@sjcrh/proteinpaint-client 2.204.0 → 2.205.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-ZQ7ACPAD.js +1367 -0
- package/dist/AggMatrixInput-EACGUIQA.js +277 -0
- package/dist/AggregateMatrix-TC5DTSYN.js +41 -0
- package/dist/AppHeader-PHI6US5B.js +830 -0
- package/dist/BoxPlot-QWKK3IJ7.js +1211 -0
- package/dist/CorrelationVolcano-QJJN7FVP.js +614 -0
- package/dist/Cuminc-6F2C5C4E.js +1219 -0
- package/dist/DE-HRJH6ZQL.js +89 -0
- package/dist/DE-HRJH6ZQL.js.map +7 -0
- package/dist/DEinput-T3MPAYPH.js +499 -0
- package/dist/DEinput-T3MPAYPH.js.map +7 -0
- package/dist/DM-PEG4ED2X.js +90 -0
- package/dist/DM-PEG4ED2X.js.map +7 -0
- package/dist/DifferentialAnalysis-XGXHWGPI.js +237 -0
- package/dist/Disco-7SRTTB3X.js +3389 -0
- package/dist/Disco.UI-CKKZ5MMK.js +243 -0
- package/dist/DmrPlot-N4CT4J2I.js +637 -0
- package/dist/GB-NVCLPRWN.js +1391 -0
- package/dist/GSEA-UZUNJG7Z.js +851 -0
- package/dist/GeneExpInput-3MDN2CAW.js +362 -0
- package/dist/Geomap-ZUF2PE5A.js +84 -0
- package/dist/HicApp-OIJT5TFU.js +2245 -0
- package/dist/IDCViewer-ZSH2E57L.js +10812 -0
- package/dist/NumBinaryEditor-74ZPGT7L.js +279 -0
- package/dist/NumBinaryEditor.unit.spec-T2I66SO5.js +312 -0
- package/dist/NumContEditor-M2GARZXM.js +105 -0
- package/dist/NumContEditor.unit.spec-G2QBBNH7.js +164 -0
- package/dist/NumCustomBinEditor-P44G67KS.js +33 -0
- package/dist/NumCustomBinEditor.unit.spec-AZHJN3V6.js +397 -0
- package/dist/NumDiscreteEditor-VOZ63LZY.js +170 -0
- package/dist/NumDiscreteEditor.unit.spec-CFSVPNBA.js +233 -0
- package/dist/NumRegularBinEditor-I6GJQR7W.js +33 -0
- package/dist/NumRegularBinEditor.unit.spec-IDJE7H6S.js +278 -0
- package/dist/NumSplineEditor-BCGWE52A.js +210 -0
- package/dist/NumSplineEditor.unit.spec-YQAL7L2E.js +224 -0
- package/dist/NumericDensity-P25W63RV.js +33 -0
- package/dist/NumericDensity.unit.spec-N7CQ5W5L.js +418 -0
- package/dist/NumericHandler-R7JWIFEO.js +34 -0
- package/dist/NumericHandler.unit.spec-LMGIAGZJ.js +214 -0
- package/dist/ProteomeInput-PRYKKF5E.js +388 -0
- package/dist/Regression-PSHH7ZXN.js +1416 -0
- package/dist/RunChart2-KJ2UWVCE.js +749 -0
- package/dist/SC-R6ZIJZ6F.js +1107 -0
- package/dist/Violin-GTQAUJ7B.js +1082 -0
- package/dist/Volcano-NER64J7W.js +1649 -0
- package/dist/Volcano-NER64J7W.js.map +7 -0
- package/dist/Wsi-GXNGL7O6.js +431 -0
- package/dist/adSandbox-SXSHVG4P.js +33 -0
- package/dist/animatedBubbleChart-Q4NEETEH.js +547 -0
- package/dist/app-MX4PL2QO.js +42 -0
- package/dist/app-R5CTEVAC.js +32 -0
- package/dist/app.js +14 -14
- package/dist/bam-45N3FEEM.js +876 -0
- package/dist/barchart-YCTKQJQX.js +42 -0
- package/dist/barchart2-252GS3CA.js +309 -0
- package/dist/block-CR75JHV3.js +6249 -0
- package/dist/block.init-U3JMED2E.js +33 -0
- package/dist/block.mds.expressionrank-TAN3BDPS.js +354 -0
- package/dist/block.mds.geneboxplot-EN344GEP.js +823 -0
- package/dist/block.mds.junction-RFVVJUTR.js +1539 -0
- package/dist/block.mds.svcnv-SSUMXEWD.js +6796 -0
- package/dist/block.svg-LRPGNFFI.js +159 -0
- package/dist/block.tk.aicheck-YY23FT2G.js +278 -0
- package/dist/block.tk.ase-JCGPFKFT.js +360 -0
- package/dist/block.tk.bam-NZDC4H7Y.js +1901 -0
- package/dist/block.tk.bedgraphdot-NCNZPZH6.js +379 -0
- package/dist/block.tk.bigwig.ui-Z7G6ZITU.js +206 -0
- package/dist/block.tk.hicstraw-VVDP4UF5.js +818 -0
- package/dist/block.tk.junction-L4YBPAHM.js +2358 -0
- package/dist/block.tk.junction.textmatrixui-6CMKKUB5.js +194 -0
- package/dist/block.tk.ld-VCP2R5UO.js +94 -0
- package/dist/block.tk.menu-ZJYGMEDX.js +1024 -0
- package/dist/block.tk.pgv-M5WNUIVS.js +938 -0
- package/dist/brainImaging-JGECJHZO.js +515 -0
- package/dist/brainRegions-NTEAXNZJ.js +234 -0
- package/dist/brainRegions-NTEAXNZJ.js.map +7 -0
- package/dist/bubbleHeatmap-7DQNWBQ2.js +378 -0
- package/dist/cellTypeBubbleHeatmap-LAE7U3RF.js +278 -0
- package/dist/chunk-2AQT3ZWL.js +626 -0
- package/dist/chunk-2GLNPB5J.js +203 -0
- package/dist/chunk-2O4CS3EZ.js +274 -0
- package/dist/chunk-2Z4ZSINZ.js +323 -0
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- package/dist/chunk-3PHXBY3Z.js +1275 -0
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- package/dist/chunk-KAFDQKN7.js +1720 -0
- package/dist/chunk-L743GRJE.js +783 -0
- package/dist/chunk-L743GRJE.js.map +7 -0
- package/dist/chunk-LGOTIL62.js +54 -0
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- package/dist/chunk-NFAE6VNU.js +2327 -0
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- package/dist/chunk-NXVUL3EY.js +2853 -0
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- package/dist/chunk-ODMLC5FN.js +55 -0
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- package/dist/chunk-WTAPOH2W.js +22699 -0
- package/dist/chunk-WTAPOH2W.js.map +7 -0
- package/dist/chunk-XKL2D2NN.js +240 -0
- package/dist/chunk-XXJT7DSL.js +677 -0
- package/dist/chunk-YHA3AYAM.js +5071 -0
- package/dist/chunk-YN5NY3D3.js +339 -0
- package/dist/chunk-YX6FIREB.js +14 -0
- package/dist/chunk-ZXU4ALLZ.js +129 -0
- package/dist/cohort-75FUW3UO.js +70 -0
- package/dist/condition-VW43Q6ZE.js +327 -0
- package/dist/controls-HOP2AFHD.js +34 -0
- package/dist/controls.config-CMIFSKQE.js +34 -0
- package/dist/correlation-PN7BS5OR.js +95 -0
- package/dist/customdata.inputui-ZBZX63PS.js +284 -0
- package/dist/dataDownload-LGA4LAUF.js +329 -0
- package/dist/databrowser.ui-IQRDVL66.js +425 -0
- package/dist/dictionary-BPWD77LJ.js +113 -0
- package/dist/dnaMethylation-A3XPPBBB.js +33 -0
- package/dist/dnaMethylation.integration.spec-554ITDQC.js +198 -0
- package/dist/dofetch-FQ42AX7C.js +48 -0
- package/dist/e2pca-F3GWG7WZ.js +344 -0
- package/dist/ep-QAVN472H.js +1249 -0
- package/dist/expclust.gdc.spec-DQNX7FTL.js +302 -0
- package/dist/facet-DH7OOZTJ.js +519 -0
- package/dist/gb-OCXOLAMD.js +81 -0
- package/dist/geneExpClustering-DWYRZGTS.js +244 -0
- package/dist/geneExpression-2NKSKZR6.js +33 -0
- package/dist/geneExpression-BGFR3KQE.js +310 -0
- package/dist/geneExpression.unit.spec-63EKKMET.js +99 -0
- package/dist/geneORA-BED6XL4D.js +273 -0
- package/dist/geneRanking-UB5RCQNP.js +548 -0
- package/dist/geneVariant-WJEONTTY.js +286 -0
- package/dist/geneVariant-Y4C2FPJK.js +36 -0
- package/dist/geneVariant.integration.spec-VFYLC47N.js +388 -0
- package/dist/genefusion.ui-P3NBIMLE.js +303 -0
- package/dist/geneset-O22RQAED.js +203 -0
- package/dist/genomeBrowser.spec-MM7WZUGI.js +276 -0
- package/dist/grin2-3YBIRKUT.js +70 -0
- package/dist/grin2-O637DNDS.js +1137 -0
- package/dist/hierCluster-3X3BQVNE.js +59 -0
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- package/dist/hierCluster.config-XFUOLLDK.js +36 -0
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- package/dist/isoformExpression-RYIZQIVX.js +35 -0
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- package/dist/launch.adhoc-FAHRZFYG.js +37 -0
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- package/dist/lollipop-VWGJUHNX.js +166 -0
- package/dist/maf-W52H44WK.js +455 -0
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- package/dist/matrix-CEVGKXSK.js +54 -0
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- package/dist/multivalue-MDQY64EH.js +83 -0
- package/dist/numericDictTermCluster-E73TJCLI.js +63 -0
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profilePlot
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// plots/profile/renderImpressionThermometer.ts
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var FALLBACK_COLOR = "#888";
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function impressionTestIdSuffix(groupLabel) {
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return `M ${xL} ${CAP_Y} A ${TUBE_HALF} ${TUBE_HALF} 0 0 1 ${xR} ${CAP_Y} L ${xR} ${neckY} A ${NECK_R} ${NECK_R} 0 0 0 ${round(CENTER_X + tx)} ${round(ty)} A ${BULB_R} ${BULB_R} 0 1 1 ${round(CENTER_X - tx)} ${round(ty)} A ${NECK_R} ${NECK_R} 0 0 0 ${xL} ${neckY} Z`;
