@sjcrh/proteinpaint-client 2.207.1 → 2.208.0

package/dist/chunk-HPAW7XDM.js

@@ -1,178 +0,0 @@
-import {
-  __glob
-} from "./chunk-HS5PO5ZQ.js";
-
-// import("../plots/**/*.js") in plots/importPlot.js
-var globImport_plots_js = __glob({
-  "../plots/controls.btns.js": () => import("./controls.btns-BYM4DON4.js"),
-  "../plots/controls.config.js": () => import("./controls.config-KF7PHZSG.js"),
-  "../plots/controls.js": () => import("./controls-DWDKFDXY.js"),
-  "../plots/dictionary.js": () => import("./dictionary-ERJQMALC.js"),
-  "../plots/gb/test/genomeBrowser.spec.js": () => import("./genomeBrowser.spec-JTCVUTO5.js"),
-  "../plots/geneExpression.js": () => import("./geneExpression-AWWMOUAR.js"),
-  "../plots/geneORA.js": () => import("./geneORA-NGZTMFSJ.js"),
-  "../plots/geneset.js": () => import("./geneset-APCO4BRX.js"),
-  "../plots/hierCluster.js": () => import("./hierCluster-SFRQK3PS.js"),
-  "../plots/importPlot.js": () => import("./importPlot-7V456QK7.js"),
-  "../plots/matrix.js": () => import("./matrix-DLCX6GOO.js"),
-  "../plots/matrix/hierCluster.config.js": () => import("./hierCluster.config-G2TFGBYF.js"),
-  "../plots/matrix/hierCluster.interactivity.js": () => import("./hierCluster.interactivity-LQA6J56H.js"),
-  "../plots/matrix/hierCluster.js": () => import("./hierCluster-4DRHXD6W.js"),
-  "../plots/matrix/hierCluster.renderers.js": () => import("./hierCluster.renderers-TZZJEVFO.js"),
-  "../plots/matrix/matrix.cells.js": () => import("./matrix.cells-J3QZ7C6U.js"),
-  "../plots/matrix/matrix.cluster.js": () => import("./matrix.cluster-RH4BOM5F.js"),
-  "../plots/matrix/matrix.config.js": () => import("./matrix.config-VNMS6B7J.js"),
-  "../plots/matrix/matrix.data.js": () => import("./matrix.data-PIE3TLKD.js"),
-  "../plots/matrix/matrix.dom.js": () => import("./matrix.dom-2SA43BPT.js"),
-  "../plots/matrix/matrix.groups.js": () => import("./matrix.groups-URBU775S.js"),
-  "../plots/matrix/matrix.interactivity.js": () => import("./matrix.interactivity-W5AFOAQN.js"),
-  "../plots/matrix/matrix.js": () => import("./matrix-TIV42IQB.js"),
-  "../plots/matrix/matrix.layout.js": () => import("./matrix.layout-LU3NIJAL.js"),
-  "../plots/matrix/matrix.legend.js": () => import("./matrix.legend-LTP6ETZO.js"),
-  "../plots/matrix/matrix.renderers.js": () => import("./matrix.renderers-762XI65L.js"),
-  "../plots/matrix/matrix.serieses.js": () => import("./matrix.serieses-FHDBRPZA.js"),
-  "../plots/matrix/matrix.sort.js": () => import("./matrix.sort-Q6A6UWMY.js"),
-  "../plots/matrix/matrix.sorterUi.js": () => import("./matrix.sorterUi-4M5AU5EL.js"),
-  "../plots/matrix/test/hierCluster.integration.spec.js": () => import("./hierCluster.integration.spec-ZUZKCG6A.js"),
-  "../plots/matrix/test/matrix.integration.spec.js": () => import("./matrix.integration.spec-LC6YMEKP.js"),
-  "../plots/matrix/test/matrix.sort.unit.spec.js": () => import("./matrix.sort.unit.spec-CTCOPKVS.js"),
-  "../plots/matrix/test/matrix.sorterUi.unit.spec.js": () => import("./matrix.sorterUi.unit.spec-Y7GC3PM5.js"),
-  "../plots/matrix/test/matrix.unit.spec.js": () => import("./matrix.unit.spec-DROPHFTM.js"),
-  "../plots/matrix/test/oncomatrix.spec.js": () => import("./oncomatrix.spec-UWMSLOHW.js"),
