@sjcrh/proteinpaint-client 2.201.0 → 2.202.0

package/dist/chunk-2TWVFQD2.js

@@ -0,0 +1,494 @@
+import {
+  rehydrateFilter
+} from "./chunk-SKMFMGCD.js";
+import {
+  findParent,
+  getFilter,
+  getFilterItemByTag,
+  getSamplelstTW
+} from "./chunk-73PFJ2VF.js";
+import {
+  importPlot
+} from "./chunk-ZZMIDYRE.js";
+import {
+  StoreApi,
+  StoreBase
+} from "./chunk-H6INPPUC.js";
+import {
+  CustomError
+} from "./chunk-75T7ESEO.js";
+
+// mass/store.ts
+var idPrefix = "_MASS_AUTOID_" + Math.random().toString().slice(-6);
+var id = 0;
+var usedPlotIds = /* @__PURE__ */ new Set();
+function getId() {
+  return idPrefix + "_" + id++;
+}
+var navHeaderModes = /* @__PURE__ */ new Set([
+  "with_tabs",
+  // default, shows tabs cohort/charts/filter etc
+  "hidden",
+  // no header
+  "search_only",
+  // ?
+  "hide_search",
+  // ?
+  "with_cohortHtmlSelect",
+  // only show cohort toggle as <select>
+  "only_buttons"
+]);
+var defaultState = {
+  nav: {
+    header_mode: "with_tabs",
+    activeTab: 0
+    // -1 for no active tab and all closed
+  },
+  // will be ignored if there is no dataset termdb.selectCohort
+  // or value will be set to match a filter node that has been tagged
+  // as 'cohortfilter' in state.termfilter.filter
+  activeCohort: 0,
+  search: { isVisible: true },
+  plots: [],
+  termfilter: {
+    filter: {
+      type: "tvslst",
+      in: true,
+      join: "",
+      lst: []
+    }
+  },
+  reuse: {
+    customTermQ: {
+      byId: {},
+      // non-dictionary terms do not have a term.id,
+      // save by term.type + name?
+      byName: {}
+    }
+  },
+  groups: [],
+  // element: {name=str, filter={}}, to show in Groups tab
+  customTerms: [],
+  // element: {name=str, term={}}, able to attach more attr to object if needed
+  autoSave: true
+};
+var MassStore = class extends StoreBase {
+  constructor(opts, api) {
+    super(opts);
+    // expected class-specific props
+    this.defaultState = defaultState;
+    this.plotAdjusters = /* @__PURE__ */ new WeakMap();
+    this.app = opts.app;
+    this.api = api;
+    this.type = "store";
+    let savedState = {};
+    try {
+      const key = window.navigator.webdriver && window["SJPP_E2E_STORAGE_STATES_KEY"];
+      const savedStateStr = key && window.localStorage.getItem("SJPP_E2E_STORAGE_STATES") || "{}";
+      savedState = JSON.parse(savedStateStr)[key]?.state || {};
+    } catch (_) {
+      savedState = {};
+    }
+    this.state = this.copyMerge(this.toJson(defaultState), opts.state, savedState);
+    this.prevGeneratedId = 0;
+  }
+  static {
+    this.type = "store";
+  }
+  validateOpts(opts) {
+    const s = opts.state;
+    if (s.vocab.dslabel) {
+      if (!s.vocab.genome) throw ".state[.vocab].genome missing";
+    } else {
+      if (!Array.isArray(s.vocab.terms)) throw "vocab.terms must be an array of objects";
+    }
+    return opts;
+  }
+  validateState() {
+    if (!navHeaderModes.has(this.state.nav.header_mode)) throw "invalid state.nav.header_mode";
+  }
+  async init() {
+    try {
+      this.state.termdbConfig = await this.app.vocabApi.getTermdbConfig();
+      await this.setTermfilter();
+      await this.rehydrateGroups();
+      await this.app.vocabApi.main({
+        termfilter: JSON.parse(JSON.stringify(this.state.termfilter)),
+        termdbConfig: this.state.termdbConfig
+      });
+      const invalidPlots = [];
+      for (const [i, savedPlot] of this.state.plots.entries()) {
+        let plot;
+        try {
+          const _ = await importPlot(savedPlot.chartType);
+          plot = await _.getPlotConfig(savedPlot, this.app, this.state.activeCohort);
+        } catch (e) {
+          this.app.printError(e);
+          console.error(`getPlotConfig() failed: ${e}`);
+        }
+        if (!plot) {
+          invalidPlots.push(i);
+          continue;
+        }
+        this.state.plots[i] = plot;
+        if (!("id" in plot)) plot.id = `_AUTOID_${id++}_${i}`;
+        if (plot.mayAdjustConfig) {
+          plot.mayAdjustConfig(plot);
+          this.plotAdjusters.set(plot, plot.mayAdjustConfig);
+          delete plot.mayAdjustConfig;
+        }
+      }
+      if (invalidPlots.length) {
+        for (const i of invalidPlots) {
+          this.state.plots.splice(i, 1);
+        }
+      }
+    } catch (e) {
+      console.log("store.init() error", e);
+      throw e;
+    }
+  }
+  setId(item) {
+    item.$id = this.prevGeneratedId++;
+    if (item.$lst) {
+      for (const subitem of item.$lst) {
+        this.setId(subitem);
+      }
+    }
+  }
+  async setTermfilter() {
+    let filterUiRoot = getFilterItemByTag(this.state.termfilter.filter, "filterUiRoot");
+    if (!filterUiRoot) {
+      this.state.termfilter.filter.tag = "filterUiRoot";
+      filterUiRoot = this.state.termfilter.filter;
+    }
+    await Promise.all(rehydrateFilter(this.state.termfilter.filter, this.app.vocabApi));
+    if (!this.state.termdbConfig.selectCohort) {
+      this.state.activeCohort = -1;
+      if (this.state.activeTab === 0) this.state.activeTab = 1;
+      if (this.state.nav.header_mode === "with_cohortHtmlSelect") {
+        console.warn(`no termdbConfig.selectCohort to use for nav.header_mode = 'with_cohortHtmlSelect'`);
+        this.state.nav.header_mode = "search_only";
+      }
+    } else {
+      let cohortFilter = getFilterItemByTag(this.state.termfilter.filter, "cohortFilter");
+      if (!cohortFilter) {
+        cohortFilter = {
+          tag: "cohortFilter",
+          type: "tvs",
+          tvs: {
+            term: JSON.parse(JSON.stringify(this.state.termdbConfig.selectCohort.term)),
+            values: this.state.activeCohort == -1 ? [] : this.state.termdbConfig.selectCohort.values[this.state.activeCohort].keys.map((key) => {
+              return { key, label: key };
+            })
+          }
+        };
+        this.state.termfilter.filter = {
+          type: "tvslst",
+          in: true,
+          join: "and",
+          lst: [cohortFilter, filterUiRoot]
+        };
+      } else {
+        const sorter = (a, b) => a < b ? -1 : 1;
+        cohortFilter.tvs.values.sort((a, b) => a.key < b.key ? -1 : 1);
+        const keysStr = JSON.stringify(cohortFilter.tvs.values.map((v) => v.key).sort(sorter));
+        const i = this.state.termdbConfig.selectCohort.values.findIndex(
+          (v) => keysStr == JSON.stringify(v.keys.sort(sorter))
+        );
+        if (this.state.activeCohort !== -1 && this.state.activeCohort !== 0 && i !== this.state.activeCohort) {
+          console.log("Warning: cohortFilter will override the state.activeCohort due to mismatch");
+        }
+        this.state.activeCohort = i;
+      }
+    }
+  }
+  async rehydrateGroups() {
+    const lst = [];
+    for (const g of this.state.groups) {
+      lst.push(...rehydrateFilter(g.filter, this.app.vocabApi));
+    }
+    await Promise.all(lst);
+  }
+};
+MassStore.prototype.actions = {
+  // Type '{ app_refresh(this: MassStore, action?: {}): Promise<void>; tab_set(action: any): void; cohort_set(action: any): void; plot_prep(action: any): Promise<void>; ... 13 more ...; delete_group({ name }: { ...; }): void; }' is not assignable to type '(action: { [prop: string]: any; type: string; }) => void | Promise<void>'.
