@sjcrh/proteinpaint-client 2.209.0 → 2.210.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-43QBND66.js +1367 -0
- package/dist/AggMatrixInput-X7NGFUHH.js +406 -0
- package/dist/AggregateMatrix-M4HRI4PX.js +41 -0
- package/dist/AppHeader-QBRQN6PM.js +830 -0
- package/dist/BoxPlot-V6SPSEQ2.js +1211 -0
- package/dist/CorrelationVolcano-UFPCYC77.js +617 -0
- package/dist/Cuminc-KXGXGLKZ.js +1219 -0
- package/dist/DE-K2YXHOOW.js +89 -0
- package/dist/DEinput-O6LBFAAH.js +501 -0
- package/dist/DEinput-O6LBFAAH.js.map +7 -0
- package/dist/DM-C7VN3RWB.js +90 -0
- package/dist/DifferentialAnalysis-A2BU4WB3.js +239 -0
- package/dist/Disco-HECQVKXG.js +3389 -0
- package/dist/Disco.UI-XF2GEKRW.js +243 -0
- package/dist/DmrPlot-TVXVXOHL.js +362 -0
- package/dist/GB-66ZGJ5ST.js +1428 -0
- package/dist/GSEA-Z4YPI4HY.js +875 -0
- package/dist/GeneExpInput-VBIZZV27.js +42 -0
- package/dist/Geomap-UIIOLRFA.js +84 -0
- package/dist/HicApp-73ESVNBA.js +2245 -0
- package/dist/IDCViewer-RBYN5A4P.js +10812 -0
- package/dist/NumBinaryEditor-DJLSNSLE.js +279 -0
- package/dist/NumBinaryEditor.unit.spec-LCJHL3XM.js +312 -0
- package/dist/NumContEditor-SVLDJ2ML.js +105 -0
- package/dist/NumContEditor.unit.spec-JDMSK4HY.js +164 -0
- package/dist/NumCustomBinEditor-BI63AH3R.js +33 -0
- package/dist/NumCustomBinEditor.unit.spec-5433G7Y2.js +397 -0
- package/dist/NumDiscreteEditor-LEZTGXAV.js +170 -0
- package/dist/NumDiscreteEditor.unit.spec-5OEORHJ4.js +233 -0
- package/dist/NumRegularBinEditor-EXWHIWPM.js +33 -0
- package/dist/NumRegularBinEditor.unit.spec-QY25Z2TT.js +278 -0
- package/dist/NumSplineEditor-XPPMYYAD.js +210 -0
- package/dist/NumSplineEditor.unit.spec-GOGBKWMN.js +224 -0
- package/dist/NumericDensity-RKY2IQ72.js +33 -0
- package/dist/NumericDensity.unit.spec-5ZM6ICXM.js +418 -0
- package/dist/NumericHandler-FXF3M5M3.js +34 -0
- package/dist/NumericHandler.unit.spec-M2OQTBJX.js +214 -0
- package/dist/ProteomeInput-TMZ3THRL.js +388 -0
- package/dist/Regression-GQGAATHG.js +1416 -0
- package/dist/RunChart2-7GNDWRKC.js +749 -0
- package/dist/SC-R2I2EMHA.js +1183 -0
- package/dist/Violin-GKKEB55L.js +1081 -0
- package/dist/Volcano-HRG5EFWH.js +2443 -0
- package/dist/Wsi-OHRCGYYD.js +629 -0
- package/dist/adSandbox-H56B25WR.js +33 -0
- package/dist/animatedBubbleChart-7SXFHU4J.js +547 -0
- package/dist/app-22JCSULA.js +42 -0
- package/dist/app-RGZJB6LN.js +32 -0
- package/dist/app.js +12 -12
- package/dist/bam-HA65TRGX.js +876 -0
- package/dist/barchart-6XO75OMA.js +42 -0
- package/dist/barchart2-6E5BIRHD.js +309 -0
- package/dist/block-43KNTXZ5.js +6250 -0
- package/dist/block.init-TPU5QIPA.js +33 -0
- package/dist/block.mds.expressionrank-QZDRFXCH.js +354 -0
- package/dist/block.mds.geneboxplot-64QVBK5Q.js +823 -0
- package/dist/block.mds.junction-I4J6VXNT.js +1539 -0
- package/dist/block.mds.svcnv-GDQMSQFF.js +6796 -0
- package/dist/block.svg-2MZFT5QP.js +159 -0
- package/dist/block.tk.aicheck-2MKHF6LX.js +278 -0
- package/dist/block.tk.ase-CLYGKFTS.js +360 -0
- package/dist/block.tk.bam-XTR4QA5Z.js +1901 -0
- package/dist/block.tk.bedgraphdot-A2P2CXRU.js +379 -0
- package/dist/block.tk.bigwig.ui-YZH6JXEO.js +206 -0
- package/dist/block.tk.hicstraw-QBK5VWGU.js +818 -0
- package/dist/block.tk.junction-5DEVBA7G.js +2358 -0
- package/dist/block.tk.junction.textmatrixui-7TTQMO6W.js +194 -0
- package/dist/block.tk.ld-PRIVUPKL.js +94 -0
- package/dist/block.tk.menu-JGBRFSS3.js +1024 -0
- package/dist/block.tk.pgv-KQJCJMVD.js +938 -0
- package/dist/brainImaging-4SLVJ2HV.js +555 -0
- package/dist/brainRegions-BDIVM2SG.js +217 -0
- package/dist/bubbleHeatmap-ORKFJNEQ.js +378 -0
- package/dist/cellTypeBubbleHeatmap-VOHLI4P7.js +278 -0
- package/dist/chunk-26N3B2JO.js +194 -0
- package/dist/chunk-2HNJF5ZI.js +240 -0
- package/dist/chunk-2LNGHIOC.js +281 -0
- package/dist/chunk-3SCQGODD.js +274 -0
- package/dist/chunk-47STLK7K.js +518 -0
- package/dist/chunk-4XYQG3XU.js +276 -0
- package/dist/chunk-53XNEXR6.js +34 -0
- package/dist/chunk-55FABQU2.js +24955 -0
- package/dist/chunk-55FABQU2.js.map +7 -0
- package/dist/chunk-5UB5H7A3.js +123 -0
- package/dist/chunk-6FYQYTV6.js +141 -0
- package/dist/chunk-6RP6CR4Q.js +182 -0
- package/dist/chunk-A5D37SIL.js +103 -0
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- package/dist/chunk-IAB2PRIH.js +396 -0
- package/dist/chunk-IAB2PRIH.js.map +7 -0
- package/dist/chunk-IBT6WRY6.js +692 -0
- package/dist/chunk-IJ7AIDEO.js +302 -0
- package/dist/chunk-JBFVJHZN.js +1233 -0
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- package/dist/chunk-K7RW5TPU.js +4375 -0
- package/dist/chunk-KIAMLQ7S.js +424 -0
- package/dist/chunk-KIAMLQ7S.js.map +7 -0
- package/dist/chunk-LBCIXRI2.js +49 -0
- package/dist/chunk-MNXL2UV5.js +98 -0
- package/dist/chunk-NI5CVN43.js +203 -0
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- package/dist/chunk-NULFGPE3.js +158 -0
- package/dist/chunk-OUIXGM3K.js +299 -0
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- package/dist/chunk-PU5FQWAY.js +55 -0
- package/dist/chunk-PZ2OSHBF.js +56 -0
- package/dist/chunk-QBNDPW7O.js +5071 -0
- package/dist/chunk-R5PKBL7V.js +80 -0
- package/dist/chunk-RFSOP75Z.js +1988 -0
- package/dist/chunk-RFSOP75Z.js.map +7 -0
- package/dist/chunk-RI65SIN3.js +626 -0
- package/dist/chunk-RPGLLO4T.js +2676 -0
- package/dist/chunk-RXNZK7MF.js +134 -0
- package/dist/chunk-S2ICJ3RZ.js +550 -0
- package/dist/chunk-SFHG6H2D.js +129 -0