-  "../plots/plot.brainImaging.js": () => import("./plot.brainImaging-3MTTCZHI.js"),
-  "../plots/plot.disco.js": () => import("./plot.disco-HODBY7SO.js"),
-  "../plots/plot.ssgq.js": () => import("./plot.ssgq-4URQE673.js"),
-  "../plots/singleCellPlot.js": () => import("./singleCellPlot-XG3HZS7I.js"),
-  "../plots/stattable.js": () => import("./stattable-NDYUCLVZ.js"),
-  "../plots/survival/test/survival.integration.spec.js": () => import("./survival.integration.spec-WWZELTKZ.js"),
-  "../plots/table.js": () => import("./table-IAQ6J4DO.js"),
-  "../plots/test/expclust.gdc.spec.js": () => import("./expclust.gdc.spec-P77T6JR2.js"),
-  "../plots/test/summary.integration.spec.js": () => import("./summary.integration.spec-4GTCG6HY.js"),
-  "../plots/volcano/test/testData.js": () => import("./testData-DRM5HWQB.js")
-});
-
-// plots/importPlot.js
-async function importPlot(chartType, notFoundMessage = "") {
-  switch (chartType) {
-    case "aggregateMatrix":
-      return await import("./AggregateMatrix-TPXNNWVD.js");
-    case "aggMatrixInput":
-      return await import("./AggMatrixInput-RDFMGV47.js");
-    case "animatedBubbleChart":
-      return await import("./animatedBubbleChart-OQOZ3WFK.js");
-    case "brainImaging":
-      return await import("./brainImaging-35LPNBDR.js");
-    case "brainRegions":
-      return await import("./brainRegions-JMTQT4X3.js");
-    case "barchart":
-      return await import("./barchart-ESY6FOS4.js");
-    case "boxplot":
-      return await import("./BoxPlot-LOAO2MDO.js");
-    case "bubbleHeatmap":
-      return await import("./bubbleHeatmap-FMBKMDUL.js");
-    case "cellTypeBubbleHeatmap":
-      return await import("./cellTypeBubbleHeatmap-ZPTAGEWW.js");
-    case "correlationVolcano":
-      return await import("./CorrelationVolcano-AU6ZAFPG.js");
-    case "cuminc":
-      return await import("./Cuminc-O533BXFY.js");
-    case "dataDownload":
-      return await import("./dataDownload-G7TGPFGL.js");
-    case "DEinput":
-      return await import("./DEinput-TF2VYTIJ.js");
-    case "dictionary":
-      return await import("./dictionary-ERJQMALC.js");
-    case "differentialAnalysis":
-      return await import("./DifferentialAnalysis-H5NBPR3P.js");
-    case "Disco":
-      return await import("./Disco-FGFHIKUR.js");
-    case "dmr":
-      return await import("./DmrPlot-EQFXMAW5.js");
-    case "facet":
-      return await import("./facet-LJTSTASE.js");
-    case "GeneExpInput":
-      return await import("./GeneExpInput-ZY6SHXTX.js");
-    case "geneRanking":
-      return await import("./geneRanking-AYNBGFKU.js");
-    case "genomeBrowser":
-      return await import("./GB-244UT5VU.js");
-    case "geomap":
-      return await import("./Geomap-6ZV4AM23.js");
-    case "grin2":
-      return await import("./grin2-LF46UKFY.js");
-    case "gsea":
-      return await import("./GSEA-KXQBR3HH.js");
-    case "imagePlot":
-      return await import("./imagePlot-OUHFWYKT.js");
-    case "numericDictTermCluster":
-      return await import("./numericDictTermCluster-C2MYJYPZ.js");
-    case "profileBarchart2":
-      return await import("./barchart2-XEJZGCES.js");
-    case "profileForms":
-      return await import("./profileForms-Z22CJXI4.js");
-    case "profilePlot":