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return `M ${x} ${yBottom} L ${x} ${yTop + r} A ${r} ${r} 0 0 1 ${x + w} ${yTop + r} L ${x + w} ${yBottom} Z`;
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var BAR_JOIN_Y = BULB_CY - Math.sqrt(BULB_R ** 2 - BAR_W ** 2);
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return `M ${CENTER_X} ${round(domeY)} A ${r} ${r} 0 0 ${domeSweep} ${colOuter} ${round(domeY)} L ${colOuter} ${round(BAR_JOIN_Y)} A ${BULB_R} ${BULB_R} 0 0 ${bulbSweep} ${CENTER_X} ${round(BULB_BOTTOM)} L ${CENTER_X} ${round(domeY)} Z`;
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}
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function renderImpressionThermometer(a) {
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const maxScore = IMPRESSION_MAX_SCORE;
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const scColor = a.colors?.sc || FALLBACK_COLOR;
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const svg = a.holder.append("svg").attr("data-testid", `sjpp-profileForms-thermometer-${impressionTestIdSuffix(a.groupLabel)}`).attr("width", SVG_W).attr("height", SVG_H);
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const sortedZones = [...a.zones].sort((z1, z2) => z1.min - z2.min);
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const sheen = defs.append("linearGradient").attr("id", sheenId).attr("x1", "0").attr("y1", "0").attr("x2", "0").attr("y2", "1");
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sheen.append("stop").attr("offset", "0%").attr("stop-color", "#fff").attr("stop-opacity", 0.04);
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sheen.append("stop").attr("offset", "45%").attr("stop-color", "#fff").attr("stop-opacity", 0.07);
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sheen.append("stop").attr("offset", "100%").attr("stop-color", "#000").attr("stop-opacity", 0.1);
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const barGlossId = `${a.id}-bar-gloss`;
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const barGloss = defs.append("linearGradient").attr("id", barGlossId).attr("x1", "0").attr("y1", "0").attr("x2", "1").attr("y2", "0");
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barGloss.append("stop").attr("offset", "0%").attr("stop-color", "#fff").attr("stop-opacity", 0.04);
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barGloss.append("stop").attr("offset", "20%").attr("stop-color", "#fff").attr("stop-opacity", 0.2);
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barGloss.append("stop").attr("offset", "38%").attr("stop-color", "#fff").attr("stop-opacity", 0.03);
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barGloss.append("stop").attr("offset", "100%").attr("stop-color", "#000").attr("stop-opacity", 0.18);
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const innerShadeId = `${a.id}-inner-shade`;
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const innerShade = defs.append("linearGradient").attr("id", innerShadeId).attr("gradientUnits", "userSpaceOnUse").attr("x1", CENTER_X - BULB_R).attr("y1", 0).attr("x2", CENTER_X + BULB_R).attr("y2", 0);
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innerShade.append("stop").attr("offset", "0%").attr("stop-color", "#000").attr("stop-opacity", 0.22);
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innerShade.append("stop").attr("offset", "16%").attr("stop-color", "#000").attr("stop-opacity", 0);
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innerShade.append("stop").attr("offset", "84%").attr("stop-color", "#000").attr("stop-opacity", 0);
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innerShade.append("stop").attr("offset", "100%").attr("stop-color", "#000").attr("stop-opacity", 0.26);
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const bulbShadeId = `${a.id}-bulb-shade`;
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const shade = defs.append("radialGradient").attr("id", bulbShadeId).attr("cx", "50%").attr("cy", "50%").attr("r", "50%");
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shade.append("stop").attr("offset", "55%").attr("stop-color", "#000").attr("stop-opacity", 0);
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shade.append("stop").attr("offset", "100%").attr("stop-color", "#000").attr("stop-opacity", 0.3);
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const bulbGlossId = `${a.id}-bulb-gloss`;
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const gloss = defs.append("radialGradient").attr("id", bulbGlossId).attr("cx", "36%").attr("cy", "30%").attr("r", "45%");
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gloss.append("stop").attr("offset", "0%").attr("stop-color", "#fff").attr("stop-opacity", 0.6);
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gloss.append("stop").attr("offset", "70%").attr("stop-color", "#fff").attr("stop-opacity", 0.06);
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gloss.append("stop").attr("offset", "100%").attr("stop-color", "#fff").attr("stop-opacity", 0);
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const vesselClipId = `${a.id}-vessel-clip`;
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defs.append("clipPath").attr("id", vesselClipId).append("path").attr("d", vessel);
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const inVessel = () => root.append("g").attr("clip-path", `url(#${vesselClipId})`);
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const boxX = CENTER_X - BULB_R;
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const boxW = 2 * BULB_R;
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const boxY = TUBE_TOP;
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const boxH = BULB_BOTTOM - TUBE_TOP;
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const trackG = inVessel();
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sortedZones.forEach((z, i) => {
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const { top, bottom } = zoneExtent(z, i, sortedZones.length);
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trackG.append("rect").attr("class", "impression-zone").attr("x", boxX).attr("y", top).attr("width", boxW).attr("height", bottom - top).attr("fill", z.color).attr("opacity", 0.3);
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});
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172
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const liquidG = inVessel();
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173
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const scX = CENTER_X - BAR_W;
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174
|
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const pocX = CENTER_X;
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175
|
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if (scMedian != null) {
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176
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const scFill = liquidG.append("path").attr("class", "sc-fill").attr("data-testid", "sjpp-profileForms-sc-fill").attr("d", liquidPath(yOf(scMedian), "left")).attr("fill", scColor).style("transition", `fill ${HOVER_MS}ms ease-out`);
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a.attachTip(
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scFill,
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179
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`Site Coordinator median: ${scMedian} (n=${scTotal} ${scTotal === 1 ? "SC" : "SCs"})`,
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180
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hoverFill(scColor)
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181
|
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);
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182
|