- package/dist/chunk-TQ2DVEQO.js +783 -0
- package/dist/chunk-U6BJ4ZNU.js +176 -0
- package/dist/chunk-UXD6G6G4.js +178 -0
- package/dist/chunk-VA57CUC7.js +2146 -0
- package/dist/chunk-VH5W6ODW.js +294 -0
- package/dist/chunk-VROF55EH.js +255 -0
- package/dist/chunk-VWA7BYSV.js +217 -0
- package/dist/chunk-X37BRSGS.js +102 -0
- package/dist/chunk-XQYDXA47.js +562 -0
- package/dist/chunk-XXPUZVS4.js +237 -0
- package/dist/chunk-Y7V5AIUH.js +468 -0
- package/dist/chunk-YBNIOGUE.js +243 -0
- package/dist/chunk-YEYMNF7V.js +2327 -0
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- package/dist/chunk-ZG2HCGAO.js +2784 -0
- package/dist/chunk-ZZN7ZD7J.js +54 -0
- package/dist/cohort-6OCRQQ2S.js +70 -0
- package/dist/condition-SZVXH3VU.js +327 -0
- package/dist/controls-MO6ZND76.js +34 -0
- package/dist/controls.config-P4MSTGL4.js +34 -0
- package/dist/correlation-NMI3CM3T.js +95 -0
- package/dist/customdata.inputui-VCHSCA65.js +284 -0
- package/dist/dataDownload-VQHOTQ5D.js +329 -0
- package/dist/databrowser.ui-ZFOCAG32.js +425 -0
- package/dist/dictionary-S5YCFUWH.js +113 -0
- package/dist/dnaMethylation-MQZLZRGT.js +33 -0
- package/dist/dnaMethylation.integration.spec-H546EBUO.js +198 -0
- package/dist/dofetch-QZIYSC7H.js +48 -0
- package/dist/e2pca-XOXOS3PN.js +344 -0
- package/dist/ep-U6KRL7FR.js +1249 -0
- package/dist/expclust.gdc.spec-HCK65C63.js +302 -0
- package/dist/facet-DCC25KJO.js +519 -0
- package/dist/gb-TIFWFD4Y.js +81 -0
- package/dist/geneExpClustering-6DQEOTOY.js +244 -0
- package/dist/geneExpression-EASRAN6B.js +310 -0
- package/dist/geneExpression-G4YMDCBH.js +33 -0
- package/dist/geneExpression.unit.spec-XVEJYMPX.js +128 -0
- package/dist/geneORA-6UBS5GSC.js +273 -0
- package/dist/geneRanking-UXXYWHNB.js +548 -0
- package/dist/geneVariant-SZRJOXVC.js +289 -0
- package/dist/geneVariant-TKFKARZK.js +36 -0
- package/dist/geneVariant.integration.spec-PXMAYJN3.js +503 -0
- package/dist/geneVariant.integration.spec-PXMAYJN3.js.map +7 -0
- package/dist/genefusion.ui-TJLYXSVL.js +303 -0
- package/dist/geneset-YTBDLEIH.js +203 -0
- package/dist/genomeBrowser.spec-ZO4LFIXE.js +276 -0
- package/dist/grin2-FC4VYU54.js +949 -0
- package/dist/grin2-LIFKBMVK.js +70 -0
- package/dist/hierCluster-56EGAPOR.js +59 -0
- package/dist/hierCluster-DR5NWCXA.js +55 -0
- package/dist/hierCluster.config-NACE3FH2.js +36 -0
- package/dist/hierCluster.integration.spec-PEEXPAS6.js +483 -0
- package/dist/hierCluster.interactivity-OCBGLUJM.js +49 -0
- package/dist/hierCluster.renderers-JNQUSAP4.js +19 -0
- package/dist/imagePlot-GR4JNUGG.js +156 -0
- package/dist/importPlot-4R4BSPVD.js +8 -0
- package/dist/isoformExpression-ST5ZW2NE.js +35 -0
- package/dist/isoformExpression.unit.spec-PPFC5Z7N.js +237 -0
- package/dist/junction-7AKZHOHV.js +36 -0
- package/dist/junction.unit.spec-SZUJXRQ2.js +182 -0
- package/dist/launch.adhoc-RWJQUOJ6.js +37 -0
- package/dist/leftlabel.sample-WRHLVQAQ.js +258 -0
- package/dist/lollipop-ZZWXTM23.js +166 -0
- package/dist/maf-N4XPZTQU.js +455 -0
- package/dist/maftimeline-2FBS6RWS.js +587 -0
- package/dist/matrix-5KEQPB5H.js +59 -0
- package/dist/matrix-RJUNXB5N.js +54 -0
- package/dist/matrix.cells-WXTPOJYB.js +26 -0
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- package/dist/matrix.data-3PQ73GVJ.js +23 -0
- package/dist/matrix.groups-U6CKS6WW.js +26 -0
- package/dist/matrix.integration.spec-T53PMVHC.js +3160 -0
- package/dist/matrix.interactivity-3LDZV3F7.js +37 -0
- package/dist/matrix.layout-MINLYQCA.js +39 -0
- package/dist/matrix.legend-6GSDFZHS.js +20 -0
- package/dist/matrix.renderers-5BKOXDE3.js +34 -0
- package/dist/matrix.serieses-6FCFIFAQ.js +19 -0
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- package/dist/matrix.unit.spec-TUCKPE26.js +150 -0
- package/dist/mavb-GWSNRBLM.js +727 -0
- package/dist/mds.fimo-OMAQRSMW.js +513 -0
- package/dist/mds.samplescatterplot-4UW3CC45.js +1545 -0
- package/dist/mds.survivalplot-2CJYJBD2.js +477 -0
- package/dist/multivalue-G44MHEYI.js +83 -0
- package/dist/numericDictTermCluster-5BDRGVQG.js +63 -0
- package/dist/oncomatrix-ZTVO23ZH.js +290 -0
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- package/dist/plot.app-4ANKPSNP.js +36 -0
- package/dist/plot.barplot-BMGDNZRA.js +97 -0
- package/dist/plot.boxplot-GMLQCDP6.js +146 -0
- package/dist/plot.brainImaging-RZXX3NUZ.js +51 -0
- package/dist/plot.disco-3MD4J4C7.js +99 -0
- package/dist/plot.ssgq-ZC4UYKOT.js +134 -0
- package/dist/plot.vaf2cov-4DHFMYQV.js +253 -0
- package/dist/polar2-TMB5EITR.js +232 -0
- package/dist/profileForms-GD7BIOOD.js +941 -0
- package/dist/profilePlot-CZLK5E74.js +49 -0
- package/dist/proteinView-FEEEXLKT.js +1357 -0
- package/dist/proteomeCohortCompare-NVLJ2FXX.js +912 -0
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- package/dist/spliceevent.a53ss.diagram-C32IEFMU.js +146 -0
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- package/dist/summarizeMutationDiagnosis-LGCINAGG.js +35 -0
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- /package/dist/{studyCatalog-RINIZ277.js.map → studyCatalog-UHFUT2CJ.js.map} +0 -0
- /package/dist/{summarizeCnvGeneexp-ZQFNPR65.js.map → summarizeCnvGeneexp-OVZO6KIB.js.map} +0 -0
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getDefaultProfilePlotSettings,
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getProfilePlotConfig,
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makeChartBtnMenu,