-      return await import("./profilePlot-IVQZBSID.js");
-    case "profilePolar2":
-      return await import("./polar2-GVFQNSLK.js");
-    case "profileRadar2":
-      return await import("./radar2-CEE6SNBS.js");
-    case "profileRadarFacility2":
-      return await import("./radarFacility2-OSKDYIK7.js");
-    case "proteinView":
-      return await import("./proteinView-AUK634AU.js");
-    case "proteomeAbundance":
-      return await import("./proteomeAbundance-NH3Y4YC7.js");
-    case "proteomeCohortCompare":
-      return await import("./proteomeCohortCompare-7G2F35H5.js");
-    case "ProteomeInput":
-      return await import("./ProteomeInput-HIS4GYWH.js");
-    case "regression":
-      return await import("./Regression-C5GZYLEN.js");
-    case "report":
-      return await import("./report-6JXJVSEB.js");
-    case "runChart2":
-    //See frequencyChart
-    case "frequencyChart":
-      return await import("./RunChart2-X5WKYLPQ.js");
-    case "sampleView":
-      return await import("./sampleView-SG3QYZKQ.js");
-    case "sampleScatter":
-      return await import("./scatter-RHUVER53.js");
-    case "sc":
-      return await import("./SC-3Y5J65DT.js");
-    case "studyCatalog":
-      return await import("./studyCatalog-TAXRF5NS.js");
-    case "summarizeCnvGeneexp":
-      return await import("./summarizeCnvGeneexp-3QLHU6N7.js");
-    case "summarizeGeneexpSurvival":
-      return await import("./summarizeGeneexpSurvival-ARI4MPFX.js");
-    case "summarizeMutationDiagnosis":
-      return await import("./summarizeMutationDiagnosis-GCL4SRON.js");
-    case "summarizeMutationSurvival":
-      return await import("./summarizeMutationSurvival-6TTMSRRX.js");
-    case "summarizeMutationCnv":
-      return await import("./summarizeMutationCnv-W7V7CKPI.js");
-    case "summaryInput":
-      return await import("./summaryInput-UK3TLC7M.js");
-    case "summary":
-      return await import("./summary-OUYDWLBF.js");
-    case "survival":
-      return await import("./survival-TL6UZ6FQ.js");
-    case "table":
-      return await import("./table-IAQ6J4DO.js");
-    case "violin":
-      return await import("./Violin-F3QS2EMJ.js");
-    case "volcano":
-      return await import("./Volcano-ZNYDKP2O.js");
-    case "wsi":
-      return await import("./Wsi-B6EIGTI2.js");
-    default:
-      if (notFoundMessage) throw notFoundMessage;
-      return await globImport_plots_js(`../plots/${chartType}.js`);
-  }
-}
-
-export {
-  importPlot
-};
-//# sourceMappingURL=chunk-HPAW7XDM.js.map

package/dist/chunk-HPAW7XDM.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../plots/importPlot.js"],
-  "sourcesContent": ["export async function importPlot(chartType, notFoundMessage = '') {\n\t// TODO: move to dynamic import of exact plot names here, instead of string-pattern,\n\t// so that the bundler does not have to guess code file extension, directory names and letter casing\n\tswitch (chartType) {\n\t\tcase 'aggregateMatrix':\n\t\t\treturn await import('./aggregateMatrix/AggregateMatrix.ts')\n\n\t\tcase 'aggMatrixInput':\n\t\t\treturn await import('./AggMatrixInput.ts')\n\n\t\tcase 'animatedBubbleChart':\n\t\t\treturn await import(`./animatedBubbleChart.ts`)\n\n\t\tcase 'brainImaging':\n\t\t\treturn await import('./brainImaging.ts')\n\n\t\tcase 