@sjcrh/proteinpaint-client 2.204.0 → 2.205.0

package/dist/block.tk.pgv-C2N7UFYT.js

@@ -1,938 +0,0 @@
-import {
-  bigwigconfigpanel,
-  bigwigfromtemplate
-} from "./chunk-YLWSTPPL.js";
-import {
-  legend_newrow
-} from "./chunk-4C2N2BQC.js";
-import "./chunk-V2OJLJSK.js";
-import "./chunk-X7IAKV5Z.js";
-import {
-  axisstyle,
-  bwSetting,
-  category2legend,
-  font,
-  make_table_2col,
-  tkt
-} from "./chunk-7RX5UEF3.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-L42F5J5C.js";
-import "./chunk-HKQDZKSF.js";
-import {
-  Menu
-} from "./chunk-ELJX3QIQ.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import {
-  dofetch3
-} from "./chunk-FUSTNOQZ.js";
-import "./chunk-VSPUFGDX.js";
-import "./chunk-WVPFLPWB.js";
-import "./chunk-S5SOLLGM.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-D6G64XPJ.js";
-import "./chunk-W5J3LTYS.js";
-import {
-  axisLeft,
-  axisTop,
-  category10_default
-} from "./chunk-YLJOZP4P.js";
-import {
-  format,
-  linear,
-  ordinal
-} from "./chunk-HDTFYTEL.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// src/block.tk.pgv.js
-var genevaluexspace = 13;
-var defaultbarcolor = "#668CFF";
-var defaultbarwidth = 150;
-var gvtkheaderyoff = -2;
-function makeTk(tk, block) {
-  const template = tk._template;
-  delete tk._template;
-  if (!template.tracks) throw ".tracks[] missing from " + tk.name + " track";
-  if (template.tracks.length == 0) throw ".tracks[] length 0 from " + tk.name + " track";
-  tk.tracks = [];
-  const nameset = /* @__PURE__ */ new Set();
-  for (const t0 of template.tracks) {
-    const t = {};
-    for (const k in t0) {
-      t[k] = t0[k];
-    }
-    if (!t.name) throw "no name for member track of " + tk.name + ": " + JSON.stringify(t);
-    if (nameset.has(t.name)) throw "duplicating member track name: " + t.name;
-    nameset.add(t.name);
-    if (!t.type) throw "no type for member track of " + tk.name + ": " + JSON.stringify(t);
-    if (!t.file && !t.url) throw 'neither file or url given for member "' + t.name + '" of ' + tk.name;
-    if (t.type == "bedj") {
-    } else if (t.type == "bigwig") {
-      bigwigfromtemplate(t, t0);
-    } else {
-      throw "invalid type of member track of " + tk.name + ": " + t.type;
-    }
-    t.toppad = t.toppad == void 0 ? 4 : t.toppad;
-    t.bottompad = t.bottompad == void 0 ? 4 : t.bottompad;
-    t.y = 0;
-    tk.tracks.push(t);
-  }
-  tk.geneset = /* @__PURE__ */ new Set();
-  if (template.genevaluetrack) {
-    if (!template.genevaluetrack.file && template.genevaluetrack.url) throw "no .file or .url for genevaluetrack";
-    tk.genevaluetrack = {
-      file: template.genevaluetrack.file,
-      url: template.genevaluetrack.url
-    };
-  }
-  if (template.genevaluetklst) {
-    if (!Array.isArray(template.genevaluetklst)) throw ".genevaluetklst should be an array";
-    if (template.genevaluetklst.length == 0) throw "zero length of .genevaluetklst";
-    tk.genevaluetklst = [];
-    for (const gvtk of template.genevaluetklst) {
-      if (!gvtk.name) throw "name missing for one genevalue track";
-      if (!gvtk.file && !gvtk.url) throw "no file or url for genevalue track " + gvtk.name;
-      const t = {};
-      for (const k in gvtk) t[k] = gvtk[k];
-      tk.genevaluetklst.push(t);
-    }
-  }
-  if (template.bigwigsetting) {
-    tk.bigwigsetting = {};
-    if (template.bigwigsetting.scale) {
-      if (template.bigwigsetting.scale.max) {
-        if (!Number.isFinite(template.bigwigsetting.scale.max)) throw "invalid max value in bigwigsetting.scale";
-        if (!Number.isFinite(template.bigwigsetting.scale.min))
-          throw "invalid or missing min value in bigwigsetting.scale";
-        if (template.bigwigsetting.scale.max <= template.bigwigsetting.scale.min)
-          throw "max <= min in bigwigsetting.scale";
-        tk.bigwigsetting.scale = { min: template.bigwigsetting.scale.min, max: template.bigwigsetting.scale.max };
-      }
-    }
-    for (const t of tk.tracks) {
-      if (t.type != "bigwig") continue;
-      if (tk.bigwigsetting.scale) {
-        if (tk.bigwigsetting.scale.max != void 0) {
-          delete t.scale.auto;
-          t.scale = {
-            min: tk.bigwigsetting.scale.min,
-            max: tk.bigwigsetting.scale.max
-          };
-        } else if (tk.bigwigsetting.scale.percentile) {
-          delete t.scale.auto;
-          t.scale.percentile = tk.bigwigsetting.scale.percentile;
