@sjcrh/proteinpaint-client 2.207.1 → 2.208.0

package/dist/pseudbulk.unit.spec-JDKUQUCM.js

@@ -1,106 +0,0 @@
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import {
-  SearchHandler,
-  createPseudobulkTerm,
-  isSamePseudobulkSelection
-} from "./chunk-D6AB63O3.js";
-import "./chunk-PC4MFDHP.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-HPAW7XDM.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-BZN2O76M.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-52QHIKH2.js";
-import "./chunk-A2ORIMUJ.js";
-import "./chunk-PPSWNLMG.js";
-import "./chunk-RUBZCKIX.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termdb/handlers/test/pseudbulk.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- termdb/handlers/pseudobulk -***-");
-  test.end();
-});
-(0, import_tape.default)("buildRenderingDataMap() groups terms by assay and memberId", function(test) {
-  const handler = new SearchHandler();
-  const terms = [
-    { id: "t1", name: "A", assay: "geneExpression", memberId: "CD4" },
-    { id: "t2", name: "B", assay: "geneExpression", memberId: "CD4" },
-    { id: "t3", name: "C", assay: "geneExpression", memberId: "CD8" },
-    { id: "t4", name: "D", assay: "cellType", memberId: "Myeloid" }
-  ];
-  const map = handler.buildRenderingDataMap(terms);
-  test.equal(map.size, 2, "creates one top-level key per assay");
-  test.ok(map.has("geneExpression"), "contains geneExpression assay");
-  test.ok(map.has("cellType"), "contains cellType assay");
-  const geneExpressionMap = map.get("geneExpression");
-  test.equal(geneExpressionMap.size, 2, "creates one nested key per memberId within assay");
-  test.equal(geneExpressionMap.get("CD4").length, 2, "groups multiple terms under same assay/memberId");
-  test.equal(geneExpressionMap.get("CD8")[0].id, "t3", "stores the correct term under another memberId");
-  const cellTypeMap = map.get("cellType");
-  test.equal(cellTypeMap.size, 1, "cellType assay has one memberId");
-  test.equal(cellTypeMap.get("Myeloid")[0].id, "t4", "stores term under expected cellType memberId");
-  test.end();
-});
-(0, import_tape.default)("buildRenderingDataMap() returns an empty map for empty input", function(test) {
-  const handler = new SearchHandler();
-  const map = handler.buildRenderingDataMap([]);
-  test.equal(map.size, 0, "empty input produces empty map");
-  test.end();
-});
-(0, import_tape.default)("pseudobulk selection identity includes assay and memberId", function(test) {
-  const term = {
-    id: "blast",
-    name: "Blast",
-    type: "pseudobulk",
-    assay: "geneExpression",
-    memberId: "Cell Type"
-  };
-  test.ok(isSamePseudobulkSelection(term, { ...term }), "matches the same pseudobulk category");
-  test.notOk(
-    isSamePseudobulkSelection(term, { ...term, memberId: "Cell Subtype" }),
-    "does not match the same category id from another member group"
-  );
-  test.notOk(
-    isSamePseudobulkSelection(term, { ...term, assay: "proteinExpression" }),
-    "does not match the same category id from another assay"
-  );
-  test.end();
-});