+  // Object literal may only specify known properties, and 'app_refresh' does not exist in type '(action: { [prop: string]: any; type: string; }) => void | Promise<void>'.
+  async app_refresh(action) {
+    this.state = this.copyMerge(this.toJson(this.state), action.state || {});
+    const subactionPlotIds = /* @__PURE__ */ new Set();
+    const promises = [];
+    if (action.subactions) {
+      for (const a of action.subactions) {
+        promises.push(this.actions[a.type].call(this, a));
+        if (a.type.startsWith("plot_")) subactionPlotIds.add(a.id);
+      }
+    }
+    await Promise.all(promises);
+    for (const plot of this.state.plots) {
+      const mayAdjustConfig = this.plotAdjusters.get(plot);
+      if (mayAdjustConfig && !subactionPlotIds.has(plot.id)) {
+        mayAdjustConfig(plot, action.config);
+      }
+    }
+  },
+  tab_set(action) {
+    this.state.nav.activeTab = action.activeTab;
+  },
+  cohort_set(action) {
+    this.state.activeCohort = action.activeCohort;
+    const cohort = this.state.termdbConfig.selectCohort.values[action.activeCohort];
+    const cohortFilter = getFilterItemByTag(this.state.termfilter.filter, "cohortFilter");
+    if (!cohortFilter) throw `No item tagged with 'cohortFilter'`;
+    cohortFilter.tvs.values = cohort.keys.map((key) => {
+      return { key, label: key };
+    });
+  },
+  // dispatch "plot_prep" action to produce a 'initiating' UI of this plot, for user to fill in additional details to launch the plot
+  // example: table, scatterplot which requires user to select two terms
+  async plot_prep(action) {
+    if (usedPlotIds.has(action.id)) delete action.id;
+    const plot = {
+      // rx.getComponents() relies on parsing dot-separated key names that breaks if a key has a dot,
+      // the plot.id value should be assumed to be auto-generated and to not have any non-rx usage expectations
+      id: "id" in action && !action.id.includes(".") ? action.id : getId()
+    };
+    usedPlotIds.add(plot.id);
+    if (!action.config) throw ".config{} missing for plot_prep";
+    if (action.config.chartType && Object.keys(action.config).length == 1) {
+      const _ = await importPlot(action.config.chartType);
+      const config = await _.getPlotConfig(action.config, this.app, this.state.activeCohort);
+      action.config = Object.assign(config, action.config);
+    }
+    Object.assign(plot, action.config);
+    this.state.plots.push(plot);
+  },
+  async plot_create(action) {
+    if (usedPlotIds.has(action.id)) delete action.id;
+    const _ = await importPlot(action.config.chartType);
+    const plot = await _.getPlotConfig(action.config, this.app, this.state.activeCohort);
+    if (!("id" in action) || action.id.includes(".")) action.id = getId();
+    plot.id = action.id;
+    usedPlotIds.add(plot.id);
+    if (plot.mayAdjustConfig) {
+      plot.mayAdjustConfig(plot);
+      this.plotAdjusters.set(plot, plot.mayAdjustConfig);
+      delete plot.mayAdjustConfig;
+    }
+    this.state.plots.push(plot);
+    if (plot.sections) {
+      for (const section of plot.sections) {
+        for (const p of section.plots) {
+          p.parentId = plot.id;
+          if (!p.id) p.id = getId();
+          const _2 = await importPlot(p.chartType);
+          const config = await _2.getPlotConfig(p, this.app, this.state.activeCohort);
+          this.state.plots.push(config);
+        }
+      }
+    }
+  },
+  plot_edit(action) {
+    const plot = this.state.plots.find((p) => p.id === action.id);
+    if (!plot) {
+      throw new CustomError(`missing plot config for id='${action.id}' in store.plot_edit()`, {
+        name: "MISSING_PLOT_CONFIG",
+        level: "warn"
+      });
+    }
+    this.copyMerge(plot, action.config, action.opts ? action.opts : {});
+    const mayAdjustConfig = this.plotAdjusters.get(plot);
+    if (mayAdjustConfig) mayAdjustConfig(plot, action.config);
+    if (action.config && "cutoff" in action.config) {
+      plot.cutoff = action.config.cutoff;
+    } else {
+      delete plot.cutoff;
+    }
+    if (!action.parentId && plot.parentId) action.parentId = plot.parentId;
+  },
+  plot_delete(action) {
+    const i = this.state.plots.findIndex((p) => p.id === action.id);
+    if (i !== -1) {
+      this.state.plots.splice(i, 1);
+      const plot = this.state.plots[i];
+      if (!action.parentId && plot?.parentId) action.parentId = plot.parentId;
+    }
+  },
+  plot_nestedEdits(action) {
+    const plot = this.state.plots.find((p) => p.id === action.id);
+    if (!plot) {
+      throw new CustomError(`missing plot config for id='${action.id}' in store.plot_edit_nested`, {
+        name: "MISSING_PLOT_CONFIG",
+        level: "warn"
+      });
+    }
+    for (const edit of action.edits) {
+      const lastKey = edit.nestedKeys.pop();
+      const obj = edit.nestedKeys.reduce((obj2, key) => obj2[key], plot);
+      obj[lastKey] = edit.value;
+    }
+    if (!action.parentId && plot.parentId) action.parentId = plot.parentId;
+  },
+  // TODO: delete this action? does not seem to be used
+  async plot_splice(action) {
+    for (const a of action.subactions) {
+      await this.actions[a.type].call(this, a);
+    }
+  },
+  filter_replace(action) {
+    if ("filter0" in action) {
+      this.state.termfilter.filter0 = action.filter0;
+      return;
+    }
