@sjcrh/proteinpaint-client 2.196.0 → 2.197.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-HV22W5N3.js +1373 -0
- package/dist/AIProjectAdmin-7QGTPN3B.js +958 -0
- package/dist/AppHeader-NOKET4YE.js +835 -0
- package/dist/BoxPlot-SPG66F4C.js +1217 -0
- package/dist/CorrelationVolcano-3LEMTFXP.js +619 -0
- package/dist/DE-WCCADMXA.js +95 -0
- package/dist/DEinput-IZNPYPKH.js +301 -0
- package/dist/DifferentialAnalysis-SDZXIUXP.js +242 -0
- package/dist/DifferentialAnalysis-SDZXIUXP.js.map +7 -0
- package/dist/Disco-M5RNUOWG.js +3297 -0
- package/dist/Disco.UI-RVUOPT6Y.js +249 -0
- package/dist/DmrPlot-R2N534FS.js +642 -0
- package/dist/GB-DY6XWOJE.js +1356 -0
- package/dist/GB-DY6XWOJE.js.map +7 -0
- package/dist/GSEA-3TB3PYEV.js +846 -0
- package/dist/GSEA-3TB3PYEV.js.map +7 -0
- package/dist/GeneExpInput-VWCPHOVO.js +367 -0
- package/dist/HicApp-F2MY3NXP.js +2250 -0
- package/dist/IDCViewer-PT7IV6T2.js +10799 -0
- package/dist/IDCViewer-PT7IV6T2.js.map +7 -0
- package/dist/NumBinaryEditor-AL2NWII2.js +271 -0
- package/dist/NumBinaryEditor.unit.spec-NFRJHFNX.js +286 -0
- package/dist/NumContEditor-CTFJVIHU.js +109 -0
- package/dist/NumContEditor.unit.spec-FXGGCMTD.js +169 -0
- package/dist/NumCustomBinEditor-JFIJ2X6E.js +38 -0
- package/dist/NumCustomBinEditor.unit.spec-ZKIZXS53.js +284 -0
- package/dist/NumDiscreteEditor-E7SPHF55.js +179 -0
- package/dist/NumDiscreteEditor.unit.spec-QKKRZJMU.js +202 -0
- package/dist/NumRegularBinEditor-JSLTZIAQ.js +38 -0
- package/dist/NumRegularBinEditor.unit.spec-W73BA6L4.js +227 -0
- package/dist/NumSplineEditor-ZEXYGKKF.js +198 -0
- package/dist/NumSplineEditor.unit.spec-EHKI4CY7.js +199 -0
- package/dist/NumericDensity-ZXM6TB33.js +38 -0
- package/dist/NumericDensity.unit.spec-PUFRE5XA.js +221 -0
- package/dist/NumericHandler-73TUDM3R.js +39 -0
- package/dist/NumericHandler.unit.spec-EITBD47U.js +219 -0
- package/dist/ProteomeInput-QICOUSRW.js +395 -0
- package/dist/ProteomeInput-QICOUSRW.js.map +7 -0
- package/dist/RunChart2-4JYV2Z7B.js +758 -0
- package/dist/SC-77HA6SBW.js +1120 -0
- package/dist/SC-77HA6SBW.js.map +7 -0
- package/dist/Volcano-3546I4MG.js +1385 -0
- package/dist/Volcano-3546I4MG.js.map +7 -0
- package/dist/WSIViewer-DQAXX7QJ.js +48562 -0
- package/dist/WsiSamplesPlot-AGOLPLK3.js +165 -0
- package/dist/adSandbox-ZE5QOTN5.js +38 -0
- package/dist/animatedBubbleChart-ILMDNAVK.js +555 -0
- package/dist/app-JBFRJ5OO.js +49 -0
- package/dist/app-YVNRAZWU.js +37 -0
- package/dist/app.js +16 -16
- package/dist/bam-A2PVAF3J.js +860 -0
- package/dist/barchart-2XQ7F6LT.js +47 -0
- package/dist/barchart.data-6XLK7D63.js +22 -0
- package/dist/barchart.events-DKJDKSPN.js +47 -0
- package/dist/barchart.integration.spec-UTTCQJRL.js +2196 -0
- package/dist/barchart2-2FRVUVJG.js +314 -0
- package/dist/block-3KOPYQ25.js +6255 -0
- package/dist/block-3KOPYQ25.js.map +7 -0
- package/dist/block.init-3KLLFGGV.js +38 -0
- package/dist/block.mds.expressionrank-XU3MBIOX.js +359 -0
- package/dist/block.mds.geneboxplot-VQTBL7T4.js +828 -0
- package/dist/block.mds.junction-IYWWRIJD.js +1545 -0
- package/dist/block.mds.svcnv-BMY5DCAM.js +6801 -0
- package/dist/block.svg-AT4GYQHX.js +164 -0
- package/dist/block.tk.aicheck-RANOFGDZ.js +283 -0
- package/dist/block.tk.ase-CBWJA3RN.js +365 -0
- package/dist/block.tk.bam-D7JBRNFQ.js +1906 -0
- package/dist/block.tk.bedgraphdot-IEHNIGVI.js +384 -0
- package/dist/block.tk.bigwig.ui-3SAXUJU4.js +212 -0
- package/dist/block.tk.hicstraw-R5EHQFGM.js +823 -0
- package/dist/block.tk.junction-JFCEXZZC.js +2364 -0
- package/dist/block.tk.junction.textmatrixui-4V7MV6TD.js +199 -0
- package/dist/block.tk.ld-LP4DIHAJ.js +99 -0
- package/dist/block.tk.menu-FTVZU2HA.js +1029 -0
- package/dist/block.tk.pgv-CRAMVKU4.js +944 -0
- package/dist/brainImaging-DXLK5XZ6.js +423 -0
- package/dist/brainRegions-AMSXQT3T.js +221 -0
- package/dist/bubbleHeatmap-SXBARILL.js +383 -0
- package/dist/chunk-23AEAG37.js +314 -0
- package/dist/chunk-23AEAG37.js.map +7 -0
- package/dist/chunk-2AHDWWQO.js +276 -0
- package/dist/chunk-2OJ577BB.js +299 -0
- package/dist/chunk-433DTQ6C.js +26 -0
- package/dist/chunk-46CPDZSW.js +617 -0
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- package/dist/chunk-H42SJNXA.js +1535 -0