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profilePlot
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renderTable
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// plots/profile/radarFacility2.ts
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var ProfileRadarFacility2 = class extends profilePlot {
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static {
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this.type = "profileRadarFacility2";
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}
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constructor(opts) {
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super(opts, "profileRadarFacility2");
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this.radius = 200;
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this.isRadarFacility = true;
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this.arcGenerator = arc_default().innerRadius(0);
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}
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async init(appState) {
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await super.init(appState);
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const config = structuredClone(appState.plots.find((p) => p.id === this.id));
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for (const row of config.terms) {
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this.scoreTerms.push(row);
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}
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this.angle = Math.PI * 2 / config.terms.length;
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}
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async main() {
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this.dom.loadingDiv.style("display", "");
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try {
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await super.main();
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await this.setControls();
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this.plot();
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}
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/**
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* Called by the base class after super.setControls() builds the filter UI
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* and sets this.filter. One round-trip to termdb/profileRadarFacility2Scores
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* populates both this.data (aggregate) and this.sampleData (single-site).
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*/
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async fetchRadarFacility2Scores() {
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const response = await dofetch3("termdb/profileRadarFacility2Scores", {
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body: {
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genome: this.state.vocab.genome,
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dslabel: this.state.vocab.dslabel,
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scoreTerms: this.scoreTerms.map((t) => ({
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score: { term: { id: t.score.term.id }, q: t.score.q },
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maxScore: typeof t.maxScore === "number" ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }
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})),
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filter: this.filter,
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filterByUserSites: this.settings?.filterByUserSites,
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facilitySite: this.settings?.facilitySite || null
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}
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});
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if (response && "error" in response) throw response.error;
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return response;
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}
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plot() {
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const hasFacilityData = !!this.sampleData?.site;
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const { radarG, rows, data, data2 } = this.createSvgAndGrid(hasFacilityData);
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this.drawLines(radarG, data, data2, hasFacilityData);
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this.drawPercentLabels(radarG);
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this.drawTableAndLegend(rows, hasFacilityData);
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}
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/*
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Two layouts. Normally the legend column sits to the right of the radar inside the svg and
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the score table sits to its right again. In comparison mode two charts share the row, so
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the legend and filter blocks stack under the radar and the table moves below the svg. The
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filter legend grows a row per active filter, hence the derived height.
