const d = path.__data__;
|
|
786
|
-
if (!d?.value) return this.onMouseOut(event);
|
|
787
|
-
const menu = this.tip.clear();
|
|
788
|
-
const percent = roundValueAuto(d.value, true, 1);
|
|
789
|
-
const row = menu.d.append("div").style("display", "flex").style("align-items", "center").style("gap", "5px");
|
|
790
|
-
if (d.color)
|
|
791
|
-
row.append("div").style("width", "12px").style("height", "12px").style("background-color", d.color).style("flex-shrink", "0");
|
|
792
|
-
row.append("span").text(`${d.key}: ${percent}%`);
|
|
793
|
-
menu.show(event.clientX, event.clientY, true, true);
|
|
794
|
-
} else this.onMouseOut(event);
|
|
795
|
-
}
|
|
796
|
-
onMouseOut(event) {
|
|
797
|
-
if (this.isImpressionDomain) {
|
|
798
|
-
const target = event?.target;
|
|
799
|
-
const d = target?.__data__;
|
|
800
|
-
if (d?.off) for (const k in d.off) target.setAttribute(k, d.off[k]);
|
|
801
|
-
if (d?._grown) {
|
|
802
|
-
d._grown = false;
|
|
803
|
-
select_default(target).interrupt().transition().duration(150).attr("r", d.baseR);
|
|
804
|
-
}
|
|
805
|
-
}
|
|
806
|
-
this.tip.hide();
|
|
807
|
-
}
|
|
808
|
-
getColor(key) {
|
|
809
|
-
return key == "Yes" ? this.activePlot.color : key == "No" ? "#aaa" : `url(#${this.id}_diagonalHatch)`;
|
|
810
|
-
}
|
|
811
|
-
renderLikertBar(dict, y, height, tw) {
|
|
812
|
-
const itemG = this.dom.mainG.append("g");
|
|
813
|
-
let total = 0;
|
|
814
|
-
for (const key in dict) total += dict[key];
|
|
815
|
-
const key2num = {};
|
|
816
|
-
for (const key in tw.term.values) {
|
|
817
|
-
const category = tw.term.values[key].label.toUpperCase();
|
|
818
|
-
key2num[category] = Number(key);
|
|
819
|
-
}
|
|
820
|
-
let x = 0;
|
|
821
|
-
const keys = Object.keys(dict).sort((a, b) => key2num[a.toUpperCase()] - key2num[b.toUpperCase()]);
|
|
822
|
-
for (const key of keys) {
|
|
823
|
-
this.categories.add(key);
|
|
824
|
-
const width = this.renderCategory(key, dict, itemG, x, height, total);
|
|
825
|
-
x += width;
|
|
826
|
-
}
|
|
827
|
-
const text = getText(tw.term.details || tw.term.name);
|
|
828
|
-
const textG = this.dom.svg.append("g").attr("transform", `translate(0, ${y + this.shiftTop})`);
|
|
829
|
-
textG.append("text").text(text).attr("y", height * 2 / 3).style("font-size", "0.85em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
|
|
830
|
-
itemG.attr("transform", `translate(0, ${y})`);
|
|
831
|
-
}
|
|
832
|
-
renderCategory(category, dict, itemG, x, height, total, showPercent = false) {
|
|
833
|
-
const key = category.toUpperCase();
|
|
834
|
-
const module = this.module;
|
|
835
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
836
|
-
const color = colorMap[module][key] || colorMap["*"][key];
|
|
837
|
-
const entry = Object.entries(dict).find((k) => k[0].toUpperCase() == key);
|
|
838
|
-
if (!entry) return 0;
|
|
839
|
-
const value = entry[1];
|
|
840
|
-
this.categories.add(category);
|
|
841
|
-
const percent = value / total * 100;
|
|
842
|
-
const width = percent / 100 * this.settings.svgw;
|
|
843
|
-
itemG.append("rect").attr("x", x).attr("width", width).attr("height", height).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("fill", color).datum({ key: category, value: percent, color }).on("mouseover", (event) => this.onMouseOver(event));
|
|
844
|
-
if (showPercent)
|
|
845
|
-
itemG.append("text").text(`${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.8em").attr("x", x + width + 10).attr("y", height * 0.6);
|
|
846
|
-
return width;
|
|
847
|
-
}
|
|
848
|
-
renderYesNoBar(percents, y, height, scPercentKeys) {
|
|
849
|
-
const percentsOrdered = Object.keys(percents).sort((a, b) => -a.localeCompare(b));
|
|
850
|
-
const total = Object.values(percents).reduce((a, b) => a + b, 0);
|
|
851
|
-
let x = 0;
|
|
852
|
-
for (const key of percentsOrdered) {
|
|
853
|
-
const color = this.getColor(key);
|
|
854
|
-
const value = percents[key];
|
|
855
|
-
const width = value / total * this.settings.svgw;
|
|
856
|
-
const percent = value / total * 100;
|
|
857
|
-
this.dom.mainG.append("rect").attr("x", x).attr("y", y).attr("width", width).attr("height", height).attr("stroke", "gray").attr("fill", color).datum({ key, value: percent, color });
|
|
858
|
-