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- package/dist/chunk-JT7HC65V.js.map +7 -0
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- package/dist/chunk-K7QY24X2.js +1223 -0
- package/dist/chunk-K7QY24X2.js.map +7 -0
- package/dist/chunk-KOLVLBMI.js +100 -0
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- package/dist/chunk-KTKZSYIH.js.map +7 -0
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- package/dist/chunk-M2PPUO4E.js +315 -0
- package/dist/chunk-M2PPUO4E.js.map +7 -0
- package/dist/chunk-MCXQL4W2.js +226 -0
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- package/dist/chunk-ZPXSPJV2.js +263 -0
- package/dist/chunk-ZRSJVACE.js +1500 -0
- package/dist/chunk-ZRSJVACE.js.map +7 -0
- package/dist/condition-YCPNILTV.js +332 -0
- package/dist/controls-RW5MWSLN.js +41 -0
- package/dist/controls.config-MP3CSYR4.js +39 -0
- package/dist/correlation-7AQRU4YR.js +102 -0
- package/dist/cuminc-WYLKIOXR.js +1149 -0
- package/dist/cuminc.integration.spec-MSAWDLD7.js +678 -0
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- package/dist/customdata.inputui-YU4IQJOV.js +289 -0
- package/dist/dataDownload-72DIPZ45.js +330 -0
- package/dist/dataDownload.integration.spec-HRLMWQN7.js +193 -0
- package/dist/databrowser.ui-3PE25HK4.js +433 -0
- package/dist/dictionary-Y3ICL4AE.js +118 -0
- package/dist/dnaMethylation-SVGDW64U.js +38 -0
- package/dist/dnaMethylation.integration.spec-B7GLAFZI.js +203 -0
- package/dist/dofetch-42KOXNPF.js +51 -0
- package/dist/e2pca-CLFGEFJH.js +350 -0
- package/dist/ep-PUHV2DMO.js +1256 -0
- package/dist/expclust.gdc.spec-N7YDJAOZ.js +307 -0
- package/dist/facet-JFFJJCNT.js +521 -0
- package/dist/forms2-XZAWW3RN.js +539 -0
- package/dist/gb-SQJ5PWOH.js +88 -0
- package/dist/geneExpClustering-EG2BLMQX.js +249 -0
- package/dist/geneExpression-J42BGP3B.js +38 -0
- package/dist/geneExpression-QRK3LNMV.js +313 -0
- package/dist/geneExpression.unit.spec-X7HVIFZA.js +102 -0
- package/dist/geneORA-SVBPO66K.js +278 -0
- package/dist/geneRanking-HNMMLZIX.js +553 -0
- package/dist/geneVariant-RVQKNVQO.js +39 -0
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- package/dist/geneVariant.integration.spec-DOMX4GMP.js +198 -0
- package/dist/genefusion.ui-QS7AG46F.js +309 -0
- package/dist/geneset-JKOX3VIW.js +208 -0
- package/dist/genomeBrowser.spec-IRSTT2OX.js +281 -0
- package/dist/grin2-G6DA4M7Q.js +1095 -0
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- /package/dist/{sampleView-WKZT5ZFE.js.map → singleCellCellType-FJ53DRXD.js.map} +0 -0
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- /package/dist/{singleCellCellType-2SRGROMS.js.map → singleCellGeneExpression-RZE5UVL4.js.map} +0 -0
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- /package/dist/{singleCellGeneExpression-RASZA4NO.js.map → singleCellPlot-Q5UNIW3M.js.map} +0 -0
- /package/dist/{singlecell-CFA43TTU.js.map → singlecell-N7F5KVIB.js.map} +0 -0
- /package/dist/{singlecell-JS5SIZHY.js.map → singlecell-TX5AQ4WM.js.map} +0 -0
- /package/dist/{singleCellPlot-TIYA3GNM.js.map → snp-S4O7SVDD.js.map} +0 -0
- /package/dist/{snp.unit.spec-TR5TCO7X.js.map → snp.unit.spec-WSQMZSTE.js.map} +0 -0
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- /package/dist/{spliceevent.a53ss.diagram-PATK67SH.js.map → spliceevent.a53ss.diagram-FGRQR73W.js.map} +0 -0
- /package/dist/{spliceevent.exonskip.diagram-7B3SEOAJ.js.map → spliceevent.exonskip.diagram-TVH44RNL.js.map} +0 -0
- /package/dist/{spliceevent.noeventdiagram-4NPNZUEN.js.map → spliceevent.noeventdiagram-G2CMYYE7.js.map} +0 -0
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- /package/dist/{ssGSEA.unit.spec-ASUWKVUT.js.map → ssGSEA.unit.spec-BYIVB7FZ.js.map} +0 -0
- /package/dist/{summarizeCnvGeneexp-KWRFGX32.js.map → summarizeCnvGeneexp-IZNOX4E7.js.map} +0 -0
- /package/dist/{summarizeGeneexpSurvival-FIPIMEJR.js.map → summarizeGeneexpSurvival-DJZ2R24E.js.map} +0 -0
- /package/dist/{summarizeMutationCnv-IUYRVLZG.js.map → summarizeMutationCnv-CO2TVWOI.js.map} +0 -0
- /package/dist/{ssGSEA-XMW5BLAU.js.map → summarizeMutationDiagnosis-EUZXCSZP.js.map} +0 -0
- /package/dist/{summarizeMutationSurvival-HFHYB7DT.js.map → summarizeMutationSurvival-CXFT3HWL.js.map} +0 -0