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*/
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createSvgAndGrid(hasFacilityData) {
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const isComparison = this.isComparison;
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const x = 300;
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const y = 330;
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const legendY = 600, filterY = 700;
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const width = isComparison ? 660 : 1100;
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const height = isComparison ? filterY + this.getFilterLegendRowCount() * 22 + 20 : 630;
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this.dom.svg = this.dom.plotDiv.append("div").style("display", "inline-block").append("svg").attr("width", width).attr("height", height);
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const rightDiv = this.dom.plotDiv.append("div").style("display", isComparison ? "block" : "inline-block").style("vertical-align", "top").style("margin-top", isComparison ? "0" : "80px").style("margin-right", "20px");
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this.dom.tableDiv = rightDiv.append("div").attr("data-testid", "sjpp-profileRadarFacility2-data-table");
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this.dom.svg.append("text").attr("transform", `translate(90, 30)`).attr("font-weight", "bold").text(this.config.title);
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const radarG = this.dom.svg.append("g").attr("transform", `translate(${x},${y})`);
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this.radarG = radarG;
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this.legendG = this.dom.svg.append("g").attr("data-testid", "sjpp-profileRadarFacility2-legend").attr("font-size", "0.9em").attr("transform", isComparison ? `translate(20, ${legendY})` : `translate(${x + 320},${y - 150})`);
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this.filterG = this.dom.svg.append("g").attr("transform", isComparison ? `translate(20, ${filterY})` : `translate(${x + 320},${y - 50})`);
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for (let i2 = 0; i2 <= 10; i2++) this.drawPolygon(i2 * 10);
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const rows = [];
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const data = [];
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const data2 = [];
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const angle = this.angle;
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let i = 0;
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for (const item of this.config.terms) {
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const iangle = i * angle - Math.PI / 2;
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const rawFacility = this.getSamplePercentage(item);
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const rawGlobal = this.getPercentage(item);
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const p1 = hasFacilityData && Number.isFinite(rawFacility) ? rawFacility : null;
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const p2 = Number.isFinite(rawGlobal) ? rawGlobal : null;
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const tooltipDatum = { module: item.module, percentage1: p1, percentage2: p2 };
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this.radarG.append("path").datum(tooltipDatum).attr("fill", "transparent").attr(
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"d",
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this.arcGenerator({
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outerRadius: this.radius,
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startAngle: i * angle - angle / 2,
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endAngle: (i + 1) * angle - angle / 2
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})
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).on("click", (event) => this.onMouseOver(event));
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if (p2 !== null) this.addDataPoint(iangle, data2, p2, false, tooltipDatum);
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else data2.push(null);
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if (p1 !== null) this.addDataPoint(iangle, data, p1, true, tooltipDatum);
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else data.push(null);
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const color = item.score.term.color;
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const bothPresent = p1 !== null && p2 !== null;
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const diff = bothPresent ? Math.abs(p1 - p2) : null;
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const diffRow = diff !== null ? { value: diff } : { value: "\u2014" };
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if (diff !== null && diff >= 20) diffRow.color = p2 > p1 ? "red" : "blue";
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rows.push([
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{ color, disabled: true },
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{ value: item.module },
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{ value: p1 !== null ? p1 : "\u2014" },
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{ value: p2 !== null ? p2 : "\u2014" },
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diffRow
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]);
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this.drawModuleLabel(item.module, iangle);
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i++;
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}
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return { radarG, rows, data, data2 };
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}
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drawLines(radarG, data, data2, hasFacilityData) {
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const closePolygon = (arr) => {
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const firstDefined = arr.find((v) => v !== null);
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if (firstDefined) arr.push(firstDefined);
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};
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closePolygon(data2);
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const color1 = "blue";
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const color2 = "gray";
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if (hasFacilityData) {
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closePolygon(data);
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radarG.append("g").append("path").style("stroke", color1).attr("fill", "none").attr("stroke-width", "2px").attr("d", this.lineGenerator(data));
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}
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if (this.state.logged) {
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radarG.append("g").append("path").style("stroke", color2).attr("fill", "none").style("stroke-dasharray", "5, 5").attr("d", this.lineGenerator(data2));
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}
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}
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drawPercentLabels(radarG) {
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for (let i = 0; i <= 10; i++) {
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const percent = i * 10;
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radarG.append("text").attr("transform", `translate(0, ${-percent / 100 * this.radius - 2})`).attr("text-anchor", "end").style("font-size", "0.8rem").text(`${percent}%`).attr("pointer-events", "none");
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}
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}
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drawTableAndLegend(rows, hasFacilityData) {
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const columns = [
