@sjcrh/proteinpaint-client 2.209.0 → 2.210.0

package/dist/tvs.dt-H7YYR4EB.js

@@ -1,34 +0,0 @@
-import {
-  getDtTermValues,
-  handler
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  getDtTermValues,
-  handler
-};
-//# sourceMappingURL=tvs.dt-H7YYR4EB.js.map

package/dist/tvs.dtcnv.categorical-IPJTKGMF.js

@@ -1,35 +0,0 @@
-import {
-  handler
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.dtcnv.categorical.js
-var handler2 = Object.assign({}, handler, { type: "dtcnv" });
-export {
-  handler2 as handler
-};
-//# sourceMappingURL=tvs.dtcnv.categorical-IPJTKGMF.js.map

package/dist/tvs.dtcnv.continuous-XY5XZ4GH.js

@@ -1,67 +0,0 @@
-import {
-  handler,
-  renderCnvConfig
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.dtcnv.continuous.js
-var handler2 = Object.assign({}, handler, { type: "dtcnv", fillMenu, get_pill_label });
-function fillMenu(self, div, tvs) {
-  const dscnv = self.opts.vocabApi.termdbConfig.queries?.cnv;
-  if (!dscnv) throw "cnv query is missing";
-  const cnvDefault = dscnv.cnvCutoffsByGene?.[tvs.term.parentTerm.name] || {
-    cnvMaxLength: dscnv.cnvMaxLength,
-    cnvGainCutoff: dscnv.cnvGainCutoff,
-    cnvLossCutoff: dscnv.cnvLossCutoff
-  };
-  const cnv = Object.assign({}, cnvDefault, tvs);
-  const arg = {
-    holder: div,
-    cnvGainCutoff: cnv.cnvGainCutoff,
-    cnvLossCutoff: cnv.cnvLossCutoff,
-    cnvMaxLength: cnv.cnvMaxLength,
-    cnvWT: cnv.cnvWT,
-    genotypeToggle: true,
-    fractionOverlap: cnv.fractionOverlap,
-    showOverlap: true,
-    callback: (config) => {
-      const new_tvs = structuredClone(tvs);
-      Object.assign(new_tvs, config);
-      new_tvs.continuousCnv = true;
-      self.dom.tip.hide();
-      self.opts.callback(new_tvs);
-    }
-  };
-  renderCnvConfig(arg);
-}
-function get_pill_label(tvs) {
-  return { txt: tvs.cnvWT ? "Wildtype" : "Altered" };
-}
-export {
-  handler2 as handler
-};
-//# sourceMappingURL=tvs.dtcnv.continuous-XY5XZ4GH.js.map

package/dist/tvs.dtfusion-VFCBMXRM.js

@@ -1,35 +0,0 @@
-import {
-  handler
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.dtfusion.js
-var handler2 = Object.assign({}, handler, { type: "dtfusion" });
-export {
-  handler2 as handler
-};
-//# sourceMappingURL=tvs.dtfusion-VFCBMXRM.js.map

package/dist/tvs.dtitd-RZVW6FTR.js

@@ -1,35 +0,0 @@
-import {
-  handler
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.dtitd.js
-var handler2 = Object.assign({}, handler, { type: "dtitd" });
-export {
-  handler2 as handler
-};
-//# sourceMappingURL=tvs.dtitd-RZVW6FTR.js.map

package/dist/tvs.dtsnvindel-IDPJWSGC.js

@@ -1,35 +0,0 @@
-import {
-  handler
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.dtsnvindel.js
-var handler2 = Object.assign({}, handler, { type: "dtsnvindel" });
-export {
-  handler2 as handler
-};
-//# sourceMappingURL=tvs.dtsnvindel-IDPJWSGC.js.map

package/dist/tvs.dtsv-QERP756F.js

@@ -1,35 +0,0 @@
-import {
-  handler
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.dtsv.js
-var handler2 = Object.assign({}, handler, { type: "dtsv" });
-export {
-  handler2 as handler
-};
-//# sourceMappingURL=tvs.dtsv-QERP756F.js.map

package/dist/tvs.numeric-22AHXO5K.js

@@ -1,20 +0,0 @@
-import {
-  format_val_text,
-  handler
-} from "./chunk-SYPSS3JQ.js";
-import "./chunk-A7OWXDYA.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  format_val_text,
-  handler
-};
-//# sourceMappingURL=tvs.numeric-22AHXO5K.js.map