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- /package/dist/{summary.integration.spec-WLBAJL44.js.map → summary.integration.spec-WBEYSDCA.js.map} +0 -0
- /package/dist/{summaryInput-NJWVXDXW.js.map → summaryInput-JVH3R54R.js.map} +0 -0
- /package/dist/{sunburst-PXGF4WM6.js.map → sunburst-CTJTXHSA.js.map} +0 -0
- /package/dist/{summary-AZUNEZ5I.js.map → survival-DLLVUG2P.js.map} +0 -0
- /package/dist/{survival-RAU4XCKG.js.map → survival-XFVYNI6S.js.map} +0 -0
- /package/dist/{svgraph-7UCFRL6A.js.map → svgraph-ACEBMDIX.js.map} +0 -0
- /package/dist/{svmr-DB3RY2ID.js.map → svmr-IQEDSZ2C.js.map} +0 -0
- /package/dist/{table-HJRWWXGM.js.map → table-2IF6UGHR.js.map} +0 -0
- /package/dist/{survival-ZZ4QLZHK.js.map → termCollection-JOLQJYJ3.js.map} +0 -0
- /package/dist/{termCollection-WPON7RG3.js.map → termCollection-PSXFFR32.js.map} +0 -0
- /package/dist/{termCollection.unit.spec-254ESHOE.js.map → termCollection.unit.spec-4SOZP4FY.js.map} +0 -0
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- /package/dist/{tp.ui-ELEQGSK2.js.map → tp.ui-6STLQEXX.js.map} +0 -0
- /package/dist/{tk-SUAFM5YA.js.map → tvs.dt-FSA7KPSQ.js.map} +0 -0
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- /package/dist/{tvs.dtfusion-5F7MYFHZ.js.map → tvs.dtfusion-UL3YENUM.js.map} +0 -0
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- /package/dist/{tvs.dtsv-DARTSV5H.js.map → tvs.dtsv-OTNHXYOJ.js.map} +0 -0
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- /package/dist/{tvs.termCollection-KCMALH6B.js.map → tvs.termCollection-ZAPCUMUW.js.map} +0 -0
- /package/dist/{tvs.dt-DCXY66YY.js.map → violin-HEFFKPL5.js.map} +0 -0
- /package/dist/{violin.integration.spec-QQ43XWHQ.js.map → violin.integration.spec-774N4G5A.js.map} +0 -0
- /package/dist/{violin-C26FW5WK.js.map → violin.interactivity-XNYJSK53.js.map} +0 -0
- /package/dist/{violin.interactivity-H2BHC6M4.js.map → violin.renderer-R74VSGRC.js.map} +0 -0
- /package/dist/{violin.renderer-GSG2I7AV.js.map → vocabulary-OHMC6NWL.js.map} +0 -0
package/dist/polar2-NNOZOQQJ.js
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import {
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getDefaultProfilePlotSettings,
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getProfilePlotConfig,
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profilePlot
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fillTwLst,
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renderTable
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dofetch3
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getCompInit
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arc_default
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// plots/profile/polar2.ts
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var ProfilePolar2 = class extends profilePlot {
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constructor(opts) {
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super(opts, "profilePolar2");
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this.radius = 250;
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static {
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this.type = "profilePolar2";
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async init(appState) {
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const config = appState.plots.find((p) => p.id === this.id);
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this.scoreTerms = config.terms;
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this.angle = Math.PI * 2 / config.terms.length;
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}
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async main() {
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try {
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/**
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* Fetches aggregated module scores from termdb/profilePolar2Scores after
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* super.setControls() builds the filter UI and sets this.filter. The server
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* derives the facility term from the request term IDs and returns the median
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* percentage across all eligible sites.