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}
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183
|
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if (pocMedian != null) {
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184
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const pocFill = liquidG.append("path").attr("class", "poc-fill").attr("data-testid", "sjpp-profileForms-poc-fill").attr("d", liquidPath(yOf(pocMedian), "right")).attr("fill", POC_FILL).style("transition", `fill ${HOVER_MS}ms ease-out`);
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185
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a.attachTip(pocFill, `POC median: ${pocMedian} (n=${pocTotal} staff responses)`, hoverFill(POC_FILL));
|
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186
|
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}
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187
|
-
const overlay = () => inVessel().attr("pointer-events", "none");
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188
|
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const wet = overlay();
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189
|
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const columns = [];
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190
|
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if (scMedian != null) columns.push({ x: scX, median: scMedian });
|
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191
|
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if (pocMedian != null) columns.push({ x: pocX, median: pocMedian });
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192
|
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for (const c of columns) {
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193
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const d = barPath(c.x, yOf(c.median), BAR_W, BAR_JOIN_Y);
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194
|
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wet.append("path").attr("class", "liquid-gloss").attr("d", d).attr("fill", `url(#${sheenId})`);
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195
|
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wet.append("path").attr("class", "liquid-gloss").attr("d", d).attr("fill", `url(#${barGlossId})`);
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196
|
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}
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197
|
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const bulbShading = overlay();
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198
|
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bulbShading.append("circle").attr("cx", CENTER_X).attr("cy", BULB_CY).attr("r", BULB_R).attr("fill", `url(#${bulbShadeId})`);
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199
|
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bulbShading.append("circle").attr("cx", CENTER_X).attr("cy", BULB_CY).attr("r", BULB_R).attr("fill", `url(#${bulbGlossId})`);
|
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200
|
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overlay().append("rect").attr("x", boxX).attr("y", boxY).attr("width", boxW).attr("height", boxH).attr("fill", `url(#${innerShadeId})`);
|
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201
|
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root.append("path").attr("class", "vessel-outline").attr("d", vessel).attr("fill", "none").attr("stroke", "#444").attr("stroke-width", 2).attr("pointer-events", "none");
|
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202
|
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const ratings = [];
|
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203
|
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for (let r = 1; r <= maxScore; r++) ratings.push(r);
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204
|
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const axis = root.append("g").attr("transform", `translate(${TUBE_X}, 0)`).call(
|
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205
|
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axisLeft(yScale).tickValues(ratings).tickFormat((d) => String(d)).tickSize(-5).tickPadding(8)
|
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206
|
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);
|
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207
|
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axisstyle({ axis, showline: false, color: "#333" });
|
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208
|
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root.append("text").attr("transform", `translate(${TUBE_X - 32}, ${TUBE_TOP + TUBE_H / 2}) rotate(-90)`).attr("text-anchor", "middle").attr("font-size", "0.9rem").attr("font-weight", "bold").text(a.ratingAxisLabel);
|
|
209
|
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}
|
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210
|
-
|
|
211
|
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// plots/profile/renderResponseDistribution.ts
|
|
212
|
-
var POC_COLUMN_FILL = "#bdbdbd";
|
|
213
|
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var AXIS_COLOR = "#333";
|
|
214
|
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var POC_COLUMN_STROKE = "#616161";
|
|
215
|
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var SC_POINT_R = 5;
|
|
216
|
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var MARGIN = { top: 24, right: 64, bottom: 52, left: 64 };
|
|
217
|
-
var PLOT_W = 300;
|
|
218
|
-
var PLOT_H = 260;
|
|
219
|
-
function renderResponseDistribution(a) {
|
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220
|
-
const maxScore = a.maxScore;
|
|
221
|
-
const scColor = a.colors?.sc || "#888";
|
|
222
|
-
const ratings = [];
|
|
223
|
-
for (let r = 1; r <= maxScore; r++) ratings.push(r);
|
|
224
|
-
const scByRating = {};
|
|
225
|
-
for (const d of a.scDistribution || []) scByRating[d.rating] = d;
|
|
226
|
-
const pocByRating = {};
|
|
227
|
-
for (const d of a.pocDistribution || []) pocByRating[d.rating] = d;
|
|
228
|
-
const scTotal = (a.scDistribution || []).reduce((s, d) => s + (d.count || 0), 0);
|
|
229
|
-
const maxScCount = Math.max(1, ...ratings.map((r) => scByRating[r]?.count || 0));
|
|
230
|
-
const maxPocCount = Math.max(1, ...ratings.map((r) => pocByRating[r]?.count || 0));
|
|
231
|
-
const svgW = MARGIN.left + PLOT_W + MARGIN.right;
|
|
232
|
-
const svgH = MARGIN.top + PLOT_H + MARGIN.bottom;
|
|
233
|
-
const svg = a.holder.append("svg").attr("data-testid", `sjpp-profileForms-distribution-${impressionTestIdSuffix(a.groupLabel)}`).attr("width", svgW).attr("height", svgH);
|
|
234
|
-
const plot = svg.append("g").attr("transform", `translate(${MARGIN.left}, ${MARGIN.top})`);
|
|
235
|
-
const HEADROOM = 1.15;
|
|
236
|
-
const x = band().domain(ratings.map(String)).range([0, PLOT_W]).padding(0.2);
|
|
237
|
-
const yLeft = linear().domain([0, maxScCount * HEADROOM]).range([PLOT_H, 0]).nice();
|
|
238
|
-
const yRight = linear().domain([0, maxPocCount * HEADROOM]).range([PLOT_H, 0]).nice();
|
|
239
|
-
const bw = x.bandwidth();
|
|
240
|
-
const step = x.step();
|
|
241
|
-
for (const z of a.zones) {
|
|
242
|
-
const cMin = x(String(z.min));
|
|
243
|
-
const cMax = x(String(z.max));
|
|
244
|
-
if (cMin == null || cMax == null) continue;
|
|
245
|
-
const zStart = Math.max(0, cMin + bw / 2 - step / 2);
|
|
246
|
-
const zEnd = Math.min(PLOT_W, cMax + bw / 2 + step / 2);
|
|
247
|
-
plot.append("rect").attr("class", "impression-zone").attr("x", zStart).attr("y", 0).attr("width", zEnd - zStart).attr("height", PLOT_H).attr("fill", z.color).attr("opacity", 0.3);
|
|
248
|
-
}
|
|
249
|
-
for (const r of ratings) {
|
|
250
|
-
const bin = pocByRating[r];
