@sjcrh/proteinpaint-client 2.201.0 → 2.202.0

package/dist/RunChart2-YEAOBR2L.js

@@ -0,0 +1,758 @@
+import {
+  DownloadMenu,
+  PlotBase,
+  axisstyle,
+  controlsInit,
+  fillTermWrapper,
+  getCombinedTermFilter,
+  getNormalRoot,
+  getT0T2defaultQ,
+  select2Terms,
+  table2col
+} from "./chunk-73PFJ2VF.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-XFAL46LZ.js";
+import "./chunk-ZZMIDYRE.js";
+import {
+  Menu
+} from "./chunk-HYOEWQ5P.js";
+import "./chunk-6QCYT6G2.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-VSSZJHOR.js";
+import "./chunk-5RUVBYLK.js";
+import "./chunk-ZFJUVP2N.js";
+import "./chunk-R3ARQMM4.js";
+import {
+  dofetch3
+} from "./chunk-X4QQRHFB.js";
+import "./chunk-4WF3XDQP.js";
+import "./chunk-X6VTVZY7.js";
+import {
+  copyMerge,
+  getCompInit
+} from "./chunk-H6INPPUC.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-L44P5N4U.js";
+import {
+  getColors
+} from "./chunk-GEQUQ3GG.js";
+import "./chunk-WPHUM5S5.js";
+import "./chunk-75T7ESEO.js";
+import {
+  line_default
+} from "./chunk-2KXLYFAO.js";
+import {
+  axisBottom,
+  axisLeft
+} from "./chunk-LOZEKOES.js";
+import "./chunk-VQZ2Z5YU.js";
+import {
+  linear
+} from "./chunk-UJELJXJG.js";
+import "./chunk-FXQXCOII.js";
+import {
+  roundValueAuto
+} from "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import {
+  rgb
+} from "./chunk-Q5RDQNIT.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-HFNDKYVF.js";
+
+// plots/runChart2/defaults.ts
+function getDefaultRunChart2Settings(overrides = {}) {
+  const defaults = {
+    aggregation: "median",
+    showCumulativeFrequency: true,
+    svgw: 1e3,
+    svgh: 500,
+    color: "#ce768e",
+    opacity: 0.6,
+    minXScale: null,
+    maxXScale: null,
+    minYScale: null,
+    maxYScale: null
+  };
+  return Object.assign(defaults, overrides);
+}
+
+// plots/runChart2/RunChart2Controls.ts
+function getMinMaxInputs(range, runChart2) {
+  const fallback = { xMin: 0, xMax: 1, yMin: 0, yMax: 1 };
+  const valid = [range.xMin, range.xMax, range.yMin, range.yMax].every((n) => Number.isFinite(n)) && range.xMin < range.xMax && range.yMin < range.yMax;
+  const r = valid ? range : fallback;
+  const xMin = roundValueAuto(r.xMin);
+  const xMax = roundValueAuto(r.xMax);
+  const xStep = (xMax - xMin) / 10 || 0.1;
+  const yMin = roundValueAuto(r.yMin);
+  const yMax = roundValueAuto(r.yMax);
+  const yStep = (yMax - yMin) / 10 || 0.1;
+  return [
+    {
+      label: "X axis minimum",
+      type: "number",
+      chartType: "runChart2",
+      settingsKey: "minXScale",
+      title: `Set the minimum X axis value between ${xMin} and ${xMax}`,
+      placeholder: `${xMin}`,
+      min: xMin,
+      max: xMax,
+      step: xStep
+    },
+    {
+      label: "X axis maximum",
+      type: "number",
+      chartType: "runChart2",
+      settingsKey: "maxXScale",
+      title: `Set the maximum X axis value between ${xMin} and ${xMax}`,
+      placeholder: `${xMax}`,
+      min: xMin,
+      max: xMax,
+      step: xStep,
+      ...runChart2 && {
+        processInput: (value) => {
+          const sel = runChart2.dom.controls.selectAll("input").filter(function() {
+            return this.placeholder === `${xMax}`;
+          });
+          if (!sel.node()?.value) return xMax;
+          return value;
+        }
+      }
+    },
+    {
+      label: "Y axis minimum",
+      type: "number",
+      chartType: "runChart2",
+      settingsKey: "minYScale",
+      title: `Set the minimum Y axis value between ${yMin} and ${yMax}`,
+      placeholder: `${yMin}`,
+      min: yMin,
+      max: yMax,
+      step: yStep
+    },
+    {
