@sjcrh/proteinpaint-client 2.196.0 → 2.197.0

package/dist/barchart.integration.spec-H4WGHQ7R.js

@@ -1,2196 +0,0 @@
-import {
-  getCategoricalTermcollectionTw,
-  getCategoryGroupsetting,
-  getGeneVariantTw,
-  getGenesetMutTw,
-  getScctTw
-} from "./chunk-LWEGSYDD.js";
-import {
-  termjson
-} from "./chunk-DHPLHIVP.js";
-import {
-  Locator,
-  detectGte,
-  detectLst,
-  detectOne
-} from "./chunk-ECIBJXFT.js";
-import {
-  getRunPp,
-  rideInit
-} from "./chunk-OF5FE6GT.js";
-import {
-  require_tape
-} from "./chunk-TUMA63WX.js";
-import "./chunk-WQCQWUUP.js";
-import "./chunk-7D3WX34I.js";
-import "./chunk-PU2Q4SZR.js";
-import "./chunk-QMXCK4Y5.js";
-import "./chunk-PRZWSBMA.js";
-import "./chunk-GE4NJDV4.js";
-import "./chunk-MKAF2BHB.js";
-import "./chunk-WKNI3HRQ.js";
-import "./chunk-53JJ7SXN.js";
-import "./chunk-CDJAHMAN.js";
-import {
-  getFilterItemByTag,
-  hideCategory
-} from "./chunk-WY2PGUVX.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-MBUQ34CF.js";
-import "./chunk-HYOEWQ5P.js";
-import "./chunk-HBW42TDT.js";
-import "./chunk-LQJMCE7G.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-IIT367QZ.js";
-import "./chunk-RZGEKL77.js";
-import "./chunk-OVSKJROY.js";
-import "./chunk-A3URBFXN.js";
-import "./chunk-LYVLF6HO.js";
-import "./chunk-7IYJZZQI.js";
-import "./chunk-M3J4MINX.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-I73KUUYG.js";
-import "./chunk-NNFAUP2I.js";
-import "./chunk-7KRS7L4U.js";
-import "./chunk-BKPDYW5T.js";
-import "./chunk-JNITUVXP.js";
-import "./chunk-TJYRBEBK.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-VQZ2Z5YU.js";
-import "./chunk-SOTB4FRE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-DQC5FFGV.js";
-import {
-  __toESM
-} from "./chunk-HFNDKYVF.js";
-
-// plots/test/barchart.integration.spec.js
-var import_tape = __toESM(require_tape(), 1);
-
-// termdb/test/vocabData.js
-var terms = [
-  {
-    id: "a",
-    name: "AAA",
-    parent_id: null,
-    included_types: ["categorical", "integer", "float", "condition", "survival"],
-    child_types: ["categorical", "integer", "float", "condition", "survival"]
-  },
-  {
-    id: "b",
-    name: "BBB",
-    parent_id: null,
-    included_types: ["categorical", "integer", "float", "condition", "survival"],
-    child_types: ["categorical", "integer", "float", "condition", "survival"]
-  },
-  {
-    type: "categorical",
-    id: "c",
-    name: "CCC",
-    parent_id: "a",
-    isleaf: true,
-    groupsetting: {
-      disabled: true
-    },
-    values: {
-      1: { label: "Yes" },
-      0: { label: "No" }
-    },
-    included_types: ["categorical"],
-    child_types: []
-  },
-  {
-    type: "float",
-    id: "d",
-    name: "DDD",
-    parent_id: "a",
-    isleaf: true,
-    bins: {
-      default: {
-        type: "regular-bin",
-        bin_size: 0.2,
-        stopinclusive: true,
-        first_bin: { startunbounded: true, stop: 0.2, stopinclusive: true }
-      },
-      less: {
-        type: "regular-bin",
-        bin_size: 0.4,
-        stopinclusive: true,
-        first_bin: { startunbounded: true, stop: 0.2, stopinclusive: true }
-      }
-    },
-    included_types: ["float"],
-    child_types: []
-  },
-  {
-    type: "condition",
-    id: "e",
-    name: "EEE",
-    parent_id: "a",
-    isleaf: true,
-    groupsetting: {
-      disabled: true
-    },
-    included_types: ["condition"],
-    child_types: []
-  },
-  {
-    type: "categorical",
-    id: "f",
-    name: "FFF",
-    parent_id: "b",
-    isleaf: true,
-    groupsetting: {
-      disabled: true
-    },
-    values: {
-      1: { label: "Yes" },
-      0: { label: "No" }
-    },
-    included_types: ["categorical"],
-    child_types: []
-  },
-  {
-    type: "categorical",
-    id: "g",
-    name: "CCC",
-    parent_id: "ab",
-    isleaf: true,
-    groupsetting: {
-      disabled: true
-    },
-    values: {
-      1: { label: "Yes" },
-      0: { label: "No" }
-    },
-    included_types: ["categorical"],
-    child_types: []
-  },
-  {
-    type: "survival",
-    id: "s",
-    name: "Survival term",
-    isleaf: true,
-    values: {
-      1: { label: "Deceased" },
-      0: { label: "Alive" }
-    }
-  },
-  {
-    type: "termCollection",
-    name: "age percentages",
-    termlst: [{ id: "agedx" }, { id: "a_death" }, { id: "a_ndi" }, { id: "agelastvisit" }],
-    numerators: ["agedx"]
-  }
-];
-var vocab = JSON.stringify({
-  route: null,
-  terms,
-  sampleannotation: {
-    1: {
-      c: 1,
-      d: 0.1
-    },
-    2: {
-      c: 0,
-      d: 0.5
-    },
-    3: {
-      c: 1,
-      d: 0.8
-    },
-    4: {
-      c: 1,
-      d: 0.2
-    },
-    5: {
-      c: 0,
-      d: 0.4
-    },
-    6: {
-      c: 1,
-      d: 0.3
-    },
-    7: {
-      c: 0,
-      d: 0.5
-    },
-    8: {
-      c: 1,
-      d: 0.9
-    },
-    9: {
-      c: 0,
-      d: 0.05
-    },
-    10: {
-      c: 1,
-      d: 1.1
-    }
-  }
-});
-
-// plots/test/barchart.integration.spec.js
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- plots/barchart -***-");
-  test.end();
-});
-(0, import_tape.default)("term1=categorical", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "diaggrp"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    testBarCount(barchart);
-    testAxisDimension(barchart);
-    testAxisTitle(barchart);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  let barDiv;
-  function testBarCount(barchart) {
-    barDiv = barchart.Inner.dom.barDiv;
-    const minBars = 5;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} Diagnosis Group bars`);
-    test.equal(numBars, numOverlays, "should have equal numbers of bars and overlays");
-  }
-  function testAxisDimension(barchart) {
-    const xAxis = barDiv.select(".sjpcb-bar-chart-x-axis").node();
-    const seriesG = barDiv.select(".bars-series").node();
-    test.true(xAxis.getBBox().width >= seriesG.getBBox().width, "x-axis width should be >= series width");
-  }
-  function testAxisTitle(barchart) {
-    const chartTitle = barDiv.select('[data-testid="sjpp-massbarchart-horizontal-charttitle"]');
-    test.equal(chartTitle.text(), "# of samples (n=60)", "sample type of barchart should be samples");
-  }
-});
-(0, import_tape.default)("term1=categorical (no values)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "diaggrp_novalues"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    testTw(barchart);
-    testBarCount(barchart);
-    testAxisDimension(barchart);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testTw(barchart) {
-    const tw = barchart.Inner.config.term;
-    test.ok(tw.term.values && typeof tw.term.values == "object", "term.values{} should be an object");
-    test.ok(Array.isArray(tw.term.categories.lst), "term.categories.lst[] should be an array");
-    test.equal(tw.term.categories.lst.length, 7, "term.categories.lst[] should have 7 sample counts");