-(0, import_tape.default)("createPseudobulkTerm() creates one term for one cell type and gene", function(test) {
-  const selectedTerm = {
-    id: "blast",
-    name: "Blast",
-    type: "pseudobulk",
-    assay: "geneExpression",
-    memberId: "Cell Type"
-  };
-  const term = createPseudobulkTerm(selectedTerm, "TP53");
-  test.equal(term.id, "geneExpression blast TP53", "sets a unique term.id");
-  test.equal(term.category, "blast", "sets term.category");
-  test.equal(term.gene, "TP53", "sets term.gene");
-  test.equal(term.name, "geneExpression blast TP53", "sets term.name");
-  test.notOk("genes" in term, "does not add the obsolete genes array");
-  test.end();
-});
-//# sourceMappingURL=pseudbulk.unit.spec-JDKUQUCM.js.map

package/dist/pseudbulk.unit.spec-JDKUQUCM.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../termdb/handlers/test/pseudbulk.unit.spec.ts"],
-  "sourcesContent": ["import tape from 'tape'\nimport { createPseudobulkTerm, isSamePseudobulkSelection, SearchHandler } from '../pseudobulk.ts'\n\n/**************\n test sections\n***************/\n\ntape('\\n', function (test) {\n\ttest.comment('-***- termdb/handlers/pseudobulk -***-')\n\ttest.end()\n})\n\ntape('buildRenderingDataMap() groups terms by assay and memberId', function (test) {\n\tconst handler = new SearchHandler()\n\tconst terms = [\n\t\t{ id: 't1', name: 'A', assay: 'geneExpression', memberId: 'CD4' },\n\t\t{ id: 't2', name: 'B', assay: 'geneExpression', memberId: 'CD4' },\n\t\t{ id: 't3', name: 'C', assay: 'geneExpression', memberId: 'CD8' },\n\t\t{ id: 't4', name: 'D', assay: 'cellType', memberId: 'Myeloid' }\n\t]\n\n\tconst map = handler.buildRenderingDataMap(terms as any[])\n\n\ttest.equal(map.size, 2, 'creates one top-level key per assay')\n\ttest.ok(map.has('geneExpression'), 'contains geneExpression assay')\n\ttest.ok(map.has('cellType'), 'contains cellType assay')\n\n\tconst geneExpressionMap = map.get('geneExpression')!\n\ttest.equal(geneExpressionMap.size, 2, 'creates one nested key per memberId within assay')\n\ttest.equal(geneExpressionMap.get('CD4')!.length, 2, 'groups multiple terms under same assay/memberId')\n\ttest.equal(geneExpressionMap.get('CD8')![0].id, 't3', 'stores the correct term under another memberId')\n\n\tconst cellTypeMap = map.get('cellType')!\n\ttest.equal(cellTypeMap.size, 1, 'cellType assay has one memberId')\n\ttest.equal(cellTypeMap.get('Myeloid')![0].id, 't4', 'stores term under expected cellType memberId')\n\n\ttest.end()\n})\n\ntape('buildRenderingDataMap() returns an empty map for empty input', function (test) {\n\tconst handler = new SearchHandler()\n\tconst map = handler.buildRenderingDataMap([])\n\n\ttest.equal(map.size, 0, 'empty input produces empty map')\n\ttest.end()\n})\n\ntape('pseudobulk selection identity includes assay and memberId', function (test) {\n\tconst term = {\n\t\tid: 'blast',\n\t\tname: 'Blast',\n\t\ttype: 'pseudobulk',\n\t\tassay: 'geneExpression',\n\t\tmemberId: 'Cell Type'\n\t}\n\n\ttest.ok(isSamePseudobulkSelection(term as any, { ...term } as any), 'matches the same pseudobulk