+      label: "Y axis maximum",
+      type: "number",
+      chartType: "runChart2",
+      settingsKey: "maxYScale",
+      title: `Set the maximum Y axis value between ${yMin} and ${yMax}`,
+      placeholder: `${yMax}`,
+      min: yMin,
+      max: yMax,
+      step: yStep,
+      ...runChart2 && {
+        processInput: (value) => {
+          const sel = runChart2.dom.controls.selectAll("input").filter(function() {
+            return this.placeholder === `${yMax}`;
+          });
+          if (!sel.node()?.value) return yMax;
+          return value;
+        }
+      }
+    }
+  ];
+}
+function getBaseInputs(app) {
+  return [
+    {
+      type: "term",
+      configKey: "xtw",
+      chartType: "runChart2",
+      usecase: { target: "runChart2", detail: "numeric" },
+      label: "X",
+      vocabApi: app.vocabApi,
+      menuOptions: "edit",
+      numericEditMenuVersion: ["continuous", "discrete"]
+    },
+    {
+      type: "term",
+      configKey: "ytw",
+      chartType: "runChart2",
+      usecase: { target: "runChart2", detail: "numeric" },
+      label: "Y",
+      vocabApi: app.vocabApi,
+      menuOptions: "{replace,remove}",
+      defaultQ4fillTW: getT0T2defaultQ(),
+      numericEditMenuVersion: ["continuous"]
+    },
+    {
+      label: "Aggregation",
+      type: "dropdown",
+      chartType: "runChart2",
+      settingsKey: "aggregation",
+      options: [{ label: "Median", value: "median" }],
+      getDisplayStyle: (plot) => plot?.ytw != null ? "table-row" : "none"
+    },
+    {
+      label: "Show cumulative frequency",
+      boxLabel: "",
+      type: "checkbox",
+      chartType: "runChart2",
+      settingsKey: "showCumulativeFrequency",
+      title: "Show the cumulative number of events over time",
+      getDisplayStyle: (plot) => plot?.ytw == null ? "table-row" : "none"
+    },
+    {
+      label: "Plot height",
+      title: "Set the plot height in pixels, >=200",
+      type: "number",
+      chartType: "runChart2",
+      settingsKey: "svgh",
+      debounceInterval: 500,
+      min: 200,
+      step: 25
+    },
+    {
+      label: "Plot width",
+      title: "Set the plot width in pixels, >=200",
+      type: "number",
+      chartType: "runChart2",
+      settingsKey: "svgw",
+      debounceInterval: 500,
+      min: 200,
+      step: 25
+    },
+    {
+      label: "Default color",
+      type: "color",
+      chartType: "runChart2",
+      settingsKey: "color"
+    }
+  ];
+}
+function getRunChart2Controls(app, range, runChart2) {
+  const inputs = getBaseInputs(app);
+  if (range) {
+    inputs.push(...getMinMaxInputs(range, runChart2));
+  }
+  return inputs;
+}
+
+// plots/runChart2/model/RunChart2Model.ts
+var RunChart2Model = class {
+  constructor(runChart2) {
+    this.charts = [];
+    this.chartData = null;
+    this.runChart2 = runChart2;
+  }
+  async fetchData(config) {
+    const result = await dofetch3("termdb/runChart", { body: this.getRequestOpts(config) });
+    if (!("status" in result) || result.status !== "ok") {
+      throw new Error(`RunChart2Model.fetchData() failed: ${result.error}`);
+    }
+    return result.series;
+  }
+  getRequestOpts(config) {
+    const state = this.runChart2.state;
+    return {
+      genome: state.vocab.genome,
+      dslabel: state.vocab.dslabel,
+      filter: getNormalRoot(state.termfilter?.filter),
+      xtw: config.xtw,
+      ytw: config.ytw,
+      aggregation: config.settings?.runChart2?.aggregation,
+      showCumulativeFrequency: config.settings?.runChart2?.showCumulativeFrequency
+    };
+  }
+};
+
+// plots/runChart2/viewModel/ViewModel.ts
+var RunChart2ViewModel = class {
