@sjcrh/proteinpaint-client 2.200.0 → 2.201.0

package/dist/chunk-5RVA43MN.js

@@ -1,274 +0,0 @@
-import {
-  termType2label
-} from "./chunk-7JRDJNLR.js";
-import {
-  TermTypes
-} from "./chunk-6PNPHACF.js";
-import {
-  __export
-} from "./chunk-HFNDKYVF.js";
-
-// plots/matrix/hierCluster.renderers.js
-var hierCluster_renderers_exports = {};
-__export(hierCluster_renderers_exports, {
-  maySetSandboxHeader: () => maySetSandboxHeader,
-  plotDendrogramHclust: () => plotDendrogramHclust,
-  renderImage: () => renderImage
-});
-function maySetSandboxHeader(appState) {
-  if (!this.dom.header) return;
-  const dataType = this.config.dataType;
-  const headerText = this.config?.headerText ? `${this.config.headerText} ` : "";
-  let title;
-  if (this.config.preBuiltPlotTitle) {
-    title = this.config.preBuiltPlotTitle;
-  } else if (this.config.appName) {
-    title = `${headerText}${this.config.appName} Clustering`;
-  } else if (dataType == TermTypes.PROTEOME_ABUNDANCE) {
-    title = this.config.assayCohortTitle ? `Protein Abundance Clustering (${this.config.assayCohortTitle})` : "Protein Abundance Clustering";
-  } else {
-    title = `${headerText}${termType2label(dataType)} Clustering`;
-  }
-  this.dom.header.text(title);
-}
-function plotDendrogramHclust(plotOnly) {
-  const d = this.dimensions;
-  const s = this.config.settings.matrix;
-  const xOffset = d.seriesXoffset;
-  const pxr = window.devicePixelRatio <= 1 ? 1 : window.devicePixelRatio;
-  const obj = this.hierClusterData.clustering;
-  const row = obj.row;
-  const col = obj.col;
-  const rowHeight = this.settings.matrix.clusterRowh, { xDendrogramHeight, yDendrogramHeight } = this.settings.hierCluster, colWidth = this.dimensions.dx;
-  if (plotOnly !== "left") {
-    if (!this.settings.hierCluster.clusterSamples) {
-      this.dom.topDendrogram.selectAll("*").remove();
-    } else {
-      const height2px = getHclustHeightScalefactor(col.height, yDendrogramHeight);
-      const height = yDendrogramHeight + 1e-7;
-      const width = Math.min(colWidth * col.inputOrder.length, s.imgWMax);
-      if (width <= 0 || height <= 0) {
-        console.warn(
-          "Skipping top dendrogram render: invalid dimensions.",
-          "This may indicate a zoom feedback loop issue.",
-          {
-            width,
-            height,
-            colWidth,
-            sampleCount: col.inputOrder.length,
-            yDendrogramHeight
-          }
-        );
-        this.dom.topDendrogram.selectAll("*").remove();
-        return;
-      }
-      const canvas = new OffscreenCanvas(width * pxr, height * pxr);
-      const ctx = canvas.getContext("2d");
-      ctx.scale(pxr, pxr);
-      ctx.translate(-d.xMin, 0);
-      ctx.imageSmoothingEnabled = false;
-      ctx.imageSmoothingQuality = "high";
-      ctx.strokeStyle = "black";
-      const mergedClusters = /* @__PURE__ */ new Map();
-      for (const [clusterid0, pair] of col.merge.entries()) {
-        const clusterid = clusterid0 + 1;
-        const children = [];
-        const childrenClusters = [];
-        let x1, x2, y1, y2;
-        if (pair.n1 < 0) {
-          const [name, columnNumber] = getLeafNumber(pair.n1, col.inputOrder, col.order);
-          x1 = colWidth * (columnNumber + 0.5);
-          y1 = yDendrogramHeight;
-          children.push({ name });
-        } else {
-          if (!mergedClusters.has(pair.n1)) throw "pair.n1 is positive but not seen before";
-          const c = mergedClusters.get(pair.n1);
-          x1 = c.x;
-          y1 = c.y;
-          children.push(...c.children);
-          childrenClusters.push(pair.n1);
-        }
-        if (pair.n2 < 0) {
-          const [name, columnNumber] = getLeafNumber(pair.n2, col.inputOrder, col.order);
-          x2 = colWidth * (columnNumber + 0.5);