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async setControls(additionalInputs = []) {
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}
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async fetchAggregatedScores() {
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return dofetch3("termdb/profilePolar2Scores", {
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body: {
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genome: this.state.vocab.genome,
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scoreTerms: this.scoreTerms.map((t) => ({
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onMouseOut(event) {
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onMouseOver(event) {
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menu.d.text(`${d.module} ${label}`);
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menu.show(event.clientX, event.clientY, true, true);
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}
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}
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plot() {
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this.createSvg();
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this.drawTable(rows);
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createSvg() {
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this.dom.tableDiv = this.dom.plotDiv.append("div").attr("data-testid", "sjpp-profilePolar2-data-table").style("display", "inline-block").style("vertical-align", "top").style("margin", "45px 20px");
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this.dom.svg.append("text").attr("transform", `translate(130, 40)`).attr("font-weight", "bold").text(this.config.title);
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const x = 280, y = 330;
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this.polarG = this.dom.svg.append("g").attr("transform", `translate(${x},${y})`);
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this.legendG = this.dom.svg.append("g").attr("data-testid", "sjpp-profilePolar2-legend").attr("transform", `translate(${x + 280}, ${y - 200})`);
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this.filterG = this.dom.svg.append("g").attr("transform", `translate(${x + 280},${y})`);
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}
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drawGrid() {
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for (let i = 0; i <= 10; i++) this.drawGridCircle(i * 10);
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this.drawGradeCircle(50, "C");
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this.drawGradeCircle(75, "B");
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this.drawGradeCircle(100, "A");
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for (let i = 0; i <= 10; i++) {
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const percent = i * 10;
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this.polarG.append("text").attr("transform", `translate(-10, ${-percent / 100 * this.radius + 5})`).attr("text-anchor", "end").style("font-size", "0.8rem").text(`${percent}%`).attr("pointer-events", "none");
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}
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drawGridCircle(percent) {
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const circle = this.polarG.append("circle").attr("r", percent / 100 * this.radius).style("fill", "none").style("opacity", "0.5");
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if (percent != 50) circle.style("stroke", "#aaa");
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}
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drawGradeCircle(percent, label) {
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const circle = this.polarG.append("circle").attr("r", percent / 100 * this.radius).style("fill", "none").style("opacity", "0.5");
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if (percent != 100) circle.style("stroke-dasharray", "5, 5").style("stroke-width", "2").style("stroke", "black");
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this.polarG.append("text").attr("transform", `translate(15, ${-(percent / 100 - 0.125) * this.radius + 10})`).attr("text-anchor", "middle").text(label).style("font-weight", "bold").style("font-size", "24px").attr("pointer-events", "none");
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}
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/** Draws the arc slices and returns table rows for drawTable(). */
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drawArcs() {
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const rows = [];
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let i = 0;
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for (const d of this.config.terms) {
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d.i = i;
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const color = d.score.term.color;
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const percentage = this.getPercentage(d);
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rows.push([{ color, disabled: true }, { value: d.module }, { value: percentage ?? "N/A" }]);
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this.polarG.append("g").append("path").datum(d).attr("fill", color).attr("stroke", "white").attr(
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"d",
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this.arcGenerator({
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outerRadius: percentage / 100 * this.radius,
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startAngle: i * this.angle,
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endAngle: (i + 1) * this.angle
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})
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).on("click", (event) => this.onMouseOver(event));
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i++;
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}
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return rows;
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}
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drawTable(rows) {
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const columns = [{ label: "Color" }, { label: "Module" }, { label: "Score", align: "center" }];
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this.dom.tableDiv.selectAll("*").remove();
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if (!this.isComparison)
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renderTable({
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rows,
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columns,
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div: this.dom.tableDiv,
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showLines: true,
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resize: true,
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maxHeight: "50vh"
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});
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}
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drawLegend() {
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if (!this.isComparison) {
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this.legendG.append("text").attr("text-anchor", "left").style("font-weight", "bold").text("Overall Score").attr("transform", `translate(0, -5)`);
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196