+    const replacementFilter = action.filter ? action.filter : { type: "tvslst", join: "", in: 1, lst: [] };
+    if (!action.filter.tag) {
+      this.state.termfilter.filter = replacementFilter;
+    } else {
+      const filter = getFilterItemByTag(this.state.termfilter.filter, action.filter.tag);
+      if (!filter) throw `cannot replace missing filter with tag '${action.filter.tag}'`;
+      const parent = findParent(this.state.termfilter.filter, filter.$id);
+      if (parent == filter) {
+        this.state.termfilter.filter = replacementFilter;
+      } else {
+        const i = parent.lst.indexOf(filter);
+        parent.lst[i] = replacementFilter;
+      }
+    }
+    if (this.app.opts.app?.onFilterChange) this.app.opts.app.onFilterChange(this.state.plots);
+  },
+  cache_termq({ termId, q }) {
+    if (!termId) throw `missing termId for caching custom term.q`;
+    if (!q?.reuseId) throw `missing or empty tw.q.reuseId as cache identifier for term='${termId}'`;
+    const cache = this.state.reuse.customTermQ.byId;
+    if (!cache[termId]) cache[termId] = {};
+    cache[termId][q.reuseId] = q;
+    for (const plot of this.state.plots) {
+      if (!(plot.chartType in getTwsByChartType)) continue;
+      const twlst = getTwsByChartType[plot.chartType](plot);
+      for (const tw of twlst) {
+        if (tw?.q?.reuseId === q.reuseId) tw.q = q;
+      }
+    }
+  },
+  uncache_termq({ term, q }) {
+    if (!term.id) throw `missing term.id for uncaching custom term.q`;
+    if (!q.reuseId) throw `missing qname as uncache identifier for term.id='${term.id}'`;
+    const cache = this.state.reuse.customTermQ.byId[term.id];
+    if (!cache) throw `missing term.q cache for term.id='${term.id}`;
+    if (!(q.reuseId in cache)) console.warn(`q.reuseId='${q.cacheid}' not cached for term.id='${term.id}'`);
+    else {
+      delete cache[q.reuseId];
+      for (const plot of this.state.plots) {
+        if (!(plot.chartType in getTwsByChartType)) continue;
+        const twlst = getTwsByChartType[plot.chartType](plot);
+        for (const tw of twlst) {
+          if (tw.q.reuseId === q.reuseId) {
+            delete tw.q.reuseId;
+            delete tw.q.name;
+          }
+        }
+      }
+    }
+  },
+  add_customTerm(action) {
+    const i = action.obj.id ? this.state.customTerms.findIndex((term) => term.id === action.obj.id) : -1;
+    if (i === -1) this.state.customTerms.push(action.obj);
+    else this.state.customTerms[i] = action.obj;
+  },
+  delete_customTerm({ id: id2, name }) {
+    const i = this.state.customTerms.findIndex((term) => id2 ? term.id === id2 : term.name == name);
+    if (i != -1) this.state.customTerms.splice(i, 1);
+  },
+  add_group(action) {
+    if (this.state.nav.header_mode != "hidden") {
+      const group = action.obj;
+      const name = `Group ${this.state.groups.length + 1}`;
+      const samplelstTW = getSamplelstTW([group]);
+      const appGroup = {
+        name,
+        filter: getFilter(samplelstTW),
+        plotId: group.plotId
+      };
+      this.state.groups.push(appGroup);
+      this.state.nav.activeTab = 1;
+    } else if ("plotId" in action.obj) {
+      const plot = this.state.plots.find((p) => p.id == action.obj.plotId);
+      if (plot.groups) {
+        action.obj.index = plot.groups.length;
+        action.obj.name = `Group ${plot.groups.length + 1}`;
+        plot.groups.push(action.obj);
+      }
+    }
+  },
+  rename_group(action) {
+    const index = action.index;
+    const newName = action.newName;
+    if (this.state.nav.header_mode != "hidden") {
+      this.state.groups[index].name = newName;
+    } else {
+      for (const plot of this.state.plots) {
+        if (plot?.groups) {
+          plot.groups[index].name = newName;
+        }
+      }
+    }
+  },
+  change_color_group(action) {
+    const index = action.index;
+    const newColor = action.newColor;
+    if (this.state.nav.header_mode != "hidden") {
+      this.state.groups[index].color = newColor;
+    } else {
+      for (const plot of this.state.plots) {
+        if (plot?.groups) {
+          plot.groups[index].color = newColor;
+        }
+      }
+    }
+  },
+  delete_group({ name }) {
+    if (this.state.nav.header_mode != "hidden") {
+      const i = this.state.groups.findIndex((i2) => i2.name == name);
+      if (i != -1) this.state.groups.splice(i, 1);
+    } else {
+      for (const plot of this.state.plots) {
+        if (plot?.groups) {
+          const j = plot.groups.findIndex((j2) => j2.name == name);
+          if (j != -1) plot.groups.splice(j, 1);
+        }
+      }
+    }
+  }
+};
+var getNestedChartSeriesDataTws = (plot) => [plot.term0, plot.term, plot.term2].filter((d) => !!d);
+var getTwsByChartType = {
+  summary: getNestedChartSeriesDataTws,
+  survival: getNestedChartSeriesDataTws,
+  cuminc: getNestedChartSeriesDataTws,
+  regression: (plot) => [plot.outcome, ...plot.independent].filter((d) => !!d),
+  matrix: (plot) => plot.termgroups.reduce((arr, grp) => {
+    arr.push(...grp.lst);
+    return arr;
+  }, [])
+};
+var storeInit = StoreApi.getInitFxn(MassStore);
+
+// mass/skipPrevActionAbort.ts
+var globalStateKeys = ["termfilter", "activeCohort", "plots"];
+var isGlobalActionType = (type) => type.startsWith("filter") || type.startsWith("cohort");
+function skipPrevActionAbort(action) {