-          y2 = yDendrogramHeight;
-          children.push({ name });
-        } else {
-          if (!mergedClusters.has(pair.n2)) throw "pair.n1 is positive but not seen before";
-          const c = mergedClusters.get(pair.n2);
-          x2 = c.x;
-          y2 = c.y;
-          children.push(...c.children);
-          childrenClusters.push(pair.n2);
-        }
-        const clusterY = yDendrogramHeight - col.height[clusterid0].height * height2px;
-        const highlight = this.clickedClusterIds?.includes(clusterid);
-        ctx.strokeStyle = highlight ? "red" : "black";
-        ctx.beginPath();
-        ctx.moveTo(x1, y1);
-        ctx.lineTo(x1, clusterY);
-        ctx.lineTo(x2, clusterY);
-        ctx.lineTo(x2, y2);
-        ctx.stroke();
-        ctx.closePath();
-        mergedClusters.set(clusterid, {
-          x: (x1 + x2) / 2,
-          y: clusterY,
-          children,
-          childrenClusters,
-          clusterPosition: {
-            x1,
-            x2,
-            y1,
-            y2,
-            clusterY
-          }
-        });
-      }
-      this.renderImage(
-        this.api,
-        this.dom.topDendrogram,
-        canvas,
-        width,
-        height,
-        xDendrogramHeight + 0.5 * colWidth + d.xMin,
-        s.margin.top + s.scrollHeight
-      );
-      col.mergedClusters = mergedClusters;
-    }
-  }
-  if (plotOnly !== "top") {
-    if (!this.settings.hierCluster.clusterRows) {
-      this.dom.leftDendrogram.selectAll("*").remove();
-    } else {
-      const height2px = getHclustHeightScalefactor(row.height, xDendrogramHeight);
-      const width = xDendrogramHeight + 1e-7;
-      const height = rowHeight * row.inputOrder.length;
-      const canvasWidthPx = Number.isFinite(width) && Number.isFinite(pxr) ? Math.max(0, Math.floor(width * pxr)) : 0;
-      const canvasHeightPx = Number.isFinite(height) && Number.isFinite(pxr) ? Math.max(0, Math.floor(height * pxr)) : 0;
-      if (!Number.isFinite(width) || !Number.isFinite(height) || !Number.isFinite(pxr) || width <= 0 || height <= 0 || pxr <= 0 || canvasWidthPx < 1 || canvasHeightPx < 1) {
-        console.warn(
-          "Skipping left dendrogram render: invalid dimensions.",
-          "This may indicate a zoom feedback loop issue.",
-          {
-            width,
-            height,
-            pxr,
-            canvasWidthPx,
-            canvasHeightPx,
-            rowHeight,
-            termCount: row.inputOrder.length,
-            xDendrogramHeight
-          }
-        );
-        this.dom.leftDendrogram.selectAll("*").remove();
-        return;
-      }
-      const canvas = new OffscreenCanvas(canvasWidthPx, canvasHeightPx);
-      const ctx = canvas.getContext("2d");
-      ctx.scale(pxr, pxr);
-      ctx.imageSmoothingEnabled = false;
-      ctx.imageSmoothingQuality = "high";
-      ctx.strokeStyle = "black";
-      const mergedClusters = /* @__PURE__ */ new Map();
-      for (const [clusterid0, pair] of row.merge.entries()) {
-        const clusterid = clusterid0 + 1;
-        const children = [];
-        const childrenClusters = [];
-        let x1, x2, y1, y2;
-        if (pair.n1 < 0) {
-          const [name, rowNumber] = getLeafNumber(pair.n1, row.inputOrder, row.order);
-          y1 = rowHeight * (rowNumber + 0.5);
-          x1 = xDendrogramHeight;
-          children.push({ name });
-        } else {
-          if (!mergedClusters.has(pair.n1)) throw "pair.n1 is positive but not seen before";
-          const c = mergedClusters.get(pair.n1);
-          x1 = c.x;
-          y1 = c.y;
-          children.push(...c.children);
-          childrenClusters.push(pair.n1);
-        }
-        if (pair.n2 < 0) {
-          const [name, rowNumber] = getLeafNumber(pair.n2, row.inputOrder, row.order);