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{ label: "Color" },
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{ label: "Module" },
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{ label: "Facility" },
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{ label: "Global" },
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{ label: "Difference*" }
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];
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renderTable({
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rows,
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columns,
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div: this.dom.tableDiv,
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showLines: true,
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resize: true
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});
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this.addDifferenceNote(
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`* Difference between site and aggregated scores. If bigger than 20 and positive shown in blue, if negative shown in red.`
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);
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this.addFilterLegend();
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this.legendG.append("text").attr("text-anchor", "left").style("font-weight", "bold").text("Legend");
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if (hasFacilityData) {
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const site = this.sampleData.site;
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this.addFacilityLegendItem(`${site.label} / ${site.value}`, "blue", 0, "none");
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this.addFacilityLegendItem(this.config.score, "gray", 1, "5, 5");
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} else {
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this.legendG.append("text").attr("text-anchor", "start").style("font-style", "italic").style("font-size", "0.85em").attr("transform", "translate(0, 25)").text("No institutional data available for the current filter.");
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if (this.state.logged) {
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this.addFacilityLegendItem(this.config.score, "gray", 2, "5, 5");
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}
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}
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}
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addDifferenceNote(text) {
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const noteDiv = this.dom.tableDiv.append("div").attr("data-testid", "sjpp-profileRadarFacility2-difference-note").style("display", "flex").style("align-items", "center").style("gap", "6px").style("margin-top", "8px").style("font-size", "0.85em").style("font-style", "italic").style("color", "#555");
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|
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noteDiv.append("span").attr("aria-hidden", "true").style("font-style", "normal").style("font-size", "1.1em").text("\u24D8");
|
|
224
|
-
noteDiv.append("span").text(text);
|
|
225
|
-
}
|
|
226
|
-
drawModuleLabel(module, iangle) {
|
|
227
|
-
const radius = this.radius;
|
|
228
|
-
const leftSide = iangle > Math.PI / 2 && iangle <= 3 / 2 * Math.PI;
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|
229
|
-
const dx = radius * 1.1 * Math.cos(iangle);
|
|
230
|
-
let dy = radius * 1.1 * Math.sin(iangle) - 10;
|
|
231
|
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const textElem = this.radarG.append("text").attr("x", `${dx}px`).attr("y", `${dy}px`).attr("font-size", "0.9em");
|
|
232
|
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const texts = module.split(" ");
|
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let span;
|
|
234
|
-
for (const text of texts) {
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235
|
-
if (text != "and") {
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|
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span = textElem.append("tspan").attr("x", `${dx}px`).attr("y", `${dy}px`).text(text);
|
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|
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} else span.append("tspan").text(" and");
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|
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}
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|
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|
-
if (leftSide) textElem.attr("text-anchor", "end");
|
|
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|
-
}
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|
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|
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addDataPoint(iangle, data, percentage, isFacility, tooltipDatum) {
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243
|
-
const iradius = percentage / 100 * this.radius;
|
|
244
|
-
const x = iradius * Math.cos(iangle);
|
|
245
|
-
const y = iradius * Math.sin(iangle);
|
|
246
|
-
const color = isFacility ? "blue" : "#aaa";
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|
247
|
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this.radarG.append("g").attr("transform", `translate(${x}, ${y})`).append("circle").attr("r", 4).attr("fill", color).datum(tooltipDatum).on("click", (event) => this.onMouseOver(event));
|
|
248
|
-
data.push([x, y]);
|
|
249
|
-
}
|
|
250
|
-
drawPolygon(percent) {
|
|
251
|
-
const data = [];
|
|
252
|
-
for (let i = 0; i < this.config.terms.length; i++) {
|
|
253
|
-
const iangle = i * this.angle - Math.PI / 2;
|
|
254
|
-
const iradius = percent / 100 * this.radius;
|
|
255
|
-
const x = iradius * Math.cos(iangle);
|
|
256
|
-
const y = iradius * Math.sin(iangle);
|
|
257
|
-
data.push([x, y]);
|
|
258
|
-
}
|
|
259
|
-
data.push(data[0]);
|
|
260
|
-
this.radarG.append("g").append("path").style("stroke", "#aaa").attr("fill", "none").attr("d", this.lineGenerator(data)).style("opacity", "0.5");
|
|
261
|
-
}
|
|
262
|
-
addFacilityLegendItem(text, color, index, strokeDash) {
|
|
263
|
-
const step = 25;
|
|
264
|
-
const y = step + index * step;
|
|
265
|
-
const x = 35;
|
|
266
|
-
this.legendG.append("path").attr("stroke", color).style("stroke-dasharray", strokeDash).attr("stroke-width", "2px").attr(
|
|
267
|
-
"d",
|
|
268
|
-
this.lineGenerator([
|
|
269
|
-
[0, y - 5],
|
|
270
|
-
[x, y - 5]
|
|
271
|
-
])
|
|
272
|
-
);
|
|
273
|
-
this.legendG.append("g").attr("transform", `translate(0, ${y - 5})`).append("circle").attr("r", 4).attr("fill", color);
|
|
274
|
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this.legendG.append("text").attr("font-size", "0.9em").attr("transform", `translate(${x + 5}, ${y})`).attr("text-anchor", "left").append("tspan").text(text);
|
|
275
|
-
}
|
|
276
|
-
onMouseOver(event) {
|
|
277
|
-
const d = event.target.__data__;
|
|
278
|
-
if (d?.module) {
|
|
279
|
-
const label1 = "Facility";
|
|
280
|
-
const label2 = this.config.score;
|
|
281
|
-
const menu = this.tip.clear();
|
|
282
|
-
menu.d.append("div").style("font-weight", "bold").text(d.module);
|
|
283
|
-
const table = menu.d.append("table");
|
|
284
|
-
let tr = table.append("tr");
|
|
285
|
-
tr.append("td").text(label1);
|
|
286
|
-
tr.append("td").text(d.percentage1 ?? "\u2014");
|
|
287
|
-
tr = table.append("tr");
|
|
288
|
-
tr.append("td").text(label2);
|
|
289
|
-
tr.append("td").text(d.percentage2 ?? "\u2014");
|
|
290
|
-
menu.show(event.clientX, event.clientY, true, true);
|
|
291
|
-
} else this.onMouseOut(event);
|
|
292
|
-
}
|
|
293
|
-
/**
|
|
294
|
-
* Returns the single-site percentage for term `d` — or `undefined` when the
|
|
295
|
-
* server omitted the term (no eligible data) OR when `sampleData` is absent.
|
|
296
|
-
* Callers must treat `undefined` as missing and NOT participate in arithmetic
|
|
297
|
-
* or coordinate math — coercing to 0 would conflate missing with a real 0 score.