|
|
251
|
-
const count = bin?.count || 0;
|
|
252
|
-
const bx = x(String(r));
|
|
253
|
-
if (bx == null) continue;
|
|
254
|
-
const col = plot.append("rect").attr("class", "poc-column").attr("x", bx).attr("y", yRight(count)).attr("width", x.bandwidth()).attr("height", PLOT_H - yRight(count)).attr("fill", POC_COLUMN_FILL).attr("stroke", POC_COLUMN_STROKE).attr("stroke-width", 0.5);
|
|
255
|
-
a.attachTip(col, `POC rating ${r}: ${count} response${count === 1 ? "" : "s"}`, {
|
|
256
|
-
on: { fill: "#8d8d8d" },
|
|
257
|
-
off: { fill: POC_COLUMN_FILL }
|
|
258
|
-
});
|
|
259
|
-
}
|
|
260
|
-
const cx = (r) => (x(String(r)) ?? 0) + x.bandwidth() / 2;
|
|
261
|
-
if (scTotal === 1) {
|
|
262
|
-
for (const r of ratings) {
|
|
263
|
-
const count = scByRating[r]?.count || 0;
|
|
264
|
-
if (count <= 0) continue;
|
|
265
|
-
const pt = plot.append("circle").attr("class", "sc-point").attr("cx", cx(r)).attr("cy", yLeft(count)).attr("r", SC_POINT_R).attr("fill", scColor);
|
|
266
|
-
a.attachTip(pt, `SC rating ${r}: ${count} response`, {
|
|
267
|
-
on: { stroke: "#222", "stroke-width": "1.5" },
|
|
268
|
-
off: { stroke: "none" }
|
|
269
|
-
});
|
|
270
|
-
}
|
|
271
|
-
} else {
|
|
272
|
-
const lineGen = line_default().x((r) => cx(r)).y((r) => yLeft(scByRating[r]?.count || 0));
|
|
273
|
-
plot.append("path").attr("class", "sc-line").attr("d", lineGen(ratings)).attr("fill", "none").attr("stroke", scColor).attr("stroke-width", 2);
|
|
274
|
-
for (const r of ratings) {
|
|
275
|
-
const count = scByRating[r]?.count || 0;
|
|
276
|
-
const pt = plot.append("circle").attr("class", "sc-point").attr("cx", cx(r)).attr("cy", yLeft(count)).attr("r", 3).attr("fill", scColor);
|
|
277
|
-
a.attachTip(pt, `SC rating ${r}: ${count} response${count === 1 ? "" : "s"}`, {
|
|
278
|
-
on: { stroke: "#222", "stroke-width": "1.5" },
|
|
279
|
-
off: { stroke: "none" }
|
|
280
|
-
});
|
|
281
|
-
}
|
|
282
|
-
}
|
|
283
|
-
const xAxis = plot.append("g").attr("transform", `translate(0, ${PLOT_H})`).call(axisBottom(x));
|
|
284
|
-
axisstyle({ axis: xAxis, showline: true, color: AXIS_COLOR });
|
|
285
|
-
const leftAxis = plot.append("g").call(axisLeft(yLeft).ticks(5));
|
|
286
|
-
axisstyle({ axis: leftAxis, showline: true, color: AXIS_COLOR });
|
|
287
|
-
const rightAxis = plot.append("g").attr("transform", `translate(${PLOT_W}, 0)`).call(axisRight(yRight).ticks(5));
|
|
288
|
-
axisstyle({ axis: rightAxis, showline: true, color: AXIS_COLOR });
|
|
289
|
-
plot.append("text").attr("transform", `translate(${PLOT_W / 2}, ${PLOT_H + 40})`).attr("text-anchor", "middle").attr("font-size", "0.85rem").attr("font-weight", "bold").attr("fill", AXIS_COLOR).text(a.texts.xAxisLabel);
|
|
290
|
-
plot.append("text").attr("transform", `translate(${-MARGIN.left + 14}, ${PLOT_H / 2}) rotate(-90)`).attr("text-anchor", "middle").attr("font-size", "0.82rem").attr("font-weight", "bold").attr("fill", AXIS_COLOR).text(a.texts.leftAxisLabel);
|
|
291
|
-
plot.append("text").attr("transform", `translate(${PLOT_W + MARGIN.right - 14}, ${PLOT_H / 2}) rotate(90)`).attr("text-anchor", "middle").attr("font-size", "0.82rem").attr("font-weight", "bold").attr("fill", AXIS_COLOR).text(a.texts.rightAxisLabel);
|
|
292
|
-
}
|
|
293
|
-
|
|
294
|
-
// plots/profile/renderImpressionLegend.ts
|
|
295
|
-
var SWATCH_SIZE = 14;
|
|
296
|
-
var LINE_W = 22;
|
|
297
|
-
var DOT_R = 4;
|
|
298
|
-
var LABEL_GAP = 6;
|
|
299
|
-
var ITEM_GAP = 20;
|
|
300
|
-
var ROW_H = 22;
|
|
301
|
-
var PAD_X = 2;
|
|
302
|
-
var FONT_SIZE = "0.8rem";
|
|
303
|
-
var ZONE_OPACITY = 0.3;
|
|
304
|
-
var textWidth = (sel) => sel.node().getBBox().width;
|
|
305
|
-
function renderImpressionLegend(a) {
|
|
306
|
-
const holder = a.holder.style("display", "flex").style("justify-content", "center").style("padding-top", "8px");
|
|
307
|
-
const svg = holder.append("svg").attr("data-testid", "sjpp-profileForms-impression-legend");
|
|
308
|
-
const g = svg.append("g");
|
|
309
|
-
const seriesG = g.append("g");
|
|
310
|
-
const seriesCy = ROW_H / 2;
|
|
311
|
-
let sx = 0;
|
|
312
|
-
for (const s of a.series) {
|
|
313
|
-
const item = seriesG.append("g").attr("class", "impression-legend-item");
|
|
314
|
-
const swatchW = s.symbol === "line" ? LINE_W : SWATCH_SIZE;
|
|
315
|
-
if (s.symbol === "line") {
|
|
316
|
-
item.append("line").attr("x1", sx).attr("y1", seriesCy).attr("x2", sx + LINE_W).attr("y2", seriesCy).attr("stroke", s.color).attr("stroke-width", 2);
|
|
317
|
-
item.append("circle").attr("cx", sx + LINE_W / 2).attr("cy", seriesCy).attr("r", DOT_R).attr("fill", s.color);
|
|
318
|
-
} else if (s.symbol === "circle") {
|
|
319
|
-
item.append("circle").attr("cx", sx + SWATCH_SIZE / 2).attr("cy", seriesCy).attr("r", SWATCH_SIZE / 2).attr("fill", s.color).attr("stroke", "#666").attr("stroke-width", 0.5);
|
|
320
|
-
} else {
|
|
321
|
-
item.append("rect").attr("x", sx).attr("y", seriesCy - SWATCH_SIZE / 2).attr("width", SWATCH_SIZE).attr("height", SWATCH_SIZE).attr("fill", s.color).attr("stroke", "#666").attr("stroke-width", 0.5);
|
|
322
|
-
}
|
|
323
|
-
const label = item.append("text").attr("x", sx + swatchW + LABEL_GAP).attr("y", seriesCy).attr("dominant-baseline", "central").attr("font-size", FONT_SIZE).text(s.label);
|
|
324
|
-
sx += swatchW + LABEL_GAP + textWidth(label) + ITEM_GAP;
|
|
325
|
-
}
|
|
326
|
-
const seriesW = Math.max(0, sx - ITEM_GAP);
|
|
327
|
-
const zonesG = g.append("g");
|
|
328
|
-
const zonesCy = ROW_H + ROW_H / 2;
|
|
329
|
-
let zx = 0;
|
|
330
|
-
for (const z of [...a.zones].sort((z1, z2) => z1.min - z2.min)) {
|
|
331
|
-
const item = zonesG.append("g").attr("class", "impression-legend-zone");
|
|
332
|
-
item.append("rect").attr("x", zx).attr("y", zonesCy - SWATCH_SIZE / 2).attr("width", SWATCH_SIZE).attr("height", SWATCH_SIZE).attr("fill", z.color).attr("opacity", ZONE_OPACITY).attr("stroke", "#ccc").attr("stroke-width", 0.5);
|
|
333
|
-
const label = item.append("text").attr("x", zx + SWATCH_SIZE + LABEL_GAP).attr("y", zonesCy).attr("dominant-baseline", "central").attr("font-size", FONT_SIZE).text(z.label);
|
|
334
|
-
zx += SWATCH_SIZE + LABEL_GAP + textWidth(label) + ITEM_GAP;
|
|
335
|
-
}
|
|
336
|
-
const zonesW = Math.max(0, zx - ITEM_GAP);
|
|
337
|
-
const totalW = Math.max(seriesW, zonesW);
|
|
338
|
-
seriesG.attr("transform", `translate(${PAD_X + (totalW - seriesW) / 2}, 0)`);
|
|
339
|
-
zonesG.attr("transform", `translate(${PAD_X + (totalW - zonesW) / 2}, 0)`);
|
|
340
|
-
svg.attr("width", Math.ceil(totalW) + 2 * PAD_X).attr("height", 2 * ROW_H);
|
|
341
|
-
}
|
|
342
|
-
|
|
343
|
-
// plots/profile/profileForms.ts
|
|
344
|
-
var YES_NO_TAB = "Yes/No Barchart";
|
|
345
|
-
var LIKERT_TAB = "Likert Scale";
|
|
346
|
-
var IMPRESSION_SUFFIX = "__Impression";
|
|
347
|
-
var profileForms = class extends profilePlot {
|
|
348
|
-
constructor(opts) {
|
|
349
|
-
super(opts, "profileForms");
|
|
350
|
-
// Responder-level multivalue impression term ids under this __Impression domain
|
|
351
|
-
// (POCFimpression_mod*). When present, the route builds the POC distribution per
|
|
352
|
-
// responder from these instead of the per-site pocTW float.
|
|
353
|
-
this.pocResponderTermIds = [];
|
|
354
|
-
this.opts = opts;
|
|
355
|
-
this.id2SCTW = {};
|
|
356
|
-
}
|
|
357
|
-
static {
|
|
358
|
-
this.type = "profileForms";
|
|
359
|
-
}
|
|
360
|
-
async init(appState) {
|
|
361
|
-
super.init(appState);
|
|
362
|
-
const config = structuredClone(appState.plots.find((p) => p.id === this.id));
|
|
363
|
-
const parentId = config.tw?.term?.id || "";
|
|
364
|
-
this.isImpressionDomain = parentId.endsWith(IMPRESSION_SUFFIX);
|
|
365
|
-
const settings = config.settings.profileForms;
|
|
366
|
-
this.tabs = [];
|
|
367
|
-
this.twLst = [];
|
|
368
|
-
if (this.isImpressionDomain) {
|
|
369
|
-