-        }
-      }
-      if (tk.bigwigsetting.pcolor) t.pcolor = tk.bigwigsetting.pcolor;
-      if (tk.bigwigsetting.ncolor) t.ncolor = tk.bigwigsetting.ncolor;
-      if (tk.bigwigsetting.pcolor2) t.pcolor = tk.bigwigsetting.pcolor2;
-      if (tk.bigwigsetting.ncolor2) t.ncolor = tk.bigwigsetting.ncolor2;
-    }
-  }
-  if (tk.genevaluetrack) {
-    const gvtk = tk.genevaluetrack;
-    delete tk.genevaluetrack;
-    gvtk.name = tk.genevaluetype;
-    delete tk.genevaluetype;
-    if (tk.genevaluematchname) {
-      gvtk.matchname = tk.genevaluematchname;
-      delete tk.genevaluematchname;
-    }
-    if (tk.genebarcolor) {
-      gvtk.barcolor = tk.genebarcolor;
-      delete tk.genebarcolor;
-    }
-    if (tk.genebarwidth) {
-      gvtk.barwidth = tk.genebarwidth;
-      delete tk.genebarwidth;
-    }
-    if (!tk.genevaluetklst) {
-      tk.genevaluetklst = [];
-    }
-    tk.genevaluetklst.push(gvtk);
-  }
-  if (tk.genevaluetklst) {
-    for (const gvtk of tk.genevaluetklst) {
-      gvtk.axisg = tk.gright.append("g");
-      gvtk.label = tk.gright.append("text").attr("font-size", tk.axisfontsize + 2).attr("font-family", font).attr("class", "sja_clbtext").on("click", () => {
-        gvtklabelclick(gvtk, tk, block);
-      });
-      if (!gvtk.barcolor) gvtk.barcolor = defaultbarcolor;
-      if (!gvtk.barwidth) gvtk.barwidth = defaultbarwidth;
-    }
-    tk.toppad = tk.genevaluetklst.length == 1 ? 20 : 40;
-    if (tk.genevaluetklst.length == 1) {
-      tk.genevaluetklst[0].label.attr("text-anchor", "end").attr("x", -block.rpad).attr("y", gvtkheaderyoff);
-    } else {
-      for (const gvtk of tk.genevaluetklst) {
-        gvtk.label.attr("y", tk.axisfontsize + 2 - tk.toppad).attr("text-anchor", "middle");
-      }
-    }
-    tk.sample2gvtk2gene = /* @__PURE__ */ new Map();
-    tk.genelsttip = new Menu({ padding: "5px" });
-    setrightwidth(tk, block);
-    tk.config_handle = block.maketklefthandle(tk, -block.labelfontsize + gvtkheaderyoff).text("CONFIG").attr("fill", "#858585").attr("x", 5).attr("text-anchor", "begin");
-    tk.changegenelabel = tk.gright.append("text").attr("text-anchor", "end").attr("font-size", tk.axisfontsize).attr("font-family", font).attr("x", -block.rpad).attr("y", gvtkheaderyoff).attr("class", "sja_clbtext").on("click", () => {
-      listgenes(tk.changegenelabel, tk, block);
-    });
-    if (tk.genevaluematchname) {
-      for (const gvtk of tk.genevaluetklst) {
-        if (!gvtk.matchname) gvtk.matchname = tk.genevaluematchname;
-      }
-      delete tk.genevaluematchname;
-    }
-  } else {
-    tk.toppad = 20;
-    tk.config_handle = block.maketkconfighandle(tk).attr("y", -5);
-  }
-  tk.config_handle.on("click", () => {
-    configPanel(tk, block);
-  });
-  const collectleftlabw = [tk.tklabel.attr("y", -10).node().getBBox().width];
-  if (block.legend && block.legend.holder) {
-    let willshowlegend = false;
-    if (tk.legendimg && tk.legendimg.file) {
-      willshowlegend = true;
-    } else if (tk.categories) {
-      willshowlegend = true;
-    } else if (tk.genevaluetklst) {
-      willshowlegend = tk.genevaluetklst.find((i) => i.multivaluekey);
-    }
-    if (willshowlegend) {
-      const [tr, td] = legend_newrow(block, tk.name);
-      tk.tr_legend = tr;
-      tk.td_legend = td;
-      tk.legendtip = new Menu({ padding: "" });
-    }
-    if (tk.legendimg && tk.legendimg.file) {
-      block.make_legend_img(tk.legendimg, tk.td_legend);
-    } else if (tk.categories) {
-      category2legend(tk.categories, tk.td_legend);
-    }
-    if (tk.genevaluetklst) {
-      for (const gvtk of tk.genevaluetklst) {
-        if (gvtk.multivaluekey) {
-          gvtk.legend = {
-            div: tk.td_legend.append("div"),
-            gene2hiddenkeys: /* @__PURE__ */ new Map()
-            // gene-specific setting
-          };
-          gvtk.legend.label_genespecific = gvtk.legend.div.append("div").style("display", "inline-block").style("margin", "5px 10px 10px 0px").style("color", "#858585").style("vertical-align", "top");
-          gvtk.legend.contentdiv = gvtk.legend.div.append("div").style("display", "inline-block").style("margin", "0px 10px 10px 0px").style("vertical-align", "top").style("width", "800px");
-        }
-      }
-    }
-  }
-  for (const t of tk.tracks) {
-    t.g = tk.glider.append("g").attr("transform", "translate(0,0)");
-    t.errg = t.g.append("g");