+  constructor(settings) {
+    this.#horizPad = 70;
+    this.#vertPad = 40;
+    this.#bottomLabelPad = 72;
+    this.#leftLabelPad = 50;
+    this.#xAxisLabelOffset = 50;
+    this.#yAxisLabelX = 55;
+    this.xMin = Infinity;
+    this.xMax = -Infinity;
+    this.yMin = Infinity;
+    this.yMax = -Infinity;
+    this.settings = settings;
+  }
+  #horizPad;
+  #vertPad;
+  #bottomLabelPad;
+  #leftLabelPad;
+  #xAxisLabelOffset;
+  #yAxisLabelX;
+  /** Increase the domain slightly so all data points fit within the plot. */
+  setDomain(min, max, percent = 0.1) {
+    const rangeInc = (max - min) * percent || 0.1;
+    return [min - rangeInc, max + rangeInc];
+  }
+  map(data) {
+    let totalSampleCount = 0;
+    for (const series of data) {
+      if (!series.points || series.points.length === 0) continue;
+      for (const point of series.points) {
+        this.xMin = Math.min(point.x, this.xMin);
+        this.xMax = Math.max(point.x, this.xMax);
+        this.yMin = Math.min(point.y, this.yMin);
+        this.yMax = Math.max(point.y, this.yMax);
+        totalSampleCount += point.sampleCount ?? 0;
+      }
+    }
+    const hasValidRange = Number.isFinite(this.xMin) && Number.isFinite(this.xMax) && this.xMin < this.xMax && Number.isFinite(this.yMin) && Number.isFinite(this.yMax) && this.yMin < this.yMax;
+    let xMinForDomain, xMaxForDomain, yMinForDomain, yMaxForDomain;
+    if (hasValidRange) {
+      const usePaddingX = this.settings.minXScale == null && this.settings.maxXScale == null;
+      const xPadded = usePaddingX ? this.setDomain(this.xMin, this.xMax, 0.02) : null;
+      xMinForDomain = this.settings.minXScale ?? (xPadded ? xPadded[0] : this.xMin);
+      xMaxForDomain = this.settings.maxXScale ?? (xPadded ? xPadded[1] : this.xMax);
+      const usePaddingY = this.settings.minYScale == null && this.settings.maxYScale == null;
+      const yPadded = usePaddingY ? this.setDomain(this.yMin, this.yMax, 0.1) : null;
+      yMinForDomain = this.settings.minYScale ?? (yPadded ? yPadded[0] : this.yMin);
+      yMaxForDomain = this.settings.maxYScale ?? (yPadded ? yPadded[1] : this.yMax);
+    } else {
+      xMinForDomain = 0;
+      xMaxForDomain = 1;
+      yMinForDomain = 0;
+      yMaxForDomain = 1;
+    }
+    return {
+      series: data,
+      totalSampleCount: totalSampleCount > 0 ? totalSampleCount : void 0,
+      plotDims: this.getPlotDimensions({
+        xMin: xMinForDomain,
+        xMax: xMaxForDomain,
+        yMin: yMinForDomain,
+        yMax: yMaxForDomain
+      })
+    };
+  }
+  getPlotDimensions(domains) {
+    const { xMin, xMax, yMin, yMax } = domains;
+    return {
+      svg: {
+        height: this.settings.svgh + this.#vertPad + this.#bottomLabelPad,
+        width: this.settings.svgw + this.#horizPad + this.#leftLabelPad
+      },
+      xAxis: {
+        scale: linear().domain([xMin, xMax]).range([0, this.settings.svgw]),
+        x: this.#horizPad + this.#leftLabelPad,
+        y: this.settings.svgh + this.#vertPad,
+        labelOffset: this.#xAxisLabelOffset
+      },
+      yAxis: {
+        // range [svgh, 0]: y grows bottom-to-top
+        scale: linear().domain([yMin, yMax]).range([this.settings.svgh, 0]),
+        x: this.#horizPad + this.#leftLabelPad,
+        y: this.#vertPad,
+        labelX: this.#yAxisLabelX
+      }
+    };
+  }
+};
+
+// plots/runChart2/Settings.ts
+function getFrequencyCountLabel(showCumulative) {
+  return showCumulative ? "Cumulative count" : "Count";
+}
+
+// plots/runChart2/view/SeriesRender.ts
+function getCoordinate(val, min, max) {
+  if (min != null && val < min) return min;