const cohortValuelst = appState.termdbConfig?.selectCohort ? appState.termdbConfig.selectCohort.values[appState.activeCohort]?.keys : null;
|
|
370
|
-
const childData = await this.vocabApi.getTermChildren({ id: parentId }, cohortValuelst);
|
|
371
|
-
const children = childData?.lst || [];
|
|
372
|
-
const scChild = children.find((t) => t.type === "integer") || children[0];
|
|
373
|
-
const pocChild = children.find((t) => t.type === "float");
|
|
374
|
-
this.pocResponderTermIds = children.filter((t) => t.type === "multivalue").map((t) => t.id);
|
|
375
|
-
if (!scChild) {
|
|
376
|
-
console.error("profileForms impression-domain SC child not found:", { parentId, cohortValuelst, childData });
|
|
377
|
-
}
|
|
378
|
-
if (scChild) {
|
|
379
|
-
this.scTW = { id: scChild.id, q: { mode: "continuous" } };
|
|
380
|
-
await fillTermWrapper(this.scTW, this.app.vocabApi);
|
|
381
|
-
this.impressionScColor = this.scTW.term.color;
|
|
382
|
-
}
|
|
383
|
-
if (pocChild) {
|
|
384
|
-
this.pocTW = { id: pocChild.id, q: { mode: "continuous" } };
|
|
385
|
-
await fillTermWrapper(this.pocTW, this.app.vocabApi);
|
|
386
|
-
this.impressionPocColor = this.pocTW.term.color;
|
|
387
|
-
}
|
|
388
|
-
} else {
|
|
389
|
-
this.twLst = await this.vocabApi.getMultivalueTWs({ parent_id: parentId });
|
|
390
|
-
for (const plot of config.options) {
|
|
391
|
-
const tws = this.twLst.filter((tw) => tw.term.subtype == plot.subtype);
|
|
392
|
-
if (!tws.length) continue;
|
|
393
|
-
const tab = {
|
|
394
|
-
label: plot.name,
|
|
395
|
-
callback: () => {
|
|
396
|
-
this.app.dispatch({ type: "plot_edit", id: this.id, config: { activeTab: plot.name } });
|
|
397
|
-
},
|
|
398
|
-
active: false
|
|
399
|
-
};
|
|
400
|
-
if (plot.name == config.activeTab) tab.active = true;
|
|
401
|
-
if (plot.hasSC) {
|
|
402
|
-
this.id2SCTW[plot.name] = {};
|
|
403
|
-
for (const tw of this.twLst) {
|
|
404
|
-
if (tw.term.subtype != plot.subtype) continue;
|
|
405
|
-
const scTermId = tw.term.id.replace(/^POC/, "");
|
|
406
|
-
const scTW = { id: scTermId };
|
|
407
|
-
await fillTermWrapper(scTW, this.app.vocabApi);
|
|
408
|
-
this.id2SCTW[plot.name][scTermId] = scTW;
|
|
409
|
-
}
|
|
410
|
-
this.twLst.push(...Object.values(this.id2SCTW[plot.name]));
|
|
411
|
-
}
|
|
412
|
-
this.tabs.push(tab);
|
|
413
|
-
}
|
|
414
|
-
}
|
|
415
|
-
const rightDiv = this.dom.rightDiv;
|
|
416
|
-
const topDiv = rightDiv.append("div");
|
|
417
|
-
const domainDiv = topDiv.append("div").style("padding-bottom", "10px").style("font-weight", "bold");
|
|
418
|
-
const headerDiv = rightDiv.append("div").style("padding-bottom", "10px");
|
|
419
|
-
if (!this.isImpressionDomain && this.tabs.length > 1)
|
|
420
|
-
await new Tabs({
|
|
421
|
-
holder: topDiv,
|
|
422
|
-
tabsPosition: "horizontal",
|
|
423
|
-
tabs: this.tabs
|
|
424
|
-
}).main();
|
|
425
|
-
const shift = 690;
|
|
426
|
-
const shiftTop = 50;
|
|
427
|
-
const width = settings.svgw + shift + 500;
|
|
428
|
-
const svg = rightDiv.style("padding", "20px").append("svg").attr("width", width);
|
|
429
|
-
svg.append("defs").append("pattern").attr("id", `${this.id}_diagonalHatch`).attr("patternUnits", "userSpaceOnUse").attr("width", 4).attr("height", 4).append("path").attr("d", "M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2").attr("stroke-width", 1).attr("stroke", "gray");
|
|
430
|
-
this.shiftTop = shiftTop;
|
|
431
|
-
this.shift = shift;
|
|
432
|
-
const mainG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
|
|
433
|
-
const gridG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
|
|
434
|
-
this.filterG = svg.append("g").attr("transform", `translate(${shift + settings.svgw + 60}, ${shiftTop + 40})`);
|
|
435
|
-
this.legendG = svg.append("g");
|
|
436
|
-
const xAxisG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop / 2})`);
|
|
437
|
-
const impressionDiv = rightDiv.append("div");
|
|
438
|
-
if (this.isImpressionDomain) svg.style("display", "none");
|
|
439
|
-
this.dom = copyMerge(this.dom, {
|
|
440
|
-
svg,
|
|
441
|
-
headerDiv,
|
|
442
|
-
mainG,
|
|
443
|
-
gridG,
|
|
444
|
-
legendG: this.legendG,
|
|
445
|
-
xAxisG,
|
|
446
|
-
domainDiv,
|
|
447
|
-
impressionDiv
|
|
448
|
-
});
|
|
449
|
-
}
|
|
450
|
-
async main() {
|
|
451
|
-
this.dom.loadingDiv.style("display", "");
|
|
452
|
-
try {
|
|
453
|
-
await super.main();
|
|
454
|
-
const parents = this.config.tw.term.id.split("__");
|
|
455
|
-
this.module = parents[1];
|
|
456
|
-
const domain = parents.slice(1).join(" / ");
|
|
457
|
-
this.dom.domainDiv.style("display", this.isImpressionDomain ? "none" : "").text(domain);
|
|
458
|
-
this.dom.mainG.selectAll("*").remove();
|
|
459
|
-
this.dom.gridG.selectAll("*").remove();
|
|
460
|
-
this.dom.xAxisG.selectAll("*").remove();
|
|
461
|
-
this.dom.legendG.selectAll("*").remove();
|
|
462
|
-
if (this.isImpressionDomain) {
|
|
463
|
-
await this.setControls();
|
|
464
|
-
this.data = await this.fetchImpressionDistribution();
|
|
465
|
-
if (this.data && "error" in this.data) throw this.data.error;
|
|
466
|
-
this.renderImpression();
|
|
467
|
-
return;
|
|
468
|
-
}
|
|
469
|
-
if (this.tabs.length == 0) return;
|
|
470
|
-
const activeTab = this.state.config.activeTab || this.tabs[0].label;
|
|
471
|
-
this.activePlot = this.state.config.options.find((p) => p.name == activeTab);
|
|
472
|
-
this.scoreTerms = this.twLst.filter((tw) => tw.term.subtype == this.activePlot.subtype);
|
|
473
|
-
if (this.activePlot.hasSC) {
|
|
474
|
-
this.scScoreTerms = Object.values(this.id2SCTW[this.activePlot.name]);
|
|
475
|
-
}
|
|
476
|
-
this.categories = /* @__PURE__ */ new Set();
|
|
477
|
-
await this.setControls();
|
|
478
|
-
this.renderPlot();
|
|
479
|
-
this.filterG.selectAll("*").remove();
|
|
480
|
-
this.addFilterLegend();
|
|
481
|
-
} finally {
|
|
482
|
-
this.dom.loadingDiv.style("display", "none");
|
|
483
|
-
}
|
|
484
|
-
}
|
|
485
|
-
async setControls(additionalInputs = []) {
|
|
486
|
-
if (!this.isImpressionDomain) return super.setControls(additionalInputs);
|
|
487
|
-
const savedType = this.type;
|
|
488
|
-
this.type = "__impressionDomain";
|
|
489
|
-
try {
|
|
490
|
-
await super.setControls(additionalInputs);
|
|
491
|
-
} finally {
|
|
492
|
-
;
|
|
493
|
-
this.type = savedType;
|
|
494
|
-
}
|
|
495
|
-
}
|
|
496
|
-
renderPlot() {
|
|
497
|
-
try {
|
|
498
|
-
this.dom.headerDiv.style("display", "none");
|
|
499
|
-
switch (this.activePlot.name) {
|
|
500
|
-
case LIKERT_TAB:
|
|
501
|
-
this.renderLikert();
|
|
502
|
-
break;
|
|
503
|
-
case YES_NO_TAB:
|
|
504
|
-
this.renderYesNo();
|
|
505
|
-
}
|
|
506
|
-
} catch (e) {
|
|
507
|
-
console.error("Error rendering profile forms plot:", e);
|
|
508
|
-
throw e;
|
|
509
|
-
}
|
|
510
|
-
}
|
|
511
|
-
async fetchImpressionDistribution() {
|
|
512
|
-
if (!this.scTW) return { error: "missing SC term for impression domain" };
|
|
513
|
-
const body = {
|
|
514
|
-
genome: this.state.vocab.genome,
|
|
515
|
-
dslabel: this.state.vocab.dslabel,
|
|
516
|
-
scTermId: this.scTW.term.id,
|
|
517
|
-
maxScore: IMPRESSION_MAX_SCORE,
|
|
518
|
-
filter: this.filter,
|
|
519
|
-
filterByUserSites: this.settings?.filterByUserSites
|
|
520
|
-
};
|
|
521
|
-
if (this.pocTW) body.pocTermId = this.pocTW.term.id;
|
|
522
|
-
if (this.pocResponderTermIds.length) body.pocResponderTermIds = this.pocResponderTermIds;
|
|
523
|
-
return dofetch3("termdb/profileImpressionDistribution", { body });
|
|
524
|
-
}
|
|
525
|
-
/*
|
|
526
|
-
Impression-domain view: for each POC responder group render a thermometer (shared SC median +
|
|
527
|
-
that group's POC median, with performance zones) beside a response-distribution combo chart
|
|
528
|
-
(SC line on the left axis, grey POC columns on the right axis). Groups stack vertically. A
|
|
529
|
-
module with no POC responders (e.g. Patients & Outcomes) renders a single SC-only thermometer.