-          y2 = rowHeight * (rowNumber + 0.5);
-          x2 = xDendrogramHeight;
-          children.push({ name });
-        } else {
-          if (!mergedClusters.has(pair.n2)) throw "pair.n1 is positive but not seen before";
-          const c = mergedClusters.get(pair.n2);
-          x2 = c.x;
-          y2 = c.y;
-          children.push(...c.children);
-          childrenClusters.push(pair.n2);
-        }
-        const clusterX = xDendrogramHeight - row.height[clusterid0].height * height2px;
-        const highlight = this.clickedLeftClusterIds?.includes(clusterid);
-        ctx.strokeStyle = highlight ? "red" : "black";
-        ctx.beginPath();
-        ctx.moveTo(x1, y1);
-        ctx.lineTo(clusterX, y1);
-        ctx.lineTo(clusterX, y2);
-        ctx.lineTo(x2, y2);
-        ctx.stroke();
-        ctx.closePath();
-        mergedClusters.set(clusterid, {
-          x: clusterX,
-          y: (y1 + y2) / 2,
-          children,
-          childrenClusters,
-          clusterPosition: {
-            x1,
-            x2,
-            y1,
-            y2,
-            clusterX
-          }
-        });
-      }
-      const t = this.termOrder.find((t2) => t2.grp.type == "hierCluster" || t2.grp.name == this.hcTermGroup.name);
-      const y = (
-        // t.labelOffset is commented out because it is already handled in adjustSvgDimensions
-        t.grpIndex * s.rowgspace + t.prevGrpTotalIndex * s.rowh + t.totalHtAdjustments + s.margin.top + s.scrollHeight + // left dendrogram image must be lower than the top dendrogram image height
-        yDendrogramHeight
-      );
-      this.renderImage(this.api, this.dom.leftDendrogram, canvas, width, height, 0, y);
-      row.mergedClusters = mergedClusters;
-    }
-  }
-}
-async function renderImage(componentApi, g, canvas, width, height, x, y) {
-  const sequenceId = componentApi.getSequenceId();
-  const reader = new FileReader();
-  reader.addEventListener(
-    "load",
-    () => {
-      if (componentApi.isStaleSequenceId(sequenceId)) return;
-      g.selectAll("*").remove();
-      g.append("image").attr("x", x + 0.033).attr("y", y + 0.033).attr("xlink:href", reader.result).attr("width", width).attr("height", height);
-    },
-    false
-  );
-  const blob = await canvas.convertToBlob({ quality: 1 });
-  reader.readAsDataURL(blob);
-}
-function getHclustHeightScalefactor(lst, ph) {
-  let max = lst[0].height;
-  for (const h of lst) max = Math.max(max, h.height);
-  return ph / max;
-}
-function getLeafNumber(minus, inputOrder, order) {
-  const name = inputOrder[-minus - 1];
-  if (!name) throw "minus not in inputOrder";
-  const i = order.findIndex((j) => j.name == name);
-  if (i == -1) throw "name not found in hc$order";
-  return [name, i];
-}
-
-export {
-  maySetSandboxHeader,
-  plotDendrogramHclust,
-  renderImage,
-  hierCluster_renderers_exports
-};
-//# sourceMappingURL=chunk-5RVA43MN.js.map

package/dist/chunk-5T3MOOEJ.js

@@ -1,379 +0,0 @@
-import {
-  addBrushes,
-  addNewBrush
-} from "./chunk-Z7VDFWIP.js";
-import {
-  niceNumLabels,
-  violinRenderer
-} from "./chunk-WPHUM5S5.js";
-import {
-  convertUnits
-} from "./chunk-JNITUVXP.js";
-import {
-  NumericRangeInput
-} from "./chunk-BZTWTH4Y.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-
-// filter/tvs.numeric.js
-var handler = {
-  type: "numeric",
-  term_name_gen,
-  get_pill_label,
-  getSelectRemovePos,
-  fillMenu,
-  setTvsDefaults
-};
-function term_name_gen(d) {
-  const name = d.term.name;
-  return name.length < 26 ? name : '<label title="' + name + '">' + name.substring(0, 24) + "...</label>";
-}
-function get_pill_label(tvs) {
-  if (tvs.ranges.length == 1) {
-    const v = tvs.ranges[0];
-    if ("value" in v) {
-      if (v.label) return { txt: v.label };