category')\n\ttest.notOk(\n\t\tisSamePseudobulkSelection(term as any, { ...term, memberId: 'Cell Subtype' } as any),\n\t\t'does not match the same category id from another member group'\n\t)\n\ttest.notOk(\n\t\tisSamePseudobulkSelection(term as any, { ...term, assay: 'proteinExpression' } as any),\n\t\t'does not match the same category id from another assay'\n\t)\n\ttest.end()\n})\n\ntape('createPseudobulkTerm() creates one term for one cell type and gene', function (test) {\n\tconst selectedTerm = {\n\t\tid: 'blast',\n\t\tname: 'Blast',\n\t\ttype: 'pseudobulk',\n\t\tassay: 'geneExpression',\n\t\tmemberId: 'Cell Type'\n\t}\n\n\tconst term = createPseudobulkTerm(selectedTerm as any, 'TP53')\n\n\ttest.equal(term.id, 'geneExpression blast TP53', 'sets a unique term.id')\n\ttest.equal(term.category, 'blast', 'sets term.category')\n\ttest.equal(term.gene, 'TP53', 'sets term.gene')\n\ttest.equal(term.name, 'geneExpression blast TP53', 'sets term.name')\n\ttest.notOk('genes' in term, 'does not add the obsolete genes array')\n\ttest.end()\n})\n"],
-  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kBAAiB;IAOjB,YAAAA,SAAK,MAAM,SAAU,MAAM;AAC1B,OAAK,QAAQ,wCAAwC;AACrD,OAAK,IAAI;AACV,CAAC;AAAA,IAED,YAAAA,SAAK,8DAA8D,SAAU,MAAM;AAClF,QAAM,UAAU,IAAI,cAAc;AAClC,QAAM,QAAQ;AAAA,IACb,EAAE,IAAI,MAAM,MAAM,KAAK,OAAO,kBAAkB,UAAU,MAAM;AAAA,IAChE,EAAE,IAAI,MAAM,MAAM,KAAK,OAAO,kBAAkB,UAAU,MAAM;AAAA,IAChE,EAAE,IAAI,MAAM,MAAM,KAAK,OAAO,kBAAkB,UAAU,MAAM;AAAA,IAChE,EAAE,IAAI,MAAM,MAAM,KAAK,OAAO,YAAY,UAAU,UAAU;AAAA,EAC/D;AAEA,QAAM,MAAM,QAAQ,sBAAsB,KAAc;AAExD,OAAK,MAAM,IAAI,MAAM,GAAG,qCAAqC;AAC7D,OAAK,GAAG,IAAI,IAAI,gBAAgB,GAAG,+BAA+B;AAClE,OAAK,GAAG,IAAI,IAAI,UAAU,GAAG,yBAAyB;AAEtD,QAAM,oBAAoB,IAAI,IAAI,gBAAgB;AAClD,OAAK,MAAM,kBAAkB,MAAM,GAAG,kDAAkD;AACxF,OAAK,MAAM,kBAAkB,IAAI,KAAK,EAAG,QAAQ,GAAG,iDAAiD;AACrG,OAAK,MAAM,kBAAkB,IAAI,KAAK,EAAG,CAAC,EAAE,IAAI,MAAM,gDAAgD;AAEtG,QAAM,cAAc,IAAI,IAAI,UAAU;AACtC,OAAK,MAAM,YAAY,MAAM,GAAG,iCAAiC;AACjE,OAAK,MAAM,YAAY,IAAI,SAAS,EAAG,CAAC,EAAE,IAAI,MAAM,8CAA8C;AAElG,OAAK,IAAI;AACV,CAAC;AAAA,IAED,YAAAA,SAAK,gEAAgE,SAAU,MAAM;AACpF,QAAM,UAAU,IAAI,cAAc;AAClC,QAAM,MAAM,QAAQ,sBAAsB,CAAC,CAAC;AAE5C,OAAK,MAAM,IAAI,MAAM,GAAG,gCAAgC;AACxD,OAAK,IAAI;AACV,CAAC;AAAA,IAED,YAAAA,SAAK,6DAA6D,SAAU,MAAM;AACjF,QAAM,OAAO;AAAA,IACZ,IAAI;AAAA,IACJ,MAAM;AAAA,IACN,MAAM;AAAA,IACN,OAAO;AAAA,IACP,UAAU;AAAA,EACX;AAEA,OAAK,GAAG,0BAA0B,MAAa,EAAE,GAAG,KAAK,CAAQ,GAAG,sCAAsC;AAC1G,OAAK;AAAA,IACJ,0BAA0B,MAAa,EAAE,GAAG,MAAM,UAAU,eAAe,CAAQ;AAAA,IACnF;AAAA,EACD;AACA,OAAK;AAAA,IACJ,0BAA0B,MAAa,EAAE,GAAG,MAAM,OAAO,oBAAoB,CAAQ;AAAA,IACrF;AAAA,EACD;AACA,OAAK,IAAI;AACV,CAAC;AAAA,IAED,YAAAA,SAAK,sEAAsE,SAAU,MAAM;AAC1F,QAAM,eAAe;AAAA,IACpB,IAAI;AAAA,IACJ,MAAM;AAAA,IACN,MAAM;AAAA,IACN,OAAO;AAAA,IACP,UAAU;AAAA,EACX;AAEA,QAAM,OAAO,qBAAqB,cAAqB,MAAM;AAE7D,OAAK,MAAM,KAAK,IAAI,6BAA6B,uBAAuB;AACxE,OAAK,MAAM,KAAK,UAAU,SAAS,oBAAoB;AACvD,OAAK,MAAM,KAAK,MAAM,QAAQ,gBAAgB;AAC9C,OAAK,MAAM,KAAK,MAAM,6BAA6B,gBAAgB;AACnE,OAAK,MAAM,WAAW,MAAM,uCAAuC;AACnE,OAAK,IAAI;AACV,CAAC;",
-  "names": ["tape"]
-}

package/dist/pseudobulk-QTCUSH5I.js

@@ -1,37 +0,0 @@
-import {