'brainRegions':\n\t\t\treturn await import('./brainRegions.ts')\n\n\t\tcase 'barchart':\n\t\t\treturn await import(`./barchart/barchart.ts`)\n\n\t\tcase 'boxplot':\n\t\t\treturn await import(`./boxplot/BoxPlot.ts`)\n\n\t\tcase 'bubbleHeatmap':\n\t\t\treturn await import('./bubbleHeatmap.ts')\n\n\t\tcase 'cellTypeBubbleHeatmap':\n\t\t\treturn await import('./cellTypeBubbleHeatmap.ts')\n\n\t\tcase 'correlationVolcano':\n\t\t\treturn await import(`./corrVolcano/CorrelationVolcano.ts`)\n\n\t\tcase 'cuminc':\n\t\t\treturn await import(`./cuminc/Cuminc.ts`)\n\n\t\tcase 'dataDownload':\n\t\t\treturn await import(`./dataDownload.ts`)\n\n\t\tcase 'DEinput':\n\t\t\treturn await import(`./DEinput.ts`)\n\n\t\tcase 'dictionary':\n\t\t\treturn await import(`./dictionary.js`)\n\n\t\tcase 'differentialAnalysis':\n\t\t\treturn await import(`./diffAnalysis/DifferentialAnalysis.ts`)\n\n\t\tcase 'Disco':\n\t\t\treturn await import('./disco/Disco.ts')\n\n\t\tcase 'dmr':\n\t\t\treturn await import('./dmr/DmrPlot.ts')\n\n\t\tcase 'facet':\n\t\t\treturn await import('./facet.ts')\n\n\t\tcase 'GeneExpInput':\n\t\t\treturn await import(`./GeneExpInput.ts`)\n\n\t\tcase 'geneRanking':\n\t\t\treturn await import(`./geneRanking.ts`)\n\n\t\tcase 'genomeBrowser':\n\t\t\treturn await import('./gb/GB.ts')\n\n\t\tcase 'geomap':\n\t\t\treturn await import('./geomap/Geomap.ts')\n\n\t\tcase 'grin2':\n\t\t\treturn await import('./grin2/grin2.ts')\n\n\t\tcase 'gsea':\n\t\t\treturn await import(`./gsea/GSEA.ts`)\n\n\t\tcase 'imagePlot':\n\t\t\treturn await import('./imagePlot.ts')\n\n\t\tcase 'numericDictTermCluster':\n\t\t\treturn await import(`./numericDictTermCluster.ts`)\n\n\t\tcase 'profileBarchart2':\n\t\t\treturn await import('./profile/barchart2.ts')\n\n\t\tcase 'profileForms':\n\t\t\treturn await import('./profile/profileForms.ts')\n\n\t\tcase 'profilePlot':\n\t\t\treturn await import('./profile/profilePlot.ts')\n\n\t\tcase 'profilePolar2':\n\t\t\treturn await import('./profile/polar2.ts')\n\n\t\tcase 'profileRadar2':\n\t\t\treturn await import('./profile/radar2.ts')\n\n\t\tcase 'profileRadarFacility2':\n\t\t\treturn await import('./profile/radarFacility2.ts')\n\n\t\tcase 'proteinView':\n\t\t\treturn await import(`./proteinView.ts`)\n\n\t\tcase 'proteomeAbundance':\n\t\t\treturn await import(`./proteomeAbundance.ts`)\n\n\t\tcase 'proteomeCohortCompare':\n\t\t\treturn await import('./proteomeCohortCompare.ts')\n\n\t\tcase 'ProteomeInput':\n\t\t\treturn await import('./ProteomeInput.ts')\n\n\t\tcase 'regression':\n\t\t\treturn await import(`./regression/Regression.ts`)\n\n\t\tcase 'report':\n\t\t\treturn await import(`./report/report.ts`)\n\n\t\tcase 'runChart2': //See frequencyChart\n\t\tcase 'frequencyChart':\n\t\t\treturn await import(`./runChart2/RunChart2.ts`)\n\n\t\tcase 'sampleView':\n\t\t\treturn await import(`./sampleView.ts`)\n\n\t\tcase 'sampleScatter':\n\t\t\treturn await import(`./scatter/scatter.js`)\n\n\t\tcase 'sc':\n\t\t\treturn await import('./sc/SC.ts')\n\n\t\tcase 'studyCatalog':\n\t\t\treturn await import('./studyCatalog.ts')\n\n\t\tcase 'summarizeCnvGeneexp':\n\t\t\treturn await import(`./summarizeCnvGeneexp.ts`)\n\n\t\tcase 'summarizeGeneexpSurvival':\n\t\t\treturn await import(`./summarizeGeneexpSurvival.ts`)\n\n\t\tcase 