+  if (max != null && val > max) return max;
+  return val;
+}
+function isFrequencyMode(config) {
+  return config?.ytw == null;
+}
+function isCumulativeFrequencyMode(config) {
+  return isFrequencyMode(config) && config?.settings?.runChart2?.showCumulativeFrequency === true;
+}
+function shouldDrawMedianLine(config, series) {
+  return !isCumulativeFrequencyMode(config) && series?.median != null && !isNaN(series.median);
+}
+var SeriesRender = class {
+  constructor(series, plotDims, settings, seriesGroup, runChart2, seriesColor) {
+    this.series = series;
+    this.plotDims = plotDims;
+    this.settings = settings;
+    this.seriesGroup = seriesGroup;
+    this.runChart2 = runChart2;
+    this.seriesColor = seriesColor;
+    this.render();
+  }
+  getCoordinates(d) {
+    const cx = getCoordinate(d.x, this.settings.minXScale, this.settings.maxXScale);
+    const cy = getCoordinate(d.y, this.settings.minYScale, this.settings.maxYScale);
+    return {
+      x: this.plotDims.xAxis.scale(cx),
+      y: this.plotDims.yAxis.scale(cy)
+    };
+  }
+  render() {
+    if (!this.series.points || this.series.points.length === 0) return;
+    const cfg = this.runChart2?.state?.config;
+    const color = this.seriesColor ?? this.settings.color ?? "#1f77b4";
+    const medianColor = rgb(color).darker(2);
+    const sortedPoints = [...this.series.points].sort((a, b) => a.x - b.x);
+    const lineBuilder = line_default().x((d) => this.getCoordinates(d).x).y((d) => this.getCoordinates(d).y);
+    const opacity = this.settings.opacity ?? 0.6;
+    const seriesG = this.seriesGroup.append("g").attr("data-testid", "sjpp-runChart2-series").attr("data-series-id", this.series.seriesId ?? "");
+    if (shouldDrawMedianLine(cfg, this.series)) {
+      const yMedian = this.plotDims.yAxis.scale(
+        getCoordinate(this.series.median, this.settings.minYScale, this.settings.maxYScale)
+      );
+      const xStart = this.getCoordinates(sortedPoints[0]).x;
+      const xEnd = this.getCoordinates(sortedPoints[sortedPoints.length - 1]).x;
+      const medianG = seriesG.append("g").attr("data-testid", "sjpp-runChart2-median-bg");
+      medianG.append("line").attr("x1", xStart).attr("y1", yMedian).attr("x2", xEnd).attr("y2", yMedian).attr("stroke", medianColor.toString()).attr("stroke-width", 1).attr("opacity", 0.5);
+      medianG.append("text").attr("x", xEnd - 10).attr("y", yMedian - 5).attr("text-anchor", "end").attr("font-size", "12px").attr("fill", medianColor.toString()).attr("pointer-events", "none").text(`M=${roundValueAuto(this.series.median, true, 1)}`);
+    }
+    seriesG.append("path").datum(sortedPoints).attr("fill", "none").attr("stroke", color).attr("stroke-width", 1).attr("stroke-linejoin", "round").attr("opacity", opacity).attr("d", lineBuilder);
+    seriesG.selectAll("circle").data(sortedPoints).enter().append("circle").attr("cx", (d) => this.getCoordinates(d).x).attr("cy", (d) => this.getCoordinates(d).y).attr("r", 2.5).attr("fill", color).attr("stroke", "#fff").attr("stroke-width", 1).style("cursor", "pointer").on("mouseover", (event, d) => this.showHoverTip(event, d)).on("mouseout", () => this.hideHoverTip());
+  }
+  showHoverTip(event, d) {
+    const tip = this.runChart2?.dom?.hovertip;
+    if (!tip) return;
+    const cfg = this.runChart2?.state?.config;
+    tip.clear();
+    const table = table2col({ holder: tip.d.append("div") });
+    if (this.series.seriesId) table.addRow("Period", this.series.seriesId);
+    const xTermName = cfg?.xtw?.term?.name ?? "X";
+    table.addRow(xTermName, d.xName ?? String(d.x));
+    if (isFrequencyMode(cfg)) {