-    t.immobileg = t.g.append("g").attr("transform", "translate(0,0)");
-    t.tktip = tk.tktip;
-    t.tklabel = t.immobileg.append("text").attr("font-size", tk.axisfontsize).attr("font-family", font).attr("text-anchor", "end").attr("dominant-baseline", "central").attr("x", block.tkleftlabel_xshift).attr("y", 0).text(t.name).on("mousedown", (event) => {
-      event.stopPropagation();
-      event.preventDefault();
-      movetrack(t, tk, event.clientY);
-    });
-    if (t.list_description) {
-      t.tklabel.on("mouseover", (event) => {
-        t.tktip.clear().show(event.clientX, event.clientY);
-        make_table_2col(t.tktip.d, t.list_description).style("margin", "");
-      }).on("mouseout", () => t.tktip.hide());
-    }
-    collectleftlabw.push(t.tklabel.node().getBBox().width);
-    if (tk.genevaluetklst) {
-      t.genevg = t.immobileg.append("g");
-      t.gvtkattr = /* @__PURE__ */ new Map();
-      for (const gvtk of tk.genevaluetklst) {
-        const obj = {};
-        obj.gvtk_g_xshift = t.genevg.append("g");
-        obj.hline = obj.gvtk_g_xshift.append("line").attr("stroke", "#ccc").attr("stroke-dasharray", "2,3").attr("shape-rendering", "crispEdges");
-        obj.gvtk_g = obj.gvtk_g_xshift.append("g");
-        if (gvtk.multivaluekey) {
-        } else {
-          obj.bar = obj.gvtk_g.append("rect").attr("width", 1);
-        }
-        t.gvtkattr.set(gvtk.name, obj);
-      }
-    }
-    if (t.type == tkt.bedj) {
-      t.img = t.g.append("image");
-    } else if (t.type == tkt.bigwig) {
-      t.img = t.g.append("image");
-      t.leftaxis = t.immobileg.append("g");
-    }
-  }
-  tk.leftLabelMaxwidth = Math.max(...collectleftlabw);
-  block.setllabel();
-}
-async function loadTk(tk, block) {
-  if (tk.uninitiated) {
-    makeTk(tk, block);
-    delete tk.uninitiated;
-  }
-  block.tkcloakon(tk);
-  const tasks = [];
-  for (const t of tk.tracks) {
-    t.height = 20;
-    t.errg.selectAll("*").remove();
-    if (t.type == tkt.bedj) {
-      const arg = block.tkarg_bedj(t);
-      if (tk.categories) {
-        arg.categories = tk.categories;
-      }
-      const task = dofetch3("tkbedj", { method: "POST", body: JSON.stringify(arg) }).then((data) => {
-        if (data.error) throw data.error;
-        t.height = t.toppad + data.height + t.bottompad;
-        t.img.attr("width", block.width).attr("height", data.height).attr("xlink:href", data.src);
-        if (block.pannedpx != void 0) {
-          t.img.attr("x", block.pannedpx * -1);
-        }
-        block.bedj_tooltip(t, data);
-      }).catch((e) => tkerror(t, e.message || e));
-      tasks.push(task);
-    } else if (t.type == tkt.bigwig) {
-      const arg = block.tkarg_q(t);
-      const task = dofetch3("tkbigwig", {
-        method: "POST",
-        body: JSON.stringify(arg)
-      }).then((data) => {
-        if (data.error) throw data.error;
-        t.height = t.toppad + t.barheight + t.bottompad;
-        t.img.attr("width", block.width).attr("height", t.barheight).attr("xlink:href", data.src);
-        if (block.pannedpx != void 0) {
-          t.img.attr("x", block.pannedpx * -1);
-        }
-        if (data.minv != void 0) {
-          t.scale.min = data.minv;
-        }
-        if (data.maxv != void 0) {
-          t.scale.max = data.maxv;
-        }
-        t.leftaxis.selectAll("*").remove();
-        if (data.nodata) {
-        } else {
-          const scale = linear().domain([t.scale.min, t.scale.max]).range([t.barheight, 0]);
-          axisstyle({
-            axis: t.leftaxis.call(axisLeft().scale(scale).tickValues([t.scale.min, t.scale.max])),
-            color: "black",
-            showline: true
-          });
-        }
-      }).catch((e) => tkerror(t, e.message || e));
-      tasks.push(task);
-    }
-  }
-  if (tk.genevaluetklst) {
-    tk.sample2gvtk2gene.clear();
-    tk.geneset.clear();
-    for (const gvtk of tk.genevaluetklst) {
-      const arg = block.tkarg_bedj(gvtk);
-      arg.getdata = 1;
-      const task = dofetch3("tkbedj", { method: "POST", body: JSON.stringify(arg) }).then((data) => {
-        if (data.error) throw data.error;
-        if (data.items && data.items.length > 0) {
-          for (const i of data.items) {
-            if (!i.gene || !i.sample) continue;
-            tk.geneset.add(i.gene);
-            if (!tk.sample2gvtk2gene.has(i.sample)) {