'summarizeMutationDiagnosis':\n\t\t\treturn await import(`./summarizeMutationDiagnosis.ts`)\n\n\t\tcase 'summarizeMutationSurvival':\n\t\t\treturn await import(`./summarizeMutationSurvival.ts`)\n\n\t\tcase 'summarizeMutationCnv':\n\t\t\treturn await import(`./summarizeMutationCnv.ts`)\n\n\t\tcase 'summaryInput':\n\t\t\treturn await import(`./summaryInput.ts`)\n\n\t\tcase 'summary':\n\t\t\treturn await import(`./summary.ts`)\n\n\t\tcase 'survival':\n\t\t\treturn await import(`./survival/survival.js`)\n\n\t\tcase 'table':\n\t\t\treturn await import(`./table.js`)\n\n\t\tcase 'violin':\n\t\t\treturn await import(`./violin/Violin.ts`)\n\n\t\tcase 'volcano':\n\t\t\treturn await import(`./volcano/Volcano.ts`)\n\n\t\tcase 'wsi':\n\t\t\treturn await import('./w2/Wsi.ts')\n\n\t\tdefault:\n\t\t\t// temporary option to force an error, to bypass the default filename matching\n\t\t\tif (notFoundMessage) throw notFoundMessage\n\n\t\t\t// TODO: should always throw here once all chart types are handled separately as cases;\n\t\t\t// the pattern matching below is problematic because:\n\t\t\t// - it matches non-plot code file names\n\t\t\t// - it assumes a non-typescript, .js file extension\n\t\t\t// - it doesn't handle plot code that are organized under its own subdirectory\n\t\t\treturn await import(`../plots/${chartType}.js`)\n\t}\n}\n"],
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-  "names": []
-}

package/dist/chunk-IV57XNTG.js

@@ -1,123 +0,0 @@
-import {
-  pickCollectionFraction,
-  renderTable
-} from "./chunk-PC4MFDHP.js";
-
-// termdb/handlers/termCollection.ts
-var SearchHandler = class {
-  async init(opts) {
-    this.callback = opts.callback;
-    this.app = opts.app;
-    opts.holder.style("display", "");
-    const termlst = opts.details.termlst ?? [];
-    const memberType = opts.details.memberType || opts.details.type;
-    if (opts.termCollectionSelectionMode === "fraction" && memberType === "numeric") {
-      pickCollectionFraction({
-        holder: opts.holder,
-        term: makeTerm(opts.details, termlst, opts.usecase),
-        callback: (tw) => opts.callback(tw)
-      });
-      return;
-    }
-    const tableDiv = opts.holder.append("div");
-    renderTable({
-      columns: [{ label: "VARIABLES" }],
-      rows: termlst.map((t) => {
-        return [{ value: t.name }];
-      }),
-      div: tableDiv,
-      maxWidth: "30vw",
-      maxHeight: "40vh",
-      // the button is disabled while the selection cannot be submitted
-      noButtonCallback: () => updateSelectBtn(),
-      striped: false,
-      showHeader: true,
-      //false,
-      selectAll: true,
-      columnButtons: void 0,
-      //Leave until table.js is typed
-      buttons: void 0
-    });
-    let categoryTable;
-    let ckSource = [];
-    if (opts.details.categoryKeys) {
-      ckSource = opts.details.categoryKeys;
-      const categoryDiv = opts.holder.append("div").style("margin-top", "15px");
-      const values = opts.details.termlst[0].values || {};
-      categoryTable = categoryDiv.append("div");
-      renderTable({
-        columns: [{ label: "CATEGORIES" }],
-        rows: ckSource.map((ck) => {
-          return [{ value: values[ck.key]?.label ?? ck.key, checked: ck.shown }];
-        }),