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this.addLegendItem("A", "More than 75% of possible scorable items", 1);
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this.addLegendItem("B", "50-75% of possible scorable items", 2);
|
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this.addLegendItem("C", "Less than 50% of possible scorable items", 3);
|
|
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|
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}
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|
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this.addFilterLegend();
|
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201
|
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}
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|
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|
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};
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|
203
|
-
async function getPlotConfig(opts, app, _activeCohort) {
|
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try {
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205
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-
const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
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|
206
|
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const defaults = await getProfilePlotConfig(activeCohort, app, opts);
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207
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if (!defaults) throw "default config not found in termdbConfig.plotConfigByCohort.profilePolar2";
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208
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const settings = getDefaultProfilePlotSettings();
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defaults.settings = { profilePolar2: settings };
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const config = copyMerge(structuredClone(defaults), opts);
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componentInit,
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getPlotConfig,
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profilePolar2Init
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import {
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getDefaultProfilePlotSettings,
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getProfilePlotConfig,
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profilePlot
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fillTermWrapper,
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fillTwLst
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copyMerge,
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getCompInit
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axisBottom,
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linear
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roundValueAuto
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// plots/profile/profileForms.ts
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var YES_NO_TAB = "Yes/No Barchart";
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var IMPRESSIONS_TAB = "Impressions";
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var LIKERT_TAB = "Likert Scale";
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var profileForms = class extends profilePlot {
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static {
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}
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constructor(opts) {
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super(opts, "profileForms");
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this.opts = opts;
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this.id2SCTW = {};
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}
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async init(appState) {
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super.init(appState);
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const config = structuredClone(appState.plots.find((p) => p.id === this.id));
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this.twLst = await this.app.vocabApi.getMultivalueTWs({ parent_id: config.tw.term.id });
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const settings = config.settings.profileForms;
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this.tabs = [];
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for (const plot of config.options) {
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const tws = this.twLst.filter((tw) => tw.term.subtype == plot.subtype);
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const tab = {
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callback: () => {
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};
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if (plot.hasSC) {
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this.id2SCTW[plot.name] = {};
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if (tw.term.subtype != plot.subtype) continue;
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const scTermId = tw.term.id.replace(/^POC/, "");
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const scTW = { id: scTermId };
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await fillTermWrapper(scTW, this.app.vocabApi);
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this.id2SCTW[plot.name][scTermId] = scTW;
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}
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this.twLst.push(...Object.values(this.id2SCTW[plot.name]));
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}
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this.tabs.push(tab);
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|
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}
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const rightDiv = this.dom.rightDiv;
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const topDiv = rightDiv.append("div");
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const domainDiv = topDiv.append("div").style("padding-bottom", "10px").style("font-weight", "bold");
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const headerDiv = rightDiv.append("div").style("padding-bottom", "10px");
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if (this.tabs.length > 1)
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await new Tabs({
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holder: topDiv,
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tabsPosition: "horizontal",
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tabs: this.tabs
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}).main();
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const shift = 690;
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const shiftTop = 50;
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const width = settings.svgw + shift + 500;
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const svg = rightDiv.style("padding", "20px").append("svg").attr("width", width);
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svg.append("defs").append("pattern").attr("id", `${this.id}_diagonalHatch`).attr("patternUnits", "userSpaceOnUse").attr("width", 4).attr("height", 4).append("path").attr("d", "M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2").attr("stroke-width", 1).attr("stroke", "gray");