-              tk.sample2gvtk2gene.set(i.sample, /* @__PURE__ */ new Map());
-            }
-            if (!tk.sample2gvtk2gene.get(i.sample).has(gvtk.name)) {
-              tk.sample2gvtk2gene.get(i.sample).set(gvtk.name, /* @__PURE__ */ new Map());
-            }
-            if (gvtk.multivaluekey) {
-              if (!tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).has(i.gene)) {
-                tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).set(i.gene, []);
-              }
-              tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).get(i.gene).push({
-                name: i[gvtk.multivaluekey],
-                value: i.value
-              });
-            } else {
-              tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).set(i.gene, i.value);
-            }
-          }
-        }
-      });
-      tasks.push(task);
-    }
-  }
-  try {
-    await Promise.all(tasks);
-    render_tk(tk, block);
-    block.tkcloakoff(tk, {});
-  } catch (e) {
-    if (e.stack) console.log(e.stack);
-    block.tkcloakoff(tk, { error: e.message || e });
-  }
-  for (const t of tk.tracks) {
-    t.immobileg.attr("transform", "translate(0,0)");
-  }
-  block.block_setheight();
-}
-function render_tk(tk, block) {
-  tk.height_main = 0;
-  for (const t of tk.tracks) {
-    t.y = tk.height_main;
-    t.g.transition().attr("transform", "translate(0," + t.y + ")");
-    if (t.type == tkt.bedj) {
-      t.img.attr("x", 0);
-      t.tklabel.attr("y", (t.height - t.toppad - t.bottompad) / 2);
-    } else if (t.type == tkt.bigwig) {
-      t.img.attr("x", 0);
-      t.tklabel.attr("y", t.barheight / 2);
-    }
-    tk.height_main += t.height;
-  }
-  tk.height_main += tk.toppad + tk.bottompad;
-  if (tk.genevaluetklst) {
-    if (tk.geneset.size > 0) {
-      const showgene = [...tk.geneset][0];
-      showgeneplot(tk, block, showgene);
-    } else {
-      for (const gvtk of tk.genevaluetklst) {
-        gvtk.label.text("");
-      }
-      for (const t of tk.tracks) {
-        for (const v of t.gvtkattr.values()) {
-          v.hline.transition().attr("x2", 0);
-          if (v.bar) {
-            v.bar.transition().attr("width", 0);
-          } else {
-            v.gvtk_g.selectAll("*").remove();
-          }
-        }
-      }
-      for (const gvtk of tk.genevaluetklst) {
-        gvtk.axisg.selectAll("*").remove();
-      }
-    }
-  }
-}
-function showgeneplot(tk, block, gene) {
-  tk.__usegene = gene;
-  let xoff = 0;
-  for (const gvtk of tk.genevaluetklst) {
-    let minv = 0;
-    let maxv = 0;
-    const samplekey = gvtk.matchname || "name";
-    let colorvend;
-    if (gvtk.multivaluekey) {
-      gvtk.runtimekey2color_genespecific = /* @__PURE__ */ new Map();
-      colorvend = ordinal(category10_default);
-    }
-    for (const t of tk.tracks) {
-      t.gvtkattr.get(gvtk.name).value = void 0;
-      const samplename = t[samplekey];
-      if (!tk.sample2gvtk2gene.has(samplename)) {
-        continue;
-      }
-      if (!tk.sample2gvtk2gene.get(samplename).has(gvtk.name)) {
-        continue;
-      }
-      const genev = tk.sample2gvtk2gene.get(samplename).get(gvtk.name).get(gene);
-      if (genev == void 0) continue;
-      t.gvtkattr.get(gvtk.name).value = genev;
-      if (gvtk.multivaluekey) {
-        for (const v of genev) {
-          if (!v.name) {
-            continue;
-          }
-          if (!gvtk.runtimekey2color_genespecific.has(v.name)) {
-            gvtk.runtimekey2color_genespecific.set(v.name, colorvend(v.name));
-          }
-          maxv = Math.max(maxv, v.value);
-        }
-      } else {
-        maxv = Math.max(maxv, genev);
-      }
-    }
-    for (const t of tk.tracks) {
-      t.genevg.attr("transform", "translate(" + (block.width + block.rpad) + ",0)");
-      const obj = t.gvtkattr.get(gvtk.name);
-      const glyph_midy = (t.height - t.toppad - t.bottompad) / 2;
-      obj.gvtk_g_xshift.transition().attr("transform", "translate(" + xoff + ",0)");
-      obj.hline.transition().attr("y1", glyph_midy).attr("y2", glyph_midy).attr("x2", obj.value == void 0 ? 0 : gvtk.barwidth);
-      if (gvtk.multivaluekey) {
-        obj.gvtk_g.selectAll("*").remove();
-        if (obj.value) {
-          const radius = Math.min(8, glyph_midy);
-          let showlst = obj.value;
-          if (gvtk.legend.gene2hiddenkeys.has(tk.__usegene)) {
-            showlst = obj.value.filter((i) => !gvtk.legend.gene2hiddenkeys.get(tk.__usegene).has(i.name));