+  if (!action) return false;
+  if (isGlobalActionType(action.type)) return false;
+  if (action.type == "app_refresh") {
+    if (action.subactions?.find((a) => isGlobalActionType(a.type))) return false;
+    if (action.state) return !globalStateKeys.find((key) => key in action.state);
+    return Boolean(action.subactions);
+  }
+  return true;
+}
+
+export {
+  storeInit,
+  skipPrevActionAbort
+};
+//# sourceMappingURL=chunk-2TWVFQD2.js.map

package/dist/chunk-2TWVFQD2.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../mass/store.ts", "../mass/skipPrevActionAbort.ts"],
+  "sourcesContent": ["import { StoreApi, StoreBase, type AppApi, type RxStore } from '#rx'\nimport { getFilterItemByTag, findParent } from '#filter/filter'\nimport { getSamplelstTW, getFilter } from './groups.js'\nimport { rehydrateFilter } from '../filter/rehydrateFilter.js'\nimport { importPlot } from '#plots/importPlot.js'\nimport { CustomError } from '#shared/helpers.js'\n\n/*\ntmp comment on plot state. later properly define it in typescript\n\na basic plot:\n{\n\tchartType: string\n\t... other properties\n\tid?: dynamically assigned to identify this plot\n}\n\nSometimes a plot may have sections where each section has a name and an array of plots, like in the report plot. \nAn example of such plot is seeing in carereg. In that case the plot config will look like this:\n{\n\tid?: dynamically assigned to identify this plot\n\tsections: {\n\t\tname: string\n\t\tplots: {\n\t\t\tchartType: string\n\t\t\t... other properties of this child plot\n\t\t\tparentId?: dynamically assigned to point to plot.id\n\t\t}[]\n\t\t... other properties of a section\n\t}[]\n}\nThe state of each plot is added to the appState plots array, so that these plots can be treated as regular plots and be embedded in a parent plot.\n*/\n\n// to distinguish from IDs assigned by other code or users\nconst idPrefix = '_MASS_AUTOID_' + Math.random().toString().slice(-6)\nlet id = 0 // Number((+new Date()).toString().slice(-8))\n\n// will be used to track plotId's that have already been used, so that plot_prep() and\n// plot_create() will avoid conflicts from having a plotId that's used by different plots\nconst usedPlotIds = new Set()\n\nfunction getId() {\n\treturn idPrefix + '_' + id++\n}\n\nconst navHeaderModes = new Set([\n\t'with_tabs', // default, shows tabs cohort/charts/filter etc\n\t'hidden', // no header\n\t'search_only', // ?\n\t'hide_search', // ?\n\t'with_cohortHtmlSelect', // only show cohort toggle as <select>\n\t'only_buttons'\n])\n\nconst defaultState = {\n\tnav: {\n\t\theader_mode: 'with_tabs',\n\t\tactiveTab: 0 // -1 for no active tab and all closed\n\t},\n\t// will be ignored if there is no dataset termdb.selectCohort\n\t// or value will be set to match a filter node that has been tagged\n\t// as 'cohortfilter' in state.termfilter.filter\n\tactiveCohort: 0,\n\tsearch: { isVisible: true },\n\tplots: [],\n\ttermfilter: {\n\t\tfilter: {\n\t\t\ttype: 'tvslst',\n\t\t\tin: true,\n\t\t\tjoin: '',\n\t\t\tlst: []\n\t\t}\n\t},\n\treuse: {\n\t\tcustomTermQ: {\n\t\t\tbyId: {},\n\t\t\t// non-dictionary terms do not have a term.id,\n\t\t\t// save by term.type + name?\n\t\t\tbyName: {}\n\t\t}\n\t},\n\tgroups: [], // element: {name=str, filter={}}, to show in Groups tab\n\tcustomTerms: [], // element: {name=str, term={}}, able to attach more attr to object if needed\n\tautoSave: true\n}\n\n// one store for the whole MASS app\nclass MassStore extends StoreBase implements RxStore {\n\tstatic type = 'store'\n\n\t// expected RxStore, some are already declared/set in AppBase\n\tapp: AppApi\n\tapi: StoreApi\n\ttype: string\n\n\t// expected class-specific props\n\tdefaultState = defaultState\n\tactions!: {\n\t\t[actionType: string]: (action: { type: string; [prop: string]: any }) => void | Promise<void>\n\t}\n\n\tplotAdjusters = new WeakMap()\n\n\tconstructor(opts, api) {\n\t\tsuper(opts)\n\t\tthis.app = opts.app\n\t\tthis.api = api\n\t\tthis.type = 'store'\n\t\tlet savedState = {}\n\t\ttry {\n\t\t\t// only automatically detect and recover saved state when webdriver is detected\n\t\t\tconst key = window.navigator.webdriver && window['SJPP_E2E_STORAGE_STATES_KEY']\n\t\t\tconst savedStateStr = (key && window.localStorage.getItem('SJPP_E2E_STORAGE_STATES')) || '{}'\n\t\t\tsavedState = JSON.parse(savedStateStr)[key]?.state || {}\n\t\t\t// console.log(107, 'mass/store savedState', key, savedState)\n\t\t} catch (_) {\n\t\t\t// okay to ignore error of not being able to recover state\n\t\t\tsavedState = {}\n\t\t}\n\t\tthis.state = this.copyMerge(this.toJson(defaultState), opts.state, savedState)\n\t\tthis.prevGeneratedId = 0\n\t}\n\n\tvalidateOpts(opts) {\n\t\tconst s = opts.state\n\t\t// assume that any vocabulary with a route\n\t\t// will require genome + dslabel\n\t\tif (s.vocab.dslabel) {\n\t\t\tif (!s.vocab.genome) throw '.state[.vocab].genome missing'\n\t\t} else {\n\t\t\tif (!Array.isArray(s.vocab.terms)) throw 'vocab.terms must be an array of objects'\n\t\t}\n\t\treturn opts\n\t}\n\n\tvalidateState() {\n\t\t// nav.header_mode should always be present\n\t\tif (!navHeaderModes.has(this.state.nav.header_mode)) throw 'invalid state.nav.header_mode'\n\t}\n\n\tasync init() {\n\t\ttry {\n\t\t\tthis.state.termdbConfig = await this.app.vocabApi.getTermdbConfig()\n\t\t\tawait this.setTermfilter()\n\t\t\tawait