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this.shiftTop = shiftTop;
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this.shift = shift;
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const mainG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
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const gridG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
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this.filterG = svg.append("g").attr("transform", `translate(${shift + settings.svgw + 60}, ${shiftTop + 40})`);
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this.legendG = svg.append("g");
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const xAxisG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop / 2})`);
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this.dom = copyMerge(this.dom, {
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svg,
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headerDiv,
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mainG,
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gridG,
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legendG: this.legendG,
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xAxisG,
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domainDiv
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});
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}
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async main() {
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this.dom.loadingDiv.style("display", "");
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try {
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await super.main();
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if (this.tabs.length == 0) return;
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const activeTab = this.state.config.activeTab || this.tabs[0].label;
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this.activePlot = this.state.config.options.find((p) => p.name == activeTab);
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this.scoreTerms = this.twLst.filter((tw) => tw.term.subtype == this.activePlot.subtype);
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if (this.activePlot.hasSC) {
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this.scScoreTerms = Object.values(this.id2SCTW[this.activePlot.name]);
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}
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const parents = this.config.tw.term.id.split("__");
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this.module = parents[1];
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|
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const domain = parents.slice(1).join(" / ");
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this.dom.domainDiv.text(domain);
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this.categories = /* @__PURE__ */ new Set();
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this.dom.mainG.selectAll("*").remove();
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this.dom.gridG.selectAll("*").remove();
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this.dom.xAxisG.selectAll("*").remove();
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this.dom.legendG.selectAll("*").remove();
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await this.setControls();
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|
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this.renderPlot();
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|
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this.filterG.selectAll("*").remove();
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|
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this.addFilterLegend();
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|
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} finally {
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|
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this.dom.loadingDiv.style("display", "none");
|
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|
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}
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|
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}
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|
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renderPlot() {
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|
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try {
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|
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this.dom.headerDiv.style("display", "none");
|
|
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|
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switch (this.activePlot.name) {
|
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|
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case IMPRESSIONS_TAB:
|
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|
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this.renderImpressions();
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|
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|
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break;
|
|
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|
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case LIKERT_TAB:
|
|
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this.renderLikert();
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|
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break;
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|
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|
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case YES_NO_TAB:
|
|
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|
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this.renderYesNo();
|
|
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|
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}
|
|
169
|
-
} catch (e) {
|
|
170
|
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console.error("Error rendering profile forms plot:", e);
|
|
171
|
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throw e;
|
|
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|
-
}
|
|
173
|
-
}
|
|
174
|
-
renderImpressions() {
|
|
175
|
-
}
|
|
176
|
-
renderLikert() {
|
|
177
|
-
this.dom.headerDiv.style("display", "block");
|
|
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|
-
this.dom.headerDiv.selectAll("*").remove();
|
|
179
|
-
let y = 0;
|
|
180
|
-
const step = 30;
|
|
181
|
-
const height = (this.scoreTerms.length + 2) * step;
|
|
182
|
-
this.dom.svg.attr("height", height + 120);
|
|
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|
-
this.categories = /* @__PURE__ */ new Set();
|
|
184
|
-
const labelPadding = 80;
|
|
185
|
-
const tempG = this.dom.svg.append("g").style("visibility", "hidden");
|
|
186
|
-
let maxLabelWidth = 0;
|
|
187
|
-
for (const tw of this.scoreTerms) {
|
|
188
|
-
if (tw.term.type != "multivalue") continue;
|
|
189
|
-
const text = getText(tw.term.details || tw.term.name);
|
|
190
|
-
const tempText = tempG.append("text").style("font-size", "0.85em").text(text);
|
|
191
|
-
const w = tempText.node().getBBox().width;
|
|
192
|
-
if (w > maxLabelWidth) maxLabelWidth = w;
|
|
193
|
-
}
|
|
194
|
-
tempG.remove();
|
|
195
|
-
const shift = maxLabelWidth + labelPadding;
|
|
196
|
-
this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