-          }
-          obj.dotg = obj.gvtk_g.selectAll().data(showlst).enter().append("g").attr("transform", (d) => "translate(" + gvtk.barwidth * d.value / maxv + "," + glyph_midy + ")");
-          obj.dotg.append("circle").attr("r", radius).attr("fill", (d) => gvtk.runtimekey2color_genespecific.get(d.name)).attr("fill-opacity", 0.2).attr("stroke", (d) => gvtk.runtimekey2color_genespecific.get(d.name)).on("mouseover", (event, d) => {
-            const valuekeyname = d.name;
-            for (const t2 of tk.tracks) {
-              const obj2 = t2.gvtkattr.get(gvtk.name);
-              if (!obj2.dotg) continue;
-              obj2.dotg.filter((d2) => d2.name == valuekeyname).select("circle").attr("fill-opacity", 1);
-            }
-            const p = event.target.getBoundingClientRect();
-            tk.tktip.clear().show(p.left, p.top);
-            const lst = [
-              { k: "sample", v: t.name },
-              { k: gvtk.multivaluekey, v: d.name },
-              { k: "value", v: d.value }
-            ];
-            setTimeout(make_table_2col(tk.tktip.d, lst), 500);
-          }).on("mouseout", (event, d) => {
-            const valuekeyname = d.name;
-            for (const t2 of tk.tracks) {
-              const obj2 = t2.gvtkattr.get(gvtk.name);
-              if (!obj2.dotg) continue;
-              obj2.dotg.filter((d2) => d2.name == valuekeyname).select("circle").attr("fill-opacity", 0.2);
-            }
-            tk.tktip.hide();
-          });
-        }
-      } else {
-        if (!Number.isFinite(obj.value) || obj.value == 0) {
-          obj.bar.transition().attr("width", 0);
-        } else {
-          obj.bar.attr("fill", gvtk.barcolor).attr("height", t.height - t.toppad - t.bottompad).transition().attr("width", Math.max(1, gvtk.barwidth * obj.value / maxv));
-        }
-      }
-    }
-    if (tk.genevaluetklst.length > 1) {
-      gvtk.label.transition().attr("x", xoff + gvtk.barwidth / 2);
-    }
-    gvtk.label.text(gene + " " + gvtk.name);
-    {
-      const axis = axisTop().ticks(3).scale(linear().domain([minv, maxv]).range([0, gvtk.barwidth]));
-      if (gvtk.axistickformat) {
-        axis.tickFormat(format(gvtk.axistickformat));
-      }
-      axisstyle({
-        axis: gvtk.axisg.transition().attr("transform", "translate(" + xoff + "," + gvtkheaderyoff + ")").call(axis),
-        color: "black",
-        showline: true
-      });
-    }
-    xoff += gvtk.barwidth + genevaluexspace;
-  }
-  if (tk.geneset.size == 1) {
-    tk.changegenelabel.text("");
-  } else {
-    tk.changegenelabel.text("CHANGE GENE");
-    if (tk.genevaluetklst.length == 1) {
-      const w = tk.genevaluetklst[0].label.node().getBBox().width;
-      tk.changegenelabel.attr("x", -block.rpad - w - 10);
-    }
-  }
-  showlegend_gvtk(tk, block);
-}
-function showlegend_gvtk(tk, block) {
-  if (!tk.genevaluetklst || !tk.tr_legend) return;
-  for (const gvtk of tk.genevaluetklst) {
-    if (gvtk.runtimekey2color_genespecific) {
-      gvtk.legend.label_genespecific.text(tk.__usegene + " " + gvtk.name + " " + gvtk.multivaluekey);
-      gvtk.legend.contentdiv.selectAll("*").remove();
-      const lst = [];
-      for (const [name, color] of gvtk.runtimekey2color_genespecific.entries()) {
-        lst.push({ name, color });
-      }
-      if (gvtk.sitekeytrickysort) {
-        lst.sort((a, b) => Number.parseInt(a.name.substr(1)) - Number.parseInt(b.name.substr(1)));
-      }
-      for (const { name, color } of lst) {
-        const cell = gvtk.legend.contentdiv.append("div").style("display", "inline-block").attr("class", "sja_clb").on("click", () => {
-          tk.legendtip.clear().showunder(cell.node());
-          if (gvtk.legend.gene2hiddenkeys.has(tk.__usegene) && gvtk.legend.gene2hiddenkeys.get(tk.__usegene).has(name)) {
-            tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Show").on("click", () => {
-              tk.legendtip.hide();
-              gvtk.legend.gene2hiddenkeys.get(tk.__usegene).delete(name);
-              showgeneplot(tk, block, tk.__usegene);
-            });
-          } else {
-            tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Hide").on("click", () => {
-              tk.legendtip.hide();
-              if (!gvtk.legend.gene2hiddenkeys.has(tk.__usegene))
-                gvtk.legend.gene2hiddenkeys.set(tk.__usegene, /* @__PURE__ */ new Set());