this.rehydrateGroups()\n\n\t\t\t// vocab.state.termfilter may be used in getPlotConfig() when rehydrating terms,\n\t\t\t// so manually set it here\n\t\t\tawait this.app.vocabApi.main({\n\t\t\t\ttermfilter: JSON.parse(JSON.stringify(this.state.termfilter)),\n\t\t\t\ttermdbConfig: this.state.termdbConfig\n\t\t\t})\n\t\t\tconst invalidPlots: any[] = []\n\t\t\tfor (const [i, savedPlot] of this.state.plots.entries()) {\n\t\t\t\tlet plot\n\t\t\t\ttry {\n\t\t\t\t\tconst _ = await importPlot(savedPlot.chartType)\n\t\t\t\t\t// this.state{} is already fully set with initial state, thus okay to pass to getPlotConfig()\n\t\t\t\t\tplot = await _.getPlotConfig(savedPlot, this.app, this.state.activeCohort)\n\t\t\t\t} catch (e) {\n\t\t\t\t\tthis.app.printError(e)\n\t\t\t\t\tconsole.error(`getPlotConfig() failed: ${e}`)\n\t\t\t\t}\n\t\t\t\tif (!plot) {\n\t\t\t\t\tinvalidPlots.push(i)\n\t\t\t\t\tcontinue\n\t\t\t\t}\n\t\t\t\tthis.state.plots[i] = plot\n\t\t\t\tif (!('id' in plot)) plot.id = `_AUTOID_${id++}_${i}`\n\t\t\t\tif (plot.mayAdjustConfig) {\n\t\t\t\t\tplot.mayAdjustConfig(plot)\n\t\t\t\t\tthis.plotAdjusters.set(plot, plot.mayAdjustConfig)\n\t\t\t\t\tdelete plot.mayAdjustConfig\n\t\t\t\t}\n\t\t\t}\n\t\t\tif (invalidPlots.length) {\n\t\t\t\tfor (const i of invalidPlots) {\n\t\t\t\t\tthis.state.plots.splice(i, 1)\n\t\t\t\t}\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tconsole.log('store.init() error', e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tsetId(item) {\n\t\titem.$id = this.prevGeneratedId++\n\t\tif (item.$lst) {\n\t\t\tfor (const subitem of item.$lst) {\n\t\t\t\tthis.setId(subitem)\n\t\t\t}\n\t\t}\n\t}\n\n\tasync setTermfilter() {\n\t\tlet filterUiRoot = getFilterItemByTag(this.state.termfilter.filter, 'filterUiRoot')\n\t\tif (!filterUiRoot) {\n\t\t\tthis.state.termfilter.filter.tag = 'filterUiRoot'\n\t\t\tfilterUiRoot = this.state.termfilter.filter\n\t\t}\n\n\t\tawait Promise.all(rehydrateFilter(this.state.termfilter.filter, this.app.vocabApi))\n\n\t\tif (!this.state.termdbConfig.selectCohort) {\n\t\t\tthis.state.activeCohort = -1\n\t\t\t// since the cohort tab will be hidden, default to making the filter tab active\n\t\t\tif (this.state.activeTab === 0) this.state.activeTab = 1\n\t\t\tif (this.state.nav.header_mode === 'with_cohortHtmlSelect') {\n\t\t\t\tconsole.warn(`no termdbConfig.selectCohort to use for nav.header_mode = 'with_cohortHtmlSelect'`)\n\t\t\t\tthis.state.nav.header_mode = 'search_only'\n\t\t\t}\n\t\t} else {\n\t\t\tlet cohortFilter = getFilterItemByTag(this.state.termfilter.filter, 'cohortFilter')\n\t\t\tif (!cohortFilter) {\n\t\t\t\t// support legacy state.termfilter and test scripts that\n\t\t\t\t// that does not specify a cohort when required;\n\t\t\t\t// will use state.activeCohort if not -1\n\t\t\t\tcohortFilter = {\n\t\t\t\t\ttag: 'cohortFilter',\n\t\t\t\t\ttype: 'tvs',\n\t\t\t\t\ttvs: {\n\t\t\t\t\t\tterm: JSON.parse(JSON.stringify(this.state.termdbConfig.selectCohort.term)),\n\t\t\t\t\t\tvalues:\n\t\t\t\t\t\t\tthis.state.activeCohort == -1\n\t\t\t\t\t\t\t\t? []\n\t\t\t\t\t\t\t\t: this.state.termdbConfig.selectCohort.values[this.state.activeCohort].keys.map(key => {\n\t\t\t\t\t\t\t\t\t\treturn { key, label: key }\n\t\t\t\t\t\t\t\t  })\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tthis.state.termfilter.filter = {\n\t\t\t\t\ttype: 'tvslst',\n\t\t\t\t\tin: true,\n\t\t\t\t\tjoin: 'and',\n\t\t\t\t\tlst: [cohortFilter, filterUiRoot]\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\tconst sorter = (a, b) => (a < b ? -1 : 1)\n\t\t\t\tcohortFilter.tvs.values.sort((a, b) => (a.key < b.key ? -1 : 1))\n\t\t\t\tconst keysStr = JSON.stringify(cohortFilter.tvs.values.map(v => v.key).sort(sorter))\n\t\t\t\tconst i = this.state.termdbConfig.selectCohort.values.findIndex(\n\t\t\t\t\tv => keysStr == JSON.stringify(v.keys.sort(sorter))\n\t\t\t\t)\n\t\t\t\tif (this.state.activeCohort !== -1 && this.state.activeCohort !== 0 && i !== this.state.activeCohort) {\n\t\t\t\t\tconsole.log('Warning: cohortFilter will override the state.activeCohort due to mismatch')\n\t\t\t\t}\n\t\t\t\tthis.state.activeCohort = i\n\t\t\t}\n\t\t}\n\t}\n\n\tasync rehydrateGroups() {\n\t\t// rehydrate filter terms of each group\n\t\tconst lst: any[] = []\n\t\tfor (const g of this.state.groups) {\n\t\t\tlst.push(...rehydrateFilter(g.filter, this.app.vocabApi))\n\t\t}\n\t\tawait Promise.all(lst)\n\t}\n}\n\n/*\n\tTo clearly indicate the allowed store actions,\n\tsupply a literal \"actions\" object on the \n\tconstructor prototype\n*/\nMassStore.prototype.actions = {\n\t// Type '{ app_refresh(this: MassStore, action?: {}): Promise<void>; tab_set(action: any): void; cohort_set(action: any): void; plot_prep(action: any): Promise<void>; ... 13 more ...; delete_group({ name }: { ...; }): void; }' is not assignable to type '(action: { [prop: string]: any; type: string; }) => void | Promise<void>'.\n\t// Object literal may only specify known properties, and 'app_refresh' does not exist in type '(action: { [prop: string]: any; type: string; }) => void | Promise<void>'.\n\n\tasync app_refresh(this: MassStore, action) {\n\t\t// optional action.state{} may be full or partial overrides\n\t\t// to the current state\n\t\t//\n\t\t// when constructing an app, app_refresh() is called\n\t\t// without action.state as the current state at the\n\t\t// initial render is not meant to be modified yet\n\t\t//\n\t\tthis.state = this.copyMerge(this.toJson(this.state), action.state || {})\n\n\t\t// Subactions cause existing action methods to be called in parallel,\n\t\t// to update unrelated parts of the state.