-      if (tvs.term.values && tvs.term.values[v.value] && tvs.term.values[v.value].label)
-        return { txt: tvs.term.values[v.value].label };
-      console.error(`key "${v.value}" not found in values{} of ${tvs.term.name}`);
-      return { txt: v.value };
-    }
-    return { txt: format_val_text(v, tvs.term) };
-  }
-  return { txt: tvs.ranges.length + " intervals" };
-}
-function format_val_text(range, term) {
-  const x = '<span style="font-family:Times;font-style:italic;font-size:1em; vertical-align:top">x</span>';
-  if (range.startunbounded && range.stopunbounded) {
-    const inf = (sign = "") => `<span style='vertical-align: middle; font-size:1.1em; line-height: 0.9em'>${sign}\u221E</span>`;
-    const lt = `<span style='vertical-align: top; font-size: 0.9em'>&lt;</span>`;
-    return `<span>${inf("\uFE63")} ${lt} ${x} ${lt} ${inf("\uFE62")}</span>`;
-  }
-  const vc = term.valueConversion;
-  if (range.startunbounded)
-    return `${x} ${range.stopinclusive ? "&le;" : "&lt;"} ${vc ? convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.stop}`;
-  if (range.stopunbounded)
-    return `${x} ${range.startinclusive ? "&ge;" : "&gt;"} ${vc ? convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.start}`;
-  let startName, stopName;
-  if (vc) {
-    startName = convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor);
-    stopName = convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor);
-  } else {
-    ;
-    [startName, stopName] = niceNumLabels([range.start, range.stop]);
-  }
-  return `${startName} 
-			${range.startinclusive ? "&le;" : "&lt;"}
-			${x}
-			${range.stopinclusive ? "&le;" : "&lt;"}
-			${stopName}`;
-}
-function getSelectRemovePos(j, tvs) {
-  return j - tvs.ranges.slice(0, j).filter((a) => a.start || a.stop).length;
-}
-async function fillMenu(self, div, tvs) {
-  const num_parent_div = div.append("div");
-  self.num_obj = {};
-  self.num_obj.num_div = num_parent_div.append("div").attr("class", "num_div").style("padding", "5px").style("color", "#000");
-  self.num_obj.plot_size = {
-    width: 450,
-    height: 100,
-    xpad: 10,
-    ypad: 20,
-    radius: 8
-  };
-  if (typeof self.opts.vocabApi.getViolinBox == "function") {
-    try {
-      const data = await self.opts.vocabApi.getViolinBox(
-        {
-          plotType: "violin",
-          tw: { term: tvs.term, q: { mode: "continuous" } },
-          // must supply this filter and override state filter in function, so the density plot will not be limited to range defined by current numeric tvs but will show whole range
-          filter: self.filter,
-          svgw: self.num_obj.plot_size.width,
-          radius: self.num_obj.plot_size.radius
-        },
-        self.opts.getCategoriesArguments
-      );
-      if (data.error) throw data.error;
-      if (data.max === null && data.min === null) {
-        throw `No data available under current filter conditions.`;
-      }
-      self.num_obj.density_data = data;
-    } catch (err) {
-      throw err;
-    }
-  } else {
-    self.num_obj.density_data = {};
-  }
-  if (self.num_obj.density_data.error) throw self.num_obj.density_data.error;
-  if (!self.num_obj.density_data.charts?.[""]?.plots?.[0]?.density?.bins) {
-    addRangeTableNoDensity(self, tvs);
-    return;
-  }
-  self.vr = new violinRenderer({
-    holder: self.num_obj.num_div,
-    rd: self.num_obj.density_data,
-    width: self.num_obj.plot_size.width,
-    radius: self.num_obj.plot_size.radius,
-    height: self.num_obj.plot_size.height
-  });
-  self.vr.render();
-  self.num_obj.svg = self.vr.svg;
-  self.num_obj.range_table = self.num_obj.num_div.append("table").style("table-layout", "fixed").style("border-collapse", "collapse");
-  const ranges = [];
-  for (const [index, range] of tvs.ranges.entries()) {