if (scPercentKeys.includes(key)) {
|
|
859
|
-
const arrowX = x + width / 2;
|
|
860
|
-
const arrowSize = 6;
|
|
861
|
-
this.dom.mainG.append("polygon").attr(
|
|
862
|
-
"points",
|
|
863
|
-
`${arrowX},${y} ${arrowX - arrowSize},${y - arrowSize * 1.5} ${arrowX + arrowSize},${y - arrowSize * 1.5}`
|
|
864
|
-
).attr("fill", "#c0392b").attr("pointer-events", "none");
|
|
865
|
-
this.dom.mainG.append("text").text(`SC ${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.7em").style("fill", "#c0392b").attr("font-weight", "bold").attr("text-anchor", "middle").attr("x", arrowX).attr("y", y - arrowSize * 1.5 - 3).attr("pointer-events", "none");
|
|
866
|
-
}
|
|
867
|
-
x += width;
|
|
868
|
-
}
|
|
869
|
-
}
|
|
870
|
-
renderLines(y) {
|
|
871
|
-
const width = this.settings.svgw;
|
|
872
|
-
const color = "lightgray";
|
|
873
|
-
const opacity = 0.5;
|
|
874
|
-
const bins = 4;
|
|
875
|
-
const size = width / bins;
|
|
876
|
-
let x;
|
|
877
|
-
const gridG = this.dom.gridG;
|
|
878
|
-
for (let i = 0; i <= bins; i++) {
|
|
879
|
-
x = i * size;
|
|
880
|
-
gridG.append("line").attr("x1", x).attr("x2", x).attr("y1", 0).attr("y2", y).style("stroke", color).style("stroke-opacity", opacity).style("stroke-dasharray", "5, 5");
|
|
881
|
-
}
|
|
882
|
-
}
|
|
883
|
-
drawLegendRect(x, y, text, legendG, isYesNo = false) {
|
|
884
|
-
const key = text.toUpperCase();
|
|
885
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
886
|
-
const color = isYesNo ? this.getColor(text) : colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][text];
|
|
887
|
-
const size = 20;
|
|
888
|
-
const gap = 15;
|
|
889
|
-
const itemG = legendG.append("g").attr("transform", `translate(${x}, ${y})`);
|
|
890
|
-
itemG.append("rect").attr("x", 0).attr("y", 0).attr("width", size).attr("height", size).attr("fill", color).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("pointer-events", "none");
|
|
891
|
-
const label = itemG.append("text").attr("transform", `translate(${size + gap}, ${size / 2})`).attr("dominant-baseline", "central").style("font-size", "0.85em").text(text);
|
|
892
|
-
const labelWidth = label.node().getBBox().width;
|
|
893
|
-
return size + gap + labelWidth + gap;
|
|
894
|
-
}
|
|
895
|
-
showText(event, text, size = 110) {
|
|
896
|
-
if (text.length <= size) return;
|
|
897
|
-
const menu = this.tip.clear();
|
|
898
|
-
menu.d.style("padding", "5px").text(text);
|
|
899
|
-
menu.showunder(event.target);
|
|
900
|
-
}
|
|
901
|
-
getPercentageDict(tw) {
|
|
902
|
-
return this.data.term2Score[tw.term.id];
|
|
903
|
-
}
|
|
904
|
-
};
|
|
905
|
-
async function getPlotConfig(opts, app, _activeCohort) {
|
|
906
|
-
const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
|
|
907
|
-
const formsConfig = await getProfilePlotConfig(activeCohort, app, opts);
|
|
908
|
-
let config = formsConfig;
|
|
909
|
-
config.settings = getDefaultProfileFormsSettings();
|
|
910
|
-
config.headerTitle = "Templates: Visualization tools to provide insights and assist in leveraging data";
|
|
911
|
-
config = copyMerge(structuredClone(config), opts);
|
|
912
|
-
for (const plot of config.options) {
|
|
913
|
-
if (plot.terms) await fillTwLst(plot.terms, app.vocabApi);
|
|
914
|
-
}
|
|
915
|
-
return config;
|
|
916
|
-
}
|
|
917
|
-
function getDefaultProfileFormsSettings() {
|
|
918
|
-
const settings = {
|
|
919
|
-
controls: {
|
|
920
|
-
isOpen: false
|
|
921
|
-
},
|
|
922
|
-
profileForms: { svgw: 420, svgh: 480 }
|
|
923
|
-
};
|
|
924
|
-
const profilePlotSettings = getDefaultProfilePlotSettings();
|
|
925
|
-
settings.profileForms = copyMerge(settings.profileForms, profilePlotSettings);
|
|
926
|
-
return settings;
|
|
927
|
-
}
|
|
928
|
-
var profileFormsInit = getCompInit(profileForms);
|
|
929
|
-
var componentInit = profileFormsInit;
|
|
930
|
-
function getText(name, size = 110) {
|
|
931
|
-
if (name.length > size) name = name.slice(0, size) + "...";
|
|
932
|
-
return name;
|
|
933
|
-
}
|
|
934
|
-
export {
|
|
935
|
-
componentInit,
|
|
936
|
-
getDefaultProfileFormsSettings,
|
|
937
|
-
getPlotConfig,
|
|
938
|
-
profileForms,
|
|
939
|
-
profileFormsInit
|
|
940
|
-
};
|
|
941
|
-
//# sourceMappingURL=profileForms-CUSUGTPC.js.map
|