-  }
-  let barDiv;
-  function testBarCount(barchart) {
-    barDiv = barchart.Inner.dom.barDiv;
-    const minBars = 5;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} Diagnosis Group bars`);
-    test.equal(numBars, numOverlays, "should have equal numbers of bars and overlays");
-  }
-  function testAxisDimension(barchart) {
-    const xAxis = barDiv.select(".sjpcb-bar-chart-x-axis").node();
-    const seriesG = barDiv.select(".bars-series").node();
-    test.true(xAxis.getBBox().width >= seriesG.getBBox().width, "x-axis width should be >= series width");
-  }
-});
-(0, import_tape.default)("term1=categorical (patient-level)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "genetic_race"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    testBarCount(barchart);
-    testAxisDimension(barchart);
-    testAxisTitle(barchart);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  let barDiv;
-  function testBarCount(barchart) {
-    barDiv = barchart.Inner.dom.barDiv;
-    const minBars = 2;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} Diagnosis Group bars`);
-    test.equal(numBars, numOverlays, "should have equal numbers of bars and overlays");
-  }
-  function testAxisDimension(barchart) {
-    const xAxis = barDiv.select(".sjpcb-bar-chart-x-axis").node();
-    const seriesG = barDiv.select(".bars-series").node();
-    test.true(xAxis.getBBox().width >= seriesG.getBBox().width, "x-axis width should be >= series width");
-  }
-  function testAxisTitle(barchart) {
-    const chartTitle = barDiv.select('[data-testid="sjpp-massbarchart-horizontal-charttitle"]');
-    test.equal(chartTitle.text(), "# of patients (n=62)", "sample type of barchart should be patients");
-  }
-});
-(0, import_tape.default)("term1=categorical (relapse-level)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "relapse_site"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    testBarCount(barchart);
-    testAxisDimension(barchart);
-    testAxisTitle(barchart);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  let barDiv;
-  function testBarCount(barchart) {
-    barDiv = barchart.Inner.dom.barDiv;
-    const minBars = 2;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} Diagnosis Group bars`);
-    test.equal(numBars, numOverlays, "should have equal numbers of bars and overlays");
-  }
-  function testAxisDimension(barchart) {
-    const xAxis = barDiv.select(".sjpcb-bar-chart-x-axis").node();
-    const seriesG = barDiv.select(".bars-series").node();
-    test.true(xAxis.getBBox().width >= seriesG.getBBox().width, "x-axis width should be >= series width");
-  }
-  function testAxisTitle(barchart) {
-    const chartTitle = barDiv.select('[data-testid="sjpp-massbarchart-horizontal-charttitle"]');
-    test.equal(chartTitle.text(), "# of relapse samples (n=10)", "sample type of barchart should be relapse samples");
-  }
-});
-(0, import_tape.default)("term1=termCollection categorical", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [{ chartType: "summary", childType: "barchart", term: getCategoricalTermcollectionTw() }]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    const barDiv = barchart.Inner.dom.barDiv;
-    testBarCount(barDiv);
-    testBarOrder(barDiv);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount(barDiv) {
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    test.equal(numBars, 3, "should render 3 bars, one per member term");
-  }
-  function testBarOrder(barDiv) {
-    const labelGs = barDiv.selectAll('[data-testid="sjpcb-bars-rowlabels"] g').nodes();
-    test.equal(labelGs.length, 3, "should have 3 row label elements");
-    if (labelGs.length < 2) return;
-    const yValues = labelGs.map((g) => {
-      const t = g.getAttribute("transform") || "";
-      const m = t.match(/translate\([^,]+,([^)]+)\)/);
-      return m ? parseFloat(m[1]) : 0;
-    });
-    test.ok(
-      yValues[0] < yValues[1] && yValues[1] < yValues[2],
-      "row label y positions should increase in termIds order (CNV < Fusion < Germline)"
-    );
-  }
-});
-(0, import_tape.default)("term1=categorical, term2=defaultbins", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(4);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "diaggrp" },
-          term2: { id: "agedx" }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    testOverlayOrder();
-    await triggerUncomputableOverlay(barchart);
-    clickLegendToHideOverlay(barchart);
-    await testHiddenOverlayData(barchart);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 5;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} Diagnosis Group bars`);
-    test.true(numOverlays > numBars, "number of overlays should be greater than bars");
-  }
-  function testOverlayOrder() {
-    const bars_grp = barDiv.selectAll(".bars-cell-grp");
-    const legend_rows = barDiv.selectAll(".legend-row");
-    let overlay_ordered = true;
-    const legend_ids = [];
-    legend_rows.each((d) => legend_ids.push(d.dataId));
-    bars_grp.each((d) => {
-      if (!overlay_ordered) return;
-      const bar_ids = d.visibleData.map((d2) => d2.dataId);
-      overlay_ordered = legend_ids.filter((id) => bar_ids.includes(id)).reduce((bool, id, i) => bool && bar_ids[i] === id, overlay_ordered);
-    });
-    test.true(overlay_ordered, "overlay order is same as legend");
-  }
-  async function triggerUncomputableOverlay(barchart) {
-    await detectLst({
-      target: barchart.Inner.dom.legendDiv.node(),
-      // avoid detecting legend entries for descriptive stats,
-      // term legend items have a corresponding icon as the first div,
-      // making the second div (even-numbered child) the relevant target/selector
-      selector: ".sjpp-htmlLegend:nth-child(even)",
-      count: 6,
-      matchAs: ">=",
-      trigger: () => {
-        barchart.Inner.app.dispatch({
-          type: "plot_edit",
-          id: "diaggrp",
-          config: {
-            term2: {
-              id: "aaclassic_5",
-              term: termjson["aaclassic_5"],
-              q: termjson["aaclassic_5"].bins.default
-            }
-          }
-        });
-      }
-    });
-  }
-  const legendDataId = "not exposed";
-  async function clickLegendToHideOverlay(barchart) {
-    const legendDiv = barchart.Inner.dom.legendDiv;
-    const item = legendDiv.selectAll(".sjpp-htmlLegend").filter((d) => d.dataId == legendDataId).node();
-    hideCategory(item.__data__, barchart.Inner, true);
-  }
-  async function testHiddenOverlayData(barchart) {
-    const legendDiv = barchart.Inner.dom.legendDiv;
-    const item = await detectLst({ elem: legendDiv.node(), selector: ".sjpp-hidden-legend-item", matchAs: ">=" });
-    test.equal(item.length, 1, "should hide a clicked uncomputable overlay legend");
-  }
-});
