@sjcrh/proteinpaint-client 2.191.4 → 2.193.0

package/dist/barchart2-AT5FXOUY.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/profile/barchart2.ts"],
+  "sourcesContent": ["import { getCompInit, copyMerge } from '#rx'\nimport { fillTwLst } from '#termsetting'\nimport { scaleLinear as d3Linear } from 'd3-scale'\nimport { axisTop } from 'd3-axis'\nimport { dofetch3 } from '#common/dofetch'\nimport {\n\tprofilePlot,\n\tgetDefaultProfilePlotSettings,\n\tgetProfilePlotConfig,\n\tFULL_COHORT,\n\tABBREV_COHORT\n} from './profilePlot.js'\n\n/*\nprofileBarchart2 \u2014 client class for the profile bar chart.\n\nRenders a multi-component grouped bar chart of objective + subjective scores\nby module/domain. Each row in the dataset config's plotByComponent contributes\nterm1 (objective) and optionally term2 (subjective); the client flattens them\ninto scoreTerms and posts to termdb/profileBarchart2Scores.\n\n- The server derives the facility term id from term ID prefixes \u2014 no\n  client-supplied facilityTW.\n- Minimal payload: scoreTerms stripped to { term: { id }, q } before sending.\n- Always-aggregated response (median percentage across eligible sites).\n*/\n\nconst stepx = 500\nconst barwidth = 400\n\nclass ProfileBarchart2 extends profilePlot {\n\tstatic type = 'profileBarchart2'\n\tadditionalInputs: any[]\n\tcomponentNames!: { value: string; label: string }[]\n\tconfigProfileComponent: any\n\trowCount: number = 0\n\tprofileComponent!: string\n\n\tconstructor(opts) {\n\t\tsuper(opts, 'profileBarchart2')\n\t\tthis.additionalInputs = []\n\t}\n\n\tasync init(appState) {\n\t\tawait super.init(appState)\n\t\tconst config = appState.plots.find(p => p.id === this.id)\n\t\tthis.componentNames = config.plotByComponent.map(elem => ({\n\t\t\tvalue: elem.profileComponent.name,\n\t\t\tlabel: elem.profileComponent.name\n\t\t}))\n\t\tconst profileComponentInput = {\n\t\t\tlabel: 'Component',\n\t\t\ttype: 'dropdown',\n\t\t\tchartType: 'profileBarchart2',\n\t\t\toptions: this.componentNames,\n\t\t\tsettingsKey: 'profileComponent',\n\t\t\tcallback: value => this.setProfileComponent(value)\n\t\t}\n\t\tthis.additionalInputs.push(profileComponentInput)\n\t}\n\n\tsetProfileComponent(value) {\n\t\tthis.settings.profileComponent = value\n\t\tthis.app.dispatch({ type: 'plot_edit', id: this.id, config: this.config })\n\t}\n\n\tasync main() {\n\t\tthis.dom.loadingDiv.style('display', '')\n\t\ttry {\n\t\t\tawait super.main()\n\t\t\tthis.configProfileComponent =\n\t\t\t\tthis.config.plotByComponent.find(comp => comp.profileComponent.name == this.settings.profileComponent) ||\n\t\t\t\tthis.config.plotByComponent[0]\n\t\t\tthis.rowCount = 0\n\t\t\tthis.scoreTerms = []\n\t\t\tfor (const group of this.configProfileComponent.groups)\n\t\t\t\tfor (const row of group.rows) {\n\t\t\t\t\tthis.rowCount++\n\t\t\t\t\tif (row.term1) this.scoreTerms.push(row.term1)\n\t\t\t\t\tif (row.term2) this.scoreTerms.push(row.term2)\n\t\t\t\t}\n\t\t\tawait this.setControls(this.additionalInputs)\n\t\t\tthis.profileComponent = this.settings.profileComponent || this.componentNames[0].value\n\t\t\tthis.plot()\n\t\t} catch (e) {\n\t\t\tconsole.error(e)\n\t\t\tthrow `${e} [profileBarchart2 main()]`\n\t\t} finally {\n\t\t\tthis.dom.loadingDiv.style('display', 'none')\n\t\t}\n\t}\n\n\t/**\n\t * Override setControls() to fetch data from the dedicated barchart2 route.