package/dist/tvs.samplelst-6KNDHBIU.js

@@ -1,98 +0,0 @@
-import {
-  renderTable
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.samplelst.js
-var handler = {
-  term_name_gen,
-  get_pill_label,
-  fillMenu,
-  getSelectRemovePos,
-  getNegateText(self) {
-    return self.tvs.isnot ? "NOT IN" : "IN";
-  }
-};
-async function fillMenu(self, div, tvs) {
-  tvs = JSON.parse(JSON.stringify(tvs));
-  div.selectAll("*").remove();
-  div = div.append("div");
-  div.style("font-size", "0.8em");
-  for (const field in tvs.term.values) {
-    if (tvs.term.values[field].in === false) continue;
-    addTable(div, tvs, field);
-  }
-  div.append("div").style("padding", "6px").append("button").attr("data-testid", "sjpp-tvs-samplelst-apply").text("Apply").on("click", () => {
-    for (const field in tvs.term.values) {
-      const value = tvs.term.values[field];
-      value.list = value.list.filter((s) => !("checked" in s) || s.checked);
-    }
-    self.opts.callback(tvs);
-  });
-}
-function addTable(div, tvs, field) {
-  div.style("padding", "6px").append("div").style("margin", "10px").style("font-size", "0.8rem").html(`<b> ${field}</b>.`);
-  const value = tvs.term.values[field];
-  const rows = [];
-  for (const sample of value.list) rows.push([{ value: sample.sample }]);
-  const columns = [{ label: "Sample" }];
-  renderTable({
-    rows,
-    columns,
-    div,
-    maxWidth: "30vw",
-    maxHeight: "40vh",
-    noButtonCallback: (index, node) => {
-      value.list[index].checked = node.checked;
-    },
-    striped: false,
-    showHeader: false,
-    selectAll: true
-  });
-}
-function getSelectRemovePos(j) {
-  return j;
-}
-function term_name_gen() {
-  return "Samples";
-}
-function get_pill_label(tvs) {
-  return { txt: getGroupLabel(tvs.term) };
-}
-function getGroupLabel(term) {
-  let n = 0;
-  for (const item in term.values) {
-    if (term.values[item].in === false) continue;
-    n += term.values[item].list.length;
-  }
-  return `${term.name} n=${n}`;
-}
-export {
-  addTable,
-  handler
-};
-//# sourceMappingURL=tvs.samplelst-6KNDHBIU.js.map

package/dist/tvs.termCollection-GWPJK3NE.js

@@ -1,124 +0,0 @@
-import {
-  format_val_text
-} from "./chunk-SYPSS3JQ.js";
-import "./chunk-A7OWXDYA.js";
-import {
-  renderFractionSelection
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import {
-  getTvsDenominators,
-  validateTermCollectionTvs
-} from "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import {
-  NumericRangeInput
-} from "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// filter/tvs.termCollection.ts
-var handler = {
-  type: "termCollection",
-  term_name_gen,
-  get_pill_label,
-  getSelectRemovePos,
-  fillMenu,
-  setTvsDefaults
-};
-function setTvsDefaults(tvs) {
-  if (!tvs.ranges) tvs.ranges = [];
-}
-async function fillMenu(self, div, tvs) {
-  tvs = structuredClone(tvs);
-  div.selectAll("*").remove();
-  div = div.append("div").style("font-size", "0.8em");
-  let details = self.opts.vocabApi.termdbConfig.termCollections?.find((c) => c.name === tvs.term.name);
-  if (!details) {
-    if (tvs.term.isCustom && tvs.term.termlst?.length) {
-      details = { termlst: tvs.term.termlst, type: tvs.term.memberType || "numeric" };
-    } else {
-      throw new Error(`No termCollection found for name=${tvs.term.name}`);
-    }
-  }
-  if (details.type !== "numeric") throw new Error("filter only supports numeric term collection");
-  const rangeInput = renderRangeInput(div, tvs, applyRange);
-  const validateSelection = await addFilterTable({ holder: div, tvs, details, vocabApi: self.opts.vocabApi });
-  async function applyRange(tvs2) {
-    if (!validateSelection()) return;
-    self.dom.tip.hide();
-    self.opts.callback({ term: tvs2.term, ranges: [rangeInput.getRange()] });
-  }
-}
-function renderRangeInput(div, tvs, applyRange) {
-  const savedRange = tvs.ranges?.[0] || tvs.term.range;
-  const range = savedRange || { start: 0.1, startinclusive: false, stopunbounded: true };
-  const num_div = div.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px");
-  num_div.append("span").text("Fraction 0 to 1");
-  range.min = 0;
-  range.max = 1;
-  const rangeInput = new NumericRangeInput(num_div, range, () => {
-  });
-  num_div.append("button").text("Apply").on("click", () => {
-    try {
-      rangeInput.parseRange();
-    } catch (e) {
-      return window.alert(e);
-    }
-    applyRange(tvs);
-  });
-  return rangeInput;
-}
-async function addFilterTable(opts) {
-  const term = opts.tvs.term;
-  term.denominators = getTvsDenominators(term);
-  if (!term.numerators?.length) term.numerators = term.denominators.slice(0, 1);
-  term.termlst = opts.details.termlst;
-  renderFractionSelection({
-    holder: opts.holder,
-    selection: term,
-    propsByTermId: term.propsByTermId
-  });
-  return () => {
-    try {
-      validateTermCollectionTvs(term);
-      return true;
-    } catch (e) {
-      window.alert(e.message);
-      return false;
-    }
-  };
-}
-function getSelectRemovePos(j) {
-  return j;
-}
-function term_name_gen(d) {
-  return `Fraction(${d.term.numerators.join("+")})`;
-}
-function get_pill_label(tvs) {
-  return { txt: format_val_text(tvs.ranges[0], tvs.term) };
-}
-export {
-  addFilterTable,
-  handler
-};
-//# sourceMappingURL=tvs.termCollection-GWPJK3NE.js.map

package/dist/vocabulary-C5FIZMPQ.js

@@ -1,36 +0,0 @@
-import {
-  getVocabFromSamplesArray,
-  q_to_param,
-  vocabInit
-} from "./chunk-C3HEDQPT.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-B6UXFX73.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-3FEP6B5T.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-OBDIJ4QS.js";
-import "./chunk-6FG6JFZP.js";
-import "./chunk-3XBG5HIV.js";
-import "./chunk-SB36AUG7.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  getVocabFromSamplesArray,
-  q_to_param,
-  vocabInit
-};
-//# sourceMappingURL=vocabulary-C5FIZMPQ.js.map