-(0, import_tape.default)("term0=defaultbins, term1=categorical", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "diaggrp" },
-          term0: { id: "agedx" }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testNumCharts
-      }
-    }
-  });
-  function testNumCharts(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numCharts = barDiv.selectAll(".pp-sbar-div").size();
-    test.true(numCharts > 2, "should have more than 2 charts by Age at Cancer Diagnosis");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=categorical, term2=categorical (patient-level)", function(test) {
-  test.timeoutAfter(5e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "diaggrp" },
-          term2: { id: "sex" }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 5;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} Diagnosis Group bars`);
-    test.true(numOverlays > numBars, "number of overlays should be greater than bars");
-  }
-});
-(0, import_tape.default)("term1=categorical (relapse-level), term2=categorical (patient-level)", function(test) {
-  test.timeoutAfter(5e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "relapse_site" },
-          term2: { id: "sex" }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    testAxisTitle();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 2;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} bars`);
-    test.true(numOverlays > numBars, "number of overlays should be greater than bars");
-  }
-  function testAxisTitle() {
-    const chartTitle = barDiv.select('[data-testid="sjpp-massbarchart-horizontal-charttitle"]');
-    test.equal(chartTitle.text(), "# of relapse samples (n=10)", "sample type of barchart should be relapse samples");
-  }
-});
-(0, import_tape.default)("term1=geneVariant with groups", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [{ chartType: "summary", childType: "barchart", term: getGeneVariantTw() }]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testNumCharts
-      }
-    }
-  });
-  function testNumCharts(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numCharts = barDiv.selectAll(".pp-sbar-div").size();
-    test.true(numCharts == 1, "Should have 1 chart from gene variant term");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=geneVariant, term2=geneVariant using region but not gene", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: getGeneVariantTw(),
-          term2: getGeneVariantTw(true)
-          // gives region but not gene
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testNumCharts
-      }
-    }
-  });
-  function testNumCharts(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numCharts = barDiv.selectAll(".pp-sbar-div").size();
-    test.true(numCharts == 1, "Should have 1 chart from gene variant term");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=geneVariant geneset with groups", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: getGenesetMutTw()
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testNumCharts
-      }
-    }
-  });
-  function testNumCharts(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numCharts = barDiv.selectAll(".pp-sbar-div").size();
-    test.true(numCharts == 1, "Should have 1 chart from gene variant gene set");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=categorical, term2=geneVariant", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "diaggrp" },
-          term2: { term: { type: "geneVariant", gene: "TP53" }, q: { type: "predefined-groupset" } }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testNumCharts
-      }
-    }
-  });
-  function testNumCharts(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numCharts = barDiv.selectAll(".pp-sbar-div").size();
-    test.true(numCharts == 1, "Should have 1 chart from gene variant term");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=categorical (patient-level), term2=geneVariant", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "genetic_race" },
-          term2: { term: { type: "geneVariant", gene: "TP53" }, q: { type: "predefined-groupset" } }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 2;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} bars`);
-    test.true(numOverlays > numBars, "number of overlays should be greater than bars");
-  }
-});
-(0, import_tape.default)("term1=geneExp, term2=geneVariant SKIPPED", function(test) {
-  test.timeoutAfter(1e4);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          term2: { term: { type: "geneVariant", gene: "TP53" }, q: { type: "predefined-groupset" } },
-          // must set geneExp q.mode=discrete to show barchart, otherwise it will become violin and not trigger provied postRender for barchart
-          term: { term: { type: "geneExpression", gene: "TP53" }, q: { mode: "discrete" } }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testNumCharts
-      }
-    }
-  });
-  function testNumCharts(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numCharts = barDiv.selectAll(".pp-sbar-div").size();
-    test.true(numCharts == 1, "Should have 1 chart from gene variant term");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=geneVariant, term2=geneExp", function(test) {
-  test.timeoutAfter(1e4);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: { term: { type: "geneVariant", gene: "TP53" }, q: { type: "predefined-groupset" } },
-          term2: { term: { type: "geneExpression", gene: "TP53" } }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testNumCharts
-      }
-    }
-  });
-  function testNumCharts(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numCharts = barDiv.selectAll(".pp-sbar-div").size();
-    test.true(numCharts == 1, "Should have 1 chart from gene variant term");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=geneExp", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: {
-            term: { type: "geneExpression", gene: "TP53", name: "TP53" },
-            q: { mode: "discrete" }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numBars = barDiv.selectAll("rect").size();
-    test.ok(
-      barDiv.selectAll(".pp-sbar-div").size() == 1 && barchart.Inner.config.term.bins.length && numBars,
-      "Should correctly render a bar chart for a gene expression term = TP53"
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=numeric term2=geneExp with default bins", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: { id: "agedx" },
-          term2: {
-            term: { type: "geneExpression", gene: "TP53" },
-            q: { mode: "discrete" }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numBarCalls = barDiv.selectAll(".bars-cell").size();
-    const tableRows = barDiv.selectAll("tr").size();
-    test.equal(
-      numBarCalls,
-      tableRows - 1,
-      "Should display the correct number of bars and table rows when overlaid by gene expression term."