\n\t\t//\n\t\t// Note that an alternative approach of pre-merging actions payloads into\n\t\t// one \"write\" step or action is not as reliable, since that approach may leave\n\t\t// out custom logic that are required and already coded in existing actions.\n\t\t//\n\t\tconst subactionPlotIds = new Set()\n\t\tconst promises: any[] = []\n\t\tif (action.subactions) {\n\t\t\tfor (const a of action.subactions) {\n\t\t\t\tpromises.push(this.actions[a.type].call(this, a))\n\t\t\t\tif (a.type.startsWith('plot_')) subactionPlotIds.add(a.id)\n\t\t\t}\n\t\t}\n\t\tawait Promise.all(promises)\n\n\t\tfor (const plot of this.state.plots) {\n\t\t\tconst mayAdjustConfig = this.plotAdjusters.get(plot)\n\t\t\tif (mayAdjustConfig && !subactionPlotIds.has(plot.id)) {\n\t\t\t\t// assume that mayAdjustConfig() is not async\n\t\t\t\tmayAdjustConfig(plot, action.config)\n\t\t\t}\n\t\t}\n\t},\n\ttab_set(this: MassStore, action) {\n\t\tthis.state.nav.activeTab = action.activeTab\n\t},\n\tcohort_set(this: MassStore, action) {\n\t\tthis.state.activeCohort = action.activeCohort\n\t\tconst cohort = this.state.termdbConfig.selectCohort.values[action.activeCohort]\n\t\tconst cohortFilter = getFilterItemByTag(this.state.termfilter.filter, 'cohortFilter')\n\t\tif (!cohortFilter) throw `No item tagged with 'cohortFilter'`\n\t\tcohortFilter.tvs.values = cohort.keys.map(key => {\n\t\t\treturn { key, label: key }\n\t\t})\n\t},\n\n\t// dispatch \"plot_prep\" action to produce a 'initiating' UI of this plot, for user to fill in additional details to launch the plot\n\t// example: table, scatterplot which requires user to select two terms\n\tasync plot_prep(this: MassStore, action) {\n\t\tif (usedPlotIds.has(action.id)) delete action.id // prevent potential conflicts\n\n\t\tconst plot = {\n\t\t\t// rx.getComponents() relies on parsing dot-separated key names that breaks if a key has a dot,\n\t\t\t// the plot.id value should be assumed to be auto-generated and to not have any non-rx usage expectations\n\t\t\tid: 'id' in action && !action.id.includes('.') ? action.id : getId()\n\t\t}\n\t\tusedPlotIds.add(plot.id)\n\t\tif (!action.config) throw '.config{} missing for plot_prep'\n\t\tif (action.config.chartType && Object.keys(action.config).length == 1) {\n\t\t\tconst _ = await importPlot(action.config.chartType)\n\t\t\tconst config = await _.getPlotConfig(action.config, this.app, this.state.activeCohort)\n\t\t\taction.config = Object.assign(config, action.config)\n\t\t}\n\t\tObject.assign(plot, action.config)\n\t\tthis.state.plots.push(plot)\n\t},\n\n\tasync plot_create(this: MassStore, action) {\n\t\tif (usedPlotIds.has(action.id)) delete action.id // prevent potential conflicts\n\n\t\tconst _ = await importPlot(action.config.chartType)\n\t\tconst plot = await _.getPlotConfig(action.config, this.app, this.state.activeCohort)\n\t\t// rx.getComponents() relies on parsing dot-separated key names that breaks if a key has a dot,\n\t\t// the plot.id value should be assumed to be auto-generated and to not have any non-rx usage expectations\n\t\tif (!('id' in action) || action.id.includes('.')) action.id = getId()\n\t\tplot.id = action.id\n\t\tusedPlotIds.add(plot.id)\n\n\t\tif (plot.mayAdjustConfig) {\n\t\t\tplot.mayAdjustConfig(plot)\n\t\t\tthis.plotAdjusters.set(plot, plot.mayAdjustConfig)\n\t\t\tdelete plot.mayAdjustConfig\n\t\t}\n\t\tthis.state.plots.push(plot)\n\t\t// Parent plots may have child plots, organized in sections to ease the visualization and analysis. For example the carereg report,\n\t\t//has the sections Demographics, Diagnosis and Stagind with their respective plots. We go over the plots for each section to add them\n\t\t// to the state.plots array, so that they can be treated as regular plots and be embedded in a parent plot\n\t\tif (plot.sections) {\n\t\t\t// this is handled for embedder convenience,\n\t\t\t// ideally app state.plots would already have all the plot entries\n\t\t\t// instead of having nested plot.sections[] with plots per section in a session state to be rehydrated;\n\t\t\t//\n\t\t\t// nested plot entries are harder to manage:\n\t\t\t// - store methods will need to look in different places\n\t\t\t//   to process a dispatched plot_* action\n\t\t\t// - a plot's `getState()` method will also need to look in different places for the plot config, such as\n\t\t\t// getState(appState) {\n\t\t\t//   const config = appState.plots.find(p => p.id === this.id || (p.id === this.parentId && p.plots?.find(p => p.id === this.id)))\n\t\t\t//    ...