-              gvtk.legend.gene2hiddenkeys.get(tk.__usegene).add(name);
-              showgeneplot(tk, block, tk.__usegene);
-            });
-          }
-          tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Show only").on("click", () => {
-            tk.legendtip.hide();
-            if (!gvtk.legend.gene2hiddenkeys.has(tk.__usegene))
-              gvtk.legend.gene2hiddenkeys.set(tk.__usegene, /* @__PURE__ */ new Set());
-            gvtk.legend.gene2hiddenkeys.get(tk.__usegene).clear();
-            for (const name2 of gvtk.runtimekey2color_genespecific.keys()) {
-              if (name2 != name) gvtk.legend.gene2hiddenkeys.get(tk.__usegene).add(name2);
-            }
-            showgeneplot(tk, block, tk.__usegene);
-          });
-          tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Show all").on("click", () => {
-            tk.legendtip.hide();
-            if (!gvtk.legend.gene2hiddenkeys.has(tk.__usegene)) return;
-            gvtk.legend.gene2hiddenkeys.get(tk.__usegene).clear();
-            showgeneplot(tk, block, tk.__usegene);
-          });
-        });
-        if (gvtk.legend.gene2hiddenkeys.has(tk.__usegene) && gvtk.legend.gene2hiddenkeys.get(tk.__usegene).has(name)) {
-          cell.append("span").style("color", "#858585").style("text-decoration", "line-through").text(name);
-        } else {
-          cell.append("span").attr("class", "sja_mcdot").style("background-color", color).style("margin-left", "3px").html("&nbsp;&nbsp;");
-          cell.append("span").text(name);
-        }
-      }
-    }
-  }
-}
-function listgenes(label, tk, block) {
-  tk.tkconfigtip.clear().showunder(label.node());
-  const name = Math.random().toString();
-  for (const gene of tk.geneset) {
-    const row = tk.tkconfigtip.d.append("div").style("padding-bottom", "3px");
-    const id = Math.random().toString();
-    const radio = row.append("input").attr("type", "radio").attr("id", id).attr("name", name).on("change", () => {
-      showgeneplot(tk, block, gene);
-    });
-    if (gene == tk.__usegene) {
-      radio.attr("checked", 1);
-    }
-    row.append("label").attr("for", id).html("&nbsp;" + gene);
-  }
-}
-function movetrack(t, tk, y0) {
-  const body = select_default(document.body);
-  body.on("mousemove", (event) => {
-    const dy = event.clientY - y0;
-    t.g.attr("transform", "translate(0," + (t.y + dy) + ")");
-    let tkidx = 0;
-    for (let i = 0; i < tk.tracks.length; i++) {
-      if (tk.tracks[i].name == t.name) {
-        tkidx = i;
-        break;
-      }
-    }
-    if (dy < 0 && tkidx > 0) {
-      let t2idx = tkidx - 1, t2 = tk.tracks[t2idx];
-      while (t2.hidden) {
-        t2idx--;
-        if (t2idx < 0) {
-          return;
-        }
-        t2 = tk.tracks[t2idx];
-      }
-      if (!t2) {
-        return;
-      }
-      if (-dy >= t2.height) {
-        tk.tracks[t2idx] = t;
-        tk.tracks[tkidx] = t2;
-        t.y = t2.y;
-        t2.y += t.height;
-        t2.g.transition().attr("transform", "translate(0," + t2.y + ")");
-        y0 = event.clientY;
-      }
-    } else if (dy > 0 && tkidx < tk.tracks.length - 1) {
-      let t2idx = tkidx + 1, t2 = tk.tracks[t2idx];
-      while (t2.hidden) {
-        t2idx++;
-        if (t2idx >= tk.tracks.length) {
-          return;
-        }
-        t2 = tk.tracks[t2idx];
-      }
-      if (!t2) {
-        return;
-      }
-      if (dy >= t2.height) {
-        tk.tracks[t2idx] = t;
-        tk.tracks[tkidx] = t2;
-        t2.y = t.y;
-        t.y += t2.height;
-        t2.g.transition().attr("transform", "translate(0," + t2.y + ")");
-        y0 = event.clientY;
-      }
-    }
-  });
-  body.on("mouseup", () => {
-    t.g.transition().attr("transform", "translate(0," + t.y + ")");
-    body.on("mousemove", null).on("mouseup", null);
-  });
-}
-function configPanel(tk, block) {
-  tk.tkconfigtip.clear().showunder(tk.config_handle.node());
-  const d = tk.tkconfigtip.d;
-  {
-    const hasbw = tk.tracks.find((t) => t.type == tkt.bigwig);
-    if (hasbw) {
-      d.append("div").append("div").style("margin-bottom", "15px").style("display", "inline-block").attr("class", "sja_menuoption").text("Common settings for all bigWig member tracks").on("click", () => {
-        configPanel_bwcommon(tk, block);
-      });
-    }
-  }
-  configPanel_uniformheight(d, tk, block);
-  configPanel_tkheights(d, tk, block);