\n\t * The base class setControls() builds filter UI and sets this.filter but\n\t * skips the data fetch for profileBarchart2 (see profilePlot.ts).\n\t * This method calls termdb/profileBarchart2Scores, which derives the facility\n\t * term server-side and returns aggregated (median) percentages.\n\t */\n\tasync setControls(additionalInputs: any[] = []) {\n\t\tawait super.setControls(additionalInputs)\n\t\tthis.data = await this.fetchAggregatedScores()\n\t\tif (this.data && 'error' in this.data) throw this.data.error\n\t}\n\n\tprivate async fetchAggregatedScores() {\n\t\t// No facilityTW \u2014 server derives it from term ID prefixes in the request.\n\t\t// scoreTerms stripped to { term: { id }, q } only \u2014 server fills the rest via termjsonByOneid.\n\t\treturn dofetch3('termdb/profileBarchart2Scores', {\n\t\t\tbody: {\n\t\t\t\tgenome: this.state.vocab.genome,\n\t\t\t\tdslabel: this.state.vocab.dslabel,\n\t\t\t\tscoreTerms: this.scoreTerms.map((t: any) => ({\n\t\t\t\t\tscore: { term: { id: t.score.term.id }, q: t.score.q },\n\t\t\t\t\tmaxScore: typeof t.maxScore === 'number' ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }\n\t\t\t\t})),\n\t\t\t\tfilterByUserSites: this.settings?.filterByUserSites,\n\t\t\t\tfilter: this.filter\n\t\t\t}\n\t\t})\n\t}\n\n\tonMouseOut(event) {\n\t\tif (event.target.tagName == 'rect' && event.target.getAttribute('fill-opacity') == 0.3) {\n\t\t\tevent.target.setAttribute('fill-opacity', 0)\n\t\t}\n\t}\n\n\tonMouseOver(event) {\n\t\tif (event.target.tagName == 'rect' && event.target.getAttribute('fill-opacity') == 0) {\n\t\t\tevent.target.setAttribute('fill-opacity', 0.3)\n\t\t}\n\t}\n\n\tplot() {\n\t\tconst { hasSubjectiveData } = this.createSvg()\n\t\tthis.drawTitleAndDefs(hasSubjectiveData)\n\t\tthis.drawColumnHeaders(hasSubjectiveData)\n\t\tconst yEnd = this.drawComponentRows(hasSubjectiveData)\n\t\tthis.drawGuideLines(yEnd, hasSubjectiveData)\n\t\tthis.drawLegend(yEnd, hasSubjectiveData)\n\t}\n\n\tprivate createSvg() {\n\t\tconst hasSubjectiveData = this.configProfileComponent.hasSubjectiveData\n\t\tconst width = this.state.activeCohort == ABBREV_COHORT ? 1000 : 1300\n\t\tconst height = this.rowCount * 32 + 450\n\t\tthis.dom.svg = this.dom.plotDiv.append('svg').attr('width', width).attr('height', height)\n\t\treturn { width, height, hasSubjectiveData }\n\t}\n\n\tprivate drawTitleAndDefs(_hasSubjectiveData: boolean) {\n\t\tconst title =\n\t\t\tthis.state.activeCohort == ABBREV_COHORT\n\t\t\t\t? `Score-based Results for the ${this.profileComponent} Component by Module and Domain Compared with End-User Impression`\n\t\t\t\t: `Objective ${\n\t\t\t\t\t\tthis.profileComponent == 'Patients and Outcomes' ? '' : 'and Subjective '\n\t\t\t\t  }Score-based Results for the ${this.profileComponent} Component by Module and Domain`\n\t\tthis.dom.svg.append('text').attr('transform', `translate(50, 30)`).attr('font-weight', 'bold').text(title)\n\n\t\tconst color = this.configProfileComponent.profileComponent.color\n\t\tthis.dom.svg\n\t\t\t.append('defs')\n\t\t\t.append('pattern')\n\t\t\t.attr('id', `${this.id}_diagonalHatch`)\n\t\t\t.attr('patternUnits', 