|
|
298
|
-
*/
|
|
299
|
-
getSamplePercentage(d) {
|
|
300
|
-
if (!d) return void 0;
|
|
301
|
-
return this.sampleData?.term2Score?.[d.score.term.id];
|
|
302
|
-
}
|
|
303
|
-
};
|
|
304
|
-
async function getPlotConfig(opts, app, _activeCohort) {
|
|
305
|
-
try {
|
|
306
|
-
const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
|
|
307
|
-
const defaults = await getProfilePlotConfig(activeCohort, app, opts);
|
|
308
|
-
if (!defaults) throw "default config not found in termdbConfig.plotConfigByCohort.profileRadarFacility2";
|
|
309
|
-
const config = copyMerge(structuredClone(defaults), opts);
|
|
310
|
-
const settings = getDefaultProfilePlotSettings();
|
|
311
|
-
config.settings = {
|
|
312
|
-
profileRadarFacility2: settings,
|
|
313
|
-
controls: { isOpen: false }
|
|
314
|
-
};
|
|
315
|
-
const twlst = [];
|
|
316
|
-
for (const row of config.terms) {
|
|
317
|
-
row.score.q = row.maxScore.q = { mode: "continuous" };
|
|
318
|
-
twlst.push(row.score);
|
|
319
|
-
twlst.push(row.maxScore);
|
|
320
|
-
}
|
|
321
|
-
await fillTwLst(twlst, app.vocabApi);
|
|
322
|
-
return config;
|
|
323
|
-
} catch (e) {
|
|
324
|
-
throw `${e} [profileRadarFacility2 getPlotConfig()]`;
|
|
325
|
-
}
|
|
326
|
-
}
|
|
327
|
-
var profileRadarFacility2Init = getCompInit(ProfileRadarFacility2);
|
|
328
|
-
var componentInit = profileRadarFacility2Init;
|
|
329
|
-
export {
|
|
330
|
-
componentInit,
|
|
331
|
-
getPlotConfig,
|
|
332
|
-
makeChartBtnMenu,
|
|
333
|
-
profileRadarFacility2Init
|
|
334
|
-
};
|
|
335
|
-
//# sourceMappingURL=radarFacility2-JCOKJQQF.js.map
|
package/dist/render-IJ6GE3NE.js
DELETED
|
@@ -1,33 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
renderGeomap
|
|
3
|
-
} from "./chunk-M367Y7ML.js";
|
|
4
|
-
import "./chunk-C3HEDQPT.js";
|
|
5
|
-
import "./chunk-HJ6L54YS.js";
|
|
6
|
-
import "./chunk-KV4W2ACA.js";
|
|
7
|
-
import "./chunk-B6UXFX73.js";
|
|
8
|
-
import "./chunk-ELJX3QIQ.js";
|
|
9
|
-
import "./chunk-3FEP6B5T.js";
|
|
10
|
-
import "./chunk-EEB5VE2A.js";
|
|
11
|
-
import "./chunk-6RRZRISL.js";
|
|
12
|
-
import "./chunk-2KM4PRQM.js";
|
|
13
|
-
import "./chunk-OBDIJ4QS.js";
|
|
14
|
-
import "./chunk-6FG6JFZP.js";
|
|
15
|
-
import "./chunk-3XBG5HIV.js";
|
|
16
|
-
import "./chunk-SB36AUG7.js";
|
|
17
|
-
import "./chunk-WINIL2KN.js";
|
|
18
|
-
import "./chunk-PF4DSFDR.js";
|
|
19
|
-
import "./chunk-7X6NF7NI.js";
|
|
20
|
-
import "./chunk-W5J3LTYS.js";
|
|
21
|
-
import "./chunk-Z2ZITHT4.js";
|
|
22
|
-
import "./chunk-4OLM3KSB.js";
|
|
23
|
-
import "./chunk-FXQXCOII.js";
|
|
24
|
-
import "./chunk-TLT4YIG3.js";
|
|
25
|
-
import "./chunk-5R63Q5KH.js";
|
|
26
|
-
import "./chunk-I6Y4O3RR.js";
|
|
27
|
-
import "./chunk-Q5RDQNIT.js";
|
|
28
|
-
import "./chunk-DQC5FFGV.js";
|
|
29
|
-
import "./chunk-HS5PO5ZQ.js";
|
|
30
|
-
export {
|
|
31
|
-
renderGeomap
|
|
32
|
-
};
|
|
33
|
-
//# sourceMappingURL=render-IJ6GE3NE.js.map
|
package/dist/report-WLLFUA7L.js
DELETED
|
@@ -1,217 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
PlotBase,
|
|
3
|
-
controlsInit,
|
|
4
|
-
downloadSVGsAsPdf
|
|
5
|
-
} from "./chunk-C3HEDQPT.js";
|
|
6
|
-
import "./chunk-HJ6L54YS.js";
|
|
7
|
-
import "./chunk-KV4W2ACA.js";
|
|
8
|
-
import {
|
|
9
|
-
importPlot
|
|
10
|
-
} from "./chunk-B6UXFX73.js";
|
|
11
|
-
import "./chunk-ELJX3QIQ.js";
|
|
12
|
-
import "./chunk-3FEP6B5T.js";
|
|
13
|
-
import "./chunk-EEB5VE2A.js";
|
|
14
|
-
import {
|
|
15
|
-
icons
|
|
16
|
-
} from "./chunk-6RRZRISL.js";
|
|
17
|
-
import "./chunk-2KM4PRQM.js";
|
|
18
|
-
import "./chunk-OBDIJ4QS.js";
|
|
19
|
-
import "./chunk-6FG6JFZP.js";
|
|
20
|
-
import "./chunk-3XBG5HIV.js";
|
|
21
|
-
import "./chunk-SB36AUG7.js";
|
|
22
|
-
import {
|
|
23
|
-
copyMerge,
|
|
24
|
-
getCompInit
|
|
25
|
-
} from "./chunk-WINIL2KN.js";
|
|
26
|
-
import "./chunk-PF4DSFDR.js";
|
|
27
|
-
import "./chunk-7X6NF7NI.js";
|
|
28
|
-
import "./chunk-W5J3LTYS.js";
|
|
29
|
-
import "./chunk-Z2ZITHT4.js";
|
|
30
|
-
import "./chunk-4OLM3KSB.js";
|
|
31
|
-
import "./chunk-FXQXCOII.js";
|
|
32
|
-
import "./chunk-TLT4YIG3.js";
|
|
33
|
-
import "./chunk-5R63Q5KH.js";
|
|
34
|
-
import "./chunk-I6Y4O3RR.js";
|
|
35
|
-
import "./chunk-Q5RDQNIT.js";
|
|
36
|
-
import "./chunk-DQC5FFGV.js";
|
|
37
|
-
import "./chunk-HS5PO5ZQ.js";
|
|
38
|
-
|
|
39
|
-
// plots/report/view/reportView.ts
|
|
40
|
-
var ReportView = class {
|
|
41
|
-
constructor(report) {
|
|
42
|
-
this.opts = report.opts;
|
|
43
|
-
this.report = report;
|
|
44
|
-
const leftDiv = this.opts.holder.insert("div").style("display", "inline-block");
|
|
45
|
-