-  SearchHandler,
-  createPseudobulkTerm,
-  isSamePseudobulkSelection
-} from "./chunk-D6AB63O3.js";
-import "./chunk-PC4MFDHP.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-HPAW7XDM.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-BZN2O76M.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-52QHIKH2.js";
-import "./chunk-A2ORIMUJ.js";
-import "./chunk-PPSWNLMG.js";
-import "./chunk-RUBZCKIX.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  SearchHandler,
-  createPseudobulkTerm,
-  isSamePseudobulkSelection
-};
-//# sourceMappingURL=pseudobulk-QTCUSH5I.js.map

package/dist/qualitative-7ST7SSBT.js

@@ -1,38 +0,0 @@
-import {
-  QualCustomGS,
-  QualPredefinedGS,
-  QualValues,
-  QualitativeBase
-} from "./chunk-PC4MFDHP.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-HPAW7XDM.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-BZN2O76M.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-52QHIKH2.js";
-import "./chunk-A2ORIMUJ.js";
-import "./chunk-PPSWNLMG.js";
-import "./chunk-RUBZCKIX.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  QualCustomGS,
-  QualPredefinedGS,
-  QualValues,
-  QualitativeBase
-};
-//# sourceMappingURL=qualitative-7ST7SSBT.js.map

package/dist/radar2-CEE6SNBS.js

@@ -1,327 +0,0 @@
-import {
-  ABBREV_COHORT,
-  getDefaultProfilePlotSettings,
-  getProfilePlotConfig,
-  makeChartBtnMenu,
-  profilePlot
-} from "./chunk-DPQP2GUW.js";
-import {
-  fillTwLst,
-  renderTable
-} from "./chunk-PC4MFDHP.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-HPAW7XDM.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-BZN2O76M.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import {
-  dofetch3
-} from "./chunk-52QHIKH2.js";
-import "./chunk-A2ORIMUJ.js";
-import "./chunk-PPSWNLMG.js";
-import "./chunk-RUBZCKIX.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import {
-  arc_default,
-  line_default
-} from "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// plots/profile/radar2.ts
-var ProfileRadar2 = class extends profilePlot {
-  static {
-    this.type = "profileRadar2";
-  }
-  constructor(opts) {
-    super(opts, "profileRadar2");
-    this.radius = 200;
-    this.lineGenerator = line_default().defined((d) => d !== null);
-    this.arcGenerator = arc_default().innerRadius(0);
-  }
-  async init(appState) {
-    await super.init(appState);
-    const config = appState.plots.find((p) => p.id === this.id);
-    for (const row of config.terms) {
-      this.scoreTerms.push(row.term1);
-      this.scoreTerms.push(row.term2);
-    }
-    this.angle = Math.PI * 2 / config.terms.length;
-  }
-  async main() {
-    this.dom.loadingDiv.style("display", "");
-    try {
-      await super.main();
-      await this.setControls();
-      this.plot();
-    } finally {
-      this.dom.loadingDiv.style("display", "none");
-    }
-  }
-  /**
-   * Override setControls() to fetch data from the dedicated radar2 route.
-   * The base class setControls() builds filter UI and sets this.filter but
-   * skips the data fetch for profileRadar2 (see profilePlot.ts).