'userSpaceOnUse')\n\t\t\t.attr('width', 4)\n\t\t\t.attr('height', 4)\n\t\t\t.append('path')\n\t\t\t.attr('d', 'M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2')\n\t\t\t.attr('stroke-width', 1)\n\t\t\t.attr('stroke', color)\n\t}\n\n\tprivate drawColumnHeaders(hasSubjectiveData: boolean) {\n\t\tconst svg = this.dom.svg\n\t\tconst config = this.config\n\t\tfor (const [i, c] of config.columnNames.entries()) {\n\t\t\tif (i == 1 && !hasSubjectiveData) break\n\t\t\tconst x = (i % 2 == 0 ? 400 : 900) + 10\n\t\t\tconst y = 70\n\t\t\tsvg\n\t\t\t\t.append('text')\n\t\t\t\t.attr('transform', `translate(${x}, ${y})`)\n\t\t\t\t.attr('text-anchor', 'start')\n\t\t\t\t.style('font-weight', 'bold')\n\t\t\t\t.text(c)\n\t\t\tthis.drawAxis(x, y + 30)\n\t\t}\n\t}\n\n\tprivate drawAxis(x: number, y: number) {\n\t\tconst xAxisScale = d3Linear().domain([0, 100]).range([0, barwidth])\n\t\tthis.dom.svg.append('g').attr('transform', `translate(${x}, ${y})`).call(axisTop(xAxisScale))\n\t}\n\n\tprivate drawComponentRows(hasSubjectiveData: boolean): number {\n\t\tconst svg = this.dom.svg\n\t\tconst step = 30\n\t\tlet y = 70\n\t\tfor (const group of this.configProfileComponent.groups) {\n\t\t\tsvg\n\t\t\t\t.append('text')\n\t\t\t\t.attr('transform', `translate(${50}, ${y + 40})`)\n\t\t\t\t.attr('text-anchor', 'start')\n\t\t\t\t.text(`${group.label}`)\n\t\t\t\t.style('font-weight', 'bold')\n\n\t\t\ty += step + 20\n\t\t\tfor (const row of group.rows) {\n\t\t\t\tconst g = svg.append('g')\n\t\t\t\tg.append('rect')\n\t\t\t\t\t.attr('transform', `translate(${20}, ${y - 6})`)\n\t\t\t\t\t.attr('x', 0)\n\t\t\t\t\t.attr('y', 0)\n\t\t\t\t\t.attr('width', hasSubjectiveData ? 1500 : 850)\n\t\t\t\t\t.attr('height', 30)\n\t\t\t\t\t.attr('fill', '#f8d335')\n\t\t\t\t\t.attr('fill-opacity', 0)\n\t\t\t\tconst x = 400\n\t\t\t\tif (row.term1) this.drawRect(x, y, row, 'term1', g)\n\t\t\t\tif (row.term2) this.drawRect(x + stepx, y, row, 'term2', g)\n\t\t\t\ty += step\n\t\t\t}\n\t\t}\n\t\treturn y\n\t}\n\n\tprivate drawRect(x: number, y: number, row: any, field: 'term1' | 'term2', g: any) {\n\t\tconst hasSubjectiveData = this.configProfileComponent.hasSubjectiveData\n\t\tconst d = row[field]\n\t\tlet subjectiveTerm = false\n\t\tif ((row.name == 'Total Module' || row.name == 'End-user Impression*') && !row.term2) subjectiveTerm = true\n\t\tconst termColor = d.score.term.color\n\t\tconst value = this.getPercentage(d)\n\t\tconst isFirst = field == 'term1' || (field == 'term2' && !row.term1)\n\t\tconst pairValue = field == 'term1' ? this.getPercentage(row.term2) : this.getPercentage(row.term1)\n\t\tconst width = value ? (value / 100) * barwidth : 0\n\t\tif (value) {\n\t\t\tconst isObjective =\n\t\t\t\tthis.state.activeCohort == FULL_COHORT && this.settings.profileComponent == 'Patients and Outcomes'\n\t\t\t\t\t? true\n\t\t\t\t\t: !subjectiveTerm && (pairValue || !hasSubjectiveData)\n\t\t\tconst rect = g\n\t\t\t\t.append('rect')\n\t\t\t\t.attr('transform', `translate(${x + 10}, ${y})`)\n\t\t\t\t.attr('pointer-events', 'none')\n\t\t\t\t.attr('x', 0)\n\t\t\t\t.attr('y', 0)\n\t\t\t\t.attr('width', width)\n\t\t\t\t.attr('height', 20)\n\t\t\tif (isObjective) rect.attr('fill', termColor)\n\t\t\telse {\n\t\t\t\tconst termid = this.id + d.score.term.id\n\t\t\t\tg.append('defs')\n\t\t\t\t\t.append('pattern')\n\t\t\t\t\t.attr('id', termid)\n\t\t\t\t\t.attr('patternUnits', 'userSpaceOnUse')\n\t\t\t\t\t.attr('width', 4)\n\t\t\t\t\t.attr('height', 4)\n\t\t\t\t\t.append('path')\n\t\t\t\t\t.attr('d', 'M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2')\n\t\t\t\t\t.attr('stroke-width', 1)\n\t\t\t\t\t.attr('stroke', termColor)\n\t\t\t\trect.attr('fill', `url(#${termid})`)\n\t\t\t}\n\t\t}\n\t\tconst text = g\n\t\t\t.append('text')\n\t\t\t.attr('pointer-events', 'none')\n\t\t\t.attr('text-anchor', 'end')\n\t\t\t.text(`${value || 0}%`)\n\t\tif (width > 0) text.attr('transform', `translate(${x + width + 55}, ${y + 15})`)\n\t\telse if (!pairValue && field == 'term1') text.attr('transform', `translate(${x + 35}, ${y + 15})`)\n\n\t\tif (isFirst)\n\t\t\tg.append('text')\n\t\t\t\t.attr('transform', `translate(${field == 'term1' ? x : x - stepx}, ${y + 15})`)\n\t\t\t\t.attr('text-anchor', 'end')\n\t\t\t\t.text(row.name)\n\t\t\t\t.attr('pointer-events', 'none')\n\t}\n\n\tprivate drawGuideLines(yEnd: number, hasSubjectiveData: boolean) {\n\t\tthis.drawGuide(410, 120, 50, yEnd, 'B')\n\t\tthis.drawGuide(410, 120, 75, yEnd, 'A')\n\t\tif (!hasSubjectiveData) return\n\t\tthis.drawGuide(910, 120, 50, yEnd, 'B')\n\t\tthis.drawGuide(910, 120, 75, yEnd, 'A')\n\t}\n\n\tprivate drawGuide(x: number, y: number, percent: number, y2: number, text: string) {\n\t\tconst svg = this.dom.svg\n\t\tconst x1 = x + (percent / 100) * barwidth\n\t\tsvg\n\t\t\t.append('line')\n\t\t\t.style('stroke', '#aaa')\n\t\t\t.style('stroke-width', 1)\n\t\t\t.style('stroke-dasharray', '5, 5')\n\t\t\t.attr('x1', x1)\n\t\t\t.attr('y1', y)\n\t\t\t.attr('x2', x1)\n\t\t\t.attr('y2', y2)\n\t\tsvg\n\t\t\t.append('text')\n\t\t\t.attr('transform', `translate(${x1 + 0.125 * barwidth}, ${y2 + 20})`)\n\t\t\t.attr('text-anchor', 'middle')\n\t\t\t.text(text)\n\t\t\t.style('font-weight', 'bold')\n\t\tif (percent == 50)\n\t\t\tsvg\n\t\t\t\t.append('text')\n\t\t\t\t.attr('transform', `translate(${x1 - 0.25 * barwidth}, ${y2 + 20})`)\n\t\t\t\t.attr('text-anchor', 'middle')\n\t\t\t\t.text('C')\n\t\t\t\t.style('font-weight', 'bold')\n\t}\n\n\tprivate drawLegend(yEnd: number, hasSubjectiveData: boolean) {\n\t\tthis.legendG = this.dom.svg\n\t\t\t.append('g')\n\t\t\t.attr('data-testid', 'sjpp-profileBarchart2-legend')\n\t\t\t.attr('transform', `translate(400,${yEnd + 90})`)\n\t\tthis.filterG = this.dom.svg.append('g').attr('transform', `translate(0,${yEnd + 90})`)\n\n\t\tif (!this.isComparison) {\n\t\t\tthis.legendG\n\t\t\t\t.append('text')\n\t\t\t\t.attr('text-anchor', 'left')\n\t\t\t\t.style('font-weight', 'bold')\n\t\t\t\t.text('Overall Score')\n\t\t\t\t.attr('transform', `translate(0, -5)`)\n\n\t\t\tthis.addLegendItem('A', 'More than 75% of possible scorable items', 1)\n\t\t\tthis.addLegendItem('B', '50-75% of possible scorable items', 2)\n\t\t\tthis.addLegendItem('C', 'Less than 50% of possible scorable items', 3)\n\t\t\tif (this.state.activeCohort == ABBREV_COHORT) {\n\t\t\t\tthis.addEndUserImpressionNote(this.legendG.append('g'))\n\t\t\t} else