+      table.addRow(getFrequencyCountLabel(cfg?.settings?.runChart2?.showCumulativeFrequency), String(d.y ?? ""));
+      if (d.sampleCount != null && d.sampleCount !== d.y) {
+        table.addRow("Sample Count", String(d.sampleCount));
+      }
+    } else {
+      table.addRow(cfg?.ytw?.term?.name ?? "Y", roundValueAuto(d.y, true, 2));
+      table.addRow("Sample Count", String(d.sampleCount ?? ""));
+    }
+    tip.show(event.clientX, event.clientY);
+  }
+  hideHoverTip() {
+    this.runChart2?.dom?.hovertip?.hide();
+  }
+  // Click menu disabled until menu options have real actions (currently only close the menu)
+  // showPointMenu(event: any, point: any) {
+  // 	if (!this.runChart2 || !this.runChart2.dom.clickMenu) return
+  // 	this.hideHoverTip()
+  // 	const cfg = this.runChart2.state?.config
+  // 	const xTermName = cfg?.term?.term?.name ?? 'X'
+  // 	const yTermName = cfg?.term2?.term?.name ?? 'Y'
+  // 	const menu = this.runChart2.dom.clickMenu
+  // 	menu.clear()
+  // 	const menuDiv = menu.d.append('div').attr('class', 'sja_menu_div')
+  // 	const options = [
+  // 		{ label: `${xTermName}: ${point.xName ?? point.x}`, callback: () => menu.hide() },
+  // 		{ label: `${yTermName}: ${roundValueAuto(point.y, true, 2)}`, callback: () => menu.hide() },
+  // 		{ label: `Sample Count: ${point.sampleCount}`, callback: () => menu.hide() }
+  // 	]
+  // 	menuDiv
+  // 		.selectAll('div')
+  // 		.data(options)
+  // 		.enter()
+  // 		.append('div')
+  // 		.attr('class', 'sja_menuoption sja_sharp_border')
+  // 		.text(d => d.label)
+  // 		.style('cursor', 'pointer')
+  // 		.on('click', (event: any, d: any) => { d.callback() })
+  // 	menu.show(event.clientX, event.clientY)
+  // }
+};
+
+// plots/runChart2/view/View.ts
+var RunChart2View = class {
+  constructor(viewData, settings, holder, config, runChart2) {
+    this.viewData = viewData;
+    this.settings = settings;
+    this.config = config;
+    this.runChart2 = runChart2;
+    const svg = holder.append("svg").attr("data-testid", "sjpp-runChart2-svg");
+    this.chartDom = {
+      svg,
+      xAxis: svg.append("g").attr("data-testid", "sjpp-runChart2-xAxis"),
+      yAxis: svg.append("g").attr("data-testid", "sjpp-runChart2-yAxis")
+    };
+    this.render();
+  }
+  render() {
+    const plotDims = this.viewData.plotDims;
+    this.chartDom.svg.selectAll("*").remove();
+    this.chartDom.xAxis = this.chartDom.svg.append("g").attr("data-testid", "sjpp-runChart2-xAxis");
+    this.chartDom.yAxis = this.chartDom.svg.append("g").attr("data-testid", "sjpp-runChart2-yAxis");
+    this.chartDom.svg.transition().attr("width", plotDims.svg.width).attr("height", plotDims.svg.height);
+    this.renderScale(plotDims.xAxis);
+    this.renderScale(plotDims.yAxis, true);
+    const seriesGroup = this.chartDom.svg.append("g").attr("data-testid", "sjpp-runChart2-seriesGroup").attr("transform", `translate(${plotDims.xAxis.x}, ${plotDims.yAxis.y})`);
+    const seriesList = this.viewData.series || [];
+    const cat2Color = seriesList.length > 1 ? getColors(seriesList.length) : null;
+    for (let i = 0; i < seriesList.length; i++) {
+      const series = seriesList[i];
+      const seriesColor = cat2Color ? cat2Color(series.seriesId ?? String(i)) : void 0;
+      new SeriesRender(series, plotDims, this.settings, seriesGroup, this.runChart2, seriesColor);
+    }
+    this.renderAxisLabels(plotDims);
+  }
+  renderAxisLabels(plotDims) {
+    const xName = this.config?.xtw?.term?.name || "X Axis";
+    const xLabel = this.viewData.totalSampleCount != null && this.config?.xtw?.q?.mode !== "discrete" ? `${xName}, n=${this.viewData.totalSampleCount.toLocaleString()}` : xName;