-    range.index = index;
-    ranges.push(range);
-  }
-  self.num_obj.brush_g = self.vr.brushG.attr("class", "brush_g");
-  self.num_obj.xscale = self.vr.axisScale;
-  self.num_obj.ranges = ranges;
-  self.num_obj.brushes = [];
-  addBrushes(self);
-  addRangeTable(self);
-  if (!ranges.length) {
-    const callback = () => addRangeTable(self);
-    addNewBrush(self, "center", callback);
-  }
-  self.num_obj.brushes.forEach((brush) => brush.init());
-  await showCheckList_numeric(self, tvs, div);
-}
-function setTvsDefaults(tvs) {
-  if (!tvs.ranges) tvs.ranges = [];
-}
-function addRangeTableNoDensity(self, tvs) {
-  const termrange = tvs.term.range || {};
-  const range = tvs.ranges && tvs.ranges[0] ? tvs.ranges[0] : termrange;
-  range.min = "min" in tvs.term ? tvs.term.min : null;
-  range.max = "max" in tvs.term ? tvs.term.max : null;
-  const num_div = self.num_obj.num_div;
-  num_div.selectAll("*").remove();
-  const brush = {};
-  const holder = num_div.append("div").style("padding-left", "5px");
-  const rangeRow = holder.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px");
-  const rangeLabel = rangeRow.append("span");
-  brush.equation_div = rangeRow.append("div");
-  brush.rangeInput = new NumericRangeInput(brush.equation_div, range, () => {
-  }, { width: "125px" });
-  const mafFilterMode = self.opts.isMafFilter ? tvs.term.mafFilterMode || "maf" : null;
-  if (mafFilterMode == "maf") {
-    rangeLabel.text("MAF Range (0-1)");
-    const depthRow = holder.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px").style("margin-top", "5px");
-    depthRow.append("span").text("Minimum Total Depth");
-    brush.depthInput = depthRow.append("input").attr("type", "number").attr("min", 1).attr("step", 1).style("width", "125px").property("value", tvs.minAllelicDepth);
-    brush.apply_btn = addApplyButton(holder.append("div").style("margin-top", "10px"));
-  } else if (mafFilterMode == "totalDepth" || mafFilterMode == "altDepth") {
-    rangeLabel.text(mafFilterMode == "totalDepth" ? "Total Depth" : "Alt Allele Depth");
-    brush.apply_btn = addApplyButton(rangeRow);
-  } else {
-    rangeLabel.text("Range");
-    brush.apply_btn = addApplyButton(rangeRow);
-  }
-  function addApplyButton(holder2) {
-    return holder2.append("button").text("APPLY").on("click", clickApply);
-  }
-  function clickApply() {
-    const r = brush.rangeInput.getRange();
-    if (!Number.isFinite(r.start) && !Number.isFinite(r.stop)) {
-      window.alert("Invalid range.");
-      return;
-    }
-    const new_tvs = { term: tvs.term, ranges: [r] };
-    if (brush.depthInput) {
-      const minAllelicDepth = Number(brush.depthInput.property("value"));
-      if (!Number.isFinite(minAllelicDepth)) {
-        window.alert("Minimum allelic depth must be a numeric value.");
-        return;
-      }
-      new_tvs.minAllelicDepth = Math.max(minAllelicDepth, 1);
-    }
-    self.dom.tip.hide();
-    self.opts.callback(new_tvs);
-  }
-}
-function addRangeTable(self) {
-  const brushes = self.num_obj.brushes;
-  const range_divs = self.num_obj.range_table.selectAll(".range_div").data(brushes);
-  range_divs.exit().each(function() {
-    select_default(this).style("opacity", 1).transition().duration(100).style("opacity", 0).remove();
-  });
-  range_divs.enter().append("tr").attr("class", "range_div").style("white-space", "nowrap").style("padding", "2px").transition().duration(200).each(function(brush, i) {
-    enterRange(self, this, brush, i);
-  });
-}
-function enterRange(self, tr, brush, i) {
-  if (!brush.range_tr) brush.range_tr = select_default(tr);
-  const range_tr = brush.range_tr;
-  const xscale = self.num_obj.xscale;
-  range_tr.append("td").style("margin-left", "10px").style("padding", "3px 10px").style("font-size", ".9em").text("Range " + (i + 1) + ": ");