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=geneExp, term2=categorical", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: {
-            term: { gene: "TP53", type: "geneExpression" },
-            q: { mode: "discrete" }
-          },
-          term2: {
-            id: "diaggrp"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numBarCells = await detectGte({ elem: barDiv.node(), selector: ".bars-cell", count: 22 });
-    const tableRows = await detectGte({ elem: barDiv.node(), selector: "tr", count: 22 });
-    test.ok(
-      // table has one row for header
-      numBarCells.length >= tableRows.length - 1,
-      "Should display the correct number of cells and table rows when gene expression term is overlaid by a categorical term."
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=geneExp, term2=categorical (patient-level)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: {
-            term: { gene: "TP53", type: "geneExpression" },
-            q: { mode: "discrete" }
-          },
-          term2: {
-            id: "sex"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 5;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} bars`);
-    test.true(numOverlays > numBars, "number of overlays should be greater than bars");
-  }
-});
-(0, import_tape.default)("term1=condition, term2=gene exp with default bins", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: {
-            id: "Hearing loss"
-          },
-          term2: {
-            term: { gene: "TP53", type: "geneExpression" },
-            q: { mode: "discrete" }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numBarCells = await detectGte({ elem: barDiv.node(), selector: ".bars-cell", count: 14 });
-    const tableRows = await detectGte({ elem: barDiv.node(), selector: "tr", count: 14 });
-    test.ok(
-      // table has one row for header
-      numBarCells.length >= tableRows.length - 1,
-      "Should display the correct number of cells and table rows when gene expression term is overlaid by a conditional term."
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=TP53 gene exp, term2=BCR gene exp, both terms with default bins", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: {
-            term: { gene: "TP53", type: "geneExpression" },
-            q: { mode: "discrete" }
-          },
-          term2: {
-            term: { gene: "BCR", type: "geneExpression" },
-            q: { mode: "discrete" }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numBarCells = await detectGte({ elem: barDiv.node(), selector: ".bars-cell", count: 27 });
-    const tableRows = await detectGte({ elem: barDiv.node(), selector: "tr", count: 28 });
-    test.ok(
-      numBarCells.length == tableRows.length - 1,
-      "Should display the correct number of cells and table rows when gene expression term is overlaid by a gene expression term."
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=categorical, term0=gene exp with default bins", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: {
-            id: "diaggrp"
-          },
-          term0: {
-            term: { gene: "TP53", name: "TP53", type: "geneExpression" },
-            q: { mode: "discrete" }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numBarchart = await detectGte({ elem: barDiv.node(), selector: ".pp-bars-svg", count: 8 });
-    test.equal(
-      numBarchart.length,
-      8,
-      "Should display the correct number of barcharts when a categorical term is overlaid by a gene expression term."
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("term1=scct", function(test) {
-  test.timeoutAfter(3e3);
-  const scctTw = getScctTw();
-  scctTw.term.sample.name = "UMAP";
-  runpp({
-    state: {
-      nav: { header_mode: "hidden" },
-      plots: [
-        {
-          chartType: "summary",
-          term: scctTw
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const count = 1;
-    const numBarchart = await detectGte({ elem: barDiv.node(), selector: ".pp-bars-svg", count });
-    test.equal(numBarchart.length, count, "Should display a barchart for a single cell cell type term.");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("series visibility - q.hiddenValues", function(test) {
-  test.timeoutAfter(5e3);
-  test.plan(2);
-  const hiddenValues = { 1: true };
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "sex",
-            q: {
-              hiddenValues
-            }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testHiddenValues
-      }
-    }
-  });
-  function testHiddenValues(barchart) {
-    const bar = barchart.Inner;
-    test.deepEqual(
-      bar.settings.exclude.cols.sort(),
-      Object.keys(hiddenValues).sort(),
-      "should have the correct number of hidden bars by q.hiddenValues"
-    );
-    test.equal(
-      bar.dom.holder.selectAll(".bars-cell").size(),
-      bar.settings.cols.length - bar.settings.exclude.cols.length,
-      "should render the correct number of visible bars"
-    );
-    if (test._ok) bar.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("series visibility - numeric", function(test) {
-  test.timeoutAfter(5e3);
-  runpp({
-    state: {
-      nav: { activeTab: 1 },
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "aaclassic_5" }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runNumericExcludedTests
-      }
-    }
-  });
-  function runNumericExcludedTests(barchart) {
-    rideInit({ arg: barchart, bus: barchart, eventType: "postRender.test" }).run(testHiddenByValuesAndOrder).use(triggerHiddenLegendClick, { wait: 800 }).to(testRevealedBar, { wait: 100 }).use(triggerMenuClickToHide, { wait: 100 }).to(testHiddenLegendDisplay, { wait: 600 }).done(test);
-  }
-  function testHiddenByValuesAndOrder(barchart) {
-    const bar = barchart.Inner;
-    const excluded = bar.settings.exclude.cols;
-    test.true(
-      excluded.length > 1 && excluded.length == Object.keys(bar.config.term.q.hiddenValues).length,
-      "should have the correct number of excluded numeric series by q.hiddenValues"
-    );
-    const foundHiddenLabels = bar.dom.legendDiv.selectAll(".sjpp-htmlLegend").filter((d) => d?.isHidden == true).nodes();
-    test.equal(
-      foundHiddenLabels.length + 1,
-      excluded.length,
-      "should display the correct number of hidden legend labels"
-    );
-    const barOrder = [...bar.dom.holder.node().querySelectorAll(".bars-cell-grp")].sort(
-      (a, b) => a.__data__.data[0].y - b.__data__.data[0].y
-    );