+    const yLabel = this.config?.ytw?.term?.name ?? getFrequencyCountLabel(this.settings?.showCumulativeFrequency);
+    const xAxisLabelY = plotDims.xAxis.y + (plotDims.xAxis.labelOffset ?? 50);
+    this.chartDom.svg.append("text").attr("data-testid", "sjpp-runChart2-xAxisLabel").attr("transform", `translate(${plotDims.xAxis.x + this.settings.svgw / 2}, ${xAxisLabelY})`).attr("text-anchor", "middle").style("font-size", "0.9em").text(xLabel);
+    const seriesList = this.viewData.series || [];
+    if (seriesList.length > 0 && this.config?.xtw?.q?.mode === "discrete") {
+      const firstSeries = seriesList[0];
+      const firstSeriesId = firstSeries?.seriesId;
+      if (firstSeriesId != null) {
+        const periodN = firstSeries?.points?.reduce((sum, p) => sum + (Number(p.sampleCount) || 0), 0) ?? 0;
+        const labelText = periodN > 0 ? `${String(firstSeriesId)}, n=${periodN.toLocaleString()}` : String(firstSeriesId);
+        this.chartDom.svg.append("text").attr("data-testid", "sjpp-runChart2-xAxisSeriesIds").attr("transform", `translate(${plotDims.xAxis.x + this.settings.svgw / 2}, ${xAxisLabelY + 20})`).attr("text-anchor", "middle").style("font-size", "0.9em").style("opacity", 1).text(labelText);
+      }
+    }
+    const yAxisLabelX = plotDims.yAxis.labelX ?? 55;
+    this.chartDom.svg.append("text").attr("data-testid", "sjpp-runChart2-yAxisLabel").attr("transform", `translate(${yAxisLabelX}, ${plotDims.yAxis.y + this.settings.svgh / 2}) rotate(-90)`).attr("text-anchor", "middle").style("font-size", "0.9em").text(yLabel);
+  }
+  renderScale(scale, isLeft = false) {
+    const axisGroup = this.chartDom[isLeft ? "yAxis" : "xAxis"];
+    const scaleG = axisGroup.append("g").attr("transform", `translate(${scale.x}, ${scale.y})`);
+    if (isLeft) {
+      scaleG.call(axisLeft(scale.scale));
+    } else {
+      const allPoints = [];
+      for (const series of this.viewData.series || []) {
+        if (series.points) allPoints.push(...series.points);
+      }
+      const yearTickValues = [...new Set(allPoints.map((p) => Math.floor(p.x)))].sort((a, b) => a - b);
+      const xAxis = axisBottom(scale.scale).tickFormat((d) => String(Math.floor(Number(d))));
+      if (yearTickValues.length > 0) xAxis.tickValues(yearTickValues);
+      else xAxis.ticks(6);
+      scaleG.call(xAxis);
+      scaleG.selectAll("text").style("text-anchor", "middle").style("font-size", "12px");
+    }
+    axisstyle({
+      axis: scaleG,
+      color: "black",
+      showline: true
+    });
+  }
+};
+
+// plots/runChart2/RunChart2.ts
+var RunChart2 = class _RunChart2 extends PlotBase {
+  constructor(opts, api) {
+    super(opts, api);
+    this.configTermKeys = ["xtw", "ytw"];
+    this.opts = opts;
+    this.api = api;
+    this.type = _RunChart2.type;
+    if (this.opts.parentId) this.parentId = this.opts.parentId;
+    this.components = {
+      controls: {}
+    };
+    const leftDiv = opts.holder.insert("div").style("display", "inline-block");
+    const controlsHolder = leftDiv.append("div").style("display", "inline-block");
+    const chartHolder = opts.holder.append("div").attr("data-testid", "sjpp-runChart2-chartHolder").style("display", "inline-block").style("vertical-align", "top");
+    this.dom = {
+      controls: controlsHolder,
+      chartHolder,
+      error: chartHolder.append("div").attr("data-testid", "sjpp-runChart2-error"),
+      hovertip: new Menu({ padding: "3px" })
+    };
+    if (opts.header) {
+      this.dom.headerLabel = opts.header.append("span").attr("class", "sja_runChart2_header").attr("data-testid", "sjpp-runChart2-header").style("font-size", "0.8em").style("opacity", 0.7).text("RUN CHART");