-        div: categoryTable,
-        maxWidth: "30vw",
-        maxHeight: "40vh",
-        noButtonCallback: () => updateSelectBtn(),
-        striped: false,
-        showHeader: true,
-        //false,
-        selectAll: true,
-        columnButtons: void 0,
-        //Leave until table.js is typed
-        buttons: void 0
-      });
-    }
-    function getRowChecks(div) {
-      const trs = div.select("table").select("tbody").node().querySelectorAll("tr");
-      return [...trs].map((tr) => tr.querySelectorAll("td")[1]?.querySelector("input")?.checked === true);
-    }
-    function getSelectedTermlst() {
-      const checked = getRowChecks(tableDiv);
-      return termlst.filter((term, i) => checked[i]);
-    }
-    function getCategoryKeys() {
-      if (!categoryTable) return void 0;
-      const checked = getRowChecks(categoryTable);
-      return ckSource.map((ck, i) => ({ key: ck.key, shown: checked[i] }));
-    }
-    function getSelectionError() {
-      if (getSelectedTermlst().length < 2) return "Select at least two variables.";
-      if (getCategoryKeys()?.every((ck) => !ck.shown)) return "Select at least one category.";
-      return void 0;
-    }
-    function updateSelectBtn() {
-      if (!selectBtn) return;
-      const error = getSelectionError();
-      selectBtn.property("disabled", Boolean(error)).attr("title", error || null);
-    }
-    const selectBtn = opts.holder.append("div").style("float", "right").style("padding", "6px 20px").append("button").attr("data-testid", "sjpp-term-collection-select").text("Select").on("click", () => {
-      opts.callback({
-        // makeTerm() extracts propsByTermId (color, etc) for the selected terms
-        ...makeTerm(opts.details, getSelectedTermlst(), opts.usecase),
-        categoryKeys: getCategoryKeys()
-      });
-    });
-    updateSelectBtn();
-  }
-};
-function makeTerm(details, termlst, usecase) {
-  const propsByTermId = {};
-  if (details.propsByTermId) {
-    for (const term of termlst) {
-      if (details.propsByTermId[term.id]) propsByTermId[term.id] = details.propsByTermId[term.id];
-    }
-  }
-  return {
-    type: "termCollection",
-    termIds: termlst.map((term) => term.id),
-    termlst,
-    name: details.name,
-    valueTransform: details.valueTransformByPlots?.[usecase?.target],
-    // memberType = ds.cohort.termdb.termCollections[].type for client code
-    memberType: details.memberType || details.type,
-    categoryKeys: details.categoryKeys,
-    isleaf: true,
-    propsByTermId
-  };
-}
-
-export {
-  SearchHandler
-};
-//# sourceMappingURL=chunk-IV57XNTG.js.map

package/dist/chunk-JMAFJKGG.js

@@ -1,243 +0,0 @@
-import {
-  keyupEnter
-} from "./chunk-PC4MFDHP.js";
-import {
-  get_bin_label,
-  get_bin_range_equation
-} from "./chunk-52QHIKH2.js";
-import {
-  toStoredUnit,
-  toUserUnit
-} from "./chunk-W5J3LTYS.js";
-
-// termsetting/handlers/NumCustomBinEditor.ts
-var NumCustomBinEditor = class {
-  constructor(editHandler) {
-    this.dom = {};
-    this.editHandler = editHandler;
-    this.opts = editHandler.opts;
-    this.tw = editHandler.tw;
-    this.termsetting = editHandler.termsetting;
-  }
-  /* bin boundaries are stored in the term's own unit but entered and shown in its user-facing one.