197
|
-
this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
198
|
-
this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
|
|
199
|
-
this.dom.svg.attr("width", shift + this.settings.svgw + 500);
|
|
200
|
-
this.shift = shift;
|
|
201
|
-
for (const tw of this.scoreTerms) {
|
|
202
|
-
if (tw.term.type != "multivalue") continue;
|
|
203
|
-
const dict = this.getPercentageDict(tw);
|
|
204
|
-
this.renderLikertBar(dict, y, 25, tw);
|
|
205
|
-
y += step;
|
|
206
|
-
}
|
|
207
|
-
y += step * 2;
|
|
208
|
-
const width = this.settings.svgw;
|
|
209
|
-
const posScale = linear().domain([0, 100]).range([shift, shift + width]);
|
|
210
|
-
const posAxisBottom = axisBottom(posScale).ticks(10).tickFormat((d) => d + "%");
|
|
211
|
-
const scaleG = this.dom.svg.append("g").attr("transform", `translate(0, ${y})`);
|
|
212
|
-
posAxisBottom(scaleG);
|
|
213
|
-
const likertLegendOrder = [
|
|
214
|
-
"I Don't Know",
|
|
215
|
-
"Do Not Know",
|
|
216
|
-
"No",
|
|
217
|
-
"Not Available",
|
|
218
|
-
"Not Applicable For My Role",
|
|
219
|
-
"Almost Never",
|
|
220
|
-
"Infrequently",
|
|
221
|
-
"Sometimes",
|
|
222
|
-
"Frequently",
|
|
223
|
-
"Almost Always"
|
|
224
|
-
];
|
|
225
|
-
const catUpperSet = new Set([...this.categories].map((c) => c.toUpperCase()));
|
|
226
|
-
const orderedCategories = likertLegendOrder.filter((c) => catUpperSet.has(c.toUpperCase()));
|
|
227
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
228
|
-
const legendG = this.dom.legendG.attr("transform", `translate(0, ${y + 50})`);
|
|
229
|
-
const rectSize = 14;
|
|
230
|
-
const rectTextGap = 5;
|
|
231
|
-
const itemGap = 12;
|
|
232
|
-
let x = 0;
|
|
233
|
-
for (const category of orderedCategories) {
|
|
234
|
-
const key = category.toUpperCase();
|
|
235
|
-
const color = colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][category];
|
|
236
|
-
const itemG = legendG.append("g").attr("transform", `translate(${x}, 0)`);
|
|
237
|
-
itemG.append("rect").attr("width", rectSize).attr("height", rectSize).attr("fill", color);
|
|
238
|
-
const label = itemG.append("text").attr("x", rectSize + rectTextGap).attr("y", rectSize / 2).attr("dominant-baseline", "central").style("font-size", "0.8em").text(category);
|
|
239
|
-
x += rectSize + rectTextGap + label.node().getBBox().width + itemGap;
|
|
240
|
-
}
|
|
241
|
-
}
|
|
242
|
-
renderYesNo() {
|
|
243
|
-
const step = 30;
|
|
244
|
-
const height = this.scoreTerms.length * step;
|
|
245
|
-
this.dom.svg.attr("height", height * 3 + 200);
|
|
246
|
-
const labelPadding = 50;
|
|
247
|
-
const tempG = this.dom.svg.append("g").style("visibility", "hidden");
|
|
248
|
-
let maxLabelWidth = 0;
|
|
249
|
-
for (const tw of this.scoreTerms) {
|
|
250
|
-
const text2 = getText(tw.term.name);
|
|
251
|
-
const tempText = tempG.append("text").style("font-size", "0.8em").text(text2);
|
|
252
|
-
const w = tempText.node().getBBox().width;
|
|
253
|
-
if (w > maxLabelWidth) maxLabelWidth = w;
|
|
254
|
-
}
|
|
255
|
-
tempG.remove();
|
|
256
|
-
const shift = maxLabelWidth + labelPadding;
|
|
257
|
-
this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
258
|
-
this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
|
|
259
|
-
this.dom.xAxisG.attr("transform", `translate(${shift}, ${this.shiftTop / 2})`);
|
|
260
|
-
this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
|
|
261
|
-
this.dom.svg.attr("width", shift + this.settings.svgw + 500);
|
|
262
|
-
this.shift = shift;
|
|
263
|
-
this.xAxisScale = linear().domain([0, 100]).range([0, this.settings.svgw]);
|
|
264
|
-
this.dom.xAxisG.call(axisTop(this.xAxisScale));
|
|
265
|
-
let y = 0;
|
|
266
|
-
let showSCBar = false;
|
|
267
|
-
for (const tw of this.scoreTerms) {
|
|
268
|
-
const percents = this.getPercentageDict(tw);
|
|
269
|
-
const scTermId = tw.term.id.replace(/^POC/, "");
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270
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-
const scTW = this.id2SCTW[this.activePlot.name][scTermId];
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271
|
-
const scPercents = this.getPercentageDict(scTW);
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272
|
-
const scPercentKeys = Object.keys(scPercents).filter((k) => scPercents[k] > 0).map((k) => scTW.term.values?.[k]?.label || k);
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273
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-
const scTotal = Object.values(scPercents).reduce((a, b) => a + b, 0);
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274
|
-
showSCBar = scTotal > 1;
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275
|
-
this.renderYesNoBar(percents, y, step, scTotal == 1 ? scPercentKeys : []);
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276
|
-
if (showSCBar) {
|
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277
|
-
y += step + 10;
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278
|
-
this.renderYesNoBar(scPercents, y, step, []);
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279
|
-
this.dom.mainG.append("text").text("SC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", y + step * 0.6);
|
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280
|
-
}
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281
|
-
this.dom.mainG.append("text").text("POC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", showSCBar ? y - step + 0.35 * step : y + step * 0.6);
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282
|
-
this.dom.mainG.append("text").attr("x", -this.shift).attr("y", showSCBar ? y : y + step / 2).text(getText(tw.term.name)).attr("font-size", "0.8em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
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283
|
-
y += step + 40;
|
|
284
|
-
}
|
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285
|
-
this.renderLines(y - 20);
|
|
286
|
-
if (showSCBar) this.dom.legendG.attr("transform", `translate(${550}, ${30 + this.settings.svgh})`);
|
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287
|
-
else this.dom.legendG.attr("transform", `translate(${550}, ${this.settings.svgh * 0.8})`);
|
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288
|
-
let x = 0;
|
|
289
|
-
for (const category of this.activePlot.categories) {
|
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290
|
-
x += this.drawLegendRect(x, 0, category.name, this.dom.legendG, true);
|
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291
|
-
}
|
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292
|
-
let text = this.dom.legendG.append("text").attr("x", x + 80).attr("y", 18);
|
|
293
|
-
text.append("tspan").style("font-weight", "bold").text("SC:");
|
|
294
|
-
text.append("tspan").text("Site Coordinator");
|
|
295
|
-
text = this.dom.legendG.append("text").attr("x", x + 250).attr("y", 18);
|
|
296
|
-
text.append("tspan").style("font-weight", "bold").text("POC:");
|
|
297
|
-
text.append("tspan").text("Point of Care Staff");
|
|
298
|
-
}
|
|
299
|
-
onMouseOver(event) {
|
|
300
|
-
if (event.target.tagName == "rect") {
|
|
301
|
-
const path = event.target;
|
|
302
|
-
const d = path.__data__;
|
|
303
|
-
if (!d?.value) return this.onMouseOut(event);
|
|
304
|
-
const menu = this.tip.clear();
|
|
305
|
-
const percent = roundValueAuto(d.value, true, 1);
|
|
306
|
-
const row = menu.d.append("div").style("display", "flex").style("align-items", "center").style("gap", "5px");
|
|
307
|
-
if (d.color)
|
|
308
|
-
row.append("div").style("width", "12px").style("height", "12px").style("background-color", d.color).style("flex-shrink", "0");