-    test.deepEqual(
-      barOrder.map((d) => d.__data__.seriesId),
-      ["<5000", "5000 to <10000", "10000 to <15000", "15000 to <20000", "20000 to <25000", "\u226525000"],
-      "should render the bars in the expected order"
-    );
-  }
-  let numHiddenLegendBeforeClick;
-  function triggerHiddenLegendClick(barchart) {
-    numHiddenLegendBeforeClick = barchart.Inner.settings.exclude.cols.length;
-    const node = barchart.Inner.dom.legendDiv.selectAll(".sjpp-htmlLegend").filter((d) => d?.isHidden == true).node();
-    hideCategory(node.__data__, barchart.Inner, false);
-  }
-  function testRevealedBar(barchart) {
-    const bar = barchart.Inner;
-    const excluded = bar.settings.exclude.cols;
-    test.equal(excluded.length, numHiddenLegendBeforeClick - 1, "should adjust the number of excluded series data");
-    const foundHiddenLabels = bar.dom.legendDiv.selectAll(".legend-row").filter((d) => d?.isHidden == true).nodes();
-    test.equal(
-      foundHiddenLabels.length + 1,
-      excluded.length,
-      "should adjust the number of hidden legend labels after clicking to reveal one"
-    );
-  }
-  function triggerMenuClickToHide(barchart) {
-    const node = barchart.Inner.dom.holder.selectAll(".bars-cell-grp").filter((d) => d.seriesId == "not exposed").node().dispatchEvent(new Event("click", { bubbles: true }));
-    barchart.Inner.app.tip.d.selectAll(".sja_menuoption").filter((d) => d.label.includes("Hide")).node().click();
-  }
-  function testHiddenLegendDisplay(barchart) {
-    test.equal(
-      barchart.Inner.dom.legendDiv.selectAll(".sjpp-htmlLegend").filter(function() {
-        return this.innerHTML.includes("not exposed");
-      }).size(),
-      1,
-      "should hide a special numeric value by menu click"
-    );
-  }
-});
-(0, import_tape.default)("series visibility and order - condition", function(test) {
-  test.timeoutAfter(5e3);
-  const conditionHiddenValues = { "1: Mild": 1 };
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "Arrhythmias",
-            q: {
-              hiddenValues: conditionHiddenValues
-            }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testConditionHiddenValues
-      }
-    }
-  });
-  function testConditionHiddenValues(barchart) {
-    const bar = barchart.Inner;
-    const excluded = bar.settings.exclude.cols;
-    test.equal(excluded.length, 1, "should have the correct number of hidden condition bars by q.hiddenValues");
-    const barOrder = [...bar.dom.holder.node().querySelectorAll(".bars-cell-grp")].sort(
-      (a, b) => a.__data__.data[0].y - b.__data__.data[0].y
-    );
-    test.deepEqual(
-      barOrder.map((d) => d.__data__.seriesId),
-      ["0: No condition", "2: Moderate", "3: Severe", "4: Life-threatening"],
-      "should render the bars in the expected order"
-    );
-    if (test._ok) bar.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("single barchart, categorical filter", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          in: 1,
-          join: "",
-          lst: [
-            {
-              type: "tvs",
-              tvs: { term: { id: "diaggrp" }, values: [{ key: "Acute lymphoblastic leukemia" }] }
-            }
-          ]
-        }
-      },
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "agedx"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 3;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} bars`);
-    test.true(numOverlays == numBars, "number of overlays should equal number of bars");
-  }
-});
-(0, import_tape.default)("single barchart, categorical filter (patient-level)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          in: 1,
-          join: "",
-          lst: [
-            {
-              type: "tvs",
-              tvs: { term: { id: "sex" }, values: [{ key: "2" }] }
-            }
-          ]
-        }
-      },
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "agedx"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 3;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} bars`);
-    test.true(numOverlays == numBars, "number of overlays should equal number of bars");
-  }
-});
-(0, import_tape.default)("single barchart (relapse-level), categorical filter (patient-level)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          in: 1,
-          join: "",
-          lst: [
-            {
-              type: "tvs",
-              tvs: { term: { id: "sex" }, values: [{ key: "2" }] }
-            }
-          ]
-        }
-      },
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "age_relapse"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 2;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} bars`);
-    test.true(numOverlays == numBars, "number of overlays should equal number of bars");
-  }
-});
-(0, import_tape.default)("single geneExp barchart, categorical filter (patient-level)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          in: 1,
-          join: "",
-          lst: [
-            {
-              type: "tvs",
-              tvs: { term: { id: "sex" }, values: [{ key: "2" }] }
-            }
-          ]
-        }
-      },
-      plots: [
-        {
-          chartType: "summary",
-          childType: "barchart",
-          term: {
-            term: { type: "geneExpression", gene: "TP53" },
-            q: { mode: "discrete" }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    await detectOne({ elem: barDiv.node(), selector: ".pp-bars-svg" });
-    testBarCount();
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount() {
-    const minBars = 3;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    const numOverlays = barDiv.selectAll(".bars-cell").size();
-    test.true(numBars > minBars, `should have more than ${minBars} bars`);
-    test.true(numOverlays == numBars, "number of overlays should equal number of bars");
-  }
-});
-(0, import_tape.default)("single barchart (patient-level), compound filter (patient-level + sample-level)", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          in: 1,
-          join: "and",
-          lst: [
-            {
-              type: "tvs",
-              tvs: { term: { id: "diaggrp" }, values: [{ key: "Wilms tumor" }] }
-            },
-            {
-              type: "tvs",
-              tvs: { term: { id: "sex" }, values: [{ key: "1" }] }
-            }
-          ]
-        }
-      },
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "sex"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    test.equal(