const controlsHolder = leftDiv.insert("div").style("display", "inline-block");
|
|
46
|
-
const mainDiv = this.opts.holder.insert("div").style("display", "inline-block").style("vertical-align", "top").style("padding", "20px");
|
|
47
|
-
const headerDiv = mainDiv.append("div").style("padding", "10px");
|
|
48
|
-
const downloadDiv = headerDiv.append("div").style("display", "inline-block").style("padding-left", "10px").style("vertical-align", "middle");
|
|
49
|
-
icons["pdf"](downloadDiv, {
|
|
50
|
-
handler: () => this.report.downloadReport(),
|
|
51
|
-
title: "Download the report",
|
|
52
|
-
width: 20,
|
|
53
|
-
height: 20
|
|
54
|
-
});
|
|
55
|
-
const plotsDiv = mainDiv.append("div");
|
|
56
|
-
this.dom = {
|
|
57
|
-
headerDiv,
|
|
58
|
-
plotsDiv,
|
|
59
|
-
header: this.opts.header,
|
|
60
|
-
//holder,
|
|
61
|
-
controlsHolder
|
|
62
|
-
};
|
|
63
|
-
if (this.dom.header) {
|
|
64
|
-
this.dom.header.html(this.report.config.name || "Summary Report");
|
|
65
|
-
}
|
|
66
|
-
}
|
|
67
|
-
getControlInputs() {
|
|
68
|
-
const inputs = [];
|
|
69
|
-
return inputs;
|
|
70
|
-
}
|
|
71
|
-
};
|
|
72
|
-
|
|
73
|
-
// plots/report/report.ts
|
|
74
|
-
var Report = class _Report extends PlotBase {
|
|
75
|
-
constructor(opts, api) {
|
|
76
|
-
super(opts, api);
|
|
77
|
-
this.components = {};
|
|
78
|
-
this.type = _Report.type;
|
|
79
|
-
}
|
|
80
|
-
static {
|
|
81
|
-
this.type = "report";
|
|
82
|
-
}
|
|
83
|
-
async init(appState) {
|
|
84
|
-
this.config = appState.plots.find((p) => p.id === this.id);
|
|
85
|
-
this.view = new ReportView(this);
|
|
86
|
-
this.components = { plots: {} };
|
|
87
|
-
const state = this.getState(appState);
|
|
88
|
-
for (const section of state.config.sections) {
|
|
89
|
-
const div = this.view.dom.plotsDiv.append("div");
|
|
90
|
-
const headerIcon = div.append("span").style("margin-right", "10px").style("cursor", "pointer").text("\u25BC");
|
|
91
|
-
div.append("div").style("display", "inline-block").style("font-size", "1.2em").style("margin", "10px 0px").style("font-weight", "bold").text(section.name);
|
|
92
|
-
const sectionDiv = div.append("div").style("margin", "10px").style("display", "flex").style("flex-direction", "row").style("flex-wrap", "wrap").style("width", "100vw");
|
|
93
|
-
headerIcon.on("click", () => {
|
|
94
|
-
const display = sectionDiv.style("display");
|
|
95
|
-
headerIcon.text(display === "none" ? "\u25BC" : "\u25B2");
|
|
96
|
-
sectionDiv.style("display", display === "none" ? "flex" : "none");
|
|
97
|
-
});
|
|
98
|
-
for (const plot of section.plots) {
|
|
99
|
-
if (this.components.plots[plot.id]) continue;
|
|
100
|
-
await this.setPlot(plot, sectionDiv);
|
|
101
|
-
}
|
|
102
|
-
}
|
|
103
|
-
}
|
|
104
|
-
getState(appState) {
|
|
105
|
-
const config = appState.plots.find((p) => p.id === this.id);
|
|
106
|
-
if (!config) {
|
|
107
|
-
throw `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`;
|
|
108
|
-
}
|
|
109
|
-
return {
|
|
110
|
-
config,
|
|
111
|
-
plots: appState.plots.filter((p) => p.parentId === this.id),
|
|
112
|
-
//this property is needed to indicate that child plots need to be added to the appState plots
|
|
113
|
-
termfilter: appState.termfilter,
|
|
114
|
-
vocab: appState.vocab,
|
|
115
|
-
termdbConfig: appState.termdbConfig
|
|
116
|
-
};
|
|
117
|
-
}
|
|
118
|
-
async main() {
|
|
119
|
-
this.config = structuredClone(this.state.config);
|
|
120
|
-
this.settings = this.config.settings.report;
|
|
121
|
-
}
|
|
122
|
-
async setPlot(plot, sectionDiv) {
|
|
123
|
-
const plotDiv = sectionDiv.append("div").style("display", "inline-block").style("margin", "10px");
|
|
124
|
-
const headerDiv = plotDiv.append("div");
|
|
125
|
-
const headerIcon = headerDiv.append("span").style("margin", "10px").style("cursor", "pointer").text("\u25BC");
|
|
126
|
-
const header = headerDiv.append("div").style("display", "inline-block").style("font-size", "1.1em").style("margin-top", "10px");
|
|
127
|
-
headerIcon.on("click", () => {
|
|
128
|
-
const display = holder.style("display");
|
|
129
|
-
headerIcon.text(display === "none" ? "\u25BC" : "\u25B2");
|
|
130
|
-
holder.style("display", display === "none" ? "block" : "none");
|
|
131
|
-
});
|
|
132
|
-
const holder = plotDiv.append("div");
|
|
133
|
-
const opts = structuredClone(plot);
|
|
134
|
-
opts.header = header;
|
|
135
|
-
opts.holder = holder;
|
|
136
|
-
opts.app = this.app;
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137
|
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opts.parentId = this.id;
|
|
138
|
-
const { componentInit: componentInit2 } = await importPlot(opts.chartType);
|
|
139
|
-