-  brush.equation_td = range_tr.append("td").style("width", "150px");
-  brush.rangeInput = new NumericRangeInput(brush.equation_td, brush.range, apply);
-  makeRangeButtons(self, brush);
-  if (i == 0) {
-    self.num_obj.range_table.append("tr").attr("class", "note_tr").append("td").attr("colspan", "3").append("div").style("font-size", ".8em").style("margin-left", "20px").style("font-style", "italic").style("color", "#888").html("Option 1: Drag the rectangle to select a range. Overlapping ranges will be merged.");
-  }
-  if (i == 0) {
-    self.num_obj.range_table.append("tr").attr("class", "note_tr").append("td").attr("colspan", "3").append("div").style("font-size", ".8em").style("margin-left", "20px").style("font-style", "italic").style("color", "#888").html(
-      `Option 2: Type in values to select a range.${self.tvs.term.valueConversion ? ` Values are in the unit of ${self.tvs.term.valueConversion.fromUnit}.` : ""}`
-    );
-  }
-  async function apply(new_range) {
-    try {
-      brush.range = new_range;
-      const minvalue = self.num_obj.density_data.min;
-      const maxvalue = self.num_obj.density_data.max;
-      const start = new_range.value != void 0 ? new_range.value : new_range.start != void 0 ? new_range.start : minvalue;
-      const stop = new_range.value != void 0 ? new_range.value : new_range.stop != void 0 ? new_range.stop : maxvalue;
-      brush.elem.call(brush.d3brush).call(brush.d3brush.move, [start, stop].map(xscale));
-    } catch (e) {
-      window.alert(e);
-    }
-  }
-  function makeRangeButtons(self2, brush2) {
-    const buttons_td = brush2.range_tr.append("td");
-    const range = brush2.range;
-    brush2.apply_btn = buttons_td.append("button").style("margin-left", "10px").text("APPLY").on("click", async () => {
-      self2.dom.tip.hide();
-      const new_range = brush2.rangeInput.parseRange();
-      const new_tvs = JSON.parse(JSON.stringify(self2.tvs));
-      delete new_tvs.groupset_label;
-      if (self2.num_obj.ranges.length > 1) new_tvs.ranges = mergeOverlapRanges(self2, new_range);
-      else new_tvs.ranges[range.index] = new_range;
-      try {
-        validateNumericTvs(new_tvs);
-        self2.opts.callback(new_tvs);
-      } catch (ex) {
-        alert(ex);
-      }
-    });
-    buttons_td.append("button").attr("class", "sja_filter_tag_btn sjpp_delete_btn").style("display", self2.num_obj.ranges.length > 1 ? "inline-block" : "none").style("margin-left", "10px").style("text-transform", "uppercase").text("Delete").on("click", async () => {
-      const new_tvs = JSON.parse(JSON.stringify(self2.tvs));
-      new_tvs.ranges.splice(range.index, 1);
-      self2.num_obj.ranges.pop();
-      self2.num_obj.brushes.pop();
-      self2.num_obj.num_div.select(".note_tr").remove();
-      addBrushes(self2);
-      addRangeTable(self2);
-      if (new_tvs.ranges.length) self2.opts.callback(new_tvs);
-    });
-  }
-}
-function mergeOverlapRanges(self, new_range) {
-  let ranges = JSON.parse(JSON.stringify(self.tvs.ranges));
-  let merged_flag = false;
-  for (const [i, range] of ranges.entries()) {
-    if (!range.value && new_range.index != i) {
-      if (new_range.start <= range.start && new_range.stop >= range.stop) {
-        range.start = new_range.start;
-        range.stop = new_range.stop;
-        merged_flag = true;
-      } else if (new_range.start <= range.stop && new_range.stop >= range.stop) {
-        range.stop = new_range.stop;
-        merged_flag = true;
-      } else if (new_range.stop >= range.start && new_range.start <= range.start) {
-        range.start = new_range.start;
-        merged_flag = true;
-      } else if (new_range.start >= range.start && new_range.stop <= range.stop) {
-        merged_flag = true;
-      } else if (new_range.startunbounded) {