-  both are identity functions unless the term declares valueConversion{} */
-  toDisplay(v) {
-    return toUserUnit(v, this.tw.term);
-  }
-  toStored(v) {
-    return toStoredUnit(v, this.tw.term);
-  }
-  async render(div) {
-    this.tw = this.editHandler.tw;
-    const isRemounting = !!this.dom.inputsDiv && this.editHandler.dom.binsDiv?.node().contains(this.dom.inputsDiv.node());
-    if (!isRemounting) this.q = this.getDefaultQ();
-    await this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-    if (isRemounting) return;
-    if (this.dom.inputsDiv) {
-      this.dom.inputsDiv.remove();
-      delete this.dom.inputsDiv;
-    }
-    this.dom.inputsDiv = div.append("div").style("display", "flex").style("width", "100%");
-    this.renderCustomBinInputs();
-  }
-  getBoundaryOpts() {
-    return {
-      values: this.q.lst.slice(1).map((bin) => ({ x: this.toDisplay(bin.startunbounded ? bin.stop : bin.start), isDraggable: true })),
-      // the dragged value arrives in display units, matching what the textarea holds
-      callback: (d, value) => {
-        const boundaryValues = this.q.lst.slice(1).map((d2) => "start" in d2 ? this.toDisplay(d2.start) : "");
-        boundaryValues[d.index] = value;
-        this.dom.customBinBoundaryInput.property("value", boundaryValues.join("\n"));
-        this.handleInputChange("drag");
-        return 0;
-      }
-    };
-  }
-  getDefaultQ() {
-    if (this.tw.q.mode == "discrete" && this.tw.q.type == "custom-bin") {
-      const copy = JSON.parse(JSON.stringify(this.tw.q));
-      copy.lst.forEach((bin) => {
-        if (!bin.label) bin.label = get_bin_label(bin, this.tw.q, this.tw.term.valueConversion);
-        bin.range = get_bin_range_equation(bin, this.tw.q, this.tw.term.valueConversion);
-      });
-      return copy;
-    }
-    const { min, max } = this.editHandler.handler.density_data;
-    const defaultCustomBoundary = (
-      /* when no sample is annotated by this term,
-      minvalue and maxvalue are both null
-      setting defaultCustomBoundary to arbitrary "0" will allow existing UI to work
-      but remains to be evaluated if is really okay to use 0
-      */
-      !Number.isFinite(min) || !Number.isFinite(max) ? 0 : (
-        // minvalue and maxvalue is valid number
-        max != min ? min + (max - min) / 2 : max
-      )
-    );
-    const firstBin = {
-      startunbounded: true,
-      startinclusive: false,
-      stopinclusive: false,
-      stop: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
-    };
-    const lastBin = {
-      stopunbounded: true,
-      startinclusive: true,
-      stopinclusive: false,
-      start: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
-    };
-    return {
-      mode: "discrete",
-      type: "custom-bin",
-      lst: [
-        // Type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' is not assignable to type 'StartUnboundedBin | FullyBoundedBin'.
-        // Property 'start' is missing in type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' but required in type 'FullyBoundedBin'.
-        {
-          ...firstBin,
-          label: get_bin_label(firstBin, this.tw.q, this.tw.term.valueConversion),
-          range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
-        },
-        {
-          ...lastBin,
-          label: get_bin_label(lastBin, this.tw.q, this.tw.term.valueConversion),
-          range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
-        }
-        //satisfies StopUnboundedBin
-      ]
-    };
-  }
-  /******************* Functions for Numerical Custom size bins *******************/
-  renderCustomBinInputs() {
-    const q = this.q;
-    const boundaryDiv = this.dom.inputsDiv.append("div").style("margin-right", "20px");
-    this.dom.rangeAndLabelDiv = this.dom.inputsDiv.append("div");
-    boundaryDiv.append("div").style("margin-bottom", "5px").style("color", "rgb(136, 136, 136)").text("Bin boundaries");
-    this.dom.customBinBoundaryInput = boundaryDiv.append("textarea").style("width", "100px").style("height", "70px").text(
-      q.lst.slice(1).map((d) => "start" in d ? this.toDisplay(d.start) : "").join("\n")
-    ).on("change", () => this.handleInputChange()).on("keyup", async (event) => {
-      if (!keyupEnter(event) && event.key != 8 && event.key != "Enter") return;
-      if (!this.dom.inputsDiv.selectAll("input").node().value) return;
-      this.handleInputChange();
-    });