this.components.plots[opts.id] = await componentInit2(opts);
|
|
140
|
-
}
|
|
141
|
-
async setControls() {
|
|
142
|
-
this.view.dom.controlsHolder.selectAll("*").remove();
|
|
143
|
-
const inputs = this.view.getControlInputs();
|
|
144
|
-
this.components = {
|
|
145
|
-
controls: await controlsInit({
|
|
146
|
-
app: this.app,
|
|
147
|
-
id: this.id,
|
|
148
|
-
holder: this.view.dom.controlsHolder,
|
|
149
|
-
inputs
|
|
150
|
-
})
|
|
151
|
-
};
|
|
152
|
-
}
|
|
153
|
-
getChartImages() {
|
|
154
|
-
const chartImagesAll = [];
|
|
155
|
-
for (const section of this.config.sections) {
|
|
156
|
-
for (const plotConfig of section.plots) {
|
|
157
|
-
const plot = this.components.plots[plotConfig.id];
|
|
158
|
-
if (plot?.getChartImages) {
|
|
159
|
-
const chartImages = plot.getChartImages();
|
|
160
|
-
for (const chartImage of chartImages) {
|
|
161
|
-
if (chartImage.name.trim()) chartImage.name = `${section.name} / ${chartImage.name}`;
|
|
162
|
-
else chartImage.name = section.name;
|
|
163
|
-
chartImagesAll.push(chartImage);
|
|
164
|
-
}
|
|
165
|
-
}
|
|
166
|
-
}
|
|
167
|
-
}
|
|
168
|
-
return chartImagesAll;
|
|
169
|
-
}
|
|
170
|
-
async downloadReport() {
|
|
171
|
-
const chartImagesAll = this.getChartImages();
|
|
172
|
-
const globalFilterImg = await this.app.getComponents("nav.filter").getFilterImage();
|
|
173
|
-
const filterImg = await this.opts.getFilterImage();
|
|
174
|
-
const filterImgs = [];
|
|
175
|
-
if (globalFilterImg) filterImgs.push(globalFilterImg);
|
|
176
|
-
if (filterImg) filterImgs.push(filterImg);
|
|
177
|
-
downloadSVGsAsPdf(chartImagesAll, "report", "landscape", filterImgs);
|
|
178
|
-
}
|
|
179
|
-
};
|
|
180
|
-
async function getPlotConfig(opts, app) {
|
|
181
|
-
const settings = getDefaultReportSettings();
|
|
182
|
-
const plot = {
|
|
183
|
-
settings: {
|
|
184
|
-
controls: {
|
|
185
|
-
isOpen: false
|
|
186
|
-
// control panel is hidden by default
|
|
187
|
-
},
|
|
188
|
-
report: settings,
|
|
189
|
-
startColor: {},
|
|
190
|
-
//dict to store the start color of the gradient for each chart when using continuous color
|
|
191
|
-
stopColor: {}
|
|
192
|
-
//dict to store the stop color of the gradient for each chart when using continuous color
|
|
193
|
-
}
|
|
194
|
-
};
|
|
195
|
-
try {
|
|
196
|
-
const config = app.vocabApi?.termdbConfig?.plotConfigByCohort?.default?.report;
|
|
197
|
-
opts.filter = app.vocabApi?.termdbConfig?.authFilter;
|
|
198
|
-
copyMerge(plot, config, opts);
|
|
199
|
-
return plot;
|
|
200
|
-
} catch (e) {
|
|
201
|
-
console.log(e);
|
|
202
|
-
throw `${e} [sampleScatter getPlotConfig()]`;
|
|
203
|
-
}
|
|
204
|
-
}
|
|
205
|
-
var reportInit = getCompInit(Report);
|
|
206
|
-
var componentInit = reportInit;
|
|
207
|
-
function getDefaultReportSettings() {
|
|
208
|
-
return {};
|
|
209
|
-
}
|
|
210
|
-
export {
|
|
211
|
-
Report,
|
|
212
|
-
componentInit,
|
|
213
|
-
getDefaultReportSettings,
|
|
214
|
-
getPlotConfig,
|
|
215
|
-
reportInit
|
|
216
|
-
};
|
|
217
|
-
//# sourceMappingURL=report-WLLFUA7L.js.map
|
|
@@ -1,43 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
componentInit,
|
|
3
|
-
getPlotConfig,
|
|
4
|
-
getSamplesRelated,
|
|
5
|
-
getTermValue,
|
|
6
|
-
sampleViewInit,
|
|
7
|
-
searchSampleInput
|
|
8
|
-
} from "./chunk-P7X4LDW4.js";
|
|
9
|
-
import "./chunk-C3HEDQPT.js";
|
|
10
|
-
import "./chunk-HJ6L54YS.js";
|
|
11
|
-
import "./chunk-KV4W2ACA.js";
|
|
12
|
-
import "./chunk-B6UXFX73.js";
|
|
13
|
-
import "./chunk-ELJX3QIQ.js";
|
|
14
|
-
import "./chunk-3FEP6B5T.js";
|
|
15
|
-
import "./chunk-EEB5VE2A.js";
|
|
16
|
-
import "./chunk-6RRZRISL.js";
|
|
17
|
-
import "./chunk-2KM4PRQM.js";
|
|
18
|
-
import "./chunk-OBDIJ4QS.js";
|
|
19
|
-
import "./chunk-6FG6JFZP.js";
|
|
20
|
-
import "./chunk-3XBG5HIV.js";
|
|
21
|
-
import "./chunk-SB36AUG7.js";
|
|
22
|
-
import "./chunk-WINIL2KN.js";
|
|
23
|
-
import "./chunk-PF4DSFDR.js";
|
|
24
|
-
import "./chunk-7X6NF7NI.js";
|
|
25
|
-
import "./chunk-W5J3LTYS.js";
|
|
26
|
-
import "./chunk-Z2ZITHT4.js";
|
|
27
|
-
import "./chunk-4OLM3KSB.js";
|
|
28
|
-
import "./chunk-FXQXCOII.js";
|
|
29
|
-
import "./chunk-TLT4YIG3.js";
|
|
30
|
-
import "./chunk-5R63Q5KH.js";
|
|
31
|
-
import "./chunk-I6Y4O3RR.js";
|
|
32
|
-
import "./chunk-Q5RDQNIT.js";
|
|
33
|
-
import "./chunk-DQC5FFGV.js";
|
|
34
|
-
import "./chunk-HS5PO5ZQ.js";
|
|
35
|
-
export {
|
|
36
|
-
componentInit,
|
|
37
|
-
getPlotConfig,
|
|
38
|
-
getSamplesRelated,
|
|
39
|
-
getTermValue,
|
|
40
|
-
sampleViewInit,
|
|
41
|
-
searchSampleInput
|
|
42
|
-
};
|
|
43
|
-
//# sourceMappingURL=sampleView-LPKSYUNF.js.map
|