-        if (new_range.stop > range.stop) {
-          range.stop = new_range.stop;
-        }
-        delete range.start;
-        range.startunbounded = true;
-        merged_flag = true;
-      } else if (new_range.stopunbounded) {
-        if (new_range.start < range.start) {
-          range.start = new_range.start;
-        }
-        delete range.stop;
-        range.stopunbounded = true;
-        merged_flag = true;
-      }
-    }
-  }
-  if (merged_flag) {
-    if (new_range.index <= ranges.length - 1) ranges.splice(new_range.index, 1);
-  } else {
-    ranges = JSON.parse(JSON.stringify(self.tvs.ranges));
-    if (new_range.index) ranges[new_range.index] = new_range;
-    else ranges.push(new_range);
-  }
-  return ranges;
-}
-async function showCheckList_numeric(self, tvs, div) {
-  if (!tvs.term.values) {
-    return;
-  }
-  const values = await self.opts.vocabApi.getNumericUncomputableCategories(tvs.term, self.filter);
-  const unannotated_cats = [];
-  const lst = values?.lst || values;
-  for (const cat of lst) {
-    const key = "key" in cat ? cat.key : cat.value;
-    if (!("key" in cat)) cat.key = key;
-    if (!("value" in cat)) cat.value = key;
-    if (key in tvs.term.values) {
-      cat.label = tvs.term.values[key].label;
-      unannotated_cats.push(cat);
-    }
-  }
-  const sortedVals = unannotated_cats.sort((a, b) => {
-    return b.samplecount - a.samplecount;
-  });
-  const unanno_div = div.append("div").style("padding", "5px").style("color", "#000");
-  const callback = (indexes) => {
-    try {
-      const new_tvs = JSON.parse(JSON.stringify(tvs));
-      delete new_tvs.groupset_label;
-      new_tvs.ranges = [
-        ...new_tvs.ranges.filter((r) => !("value" in r)),
-        ...indexes.map((i) => ({ value: sortedVals[i].value, label: sortedVals[i].label }))
-      ];
-      self.dom.tip.hide();
-      if (new_tvs.ranges.length == 0) throw "select at least one range or category";
-      if (JSON.parse(JSON.stringify(tvs) != new_tvs)) {
-        try {
-          validateNumericTvs(new_tvs);
-        } catch (e) {
-          window.alert(e);
-          return;
-        }
-        self.opts.callback(new_tvs);
-      }
-    } catch (e) {
-      window.alert(e);
-    }
-  };
-  const values_table = self.makeValueTable(unanno_div, tvs, sortedVals, callback).node();
-}
-function validateNumericTvs(tvs) {
-  if (!tvs.term) throw "tvs.term is not defined";
-  if (!tvs.ranges) throw `.values[] missing for a term ${tvs.term.name}`;
-  if (!Array.isArray(tvs.ranges)) throw `.values[] is not an array for a term ${tvs.term.name}`;
-  if (!tvs.ranges.length) throw `no categories selected for ${tvs.term.name}`;
-  for (const range of tvs.ranges) {
-    if (range.value != void 0) {
-      if (!range.label) throw `.label missing for special category for a term ${tvs.term.name}`;
-    } else {
-      if (range.startunbounded) {
-        if (range.stopunbounded) throw `both start & stop are unbounded for a term ${tvs.term.name}`;
-        if (!Number.isFinite(range.stop)) throw `.stop undefined when start is unbounded for a term ${tvs.term.name}`;
-      } else if (range.stopunbounded) {
-        if (!Number.isFinite(range.start)) throw `.start undefined when stop is unbounded for a term ${tvs.term.name}`;
-      } else {
-        if (!Number.isFinite(range.start))
-          throw `.start undefined when start is not unbounded for a term ${tvs.term.name}`;
-        if (!Number.isFinite(range.stop)) throw `.stop undefined when stop is not unbounded for a term ${tvs.term.name}`;
-        if (range.start >= range.stop) throw `.start is not lower than stop for a term ${tvs.term.name}`;
-      }
-    }
-  }
-}
-
-export {
-  handler,
-  format_val_text
-};
-//# sourceMappingURL=chunk-5T3MOOEJ.js.map