-      barchart.Inner.dom.holder.node().querySelectorAll(".bars-cell-grp").length,
-      1,
-      "should show one bar series"
-    );
-    test.equal(
-      barchart.Inner.dom.holder.node().querySelector(".bars-cell-grp").__data__.seriesId,
-      "1",
-      "should show one bar series that matches filter value"
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-import_tape.default.skip("genevariant barchart, compound filter", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          join: "or",
-          in: true,
-          lst: [
-            { type: "tvs", tvs: { term: { id: "sex" }, values: [{ key: "1" }] } },
-            {
-              type: "tvs",
-              tvs: { term: { gene: "TP53", name: "TP53", type: "geneExpression" }, ranges: [{ start: 1, stop: 10 }] }
-            }
-          ]
-        }
-      },
-      plots: [{ chartType: "summary", childType: "barchart", term: getGeneVariantTw() }]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    test.equal(
-      barchart.Inner.dom.holder.node().querySelectorAll(".bars-cell-grp").length,
-      2,
-      "should show two bar series"
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("single barchart, TP53 mutation dtTerm filter", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      termfilter: { filter: tp53dtTermFilter },
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "agedx" }
-          // since p53 mutation filter is applied at sample level, barchart term must be sample-level (agedx)
-          // patient-level term (sex) won't show data
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    test.equal(
-      barchart.Inner.dom.holder.node().querySelectorAll(".bars-cell-grp").length,
-      2,
-      "should show two bar series"
-    );
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("click non-group bar to add filter", function(test) {
-  test.timeoutAfter(8e3);
-  test.plan(3);
-  const termfilter = { filter: [] };
-  runpp({
-    state: {
-      nav: {
-        activeCohort: 0
-      },
-      termfilter,
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "agedx", term: termjson["agedx"], q: termjson["agedx"].bins.less },
-          term2: {
-            id: "Arrhythmias",
-            term: termjson["Arrhythmias"],
-            q: {
-              hiddenValues: {
-                "Unknown status": 1
-              }
-            }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    if (barDiv) return;
-    barchart.Inner.bus.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    triggerBarClick(barchart);
-    await detectLst({ elem: barchart.Inner.app.tip.d.node(), selector: ".sja_menuoption", count: 1, matchAs: ">=" });
-    triggerMenuClick(barchart);
-    await detectLst({
-      elem: barchart.Inner.app.Inner.dom.holder.node(),
-      selector: ".sja_filter_item",
-      count: 1,
-      matchAs: ">="
-    });
-    testTermValues(barchart);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  let clickedData, currData;
-  function triggerBarClick(barchart) {
-    const elem = barDiv.node().querySelector(".bars-cell").querySelector("rect");
-    clickedData = elem.__data__;
-    currData = barchart.Inner.currServerData;
-    elem.dispatchEvent(new Event("click", { bubbles: true }));
-  }
-  function triggerMenuClick(barchart) {
-    barchart.Inner.app.tip.d.selectAll(".sja_menuoption").filter((d) => d.label.includes("filter")).node().dispatchEvent(new Event("click", { bubbles: true }));
-  }
-  function testTermValues(barchart) {
-    const config = barchart.Inner.state.config;
-    const termfilter2 = barchart.Inner.app.Inner.state.termfilter;
-    const filter = getFilterItemByTag(termfilter2.filter, "filterUiRoot");
-    test.equal(
-      filter && filter.lst.length,
-      2,
-      "should create two tvslst filters when a numeric term overlay is clicked"
-    );
-    test.deepEqual(
-      filter.lst[0],
-      {
-        type: "tvs",
-        tvs: {
-          term: config.term.term,
-          ranges: [currData.refs.bins[1].find((d) => d.label == clickedData.seriesId)]
-        }
-      },
-      "should create a numeric term-value filter with a ranges key"
-    );
-    const q = JSON.parse(JSON.stringify(config.term2.q));
-    const t2ValKey = config.term2 && config.term2.term.values && Object.keys(config.term2.term.values).filter((key) => config.term2.term.values[key].label == clickedData.dataId)[0];
-    test.deepEqual(
-      filter.lst[1],
-      {
-        type: "tvs",
-        tvs: Object.assign(
-          {
-            term: config.term2.term,
-            values: [
-              {
-                key: t2ValKey !== void 0 ? t2ValKey : clickedData.dataId,
-                label: clickedData.dataId in config.term2.term.values ? config.term2.term.values[clickedData.dataId].label : clickedData.dataId
-              }
-            ]
-          },
-          q
-        )
-      },
-      "should create a condition term-value filter with bar_by_*, value_by_*, and other expected keys"
-    );
-  }
-});
-(0, import_tape.default)("click custom categorical group bar to add filter", function(test) {
-  test.timeoutAfter(3e3);
-  const termfilter = { filter: [] };
-  const tw = getCategoryGroupsetting();
-  runpp({
-    state: {
-      termfilter,
-      plots: [{ chartType: "barchart", term: tw }]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    if (barDiv) return;
-    barchart.Inner.bus.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    rideInit({ arg: barchart, bus: barchart, eventType: "postRender.test" }).run(triggerBarClick, { wait: 600 }).use(triggerMenuClick, { wait: 500 }).to(testTermValues, { wait: 100 }).done(test);
-  }
-  let clickedData;
-  function triggerBarClick(barchart) {
-    const elem = barDiv.node().querySelector(".bars-cell").querySelector("rect");
-    clickedData = elem.__data__;
-    elem.dispatchEvent(new Event("click", { bubbles: true }));
-  }
-  function triggerMenuClick(barchart) {
-    barchart.Inner.app.tip.d.selectAll(".sja_menuoption").filter((d) => d.label.includes("filter")).node().click();
-  }
-  function testTermValues(barchart) {
-    const config = barchart.Inner.state.config;
-    const currData = barchart.Inner.currServerData;
-    const termfilter2 = barchart.Inner.app.Inner.state.termfilter;
-    const filter = getFilterItemByTag(termfilter2.filter, "filterUiRoot");
-    test.equal(
-      filter && filter.lst.length,
-      1,
-      "should create one tvslst filters when a numeric term overlay is clicked"