-  d.append("div").style("margin-top", "5px").style("color", "#858585").text("To reorder member tracks, drag on track name on the left of track display.");
-}
-function setrightwidth(tk, block) {
-  tk.rightheadw_tk = 30;
-  if (tk.genevaluetklst) {
-    for (const t of tk.genevaluetklst) {
-      tk.rightheadw_tk += t.barwidth;
-    }
-    tk.rightheadw_tk += genevaluexspace * (tk.genevaluetklst.length - 1);
-  }
-  block.rightheadw = 0;
-  for (const t of block.tklst) {
-    block.rightheadw = Math.max(block.rightheadw, t.rightheadw_tk);
-  }
-  block.blocksetw();
-}
-function configPanel_bwcommon(tk, block) {
-  tk.tkconfigtip.clear();
-  const mock = {
-    scale: { auto: 1 },
-    normalize: { disable: 1 }
-  };
-  if (tk.bigwigsetting) {
-    for (const k in tk.bigwigsetting) {
-      mock[k] = tk.bigwigsetting[k];
-    }
-    if (tk.bigwigsetting.scale) {
-      delete mock.scale.auto;
-      for (const k in tk.bigwigsetting.scale) mock.scale[k] = tk.bigwigsetting.scale[k];
-    }
-  }
-  {
-    const t1 = tk.tracks.find((t) => t.type == tkt.bigwig);
-    if (!mock.pcolor) mock.pcolor = t1.pcolor;
-    if (!mock.pcolor2) mock.pcolor2 = t1.pcolor2;
-    if (!mock.ncolor) mock.ncolor = t1.ncolor;
-    if (!mock.ncolor2) mock.ncolor2 = t1.ncolor2;
-    if (!mock.barheight) mock.barheight = t1.barheight;
-  }
-  bigwigconfigpanel(mock, block, tk.tkconfigtip.d, (code) => {
-    if (!tk.bigwigsetting) tk.bigwigsetting = {};
-    if (!tk.bigwigsetting.scale) tk.bigwigsetting.scale = {};
-    switch (code) {
-      case bwSetting.height:
-        tk.bigwigsetting.barheight = mock.barheight;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.barheight = mock.barheight;
-        });
-        break;
-      case bwSetting.pcolor:
-        tk.bigwigsetting.pcolor = mock.pcolor;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.pcolor = mock.pcolor;
-        });
-        break;
-      case bwSetting.ncolor:
-        tk.bigwigsetting.ncolor = mock.ncolor;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.ncolor = mock.ncolor;
-        });
-        break;
-      case bwSetting.pcolor2:
-        tk.bigwigsetting.pcolor2 = mock.pcolor2;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.pcolor2 = mock.pcolor2;
-        });
-        break;
-      case bwSetting.ncolor2:
-        tk.bigwigsetting.ncolor2 = mock.ncolor2;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.ncolor2 = mock.ncolor2;
-        });
-        break;
-      case bwSetting.autoscale:
-        tk.bigwigsetting.scale.auto = 1;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.scale.auto = 1;
-        });
-        break;
-      case bwSetting.fixedscale:
-        delete tk.bigwigsetting.scale.auto;
-        tk.bigwigsetting.scale.min = mock.scale.min;
-        tk.bigwigsetting.scale.max = mock.scale.max;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) {
-            delete t.scale.auto;
-            t.scale.min = mock.scale.min;
-            t.scale.max = mock.scale.max;
-          }
-        });
-        break;
-      case bwSetting.percentilescale:
-        delete tk.bigwigsetting.scale.auto;
-        tk.bigwigsetting.scale.percentile = mock.scale.percentile;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) {
-            delete t.scale.auto;
-            t.scale.percentile = mock.scale.percentile;
-          }
-        });
-        break;
-      case bwSetting.nodotplot:
-        delete tk.bigwigsetting.dotplotfactor;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) delete t.dotplotfactor;
-        });
-        break;
-      case bwSetting.usedotplot:
-        tk.bigwigsetting.dotplotfactor = mock.dotplotfactor;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.dotplotfactor = mock.dotplotfactor;
-        });
-        break;
-      case bwSetting.usedividefactor:
-        delete tk.bigwigsetting.normalize.disable;
-        tk.bigwigsetting.normalize.dividefactor = mock.normalize.dividefactor;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) {
-            delete t.normalize.disable;
-            t.normalize.dividefactor = mock.normalize.dividefactor;
-          }
-        });
-        break;
-      case bwSetting.nodividefactor:
-        tk.bigwigsetting.normalize.disable = 1;
-        tk.tracks.forEach((t) => {
-          if (t.type == tkt.bigwig) t.normalize.disable = 1;
-        });
-        break;
-    }