|
|
530
|
-
*/
|
|
531
|
-
renderImpression() {
|
|
532
|
-
const holder = this.dom.impressionDiv;
|
|
533
|
-
holder.selectAll("*").remove();
|
|
534
|
-
const texts = this.config.impression;
|
|
535
|
-
if (!texts) throw `Missing impression config for the plot ${this.type} in this dataset`;
|
|
536
|
-
if (!texts.legend?.sc) throw `Missing impression.legend.sc for the plot ${this.type} in this dataset`;
|
|
537
|
-
const scColor = this.impressionScColor || "#888";
|
|
538
|
-
const data = this.data;
|
|
539
|
-
const moduleShades = this.state.termdbConfig?.colorMap?.[this.module] || {};
|
|
540
|
-
const zones = texts.zones.map((z) => ({
|
|
541
|
-
label: z.label,
|
|
542
|
-
min: z.min,
|
|
543
|
-
max: z.max,
|
|
544
|
-
color: moduleShades[z.shade] || scColor
|
|
545
|
-
}));
|
|
546
|
-
const attachTip = (sel, text, hover) => {
|
|
547
|
-
sel.datum({ tip: text, ...hover || {} }).style("cursor", "pointer");
|
|
548
|
-
};
|
|
549
|
-
const responders = Array.isArray(data.responders) ? data.responders : [];
|
|
550
|
-
const groups = responders.length ? responders.map((r) => ({
|
|
551
|
-
groupLabel: r.label,
|
|
552
|
-
poc: { median: r.median, total: r.total },
|
|
553
|
-
pocDistribution: r.distribution
|
|
554
|
-
})) : [{ groupLabel: null, poc: null, pocDistribution: [] }];
|
|
555
|
-
groups.forEach((g, i) => {
|
|
556
|
-
const groupLabel = g.groupLabel || texts.legend.sc;
|
|
557
|
-
const block = holder.append("div").attr("class", "sjpp-impression-card").attr("data-testid", "sjpp-profileForms-impression-card").attr("data-group-label", groupLabel).style("width", "fit-content").style("max-width", "100%").style("margin", "18px auto");
|
|
558
|
-
const header = block.append("div").style("text-align", "center");
|
|
559
|
-
header.append("div").attr("data-testid", "sjpp-profileForms-impression-title").style("font-size", "1.25rem").style("font-weight", "bold").style("padding", "4px 0").text(texts.titleTemplate.replace("{module}", this.module));
|
|
560
|
-
if (g.poc)
|
|
561
|
-
header.append("div").attr("data-testid", "sjpp-profileForms-impression-comparison").style("font-size", "1.05rem").style("font-weight", "bold").text(texts.comparisonTitle.replace("{group}", g.groupLabel));
|
|
562
|
-
const filterSvg = header.append("div").style("padding", "2px 0").append("svg");
|
|
563
|
-
this.filtersCount = 0;
|
|
564
|
-
this.filterG = filterSvg.append("g");
|
|
565
|
-
this.addFilterLegend();
|
|
566
|
-
const ffb = filterSvg.node().getBBox();
|
|
567
|
-
const fpad = 3;
|
|
568
|
-
this.filterG.attr("transform", `translate(${-ffb.x + fpad}, ${-ffb.y + fpad})`);
|
|
569
|
-
filterSvg.attr("width", Math.ceil(ffb.width + 2 * fpad)).attr("height", Math.ceil(ffb.height + 2 * fpad));
|
|
570
|
-
const box = block.append("div").style("border", "1px solid #bbb").style("border-radius", "8px").style("background", "#fff").style("margin-top", "6px");
|
|
571
|
-
const body = box.append("div").style("display", "flex").style("flex-wrap", "wrap").style("align-items", "stretch").style("justify-content", "center");
|
|
572
|
-
const chartPanel = (title, divider, testid) => {
|
|
573
|
-
const panel = body.append("div").attr("data-testid", testid).style("padding", "12px 18px").style("display", "flex").style("flex-direction", "column").style("align-items", "center");
|
|
574
|
-
if (divider) panel.style("border-right", "1px solid #ddd");
|
|
575
|
-
panel.append("div").style("text-align", "center").style("font-weight", "bold").style("font-size", "1rem").style("padding-bottom", "4px").text(title);
|
|
576
|
-
const chartWrap = panel.append("div").style("flex", "1 1 auto").style("display", "flex").style("align-items", "center");
|
|
577
|
-
return { panel, chartHolder: chartWrap.append("div") };
|
|
578
|
-
};
|
|
579
|
-
const thermo = chartPanel(texts.chartTitles.thermometer, !!g.poc, "sjpp-profileForms-thermometer-panel");
|
|
580
|
-
renderImpressionThermometer({
|
|
581
|
-
holder: thermo.chartHolder,
|
|
582
|
-
id: `${this.id}-g${i}`,
|
|
583
|
-
groupLabel,
|
|
584
|
-
sc: { median: data.scMedian, total: data.scTotal },
|
|
585
|
-
poc: g.poc,
|
|
586
|
-
ratingAxisLabel: texts.ratingAxisLabel,
|
|
587
|
-
zones,
|
|
588
|
-
colors: { sc: scColor },
|
|
589
|
-
attachTip
|
|
590
|
-
});
|
|
591
|
-
renderImpressionLegend({
|
|
592
|
-
holder: thermo.panel.append("div"),
|
|
593
|
-
series: [
|
|
594
|
-
{ color: scColor, label: texts.legend.sc, symbol: "circle" },
|
|
595
|
-
...g.poc ? [{ color: POC_FILL, label: texts.legend.poc, symbol: "circle" }] : []
|
|
596
|
-
],
|
|
597
|
-
zones
|
|
598
|
-
});
|
|
599
|
-
if (g.poc) {
|
|
600
|
-
const dist = chartPanel(texts.chartTitles.distribution, false, "sjpp-profileForms-distribution-panel");
|
|
601
|
-
renderResponseDistribution({
|
|
602
|
-
holder: dist.chartHolder,
|
|
603
|
-
id: `${this.id}-dist-g${i}`,
|
|
604
|
-
groupLabel,
|
|
605
|
-
maxScore: IMPRESSION_MAX_SCORE,
|
|
606
|
-
scDistribution: data.scDistribution || [],
|
|
607
|
-
pocDistribution: g.pocDistribution,
|
|
608
|
-
texts: texts.distribution,
|
|
609
|
-
zones,
|
|
610
|
-
colors: { sc: scColor },
|
|
611
|
-
attachTip
|
|
612
|
-
});
|
|
613
|
-
renderImpressionLegend({
|
|
614
|
-
holder: dist.panel.append("div"),
|
|
615
|
-
series: [
|
|
616
|
-
{ color: scColor, label: texts.legend.sc, symbol: "line" },
|
|
617
|
-
{ color: POC_FILL, label: texts.legend.poc, symbol: "square" }
|
|
618
|
-
],
|
|
619
|
-
zones
|
|
620
|
-
});
|
|
621
|
-
}
|
|
622
|
-
});
|
|
623
|
-
}
|
|
624
|
-
/*
|
|
625
|
-
The impression view renders each card's charts as separate <svg> elements under impressionDiv and
|
|
626
|
-
hides the main this.dom.svg, so the base getChartImages() — which only collects this.dom.svg —
|
|
627
|
-
would hand the download menu one empty, hidden svg (nothing downloads). Collect the card svgs
|
|
628
|
-
instead, keyed by the group label so a multi-card module downloads sensibly. The Likert/YesNo
|
|
629
|
-
path still draws into this.dom.svg, so it keeps the base behavior.
|
|
630
|
-
*/
|
|
631
|
-
getChartImages() {
|
|
632
|
-
if (!this.isImpressionDomain) return super.getChartImages();
|
|
633
|
-
const note = "\xA9 2025 St. Jude Children\u2019s Research Hospital";
|
|
634
|
-
const charts = [];
|
|
635
|
-
this.dom.impressionDiv.selectAll(".sjpp-impression-card").each(function() {
|
|
636
|
-
const card = select_default(this);
|
|
637
|
-
const label = card.attr("data-group-label") || "";
|
|
638
|
-
card.selectAll("svg").each(function() {
|
|
639
|
-
charts.push({ name: `${label} ${note}`.trim(), svg: select_default(this) });
|
|
640
|
-
});
|
|
641
|
-
});
|
|
642
|
-
return charts;
|
|
643
|
-
}
|
|
644
|
-
renderLikert() {
|
|
645
|
-
this.dom.headerDiv.style("display", "block");
|
|
646
|
-
this.dom.headerDiv.selectAll("*").remove();
|
|
647
|
-
let y = 0;
|
|
648
|
-
const step = 30;
|
|
649
|
-
const height = (this.scoreTerms.length + 2) * step;
|
|
650
|
-
this.dom.svg.attr("height", height + 120);
|
|
651
|
-
this.categories = /* @__PURE__ */ new Set();
|
|
652
|
-
const labelPadding = 80;
|
|
653
|
-
const tempG = this.dom.svg.append("g").style("visibility", "hidden");
|
|
654
|
-
let maxLabelWidth = 0;
|
|
655
|
-
for (const tw of this.scoreTerms) {
|
|
656
|
-
if (tw.term.type != "multivalue") continue;
|
|
657
|
-
const text = getText(tw.term.details || tw.term.name);
|
|
658
|
-
const tempText = tempG.append("text").style("font-size", "0.85em").text(text);
|
|
659
|
-
const w = tempText.node().getBBox().width;
|
|
660
|
-
if (w > maxLabelWidth) maxLabelWidth = w;
|
|
661
|
-
}
|
|
662
|
-
tempG.remove();
|