-   */
-  async setControls(additionalInputs = []) {
-    await super.setControls(additionalInputs);
-    this.data = await this.fetchAggregatedScores();
-    if (this.data && "error" in this.data) throw this.data.error;
-  }
-  async fetchAggregatedScores() {
-    return dofetch3("termdb/profileRadar2Scores", {
-      body: {
-        genome: this.state.vocab.genome,
-        dslabel: this.state.vocab.dslabel,
-        scoreTerms: this.scoreTerms.map((t) => ({
-          score: { term: { id: t.score.term.id }, q: t.score.q },
-          maxScore: typeof t.maxScore === "number" ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }
-        })),
-        filterByUserSites: this.settings?.filterByUserSites,
-        filter: this.filter
-      }
-    });
-  }
-  plot() {
-    const { radarG, rows, data, data2 } = this.createSvgAndGrid();
-    this.drawLines(radarG, data, data2);
-    this.drawPercentLabels(radarG);
-    this.drawTableAndLegend(rows);
-  }
-  /*
-  Two layouts. Normally the legend column sits to the right of the radar inside the svg and
-  the score table sits to its right again. In comparison mode two charts share the row, so
-  the legend, cohort note and filter blocks stack under the radar and the table moves below
-  the svg. The filter legend grows a row per active filter, hence the derived height.
-  */
-  createSvgAndGrid() {
-    const config = this.config;
-    const isComparison = this.isComparison;
-    const x = 300;
-    const y = 310;
-    const legendY = 580, noteY = 545, filterY = 740;
-    const width = isComparison ? 660 : 1050;
-    const height = isComparison ? filterY + this.getFilterLegendRowCount() * 22 + 20 : 650;
-    this.dom.svg = this.dom.plotDiv.append("div").style("display", "inline-block").append("svg").attr("width", width).attr("height", height);
-    const rightDiv = this.dom.plotDiv.append("div").style("display", isComparison ? "block" : "inline-block").style("vertical-align", "top").style("margin-top", isComparison ? "0" : "140px").style("margin-right", "20px");
-    this.dom.tableDiv = rightDiv.append("div").attr("data-testid", "sjpp-profileRadar2-data-table");
-    this.dom.svg.append("text").attr("transform", `translate(60, 40)`).attr("font-weight", "bold").attr("font-size", "0.9rem").text(config.title);
-    const radarG = this.dom.svg.append("g").attr("transform", `translate(${x},${y})`);
-    this.radarG = radarG;
-    this.legendG = this.dom.svg.append("g").attr("data-testid", "sjpp-profileRadar2-legend").attr("transform", isComparison ? `translate(20, ${legendY})` : `translate(${x + 340},${y - 120})`);
-    this.filterG = this.dom.svg.append("g").attr("transform", isComparison ? `translate(20, ${filterY})` : `translate(${x + 340},${y - 20})`);
-    this.noteG = this.dom.svg.append("g").attr("transform", `translate(20, ${isComparison ? noteY : y + 150})`);
-    for (let i2 = 0; i2 <= 10; i2++) this.drawPolygon(i2 * 10);
-    const rows = [];
-    const data = [];
-    const data2 = [];
-    const angle = this.angle;
-    let i = 0;
-    for (const { module, term1, term2 } of config.terms) {
-      const iangle = i * angle - Math.PI / 2;
-      const raw1 = this.getPercentage(term1);
-      const raw2 = this.getPercentage(term2);
-      const p1 = Number.isFinite(raw1) ? raw1 : null;
-      const p2 = Number.isFinite(raw2) ? raw2 : null;
-      this.radarG.append("path").datum({ module, percentage1: p1, percentage2: p2 }).attr("fill", "transparent").attr(
-        "d",
-        this.arcGenerator({
-          outerRadius: this.radius,
-          startAngle: i * angle - angle / 2,
-          endAngle: (i + 1) * angle - angle / 2
-        })
-      ).on("click", (event) => this.onMouseOver(event));
-      if (p2 !== null) this.addDataPoint("term2", p2, iangle, data2);
-      else data2.push(null);