+    }
+  }
+  static {
+    this.type = "runChart2";
+  }
+  reactsTo(action) {
+    if (action.type.includes("cache_termq")) return true;
+    if (action.type.startsWith("filter")) return true;
+    if (action.type.startsWith("cohort")) return true;
+    if (action.type == "app_refresh") return true;
+    if (action.type.startsWith("plot_")) {
+      return (action.id === this.id || action.id == this.parentId) && (!action.config?.childType || action.config?.childType == this.type);
+    }
+  }
+  getState(appState) {
+    const config = appState.plots.find((p) => p.id === this.id);
+    if (!config) {
+      throw new Error(
+        `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`
+      );
+    }
+    const parentConfig = appState.plots.find((p) => p.id === this.parentId);
+    const termfilter = getCombinedTermFilter(appState, config.filter || parentConfig?.filter);
+    return {
+      termdbConfig: appState.termdbConfig,
+      termfilter,
+      vocab: appState.vocab,
+      config: Object.assign({}, config, {
+        settings: {
+          runChart2: config.settings?.runChart2
+        }
+      })
+    };
+  }
+  async setControls(viewModel) {
+    const range = { xMin: viewModel.xMin, xMax: viewModel.xMax, yMin: viewModel.yMin, yMax: viewModel.yMax };
+    this.dom.controls.selectAll("*").remove();
+    this.components.controls = await controlsInit({
+      app: this.app,
+      id: this.id,
+      holder: this.dom.controls.style("display", "inline-block"),
+      inputs: getRunChart2Controls(this.app, range, this)
+    });
+    this.components.controls.on("downloadClick.runChart2", async (event) => {
+      await this.download(event);
+    });
+    const appState = this.app.getState();
+    this.components.controls.update?.({ appState });
+  }
+  async download(event) {
+    const chartImages = this.getChartImages();
+    if (chartImages.length === 0) {
+      console.warn("No chart images available for download");
+      return;
+    }
+    const filename = this.getDownloadFilename();
+    const menu = new DownloadMenu(chartImages, filename);
+    menu.show(event.clientX, event.clientY, event.target);
+  }
+  getChartImages() {
+    const chartImages = [];
+    if (!this.view || !this.view.chartDom) return chartImages;
+    const svg = this.view.chartDom.svg;
+    if (svg && !svg.empty()) {
+      const chartName = this.state?.config?.xtw?.term?.name || "runChart2";
+      chartImages.push({ name: chartName, svg });
+    }
+    return chartImages;
+  }
+  getDownloadFilename() {
+    const xTermName = this.state?.config?.xtw?.term?.name || "runChart2";
+    const yTermName = this.state?.config?.ytw?.term?.name || "";
+    return yTermName ? `${xTermName}_${yTermName}` : xTermName;
+  }
+  async main() {
+    const c = this.state.config;
+    if (c.childType != this.type && c.chartType != this.type) return;
+    const config = await this.getMutableConfig();
+    if (this.dom.headerLabel) {
+      this.dom.headerLabel.text(config.ytw == null ? "FREQUENCY CHART" : "RUN CHART");
+    }
+    try {
+      this.model = new RunChart2Model(this);
+      const data = await this.model.fetchData(config);
+      if (!data) {
+        this.dom.error.text("No data available for the selected terms and filter.");
+      }
+      const settings = config.settings.runChart2;
+      this.viewModel = new RunChart2ViewModel(settings);
+      const viewData = this.viewModel.map(data);
+      await this.setControls(this.viewModel);
+      if (!this.dom.chartHolder.empty()) {
+        this.dom.chartHolder.selectAll("*").remove();
+      }