|
663
|
-
const shift = maxLabelWidth + labelPadding;
|
|
664
|
-
this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
665
|
-
this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
666
|
-
this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
|
|
667
|
-
this.dom.svg.attr("width", shift + this.settings.svgw + 500);
|
|
668
|
-
this.shift = shift;
|
|
669
|
-
for (const tw of this.scoreTerms) {
|
|
670
|
-
if (tw.term.type != "multivalue") continue;
|
|
671
|
-
const dict = this.getPercentageDict(tw);
|
|
672
|
-
this.renderLikertBar(dict, y, 25, tw);
|
|
673
|
-
y += step;
|
|
674
|
-
}
|
|
675
|
-
y += step * 2;
|
|
676
|
-
const width = this.settings.svgw;
|
|
677
|
-
const posScale = linear().domain([0, 100]).range([shift, shift + width]);
|
|
678
|
-
const posAxisBottom = axisBottom(posScale).ticks(10).tickFormat((d) => d + "%");
|
|
679
|
-
const scaleG = this.dom.svg.append("g").attr("transform", `translate(0, ${y})`);
|
|
680
|
-
posAxisBottom(scaleG);
|
|
681
|
-
const likertLegendOrder = [
|
|
682
|
-
"I Don't Know",
|
|
683
|
-
"Do Not Know",
|
|
684
|
-
"No",
|
|
685
|
-
"Not Available",
|
|
686
|
-
"Not Applicable For My Role",
|
|
687
|
-
"Almost Never",
|
|
688
|
-
"Infrequently",
|
|
689
|
-
"Sometimes",
|
|
690
|
-
"Frequently",
|
|
691
|
-
"Almost Always"
|
|
692
|
-
];
|
|
693
|
-
const catUpperSet = new Set([...this.categories].map((c) => c.toUpperCase()));
|
|
694
|
-
const orderedCategories = likertLegendOrder.filter((c) => catUpperSet.has(c.toUpperCase()));
|
|
695
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
696
|
-
const legendG = this.dom.legendG.attr("transform", `translate(0, ${y + 50})`);
|
|
697
|
-
const rectSize = 14;
|
|
698
|
-
const rectTextGap = 5;
|
|
699
|
-
const itemGap = 12;
|
|
700
|
-
let x = 0;
|
|
701
|
-
for (const category of orderedCategories) {
|
|
702
|
-
const key = category.toUpperCase();
|
|
703
|
-
const color = colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][category];
|
|
704
|
-
const itemG = legendG.append("g").attr("transform", `translate(${x}, 0)`);
|
|
705
|
-
itemG.append("rect").attr("width", rectSize).attr("height", rectSize).attr("fill", color);
|
|
706
|
-
const label = itemG.append("text").attr("x", rectSize + rectTextGap).attr("y", rectSize / 2).attr("dominant-baseline", "central").style("font-size", "0.8em").text(category);
|
|
707
|
-
x += rectSize + rectTextGap + label.node().getBBox().width + itemGap;
|
|
708
|
-
}
|
|
709
|
-
}
|
|
710
|
-
renderYesNo() {
|
|
711
|
-
const step = 30;
|
|
712
|
-
const height = this.scoreTerms.length * step;
|
|
713
|
-
this.dom.svg.attr("height", height * 3 + 200);
|
|
714
|
-
const labelPadding = 50;
|
|
715
|
-
const tempG = this.dom.svg.append("g").style("visibility", "hidden");
|
|
716
|
-
let maxLabelWidth = 0;
|
|
717
|
-
for (const tw of this.scoreTerms) {
|
|
718
|
-
const text2 = getText(tw.term.name);
|
|
719
|
-
const tempText = tempG.append("text").style("font-size", "0.8em").text(text2);
|
|
720
|
-
const w = tempText.node().getBBox().width;
|
|
721
|
-
if (w > maxLabelWidth) maxLabelWidth = w;
|
|
722
|
-
}
|
|
723
|
-
tempG.remove();
|
|
724
|
-
const shift = maxLabelWidth + labelPadding;
|
|
725
|
-
this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
726
|
-
this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
727
|
-
this.dom.xAxisG.attr("transform", `translate(${shift}, ${this.shiftTop / 2})`);
|
|
728
|
-
this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
|
|
729
|
-
this.dom.svg.attr("width", shift + this.settings.svgw + 500);
|
|
730
|
-
this.shift = shift;
|
|
731
|
-
this.xAxisScale = linear().domain([0, 100]).range([0, this.settings.svgw]);
|
|
732
|
-
this.dom.xAxisG.call(axisTop(this.xAxisScale));
|
|
733
|
-
let y = 0;
|
|
734
|
-
let showSCBar = false;
|
|
735
|
-
for (const tw of this.scoreTerms) {
|
|
736
|
-
const percents = this.getPercentageDict(tw);
|
|
737
|
-
const scTermId = tw.term.id.replace(/^POC/, "");
|
|
738
|
-
const scTW = this.id2SCTW[this.activePlot.name][scTermId];
|
|
739
|
-
const scPercents = this.getPercentageDict(scTW);
|
|
740
|
-
const scPercentKeys = Object.keys(scPercents).filter((k) => scPercents[k] > 0).map((k) => scTW.term.values?.[k]?.label || k);
|
|
741
|
-
const scTotal = Object.values(scPercents).reduce((a, b) => a + b, 0);
|
|
742
|
-
showSCBar = scTotal > 1;
|
|
743
|
-
this.renderYesNoBar(percents, y, step, scTotal == 1 ? scPercentKeys : []);
|
|
744
|
-
if (showSCBar) {
|
|
745
|
-
y += step + 10;
|
|
746
|
-
this.renderYesNoBar(scPercents, y, step, []);
|
|
747
|
-
this.dom.mainG.append("text").text("SC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", y + step * 0.6);
|
|
748
|
-
}
|
|
749
|
-
this.dom.mainG.append("text").text("POC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", showSCBar ? y - step + 0.35 * step : y + step * 0.6);
|
|
750
|
-
this.dom.mainG.append("text").attr("x", -this.shift).attr("y", showSCBar ? y : y + step / 2).text(getText(tw.term.name)).attr("font-size", "0.8em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
|
|
751
|
-
y += step + 40;
|
|
752
|
-
}
|
|
753
|
-
this.renderLines(y - 20);
|
|
754
|
-
if (showSCBar) this.dom.legendG.attr("transform", `translate(${550}, ${30 + this.settings.svgh})`);
|
|
755
|
-
else this.dom.legendG.attr("transform", `translate(${550}, ${this.settings.svgh * 0.8})`);
|
|
756
|
-
let x = 0;
|
|
757
|
-
for (const category of this.activePlot.categories) {
|
|
758
|
-
x += this.drawLegendRect(x, 0, category.name, this.dom.legendG, true);
|
|
759
|
-
}
|
|
760
|
-
let text = this.dom.legendG.append("text").attr("x", x + 80).attr("y", 18);
|
|
761
|
-
text.append("tspan").style("font-weight", "bold").text("SC:");
|
|
762
|
-
text.append("tspan").text("Site Coordinator");
|
|
763
|
-
text = this.dom.legendG.append("text").attr("x", x + 250).attr("y", 18);
|
|
764
|
-
text.append("tspan").style("font-weight", "bold").text("POC:");
|
|
765
|
-
text.append("tspan").text("Point of Care Staff");
|
|
766
|
-
}
|
|
767
|
-
onMouseOver(event) {
|
|
768
|
-
if (this.isImpressionDomain) {
|
|
769
|
-
const target = event.target;
|
|
770
|
-
const d = target.__data__;
|
|
771
|
-
if (d?.tip) {
|
|
772
|
-
const menu = this.tip.clear();
|
|
773
|
-
menu.d.text(d.tip);
|
|
774
|
-
menu.show(event.clientX, event.clientY, true, true);
|
|
775
|
-
if (d.on) for (const k in d.on) target.setAttribute(k, d.on[k]);
|
|
776
|
-
if (d.growR && !d._grown) {
|
|
777
|
-
d._grown = true;
|
|
778
|
-
select_default(target).interrupt().transition().duration(150).attr("r", d.growR);
|
|
779
|
-
}
|
|
780
|
-
} else this.onMouseOut(event);
|
|
781
|
-
return;
|
|
782
|
-
}
|
|
783
|
-
if (event.target.tagName == "rect") {
|
|
784
|
-
const path = event.target;
|
|
785
|
-
const d = path.__data__;
|
|
786
|
-
if (!d?.value) return this.onMouseOut(event);
|
|
787
|
-
const menu = this.tip.clear();
|
|
788
|
-
const percent = roundValueAuto(d.value, true, 1);
|
|
789
|
-
const row = menu.d.append("div").style("display", "flex").style("align-items", "center").style("gap", "5px");
|
|
790
|
-
if (d.color)
|
|
791
|
-
row.append("div").style("width", "12px").style("height", "12px").style("background-color", d.color).style("flex-shrink", "0");
|
|
792
|
-
row.append("span").text(`${d.key}: ${percent}%`);
|
|
793
|
-
menu.show(event.clientX, event.clientY, true, true);
|
|
794
|
-
} else this.onMouseOut(event);
|
|
795
|
-
}
|
|
796
|
-
onMouseOut(event) {
|
|
797
|
-
if (this.isImpressionDomain) {
|
|
798
|
-
const target = event?.target;
|
|
799
|
-
const d = target?.__data__;
|
|
800
|
-