-    boundaryDiv.append("div").style("font-size", ".6em").style("margin-left", "1px").style("color", "#858585").html("Enter numeric values </br>seperated by ENTER");
-    this.renderBoundaryInputDivs();
-  }
-  renderBoundaryInputDivs() {
-    const data = this.q.lst;
-    const holder = this.dom.rangeAndLabelDiv;
-    holder.selectAll("*").remove();
-    const grid = holder.append("div").style("display", "grid").style("grid-template-columns", "auto auto").style("column-gap", "20px").style("align-items", "center");
-    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Range");
-    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Bin label");
-    for (const d of data) {
-      grid.append("div").attr("name", "range").html(d.range);
-      grid.append("div").append("input").attr("type", "text").style("margin", "2px 0px").property("value", d.label).on("change", function() {
-        d.label = this.value;
-      });
-    }
-    this.dom.customBinRanges = this.dom.inputsDiv.selectAll('div[name="range"]').data(data);
-    this.dom.customBinLabelInput = this.dom.inputsDiv.selectAll("input").data(data);
-  }
-  handleInputChange(eventType = "") {
-    const self = this.tw;
-    const inputs = this.dom.inputsDiv.selectAll("input");
-    inputs.property("value", "");
-    const data = this.processCustomBinInputs();
-    if (data == void 0) {
-      return;
-    }
-    if (self.q.hiddenValues) this.tw.q.hiddenValues = self.q.hiddenValues;
-    if (this.binsChanged(data, this.q.lst)) {
-      this.q.lst = data;
-    }
-    this.renderBoundaryInputDivs();
-    if (eventType != "drag") this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-  binsChanged(data, qlst) {
-    if (data.length != qlst.length) return true;
-    if (Object.keys(data[0]).length !== Object.keys(qlst[0]).length) return true;
-    for (const [i, bin] of qlst.entries()) {
-      for (const k of Object.keys(bin)) {
-        if (bin[k] && bin[k] !== data[i][k]) {
-          return true;
-        }
-      }
-    }
-    return false;
-  }
-  processCustomBinInputs() {
-    const self = this.termsetting;
-    const startinclusive = this.editHandler.boundaryInclusion == "startinclusive";
-    const stopinclusive = this.editHandler.boundaryInclusion == "stopinclusive";
-    const inputs = this.dom.inputsDiv.node().querySelectorAll("input");
-    const inputData = this.dom.customBinBoundaryInput.property("value").split("\n").filter((d) => d != "" && !isNaN(d));
-    const trackBins = new Set(inputData);
-    if (!trackBins.size) return this.tw.q.lst;
-    const sortedBins = Array.from(trackBins).map((v) => this.toStored(Number(v))).sort((a, b) => a - b);
-    const data = [
-      // first bin: StartUnbounded type
-      {
-        startunbounded: true,
-        stop: sortedBins[0],
-        startinclusive: false,
-        stopinclusive,
-        label: inputs[0].value
-      }
-    ];
-    if (!data[0].label) data[0].label = get_bin_label(data[0], self.q, self.term.valueConversion);
-    if (!data[0].range) data[0].range = get_bin_range_equation(data[0], self.q, self.term.valueConversion);
-    for (const [i, d] of sortedBins.entries()) {
-      let bin;
-      const label = inputs[i + 1]?.value || "";
-      if (i !== trackBins.size - 1) {
-        bin = {
-          start: +d,
-          startinclusive,
-          stopinclusive,
-          stop: sortedBins[i + 1],
-          label
-          //range: ''
-        };
-      } else {
-        bin = {
-          start: +d,
-          startinclusive,
-          stopinclusive: false,
-          stopunbounded: true,
-          label
-          //range: ''
-        };
-      }
-      if (bin.label === "" || bin.label === void 0) bin.label = get_bin_label(bin, self.q, self.term.valueConversion);
-      if (bin.range === "" || bin.range === void 0)
-        bin.range = get_bin_range_equation(bin, self.q, self.term.valueConversion);
-      data.push(bin);
-    }
-    return data;
-  }
-  getEditedQ(destroyDom = true) {
-    const lst = this.processCustomBinInputs();
-    if (destroyDom) {
-      for (const name of Object.keys(this.dom)) {
-        this.dom[name].remove();
-        delete this.dom[name];
-      }
-    }
-    return {
-      mode: "discrete",
-      type: "custom-bin",
-      lst
-    };
-  }
-  undoEdits() {
-    this.q = this.getDefaultQ();
-    this.dom.inputsDiv.selectAll("*").remove();
-    this.renderCustomBinInputs();
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-};
-
-export {
-  NumCustomBinEditor
-};
-//# sourceMappingURL=chunk-JMAFJKGG.js.map