\n\t\t\t// }\n\t\t\tfor (const section of plot.sections) {\n\t\t\t\tfor (const p of section.plots) {\n\t\t\t\t\t// by tracking a child plot's parentId, it makes it easier to\n\t\t\t\t\t// - find a plot's config in the app state\n\t\t\t\t\t// - prevent the app from rendering each child plot in it's own sandbox\n\t\t\t\t\t// - prevent counting child plots separately in CHARTS tab\n\t\t\t\t\tp.parentId = plot.id\n\t\t\t\t\tif (!p.id) p.id = getId() // fill in missing child plot id\n\t\t\t\t\tconst _ = await importPlot(p.chartType)\n\t\t\t\t\tconst config = await _.getPlotConfig(p, this.app, this.state.activeCohort)\n\t\t\t\t\t// Move nested state.plot[i].plots[] into the root state.plots[] array\n\t\t\t\t\tthis.state.plots.push(config)\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t},\n\n\tplot_edit(this: MassStore, action) {\n\t\tconst plot = this.state.plots.find(p => p.id === action.id)\n\t\tif (!plot) {\n\t\t\t// plot may have been deleted from closing the plot sandbox or another reason,\n\t\t\t// assume this action is stale and not an error\n\t\t\tthrow new CustomError(`missing plot config for id='${action.id}' in store.plot_edit()`, {\n\t\t\t\tname: 'MISSING_PLOT_CONFIG',\n\t\t\t\tlevel: 'warn'\n\t\t\t})\n\t\t}\n\t\tthis.copyMerge(plot, action.config, action.opts ? action.opts : {})\n\t\tconst mayAdjustConfig = this.plotAdjusters.get(plot)\n\t\tif (mayAdjustConfig) mayAdjustConfig(plot, action.config)\n\n\t\tif (action.config && 'cutoff' in action.config) {\n\t\t\tplot.cutoff = action.config.cutoff\n\t\t} else {\n\t\t\tdelete plot.cutoff\n\t\t}\n\n\t\t// action.parentId may be used in reactsTo() code\n\t\tif (!action.parentId && plot.parentId) action.parentId = plot.parentId\n\t},\n\n\tplot_delete(this: MassStore, action) {\n\t\tconst i = this.state.plots.findIndex(p => p.id === action.id)\n\t\tif (i !== -1) {\n\t\t\tthis.state.plots.splice(i, 1)\n\t\t\t// action.parentId may be used in reactsTo() code\n\t\t\tconst plot = this.state.plots[i]\n\t\t\tif (!action.parentId && plot?.parentId) action.parentId = plot.parentId\n\t\t}\n\t},\n\n\tplot_nestedEdits(this: MassStore, action) {\n\t\tconst plot = this.state.plots.find(p => p.id === action.id)\n\t\tif (!plot) {\n\t\t\t// plot may have been deleted from closing the plot sandbox or another reason,\n\t\t\t// assume this action is stale and not an error\n\t\t\tthrow new CustomError(`missing plot config for id='${action.id}' in store.plot_edit_nested`, {\n\t\t\t\tname: 'MISSING_PLOT_CONFIG',\n\t\t\t\tlevel: 'warn'\n\t\t\t})\n\t\t}\n\t\tfor (const edit of action.edits) {\n\t\t\tconst lastKey = edit.nestedKeys.pop()\n\t\t\tconst obj = edit.nestedKeys.reduce((obj, key) => obj[key], plot)\n\t\t\tobj[lastKey] = edit.value\n\t\t}\n\t\t// action.parentId may be used in reactsTo() code\n\t\tif (!action.parentId && plot.parentId) action.parentId = plot.parentId\n\t},\n\n\t// TODO: delete this action? does not seem to be used\n\tasync plot_splice(this: MassStore, action) {\n\t\tfor (const a of action.subactions) {\n\t\t\t// need to await in case the sequence of subactions is relevant\n\t\t\tawait this.actions[a.type].call(this, a)\n\t\t}\n\t},\n\n\tfilter_replace(this: MassStore, action) {\n\t\tif ('filter0' in action) {\n\t\t\t// quick fix since rx.copyMerge() does not work for filter0,\n\t\t\t// as used in app_refresh() and dispatched from GDC matrixApi.update()\n\t\t\tthis.state.termfilter.filter0 = action.filter0\n\t\t\treturn\n\t\t}\n\n\t\tconst replacementFilter = action.filter ? action.filter : { type: 'tvslst', join: '', in: 1, lst: [] }\n\t\tif (!action.filter.tag) {\n\t\t\tthis.state.termfilter.filter = replacementFilter\n\t\t} else {\n\t\t\tconst filter = getFilterItemByTag(this.state.termfilter.filter, action.filter.tag)\n\t\t\tif (!filter) throw `cannot replace missing filter with tag '${action.filter.tag}'`\n\t\t\tconst parent = findParent(this.state.termfilter.filter, filter.$id)\n\t\t\tif (parent == filter) {\n\t\t\t\tthis.state.termfilter.filter = replacementFilter\n\t\t\t} else {\n\t\t\t\tconst i = parent.lst.indexOf(filter)\n\t\t\t\tparent.lst[i] = replacementFilter\n\t\t\t}\n\t\t}\n\t\t//In the profile runproteinpaint this function is passed to clear the local filters when the global filter changes\n\t\tif (this.app.opts.app?.onFilterChange) this.app.opts.app.onFilterChange(this.state.plots)\n\t},\n\n\tcache_termq(this: MassStore, { termId, q }) {\n\t\t// TODO: support caching by term.name\n\t\tif (!termId) throw `missing termId for caching custom term.q`\n\t\tif (!q?.reuseId) throw `missing or empty tw.q.reuseId as cache identifier for term='${termId}'`\n\t\tconst cache = this.state.reuse.customTermQ.byId\n\t\tif (!cache[termId]) cache[termId] = {}\n\t\tcache[termId][q.reuseId] = q\n\n\t\t// apply this change to all plots that use the same term.q cache\n\t\tfor (const plot of this.state.plots) {\n\t\t\tif (!(plot.chartType in getTwsByChartType)) continue\n\t\t\tconst twlst = getTwsByChartType[plot.chartType](plot)\n\t\t\tfor (const tw of twlst) {\n\t\t\t\tif (tw?.q?.reuseId === q.reuseId) tw.q = q\n\t\t\t}\n\t\t}\n\t},\n\n\tuncache_termq(this: MassStore, { term, q }) {\n\t\t// TODO: support uncaching by term.name\n\t\tif (!term.id) throw `missing term.id for uncaching custom term.q`\n\t\tif (!q.reuseId) throw `missing qname as uncache identifier for term.id='${term.id}'`\n\t\tconst cache = this.state.reuse.customTermQ.byId[term.id]\n\t\tif (!cache) throw `missing term.q cache for term.id='${term.id}`\n\t\tif (!(q.reuseId in cache)) console.warn(`q.reuseId='${q.cacheid}' not cached for term.id='${term.id}'`)\n\t\telse {\n\t\t\tdelete cache[q.reuseId]\n\t\t\t// apply this change to all plots that use the same term.q cache\n\t\t\tfor (const plot of this.state.plots) {\n\t\t\t\tif (!