if (d?.off) for (const k in d.off) target.setAttribute(k, d.off[k]);
|
|
801
|
-
if (d?._grown) {
|
|
802
|
-
d._grown = false;
|
|
803
|
-
select_default(target).interrupt().transition().duration(150).attr("r", d.baseR);
|
|
804
|
-
}
|
|
805
|
-
}
|
|
806
|
-
this.tip.hide();
|
|
807
|
-
}
|
|
808
|
-
getColor(key) {
|
|
809
|
-
return key == "Yes" ? this.activePlot.color : key == "No" ? "#aaa" : `url(#${this.id}_diagonalHatch)`;
|
|
810
|
-
}
|
|
811
|
-
renderLikertBar(dict, y, height, tw) {
|
|
812
|
-
const itemG = this.dom.mainG.append("g");
|
|
813
|
-
let total = 0;
|
|
814
|
-
for (const key in dict) total += dict[key];
|
|
815
|
-
const key2num = {};
|
|
816
|
-
for (const key in tw.term.values) {
|
|
817
|
-
const category = tw.term.values[key].label.toUpperCase();
|
|
818
|
-
key2num[category] = Number(key);
|
|
819
|
-
}
|
|
820
|
-
let x = 0;
|
|
821
|
-
const keys = Object.keys(dict).sort((a, b) => key2num[a.toUpperCase()] - key2num[b.toUpperCase()]);
|
|
822
|
-
for (const key of keys) {
|
|
823
|
-
this.categories.add(key);
|
|
824
|
-
const width = this.renderCategory(key, dict, itemG, x, height, total);
|
|
825
|
-
x += width;
|
|
826
|
-
}
|
|
827
|
-
const text = getText(tw.term.details || tw.term.name);
|
|
828
|
-
const textG = this.dom.svg.append("g").attr("transform", `translate(0, ${y + this.shiftTop})`);
|
|
829
|
-
textG.append("text").text(text).attr("y", height * 2 / 3).style("font-size", "0.85em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
|
|
830
|
-
itemG.attr("transform", `translate(0, ${y})`);
|
|
831
|
-
}
|
|
832
|
-
renderCategory(category, dict, itemG, x, height, total, showPercent = false) {
|
|
833
|
-
const key = category.toUpperCase();
|
|
834
|
-
const module = this.module;
|
|
835
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
836
|
-
const color = colorMap[module][key] || colorMap["*"][key];
|
|
837
|
-
const entry = Object.entries(dict).find((k) => k[0].toUpperCase() == key);
|
|
838
|
-
if (!entry) return 0;
|
|
839
|
-
const value = entry[1];
|
|
840
|
-
this.categories.add(category);
|
|
841
|
-
const percent = value / total * 100;
|
|
842
|
-
const width = percent / 100 * this.settings.svgw;
|
|
843
|
-
itemG.append("rect").attr("x", x).attr("width", width).attr("height", height).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("fill", color).datum({ key: category, value: percent, color }).on("mouseover", (event) => this.onMouseOver(event));
|
|
844
|
-
if (showPercent)
|
|
845
|
-
itemG.append("text").text(`${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.8em").attr("x", x + width + 10).attr("y", height * 0.6);
|
|
846
|
-
return width;
|
|
847
|
-
}
|
|
848
|
-
renderYesNoBar(percents, y, height, scPercentKeys) {
|
|
849
|
-
const percentsOrdered = Object.keys(percents).sort((a, b) => -a.localeCompare(b));
|
|
850
|
-
const total = Object.values(percents).reduce((a, b) => a + b, 0);
|
|
851
|
-
let x = 0;
|
|
852
|
-
for (const key of percentsOrdered) {
|
|
853
|
-
const color = this.getColor(key);
|
|
854
|
-
const value = percents[key];
|
|
855
|
-
const width = value / total * this.settings.svgw;
|
|
856
|
-
const percent = value / total * 100;
|
|
857
|
-
this.dom.mainG.append("rect").attr("x", x).attr("y", y).attr("width", width).attr("height", height).attr("stroke", "gray").attr("fill", color).datum({ key, value: percent, color });
|
|
858
|
-
if (scPercentKeys.includes(key)) {
|
|
859
|
-
const arrowX = x + width / 2;
|
|
860
|
-
const arrowSize = 6;
|
|
861
|
-
this.dom.mainG.append("polygon").attr(
|
|
862
|
-
"points",
|
|
863
|
-
`${arrowX},${y} ${arrowX - arrowSize},${y - arrowSize * 1.5} ${arrowX + arrowSize},${y - arrowSize * 1.5}`
|
|
864
|
-
).attr("fill", "#c0392b").attr("pointer-events", "none");
|
|
865
|
-
this.dom.mainG.append("text").text(`SC ${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.7em").style("fill", "#c0392b").attr("font-weight", "bold").attr("text-anchor", "middle").attr("x", arrowX).attr("y", y - arrowSize * 1.5 - 3).attr("pointer-events", "none");
|
|
866
|
-
}
|
|
867
|
-
x += width;
|
|
868
|
-
}
|
|
869
|
-
}
|
|
870
|
-
renderLines(y) {
|
|
871
|
-
const width = this.settings.svgw;
|
|
872
|
-
const color = "lightgray";
|
|
873
|
-
const opacity = 0.5;
|
|
874
|
-
const bins = 4;
|
|
875
|
-
const size = width / bins;
|
|
876
|
-
let x;
|
|
877
|
-
const gridG = this.dom.gridG;
|
|
878
|
-
for (let i = 0; i <= bins; i++) {
|
|
879
|
-
x = i * size;
|
|
880
|
-
gridG.append("line").attr("x1", x).attr("x2", x).attr("y1", 0).attr("y2", y).style("stroke", color).style("stroke-opacity", opacity).style("stroke-dasharray", "5, 5");
|
|
881
|
-
}
|
|
882
|
-
}
|
|
883
|
-
drawLegendRect(x, y, text, legendG, isYesNo = false) {
|
|
884
|
-
const key = text.toUpperCase();
|
|
885
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
886
|
-
const color = isYesNo ? this.getColor(text) : colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][text];
|
|
887
|
-
const size = 20;
|
|
888
|
-
const gap = 15;
|
|
889
|
-
const itemG = legendG.append("g").attr("transform", `translate(${x}, ${y})`);
|
|
890
|
-
itemG.append("rect").attr("x", 0).attr("y", 0).attr("width", size).attr("height", size).attr("fill", color).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("pointer-events", "none");
|
|
891
|
-
const label = itemG.append("text").attr("transform", `translate(${size + gap}, ${size / 2})`).attr("dominant-baseline", "central").style("font-size", "0.85em").text(text);
|
|
892
|
-
const labelWidth = label.node().getBBox().width;
|
|
893
|
-
return size + gap + labelWidth + gap;
|
|
894
|
-
}
|
|
895
|
-
showText(event, text, size = 110) {
|
|
896
|
-
if (text.length <= size) return;
|
|
897
|
-
const menu = this.tip.clear();
|
|
898
|
-
menu.d.style("padding", "5px").text(text);
|
|
899
|
-
menu.showunder(event.target);
|
|
900
|
-
}
|
|
901
|
-
getPercentageDict(tw) {
|
|
902
|
-
return this.data.term2Score[tw.term.id];
|
|
903
|
-
}
|
|
904
|
-
};
|
|
905
|
-
async function getPlotConfig(opts, app, _activeCohort) {
|
|
906
|
-
const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
|
|
907
|
-
const formsConfig = await getProfilePlotConfig(activeCohort, app, opts);
|
|
908
|
-
let config = formsConfig;
|
|
909
|
-
config.settings = getDefaultProfileFormsSettings();
|
|
910
|
-
config.headerTitle = "Templates: Visualization tools to provide insights and assist in leveraging data";
|
|
911
|
-
config = copyMerge(structuredClone(config), opts);
|
|
912
|
-
for (const plot of config.options) {
|
|
913
|
-
if (plot.terms) await fillTwLst(plot.terms, app.vocabApi);
|
|
914
|
-
}
|
|
915
|
-
return config;
|
|
916
|
-
}
|
|
917
|
-
function getDefaultProfileFormsSettings() {
|
|
918
|
-
const settings = {
|
|
919
|
-
controls: {
|
|
920
|
-
isOpen: false
|
|
921
|
-
},
|
|
922
|
-
profileForms: { svgw: 420, svgh: 480 }
|
|
923
|
-
};
|
|
924
|
-
const profilePlotSettings = getDefaultProfilePlotSettings();
|
|
925
|
-
settings.profileForms = copyMerge(settings.profileForms, profilePlotSettings);
|
|
926
|
-
return settings;
|
|
927
|
-
}
|
|
928
|
-
var profileFormsInit = getCompInit(profileForms);
|
|
929
|
-
var componentInit = profileFormsInit;
|
|
930
|
-
function getText(name, size = 110) {
|
|
931
|
-
if (name.length > size) name = name.slice(0, size) + "...";
|
|
932
|
-
return name;
|
|
933
|
-
}
|
|
934
|
-
export {
|
|
935
|
-
componentInit,
|
|
936
|
-
getDefaultProfileFormsSettings,
|
|
937
|
-
getPlotConfig,
|
|
938
|
-
profileForms,
|
|
939
|
-
profileFormsInit
|
|
940
|
-
};
|
|
941
|
-
//# sourceMappingURL=profileForms-2YX2OYDI.js.map
|