-      if (p1 !== null) this.addDataPoint("term1", p1, iangle, data);
-      else data.push(null);
-      const color = term1.score.term.color;
-      const bothPresent = p1 !== null && p2 !== null;
-      const diff = bothPresent ? Math.abs(p1 - p2) : null;
-      const diffRow = diff !== null ? { value: diff } : { value: "\u2014" };
-      if (diff !== null && diff >= 20) diffRow.color = p2 > p1 ? "red" : "blue";
-      rows.push([
-        { color, disabled: true },
-        { value: module },
-        { value: p1 !== null ? p1 : "\u2014" },
-        { value: p2 !== null ? p2 : "\u2014" },
-        diffRow
-      ]);
-      this.drawModuleLabel(module, iangle);
-      i++;
-    }
-    return { radarG, rows, data, data2 };
-  }
-  drawLines(radarG, data, data2) {
-    const closePolygon = (arr) => {
-      const firstDefined = arr.find((v) => v !== null);
-      if (firstDefined) arr.push(firstDefined);
-    };
-    closePolygon(data);
-    closePolygon(data2);
-    const color1 = "blue";
-    const color2 = "gray";
-    radarG.append("g").append("path").style("stroke", color2).attr("fill", "none").style("stroke-dasharray", "5, 5").attr("stroke-width", "2px").attr("d", this.lineGenerator(data2));
-    radarG.append("g").append("path").style("stroke", color1).attr("fill", "none").attr("stroke-width", "2px").attr("d", this.lineGenerator(data));
-  }
-  drawPercentLabels(radarG) {
-    for (let i = 0; i <= 10; i++) {
-      const percent = i * 10;
-      radarG.append("text").attr("transform", `translate(0, ${-percent / 100 * this.radius - 2})`).attr("text-anchor", "end").style("font-size", "0.8rem").text(`${percent}%`).attr("pointer-events", "none");
-    }
-  }
-  drawTableAndLegend(rows) {
-    const config = this.config;
-    const columns = [
-      { label: "Color" },
-      { label: "Module" },
-      { label: config.term1.abbrev },
-      { label: config.term2.abbrev },
-      { label: "Difference*" }
-    ];
-    renderTable({
-      rows,
-      columns,
-      div: this.dom.tableDiv,
-      showLines: true,
-      resize: true,
-      maxHeight: "60vh"
-    });
-    this.addDifferenceNote(
-      `* Difference between ${config.term1.abbrev} and ${config.term2.abbrev}. If bigger than 20 and positive shown in blue, if negative shown in red.`
-    );
-    this.legendG.append("text").attr("text-anchor", "left").style("font-weight", "bold").text("Legend");
-    let abbrev = config.term1.abbrev ? `(${config.term1.abbrev})` : "";
-    this.addRadarLegendItem(`${config.term1.name} ${abbrev}`, "blue", 0, "none");
-    abbrev = config.term2.abbrev ? `(${config.term2.abbrev})` : "";
-    this.addRadarLegendItem(`${config.term2.name} ${abbrev}`, "gray", 1, "5, 5");
-    if (this.state.activeCohort == ABBREV_COHORT) this.addEndUserImpressionNote(this.noteG);
-    else this.addPOCNote(this.noteG);
-    this.addFilterLegend();
-  }
-  addDifferenceNote(text) {
-    const noteDiv = this.dom.tableDiv.append("div").attr("data-testid", "sjpp-profileRadar2-difference-note").style("display", "flex").style("align-items", "center").style("gap", "6px").style("margin-top", "8px").style("font-size", "0.85em").style("font-style", "italic").style("color", "#555");
-    noteDiv.append("span").attr("aria-hidden", "true").style("font-style", "normal").style("font-size", "1.1em").text("\u24D8");
-    noteDiv.append("span").text(text);
-  }
-  drawModuleLabel(module, iangle) {
-    const radius = this.radius;
-    const leftSide = iangle > Math.PI / 2 && iangle <= 3 / 2 * Math.PI;
-    const dx = radius * 1.1 * Math.cos(iangle);
-    let dy = radius * 1.1 * Math.sin(iangle) - 10;
-    const textElem = this.radarG.append("text").attr("x", `${dx}px`).attr("y", `${dy}px`).attr("font-size", "0.9em");
-    const texts = module.split(" ");
-    let span;
-    for (const text of texts) {
-      if (text != "and") {
-        dy += 15;