+      this.view = new RunChart2View(viewData, settings, this.dom.chartHolder, config, this);
+    } catch (e) {
+      console.error(e);
+      throw new Error(`RunChart2.main() failed: ${e}`);
+    }
+  }
+};
+var runChart2Init = getCompInit(RunChart2);
+var componentInit = runChart2Init;
+async function getPlotConfig(opts, app) {
+  const xtw = opts.xtw;
+  const ytw = opts.ytw ?? null;
+  if (!xtw) throw new Error("runChart2 requires xtw (X term wrapper)");
+  const raw = opts.settings || {};
+  const settings = {
+    ...raw,
+    runChart2: {
+      ...raw.runChart2 ?? {},
+      ...raw.frequencyChart?.showCumulativeFrequency !== void 0 && {
+        showCumulativeFrequency: raw.frequencyChart.showCumulativeFrequency
+      }
+    }
+  };
+  try {
+    if (!xtw.q) xtw.q = {};
+    xtw.q.mode = xtw.q.mode ?? "continuous";
+    await fillTermWrapper(xtw, app.vocabApi);
+    if (ytw) {
+      if (!ytw.q) ytw.q = {};
+      ytw.q.mode = ytw.q.mode ?? "continuous";
+      await fillTermWrapper(ytw, app.vocabApi);
+    }
+  } catch (e) {
+    console.error(e);
+    throw new Error(`runChart2 getPlotConfig() failed: ${e}`);
+  }
+  const defaultConfig = app.vocabApi.termdbConfig?.plotConfigByCohort?.default?.[opts.chartType] ?? (opts.chartType === "frequencyChart" ? app.vocabApi.termdbConfig?.plotConfigByCohort?.default?.runChart2 : void 0);
+  const config = {
+    xtw,
+    ytw,
+    settings: {
+      controls: { isOpen: false },
+      runChart2: getDefaultRunChart2Settings({ ...opts, settings })
+    }
+  };
+  return copyMerge(config, defaultConfig, {
+    ...opts,
+    xtw,
+    ytw,
+    settings: { ...settings, runChart2: settings.runChart2 ?? {} }
+  });
+}
+function makeChartBtnMenu(holder, chartsInstance) {
+  const menuDiv = holder.append("div");
+  const callback = (xterm, yterm) => {
+    chartsInstance.app.dispatch({
+      type: "plot_create",
+      config: {
+        chartType: "runChart2",
+        xtw: { term: xterm, q: { mode: "continuous" } },
+        ytw: { term: yterm, q: { mode: "continuous" } },
+        name: `${xterm.name} vs ${yterm.name}`
+      }
+    });
+  };
+  menuDiv.append("button").style("margin", "5px").style("padding", "10px 15px").style("border-radius", "20px").style("border-color", "#ededed").style("display", "block").text("Select data to plot ...").on("click", () => {
+    chartsInstance.dom.tip.clear();
+    select2Terms(chartsInstance.dom.tip, chartsInstance.app, "runChart2", "date", callback, "numeric");
+    chartsInstance.dom.tip.show();
+  });
+  const byDefault = chartsInstance.state.termdbConfig?.plotConfigByCohort?.default;
+  const runChart2Plots = byDefault?.runChart2?.plots ?? [];
+  for (const plot of runChart2Plots) {
+    const config = structuredClone(plot);
+    const dispatchPlot = () => {
+      chartsInstance.app.dispatch({
+        type: "plot_create",
+        config: {
+          chartType: "runChart2",
+          ...config
+        }
+      });
+      chartsInstance.dom.tip.hide();
+    };
+    menuDiv.append("button").attr("class", "sja_menuoption sja_sharp_border").style("margin", "5px").style("padding", "10px 15px").style("border-radius", "20px").style("border-color", "#ededed").style("display", "block").text(plot.name).on("mousedown", (event) => {
+      event.preventDefault();
+      event.stopPropagation();
+      dispatchPlot();
+    }).on("click", (event) => {
+      event.preventDefault();
+      event.stopPropagation();
+      chartsInstance.dom.tip.hide();
+    });
+  }
+}
+export {
+  RunChart2,
+  componentInit,
+  getPlotConfig,
+  makeChartBtnMenu,
+  runChart2Init
+};
+//# sourceMappingURL=RunChart2-YEAOBR2L.js.map