-    );
-    test.deepEqual(
-      filter.lst[0],
-      {
-        type: "tvs",
-        tvs: {
-          term: {
-            name: "group",
-            type: "samplelst",
-            values: {
-              Group: {
-                key: "Group",
-                label: "Group",
-                list: [
-                  { sampleId: "41" },
-                  { sampleId: "42" },
-                  { sampleId: "43" },
-                  { sampleId: "44" },
-                  { sampleId: "45" },
-                  { sampleId: "46" },
-                  { sampleId: "47" },
-                  { sampleId: "48" },
-                  { sampleId: "49" },
-                  { sampleId: "50" },
-                  { sampleId: "51" },
-                  { sampleId: "52" },
-                  { sampleId: "53" },
-                  { sampleId: "54" },
-                  { sampleId: "55" },
-                  { sampleId: "56" },
-                  { sampleId: "57" },
-                  { sampleId: "58" },
-                  { sampleId: "59" },
-                  { sampleId: "60" },
-                  { sampleId: "61" },
-                  { sampleId: "63" },
-                  { sampleId: "64" },
-                  { sampleId: "65" },
-                  { sampleId: "66" },
-                  { sampleId: "67" },
-                  { sampleId: "68" },
-                  { sampleId: "69" },
-                  { sampleId: "70" },
-                  { sampleId: "71" },
-                  { sampleId: "72" },
-                  { sampleId: "73" },
-                  { sampleId: "74" },
-                  { sampleId: "75" },
-                  { sampleId: "76" },
-                  { sampleId: "77" },
-                  { sampleId: "78" },
-                  { sampleId: "80" },
-                  { sampleId: "93" }
-                ]
-              },
-              "Not in Group": {
-                key: "Not in Group",
-                label: "Not in Group",
-                color: "#aaa",
-                list: [
-                  { sampleId: "41" },
-                  { sampleId: "42" },
-                  { sampleId: "43" },
-                  { sampleId: "44" },
-                  { sampleId: "45" },
-                  { sampleId: "46" },
-                  { sampleId: "47" },
-                  { sampleId: "48" },
-                  { sampleId: "49" },
-                  { sampleId: "50" },
-                  { sampleId: "51" },
-                  { sampleId: "52" },
-                  { sampleId: "53" },
-                  { sampleId: "54" },
-                  { sampleId: "55" },
-                  { sampleId: "56" },
-                  { sampleId: "57" },
-                  { sampleId: "58" },
-                  { sampleId: "59" },
-                  { sampleId: "60" },
-                  { sampleId: "61" },
-                  { sampleId: "63" },
-                  { sampleId: "64" },
-                  { sampleId: "65" },
-                  { sampleId: "66" },
-                  { sampleId: "67" },
-                  { sampleId: "68" },
-                  { sampleId: "69" },
-                  { sampleId: "70" },
-                  { sampleId: "71" },
-                  { sampleId: "72" },
-                  { sampleId: "73" },
-                  { sampleId: "74" },
-                  { sampleId: "75" },
-                  { sampleId: "76" },
-                  { sampleId: "77" },
-                  { sampleId: "78" },
-                  { sampleId: "80" },
-                  { sampleId: "93" }
-                ],
-                in: false
-              }
-            }
-          }
-        },
-        noEdit: true
-      },
-      "should create a customset filter with the clicked group.values array"
-    );
-  }
-});
-(0, import_tape.default)("numeric exclude range", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: { id: "aaclassic_5", term: termjson["aaclassic_5"] },
-          term2: { id: "sex" }
-        }
-      ],
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          join: "and",
-          in: true,
-          lst: [
-            {
-              type: "tvs",
-              tag: "cohortFilter",
-              tvs: {
-                term: { id: "subcohort", type: "multivalue" },
-                values: [
-                  { key: "ABC", label: "ABC" }
-                  //{key:'XYZ',label:'XYZ'},
-                ]
-              }
-            },
-            {
-              type: "tvslst",
-              tag: "filterUiRoot",
-              join: "",
-              in: true,
-              lst: [
-                {
-                  type: "tvs",
-                  tvs: {
-                    term: termjson["aaclassic_5"],
-                    ranges: [{ start: 1e4, stopunbounded: true, startinclusive: false, stopinclusive: true }],
-                    isnot: true
-                  }
-                }
-              ]
-            }
-          ]
-        }
-      },
-      nav: {
-        header_mode: "with_tabs"
-      },
-      activeCohort: -1
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": testBarCount
-      }
-    }
-  });
-  function testBarCount(barchart) {
-    const barDiv = barchart.Inner.dom.barDiv;
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    test.equal(numBars, 8, "should have 8 bars");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("max number of bins: exceeded", (test) => {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            term: termjson["aaclassic_5"],
-            q: {
-              type: "regular-bin",
-              bin_size: 1e3,
-              stopinclusive: true,
-              first_bin: { startunbounded: true, stop: 1, stopinclusive: true, bin: "first" },
-              numDecimals: 1,
-              last_bin: { start: 3e4, bin: "last", stopunbounded: true },
-              startinclusive: false
-            }
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  let barDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    testBarCount(barchart);
-    triggerExceedMaxBin(barchart);
-    await testExceedMaxBin(barchart);
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-  function testBarCount(barchart) {
-    const numBars = barDiv.selectAll(".bars-cell-grp").size();
-    test.equal(numBars, 22, "should have 22 age bars");
-  }
-  function triggerExceedMaxBin(barchart) {
-    barchart.Inner.app.dispatch({
-      type: "plot_edit",