|
|
309
|
-
row.append("span").text(`${d.key}: ${percent}%`);
|
|
310
|
-
menu.show(event.clientX, event.clientY, true, true);
|
|
311
|
-
} else this.onMouseOut(event);
|
|
312
|
-
}
|
|
313
|
-
getColor(key) {
|
|
314
|
-
return key == "Yes" ? this.activePlot.color : key == "No" ? "#aaa" : `url(#${this.id}_diagonalHatch)`;
|
|
315
|
-
}
|
|
316
|
-
renderLikertBar(dict, y, height, tw) {
|
|
317
|
-
const itemG = this.dom.mainG.append("g");
|
|
318
|
-
let total = 0;
|
|
319
|
-
for (const key in dict) total += dict[key];
|
|
320
|
-
const key2num = {};
|
|
321
|
-
for (const key in tw.term.values) {
|
|
322
|
-
const category = tw.term.values[key].label.toUpperCase();
|
|
323
|
-
key2num[category] = Number(key);
|
|
324
|
-
}
|
|
325
|
-
let x = 0;
|
|
326
|
-
const keys = Object.keys(dict).sort((a, b) => key2num[a.toUpperCase()] - key2num[b.toUpperCase()]);
|
|
327
|
-
for (const key of keys) {
|
|
328
|
-
this.categories.add(key);
|
|
329
|
-
const width = this.renderCategory(key, dict, itemG, x, height, total);
|
|
330
|
-
x += width;
|
|
331
|
-
}
|
|
332
|
-
const text = getText(tw.term.details || tw.term.name);
|
|
333
|
-
const textG = this.dom.svg.append("g").attr("transform", `translate(0, ${y + this.shiftTop})`);
|
|
334
|
-
textG.append("text").text(text).attr("y", height * 2 / 3).style("font-size", "0.85em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
|
|
335
|
-
itemG.attr("transform", `translate(0, ${y})`);
|
|
336
|
-
}
|
|
337
|
-
renderCategory(category, dict, itemG, x, height, total, showPercent = false) {
|
|
338
|
-
const key = category.toUpperCase();
|
|
339
|
-
const module = this.module;
|
|
340
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
341
|
-
const color = colorMap[module][key] || colorMap["*"][key];
|
|
342
|
-
const entry = Object.entries(dict).find((k) => k[0].toUpperCase() == key);
|
|
343
|
-
if (!entry) return 0;
|
|
344
|
-
const value = entry[1];
|
|
345
|
-
this.categories.add(category);
|
|
346
|
-
const percent = value / total * 100;
|
|
347
|
-
const width = percent / 100 * this.settings.svgw;
|
|
348
|
-
itemG.append("rect").attr("x", x).attr("width", width).attr("height", height).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("fill", color).datum({ key: category, value: percent, color }).on("mouseover", (event) => this.onMouseOver(event));
|
|
349
|
-
if (showPercent)
|
|
350
|
-
itemG.append("text").text(`${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.8em").attr("x", x + width + 10).attr("y", height * 0.6);
|
|
351
|
-
return width;
|
|
352
|
-
}
|
|
353
|
-
renderYesNoBar(percents, y, height, scPercentKeys) {
|
|
354
|
-
const percentsOrdered = Object.keys(percents).sort((a, b) => -a.localeCompare(b));
|
|
355
|
-
const total = Object.values(percents).reduce((a, b) => a + b, 0);
|
|
356
|
-
let x = 0;
|
|
357
|
-
for (const key of percentsOrdered) {
|
|
358
|
-
const color = this.getColor(key);
|
|
359
|
-
const value = percents[key];
|
|
360
|
-
const width = value / total * this.settings.svgw;
|
|
361
|
-
const percent = value / total * 100;
|
|
362
|
-
this.dom.mainG.append("rect").attr("x", x).attr("y", y).attr("width", width).attr("height", height).attr("stroke", "gray").attr("fill", color).datum({ key, value: percent, color });
|
|
363
|
-
if (scPercentKeys.includes(key)) {
|
|
364
|
-
const arrowX = x + width / 2;
|
|
365
|
-
const arrowSize = 6;
|
|
366
|
-
this.dom.mainG.append("polygon").attr(
|
|
367
|
-
"points",
|
|
368
|
-
`${arrowX},${y} ${arrowX - arrowSize},${y - arrowSize * 1.5} ${arrowX + arrowSize},${y - arrowSize * 1.5}`
|
|
369
|
-
).attr("fill", "#c0392b").attr("pointer-events", "none");
|
|
370
|
-
this.dom.mainG.append("text").text(`SC ${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.7em").style("fill", "#c0392b").attr("font-weight", "bold").attr("text-anchor", "middle").attr("x", arrowX).attr("y", y - arrowSize * 1.5 - 3).attr("pointer-events", "none");
|
|
371
|
-
}
|
|
372
|
-
x += width;
|
|
373
|
-
}
|
|
374
|
-
}
|
|
375
|
-
renderLines(y) {
|
|
376
|
-
const width = this.settings.svgw;
|
|
377
|
-
const color = "lightgray";
|
|
378
|
-
const opacity = 0.5;
|
|
379
|
-
const bins = 4;
|
|
380
|
-
const size = width / bins;
|
|
381
|
-
let x;
|
|
382
|
-
const gridG = this.dom.gridG;
|
|
383
|
-
for (let i = 0; i <= bins; i++) {
|
|
384
|
-
x = i * size;
|
|
385
|
-
gridG.append("line").attr("x1", x).attr("x2", x).attr("y1", 0).attr("y2", y).style("stroke", color).style("stroke-opacity", opacity).style("stroke-dasharray", "5, 5");
|
|
386
|
-
}
|
|
387
|
-
}
|
|
388
|
-
drawLegendRect(x, y, text, legendG, isYesNo = false) {
|
|
389
|
-
const key = text.toUpperCase();
|
|
390
|
-
const colorMap = this.state.termdbConfig.colorMap;
|
|
391
|
-
const color = isYesNo ? this.getColor(text) : colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][text];
|
|
392
|
-
const size = 20;
|
|
393
|
-
const gap = 15;
|
|
394
|
-
const itemG = legendG.append("g").attr("transform", `translate(${x}, ${y})`);
|
|
395
|
-
itemG.append("rect").attr("x", 0).attr("y", 0).attr("width", size).attr("height", size).attr("fill", color).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("pointer-events", "none");
|
|
396
|
-
const label = itemG.append("text").attr("transform", `translate(${size + gap}, ${size / 2})`).attr("dominant-baseline", "central").style("font-size", "0.85em").text(text);
|
|
397
|
-
const labelWidth = label.node().getBBox().width;
|
|
398
|
-
return size + gap + labelWidth + gap;
|
|
399
|
-
}
|
|
400
|
-
showText(event, text, size = 110) {
|
|
401
|
-
if (text.length <= size) return;
|
|
402
|
-
const menu = this.tip.clear();
|
|
403
|
-
menu.d.style("padding", "5px").text(text);
|
|
404
|
-
menu.showunder(event.target);
|
|
405
|
-
}
|
|
406
|
-
getPercentageDict(tw) {
|
|
407
|
-
return this.data.term2Score[tw.term.id];
|
|
408
|
-
}
|
|
409
|
-
};
|
|
410
|
-
async function getPlotConfig(opts, app, _activeCohort) {
|
|
411
|
-
const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
|
|
412
|
-
const formsConfig = await getProfilePlotConfig(activeCohort, app, opts);
|
|
413
|
-
let config = formsConfig;
|
|
414
|
-
config.settings = getDefaultProfileFormsSettings();
|
|
415
|
-
config.headerTitle = "Templates: Visualization tools to provide insights and assist in leveraging data";
|
|
416
|
-
config = copyMerge(structuredClone(config), opts);
|
|
417
|
-
for (const plot of config.options) {
|
|
418
|
-
if (plot.terms) await fillTwLst(plot.terms, app.vocabApi);
|
|
419
|
-
}
|
|
420
|
-
return config;
|
|
421
|
-
}
|
|
422
|
-
function getDefaultProfileFormsSettings() {
|
|
423
|
-
const settings = {
|
|
424
|
-
controls: {
|
|
425
|
-
isOpen: false
|
|
426
|
-
},
|
|
427
|
-
profileForms: { svgw: 420, svgh: 480 }
|
|
428
|
-
};
|
|
429
|
-
const profilePlotSettings = getDefaultProfilePlotSettings();
|
|
430
|
-
settings.profileForms = copyMerge(settings.profileForms, profilePlotSettings);
|
|
431
|
-
return settings;
|
|
432
|
-
}
|
|
433
|
-
var profileFormsInit = getCompInit(profileForms);
|
|
434
|
-
var componentInit = profileFormsInit;
|
|
435
|
-
function getText(name, size = 110) {
|
|
436
|
-
if (name.length > size) name = name.slice(0, size) + "...";
|
|
437
|
-
return name;
|
|
438
|
-
}
|
|
439
|
-
export {
|
|
440
|
-
componentInit,
|
|
441
|
-
getDefaultProfileFormsSettings,
|
|
442
|
-
getPlotConfig,
|
|
443
|
-
profileForms,
|
|
444
|
-
profileFormsInit
|
|
445
|
-
};
|
|
446
|
-
//# sourceMappingURL=profileForms-RS4GEZZV.js.map
|