-    loadTk(tk, block);
-  });
-}
-function configPanel_uniformheight(d, tk, block) {
-  const row = d.append("div").style("margin-bottom", "10px");
-  row.append("span").style("color", "#858585").html("Set uniform height to all member tracks&nbsp;");
-  let maxheight = 0;
-  for (const t of tk.tracks) {
-    switch (t.type) {
-      case tkt.bigwig:
-        maxheight = Math.max(maxheight, t.barheight);
-        break;
-      case tkt.bedj:
-        maxheight = Math.max(maxheight, t.stackheight);
-        break;
-    }
-  }
-  row.append("input").attr("type", "number").property("value", maxheight).attr("min", 5).style("width", "80px").on("keyup", (event) => {
-    if (event.code != "Enter") return;
-    const v = Number.parseInt(event.target.value);
-    for (const t of tk.tracks) {
-      switch (t.type) {
-        case tkt.bigwig:
-          t.barheight = v;
-          break;
-        case tkt.bedj:
-          t.stackheight = v;
-          break;
-      }
-    }
-    block.tk_load(tk);
-  });
-}
-function configPanel_tkheights(d, tk, block) {
-  d.append("div").style("margin-bottom", "5px").style("color", "#858585").text("Set height for each track:");
-  let scrollholder = d;
-  if (tk.tracks.length > 8) {
-    scrollholder = d.append("div").style("display", "inline-block").style("height", "200px").style("resize", "vertical").style("overflow-y", "scroll");
-  }
-  const table = scrollholder.append("table").style("margin-left", "20px");
-  for (const t of tk.tracks) {
-    const tr = table.append("tr");
-    tr.append("td").text(t.name).style("vertical-align", "top");
-    const td = tr.append("td");
-    let v;
-    switch (t.type) {
-      case tkt.bigwig:
-        v = t.barheight;
-        break;
-      case tkt.bedj:
-        v = t.stackheight;
-        break;
-    }
-    td.append("input").attr("type", "number").property("value", v).attr("min", 5).style("width", "80px").on("keyup", (event) => {
-      if (event.code != "Enter") return;
-      const v2 = Number.parseInt(event.target.value);
-      switch (t.type) {
-        case tkt.bigwig:
-          t.barheight = v2;
-          break;
-        case tkt.bedj:
-          t.stackheight = v2;
-          break;
-      }
-      block.tk_load(tk);
-    });
-  }
-}
-function gvtklabelclick(gvtk, tk, block) {
-  tk.tkconfigtip.clear().showunder(gvtk.label.node());
-  {
-    const row = tk.tkconfigtip.d.append("div").style("margin-bottom", "10px").style("color", "#858585");
-    row.append("span").text(gvtk.name);
-    row.append("span").html("&nbsp;CONFIG").style("font-size", ".7em");
-  }
-  const table = tk.tkconfigtip.d.append("table");
-  {
-    const tr = table.append("tr");
-    tr.append("td").text("Max bar width");
-    tr.append("td").append("input").attr("type", "number").property("value", gvtk.barwidth).attr("min", 50).style("width", "50px").on("keyup", (event) => {
-      if (event.code != "Enter" && event.code != "NumpadEnter") return;
-      const w = Number.parseInt(event.target.value);
-      if (Number.isNaN(w) || w < 50) return;
-      gvtk.barwidth = w;
-      setrightwidth(tk, block);
-      showgeneplot(tk, block, tk.__usegene);
-    });
-  }
-  if (!gvtk.multivaluekey) {
-    const tr = table.append("tr");
-    tr.append("td").text("Bar color");
-    tr.append("td").append("input").attr("type", "color").property("value", gvtk.barcolor).on("change", (event) => {
-      gvtk.barcolor = event.target.value;
-      if (gvtk.multivaluekey) {
-      } else {
-        for (const t of tk.tracks) {
-          t.gvtkattr.get(gvtk.name).bar.attr("fill", gvtk.barcolor);
-        }
-      }
-    });
-    table.append("tr").append("td").attr("colspan", 2).append("button").text("Sort samples").on("click", () => {
-      tk.tracks.sort((a, b) => {
-        const va = a.gvtkattr.get(gvtk.name).value;
-        const vb = b.gvtkattr.get(gvtk.name).value;
-        if (vb == void 0) {
-          if (va == void 0) return 0;
-          return -1;
-        }
-        if (va == void 0) return 1;
-        return vb - va;
-      });
-      const currentgene = tk.__usegene;
-      render_tk(tk, block);
-      showgeneplot(tk, block, currentgene);
-      tk.tkconfigtip.hide();
-    });
-  }
-  if (gvtk.multivaluekey) {
-  }
-}
-function tkerror(t, msg) {
-  t.errg.append("text").text(msg).attr("font-size", 12).attr("y", 14);
-}
-export {
-  loadTk
-};
-//# sourceMappingURL=block.tk.pgv-C2N7UFYT.js.map