-        span = textElem.append("tspan").attr("x", `${dx}px`).attr("y", `${dy}px`).text(text);
-      } else span.append("tspan").text(" and");
-    }
-    if (leftSide) textElem.attr("text-anchor", "end");
-  }
-  addDataPoint(field, percentage, iangle, data) {
-    const iradius = percentage / 100 * this.radius;
-    const x = iradius * Math.cos(iangle);
-    const y = iradius * Math.sin(iangle);
-    const color = field == "term1" ? "blue" : "#aaa";
-    this.radarG.append("g").attr("transform", `translate(${x}, ${y})`).append("circle").attr("r", 4).attr("fill", color);
-    data.push([x, y]);
-  }
-  drawPolygon(percent) {
-    const data = [];
-    for (let i = 0; i < this.config.terms.length; i++) {
-      const iangle = i * this.angle - Math.PI / 2;
-      const iradius = percent / 100 * this.radius;
-      const x = iradius * Math.cos(iangle);
-      const y = iradius * Math.sin(iangle);
-      data.push([x, y]);
-    }
-    data.push(data[0]);
-    this.radarG.append("g").append("path").style("stroke", "#aaa").attr("fill", "none").attr("d", this.lineGenerator(data)).style("opacity", "0.5");
-  }
-  addRadarLegendItem(text, color, index, strokeDash) {
-    const step = 25;
-    const y = step + index * step;
-    const x = 35;
-    this.legendG.append("path").attr("stroke", color).style("stroke-dasharray", strokeDash).attr("stroke-width", "2px").attr(
-      "d",
-      this.lineGenerator([
-        [0, y - 5],
-        [x, y - 5]
-      ])
-    );
-    this.legendG.append("g").attr("transform", `translate(0, ${y - 5})`).append("circle").attr("r", 4).attr("fill", color);
-    this.legendG.append("text").attr("font-size", "0.9em").attr("transform", `translate(${x + 5}, ${y})`).attr("text-anchor", "left").append("tspan").text(text);
-  }
-  onMouseOver(event) {
-    const d = event.target.__data__;
-    if (d?.module) {
-      const label1 = this.config.term1.name;
-      const label2 = this.config.term2.name;
-      const menu = this.tip.clear();
-      menu.d.append("div").style("font-weight", "bold").text(d.module);
-      const table = menu.d.append("table");
-      let tr = table.append("tr");
-      tr.append("td").text(label1);
-      tr.append("td").text(d.percentage1 ?? "\u2014");
-      tr = table.append("tr");
-      tr.append("td").text(label2);
-      tr.append("td").text(d.percentage2 ?? "\u2014");
-      menu.show(event.clientX, event.clientY, true, true);
-    } else this.onMouseOut(event);
-  }
-};
-async function getPlotConfig(opts, app, _activeCohort) {
-  try {
-    const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
-    const defaults = await getProfilePlotConfig(activeCohort, app, opts);
-    if (!defaults) throw "default config not found in termdbConfig.plotConfigByCohort.profileRadar2";
-    defaults.settings = { profileRadar2: getDefaultProfilePlotSettings() };
-    const config = copyMerge(structuredClone(defaults), opts);
-    config.settings.controls = { isOpen: false };
-    const twlst = [];
-    for (const row of config.terms) {
-      row.term1.score.q = { mode: "continuous" };
-      twlst.push(row.term1.score);
-      if (row.term1.maxScore.id) {
-        row.term1.maxScore.q = { mode: "continuous" };
-        twlst.push(row.term1.maxScore);
-      }
-      row.term2.score.q = { mode: "continuous" };
-      twlst.push(row.term2.score);
-      if (row.term2.maxScore.id) {
-        row.term2.maxScore.q = { mode: "continuous" };
-        twlst.push(row.term2.maxScore);
-      }
-    }
-    await fillTwLst(twlst, app.vocabApi);
-    return config;
-  } catch (e) {
-    throw `${e} [profileRadar2 getPlotConfig()]`;
-  }
-}
-var profileRadar2Init = getCompInit(ProfileRadar2);
-var componentInit = profileRadar2Init;
-export {
-  componentInit,
-  getPlotConfig,
-  makeChartBtnMenu,
-  profileRadar2Init
-};
-//# sourceMappingURL=radar2-CEE6SNBS.js.map