-      id: "aaclassic_5",
-      config: {
-        term: {
-          id: "aaclassic_5",
-          term: barchart.Inner.config.term.term,
-          q: {
-            type: "regular-bin",
-            bin_size: 100,
-            stopinclusive: true,
-            first_bin: { startunbounded: true, stop: 1, stopinclusive: true, bin: "first" },
-            numDecimals: 1,
-            last_bin: { start: 3e4, bin: "last", stopunbounded: true },
-            startinclusive: false
-          }
-        }
-      }
-    });
-  }
-  async function testExceedMaxBin(barchart) {
-    const barLoc = Locator.init(barchart.Inner.dom.holder.node());
-    const numBars = await barLoc.shows(".bars-cell-grp", { visibility: false, count: 22 }).get();
-    test.equal(numBars.length, 22, "should hide the previously rendered 22 age bars on error and not re-render");
-    const errorbar = await barLoc.shows(".sja_errorbar").get(0);
-    test.true(errorbar?.innerText.includes("max_num_bins_reached"), "should show a max number of bins error");
-  }
-});
-(0, import_tape.default)("minimum sample size", (test) => {
-  test.timeoutAfter(3e3);
-  const runpp2 = getRunPp("mass", {
-    state: {
-      vocab: {
-        dslabel: "ProtectedTest",
-        genome: "hg38-test"
-      }
-    },
-    debug: 1
-  });
-  runpp2({
-    state: {
-      termfilter: {
-        filter: {
-          type: "tvslst",
-          join: "and",
-          lst: [
-            {
-              type: "tvs",
-              tvs: {
-                term: termjson.agedx,
-                ranges: [{ start: 1, startinclusive: true, stop: 3, stopinclusive: true }]
-              }
-            },
-            {
-              type: "tvs",
-              tvs: {
-                term: termjson.sex,
-                values: [{ key: "1" }]
-              }
-            }
-          ]
-        }
-      },
-      nav: {
-        activeTab: 1
-      },
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            term: termjson["diaggrp"]
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests,
-        error: runTests
-      }
-    },
-    debug: 1
-  });
-  let barDiv, errDiv;
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null).on("error", null);
-    barDiv = barchart.Inner.dom.barDiv;
-    errDiv = barchart.Inner.dom.errdiv;
-    await testBarCount(0, "with stricter filter");
-    test.true(errDiv.text().includes("has less than 10 samples"), "should display the expected error message");
-    test.notEqual(errDiv.style("display"), "none", "should have a visible red error div");
-    await triggerClearedError(barchart);
-  }
-  async function testBarCount(expected, testcase) {
-    if (expected > 0) {
-      const numBars2 = await Locator.init(barDiv.node()).shows(".bars-cell-grp", { count: expected }).length();
-      test.equal(numBars2, expected, `should have ${expected} bars ${testcase}`);
-      return;
-    }
-    const numBars = await Locator.init(barDiv.node()).find(".bars-cell-grp").length();
-    test.equal(numBars, expected, `should have ${expected} bars ${testcase}`);
-  }
-  async function triggerClearedError(barchart) {
-    barchart.on("postRender.test", testClearedError).on("error", testClearedError);
-    await barchart.Inner.app.dispatch({
-      type: "filter_replace",
-      filter: {
-        type: "tvslst",
-        join: "",
-        in: true,
-        lst: [
-          {
-            type: "tvs",
-            tvs: {
-              term: termjson.agedx,
-              ranges: [{ start: 1, startinclusive: true, stop: 3, stopinclusive: true }]
-            }
-          }
-        ]
-      }
-    });
-  }
-  async function testClearedError(barchart) {
-    barchart.on("postRender.test", null).on("error", null);
-    await testBarCount(3, "with looser filter");
-    test.equal(errDiv.text(), "", "should have an empty error message");
-    test.equal(errDiv.style("display"), "none", "should have a hidden red error div");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-(0, import_tape.default)("no visible series data, no overlay", function(test) {
-  test.timeoutAfter(3e3);
-  runpp({
-    state: {
-      nav: {
-        header_mode: "search_only"
-      },
-      plots: [
-        {
-          chartType: "barchart",
-          term: {
-            id: "cisplateq_5"
-          }
-        }
-      ]
-    },
-    barchart: {
-      callbacks: {
-        "postRender.test": runTests
-      }
-    }
-  });
-  async function runTests(barchart) {
-    barchart.on("postRender.test", null);
-    const barLoc = Locator.init(barchart.Inner.dom.holder);
-    const banner = await barLoc.shows('[data-testid="sjpp-barchart-banner"]').get();
-    test.equal(banner.length, 1, "should show the banner");
-    test.true(
-      banner[0]?.innerText.includes("No visible barchart data "),
-      "should show a banner for no visible data to render"
-    );
-    test.equal(await barLoc.shows(".sjpp-hidden-legend-item").length(), 1, "should show a legend entry");
-    if (test._ok) barchart.Inner.app.destroy();
-    test.end();
-  }
-});
-var tp53dtTermFilter = {
-  type: "tvslst",
-  in: true,
-  join: "",
-  lst: [
-    {
-      type: "tvs",
-      tvs: {
-        term: {
-          id: "snvindel_somatic",
-          query: "snvindel",
-          name: "SNV/indel (somatic)",
-          parent_id: null,
-          isleaf: true,
-          type: "dtsnvindel",
-          dt: 1,
-          values: {
-            M: { label: "MISSENSE" },
-            F: { label: "FRAMESHIFT" },
-            WT: { label: "Wildtype" }
-          },
-          name_noOrigin: "SNV/indel",
-          origin: "somatic",
-          parentTerm: {
-            name: "TP53",
-            genes: [
-              {
-                kind: "gene",
-                id: "TP53",
-                gene: "TP53",
-                name: "TP53",
-                type: "geneVariant"
-              }
-            ],
-            type: "geneVariant"
-          }
-        },
-        values: [
-          {
-            key: "M",
-            label: "MISSENSE",
-            value: "M",
-            bar_width_frac: null
-          }
-        ],
-        genotype: "variant",
-        mcount: "any"
-      }
-    }
-  ],
-  tag: "filterUiRoot"
-};
-var runpp = getRunPp("mass", {
-  state: {
-    nav: {
-      activeTab: 1
-    },
-    vocab: {
-      dslabel: "TermdbTest",
-      genome: "hg38-test"
-    }
-  },
-  debug: 1
-});
-//# sourceMappingURL=barchart.integration.spec-H4WGHQ7R.js.map