(plot.chartType in getTwsByChartType)) continue\n\t\t\t\tconst twlst = getTwsByChartType[plot.chartType](plot)\n\t\t\t\tfor (const tw of twlst) {\n\t\t\t\t\tif (tw.q.reuseId === q.reuseId) {\n\t\t\t\t\t\tdelete tw.q.reuseId\n\t\t\t\t\t\tdelete tw.q.name\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t},\n\n\tadd_customTerm(this: MassStore, action) {\n\t\tconst i = action.obj.id ? this.state.customTerms.findIndex(term => term.id === action.obj.id) : -1\n\t\tif (i === -1) this.state.customTerms.push(action.obj)\n\t\telse this.state.customTerms[i] = action.obj\n\t},\n\n\tdelete_customTerm(this: MassStore, { id, name }) {\n\t\tconst i = this.state.customTerms.findIndex(term => (id ? term.id === id : term.name == name))\n\t\tif (i != -1) this.state.customTerms.splice(i, 1)\n\t},\n\n\tadd_group(this: MassStore, action) {\n\t\tif (this.state.nav.header_mode != 'hidden') {\n\t\t\tconst group = action.obj\n\t\t\tconst name = `Group ${this.state.groups.length + 1}`\n\n\t\t\tconst samplelstTW = getSamplelstTW([group])\n\t\t\tconst appGroup = {\n\t\t\t\tname: name,\n\t\t\t\tfilter: getFilter(samplelstTW),\n\t\t\t\tplotId: group.plotId\n\t\t\t}\n\t\t\tthis.state.groups.push(appGroup)\n\t\t\tthis.state.nav.activeTab = 1\n\t\t} else if ('plotId' in action.obj) {\n\t\t\tconst plot = this.state.plots.find(p => p.id == action.obj.plotId)\n\t\t\tif (plot.groups) {\n\t\t\t\taction.obj.index = plot.groups.length\n\t\t\t\taction.obj.name = `Group ${plot.groups.length + 1}`\n\t\t\t\tplot.groups.push(action.obj)\n\t\t\t}\n\t\t}\n\t},\n\n\trename_group(this: MassStore, action) {\n\t\tconst index = action.index\n\t\tconst newName = action.newName\n\t\tif (this.state.nav.header_mode != 'hidden') {\n\t\t\tthis.state.groups[index].name = newName\n\t\t} else {\n\t\t\tfor (const plot of this.state.plots) {\n\t\t\t\tif (plot?.groups) {\n\t\t\t\t\tplot.groups[index].name = newName\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t},\n\n\tchange_color_group(this: MassStore, action) {\n\t\tconst index = action.index\n\t\tconst newColor = action.newColor\n\t\tif (this.state.nav.header_mode != 'hidden') {\n\t\t\tthis.state.groups[index].color = newColor\n\t\t} else {\n\t\t\tfor (const plot of this.state.plots) {\n\t\t\t\tif (plot?.groups) {\n\t\t\t\t\tplot.groups[index].color = newColor\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t},\n\n\tdelete_group(this: MassStore, { name }) {\n\t\tif (this.state.nav.header_mode != 'hidden') {\n\t\t\tconst i = this.state.groups.findIndex(i => i.name == name)\n\t\t\tif (i != -1) this.state.groups.splice(i, 1)\n\t\t} else {\n\t\t\tfor (const plot of this.state.plots) {\n\t\t\t\tif (plot?.groups) {\n\t\t\t\t\tconst j = plot.groups.findIndex(j => j.name == name)\n\t\t\t\t\tif (j != -1) plot.groups.splice(j, 1)\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n}\n\n// each chartType should have a getter function\n// to return all the term wrappers in the plot config\nconst getNestedChartSeriesDataTws = plot => [plot.term0, plot.term, plot.term2].filter(d => !!d)\nconst getTwsByChartType = {\n\tsummary: getNestedChartSeriesDataTws,\n\tsurvival: getNestedChartSeriesDataTws,\n\tcuminc: getNestedChartSeriesDataTws,\n\tregression: plot => [plot.outcome, ...plot.independent].filter(d => !!d),\n\tmatrix: plot =>\n\t\tplot.termgroups.reduce((arr, grp) => {\n\t\t\tarr.push(...grp.lst)\n\t\t\treturn arr\n\t\t}, [])\n}\n\n// must use the await keyword when using this storeInit()\nexport const storeInit = StoreApi.getInitFxn(MassStore)\n", "/*\nDecides whether AppApi.dispatch() should skip aborting the requests that were signaled by\npreviously dispatched actions. See the RxApp.skipPrevActionAbort declaration in rx/src/AppApi.ts.\n\nReturning true keeps the app-level AbortController intact, so that plots and control menus can\ncontinue rendering while another plot is being created, edited or deleted. Returning false aborts\nit, which is reserved for actions that are assumed to affect every component.\n\nShared by MassApp and PlotApp, which dispatch the same action types.\n*/\n\n/** state keys that, when replaced, affect every component the same way a filter or cohort change does */\nconst globalStateKeys = ['termfilter', 'activeCohort', 'plots']\n\nconst isGlobalActionType = (type: string) => type.startsWith('filter') || type.startsWith('cohort')\n\nexport function skipPrevActionAbort(action?: { type: string; [key: string]: any }): boolean {\n\t// a dispatch without an action re-renders everything\n\tif (!action) return false\n\tif (isGlobalActionType(action.type)) return false\n\tif (action.type == 'app_refresh') {\n\t\t// an app_refresh may carry subactions, a state patch, or both, and either one may affect\n\t\t// all components, so they must be checked independently. For example\n\t\t// regression.inputs.values.table.js dispatches a termfilter patch alongside a plot_edit.\n\t\tif (action.subactions?.find(a => isGlobalActionType(a.type))) return false\n\t\t// a state patch may replace the app state wholesale, such as when recovering a saved\n\t\t// session. Like a filter or cohort change, that affects every component, so pending\n\t\t// requests must not be allowed to render. A partial patch, such as {groups}, does not.\n\t\tif (action.state) return !globalStateKeys.find(key => key in action.state)\n\t\t// an app_refresh with neither is dispatched to re-render everything, such as after a login\n\t\treturn Boolean(action.subactions)\n\t}\n\treturn true\n}\n"],
+  "mappings": 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