this.addPOCNote(this.legendG.append('g'))\n\t\t}\n\t\tthis.addFilterLegend()\n\n\t\tif (!hasSubjectiveData) return\n\n\t\tconst color = this.configProfileComponent.profileComponent.color\n\t\tconst svg = this.dom.svg\n\t\tconst y = yEnd + 40\n\t\tlet x = 600\n\t\tconst lineG = svg.append('g')\n\t\tthis.drawLegendRect(x, y, 'and', color, lineG)\n\t\tx += 300\n\t\tthis.drawLegendRect(x, y, 'or', color, lineG)\n\t}\n\n\tdrawLegendRect(x: number, y: number, operator: 'and' | 'or', color: string, lineG: any) {\n\t\tconst rect = lineG\n\t\t\t.append('g')\n\t\t\t.attr('transform', `translate(${x}, ${y})`)\n\t\t\t.append('rect')\n\t\t\t.attr('x', 0)\n\t\t\t.attr('y', 0)\n\t\t\t.attr('width', 20)\n\t\t\t.attr('height', 20)\n\t\tif (operator == 'and') rect.attr('fill', color)\n\t\telse rect.attr('fill', `url(#${this.id}_diagonalHatch)`)\n\n\t\tconst text = this.dom.svg\n\t\t\t.append('text')\n\t\t\t.attr('transform', `translate(${x + 25}, ${y + 15})`)\n\t\t\t.attr('text-anchor', 'start')\n\t\t\t.text('Objective ')\n\t\ttext.append('tspan').attr('font-weight', 'bold').text(operator)\n\t\ttext.append('tspan').text(' Subjective data')\n\t}\n}\n\nexport async function getPlotConfig(opts, app, _activeCohort) {\n\ttry {\n\t\tconst activeCohort = _activeCohort === undefined ? app.getState().activeCohort : _activeCohort\n\t\tconst defaults = await getProfilePlotConfig(activeCohort, app, opts)\n\t\tif (!defaults) throw 'default config not found in termdbConfig.plotConfigByCohort.profileBarchart2'\n\t\tdefaults.settings = { profileBarchart2: getDefaultProfilePlotSettings() }\n\t\tlet config = structuredClone(defaults)\n\t\tconfig = copyMerge(config, opts)\n\t\tconfig.settings.controls = { isOpen: false }\n\t\tconst twlst: any[] = []\n\t\tfor (const profileComponent of config.plotByComponent) {\n\t\t\tprofileComponent.hasSubjectiveData = false\n\t\t\tfor (const group of profileComponent.groups)\n\t\t\t\tfor (const row of group.rows) {\n\t\t\t\t\tif (row.term1) {\n\t\t\t\t\t\trow.term1.score.q = row.term1.maxScore.q = { mode: 'continuous' }\n\t\t\t\t\t\ttwlst.push(row.term1.score)\n\t\t\t\t\t\ttwlst.push(row.term1.maxScore)\n\t\t\t\t\t}\n\t\t\t\t\tif (row.term2) {\n\t\t\t\t\t\trow.term2.score.q = row.term2.maxScore.q = { mode: 'continuous' }\n\t\t\t\t\t\ttwlst.push(row.term2.score)\n\t\t\t\t\t\ttwlst.push(row.term2.maxScore)\n\t\t\t\t\t}\n\t\t\t\t\tif (row.term1 && row.term2) profileComponent.hasSubjectiveData = true\n\t\t\t\t}\n\t\t}\n\t\tawait fillTwLst(twlst, app.vocabApi)\n\n\t\treturn config\n\t} catch (e) {\n\t\tthrow `${e} [profileBarchart2 getPlotConfig()]`\n\t}\n}\n\nexport const profileBarchart2Init = getCompInit(ProfileBarchart2)\n// this alias will allow abstracted dynamic imports\nexport const componentInit = profileBarchart2Init\n\nexport function getDefaultProfileBarchart2Settings() {\n\treturn {}\n}\n"],
+  "mappings": 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+  "names": []
+}

package/dist/bars.renderer-57KSYAAT.js

@@ -0,0 +1,12 @@
+import {
+  barsRenderer
+} from "./chunk-LQJMCE7G.js";
+import "./chunk-LOZEKOES.js";
+import "./chunk-SOTB4FRE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+export {
+  barsRenderer as default
+};
+//# sourceMappingURL=bars.renderer-57KSYAAT.js.map