@sjcrh/proteinpaint-client 2.191.4 → 2.193.0

package/dist/radar2-KREAMGVV.js

@@ -1,321 +0,0 @@
-import {
-  ABBREV_COHORT,
-  getDefaultProfilePlotSettings,
-  getProfilePlotConfig,
-  makeChartBtnMenu,
-  profilePlot
-} from "./chunk-P3IENRWJ.js";
-import {
-  fillTwLst,
-  renderTable
-} from "./chunk-SA7APTJR.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-SKREEF3H.js";
-import "./chunk-HYOEWQ5P.js";
-import "./chunk-HBW42TDT.js";
-import "./chunk-G6O3URDN.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-IIT367QZ.js";
-import "./chunk-RZGEKL77.js";
-import "./chunk-UI7OCM2A.js";
-import "./chunk-YZK37YCC.js";
-import {
-  dofetch3
-} from "./chunk-7EMWHCVW.js";
-import "./chunk-7IYJZZQI.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-M3J4MINX.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-QH6W3NVF.js";
-import "./chunk-NOEAT6CX.js";
-import "./chunk-4UWS5Y3N.js";
-import "./chunk-DD4R5P6W.js";
-import "./chunk-JNITUVXP.js";
-import {
-  arc_default,
-  line_default
-} from "./chunk-KSGA62R2.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HFNDKYVF.js";
-
-// plots/profile/radar2.ts
-var ProfileRadar2 = class extends profilePlot {
-  static {
-    this.type = "profileRadar2";
-  }
-  constructor(opts) {
-    super(opts, "profileRadar2");
-    this.radius = 200;
-    this.lineGenerator = line_default().defined((d) => d !== null);
-    this.arcGenerator = arc_default().innerRadius(0);
-  }
-  async init(appState) {
-    await super.init(appState);
-    const config = appState.plots.find((p) => p.id === this.id);
-    for (const row of config.terms) {
-      this.scoreTerms.push(row.term1);
-      this.scoreTerms.push(row.term2);
-    }
-    this.angle = Math.PI * 2 / config.terms.length;
-  }
-  async main() {
-    await super.main();
-    await this.setControls();
-    this.plot();
-  }
-  /**
-   * Override setControls() to fetch data from the dedicated radar2 route.
-   * The base class setControls() builds filter UI and sets this.filter but
-   * skips the data fetch for profileRadar2 (see profilePlot.ts).
-   */
-  async setControls(additionalInputs = []) {
-    await super.setControls(additionalInputs);
-    this.data = await this.fetchAggregatedScores();
-    if (this.data && "error" in this.data) throw this.data.error;
-  }
-  async fetchAggregatedScores() {
-    return dofetch3("termdb/profileRadar2Scores", {
-      body: {
-        genome: this.state.vocab.genome,
-        dslabel: this.state.vocab.dslabel,
-        scoreTerms: this.scoreTerms.map((t) => ({
-          score: { term: { id: t.score.term.id }, q: t.score.q },
-          maxScore: typeof t.maxScore === "number" ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }
-        })),
-        filterByUserSites: this.settings?.filterByUserSites,
-        filter: this.filter
-      }
-    });
-  }
-  plot() {
-    const { radarG, rows, data, data2 } = this.createSvgAndGrid();
-    this.drawLines(radarG, data, data2);
-    this.drawPercentLabels(radarG);
-    this.drawTableAndLegend(rows);
-  }
-  createSvgAndGrid() {
-    const config = this.config;
-    const width = this.isComparison ? 1e3 : 1050;
-    const height = 650;
-    this.dom.svg = this.dom.plotDiv.append("div").style("display", "inline-block").append("svg").attr("width", width).attr("height", height);
-    const rightDiv = this.dom.plotDiv.append("div").style("display", "inline-block").style("vertical-align", "top").style("margin-top", "140px").style("margin-right", "20px");
-    this.dom.tableDiv = rightDiv.append("div").attr("data-testid", "sjpp-profileRadar2-data-table");
-    const x = 300;
-    const y = 310;
-    this.dom.svg.append("text").attr("transform", `translate(60, 40)`).attr("font-weight", "bold").attr("font-size", "0.9rem").text(config.title);
-    const radarG = this.dom.svg.append("g").attr("transform", `translate(${x},${y})`);
-    this.radarG = radarG;
-    this.legendG = this.dom.svg.append("g").attr("data-testid", "sjpp-profileRadar2-legend").attr("transform", `translate(${x + 340},${y - 120})`);
-    this.filterG = this.dom.svg.append("g").attr("transform", `translate(${x + 340},${y - 20})`);
-    this.noteG = this.dom.svg.append("g").attr("transform", `translate(20, ${y + 150})`);
-    for (let i2 = 0; i2 <= 10; i2++) this.drawPolygon(i2 * 10);
-    const rows = [];
-    const data = [];
-    const data2 = [];
-    const angle = this.angle;
-    let i = 0;
-    for (const { module, term1, term2 } of config.terms) {
-      const iangle = i * angle - Math.PI / 2;
-      const raw1 = this.getPercentage(term1);
-      const raw2 = this.getPercentage(term2);
-      const p1 = Number.isFinite(raw1) ? raw1 : null;
-      const p2 = Number.isFinite(raw2) ? raw2 : null;
-      this.radarG.append("path").datum({ module, percentage1: p1, percentage2: p2 }).attr("fill", "transparent").attr(
-        "d",
-        this.arcGenerator({
-          outerRadius: this.radius,
-          startAngle: i * angle - angle / 2,
-          endAngle: (i + 1) * angle - angle / 2
-        })
-      ).on("click", (event) => this.onMouseOver(event));
-      if (p2 !== null) this.addDataPoint("term2", p2, iangle, data2);
-      else data2.push(null);
-      if (p1 !== null) this.addDataPoint("term1", p1, iangle, data);
-      else data.push(null);
-      const color = term1.score.term.color;
-      const bothPresent = p1 !== null && p2 !== null;
-      const diff = bothPresent ? Math.abs(p1 - p2) : null;
-      const diffRow = diff !== null ? { value: diff } : { value: "\u2014" };
-      if (diff !== null && diff >= 20) diffRow.color = p2 > p1 ? "red" : "blue";
-      rows.push([
-        { color, disabled: true },
-        { value: module },
-        { value: p1 !== null ? p1 : "\u2014" },
-        { value: p2 !== null ? p2 : "\u2014" },
-        diffRow
-      ]);
-      this.drawModuleLabel(module, iangle);
-      i++;
-    }
-    return { radarG, rows, data, data2 };
-  }
-  drawLines(radarG, data, data2) {
-    const closePolygon = (arr) => {
-      const firstDefined = arr.find((v) => v !== null);
-      if (firstDefined) arr.push(firstDefined);
-    };
-    closePolygon(data);
-    closePolygon(data2);
-    const color1 = "blue";
-    const color2 = "gray";
-    radarG.append("g").append("path").style("stroke", color2).attr("fill", "none").style("stroke-dasharray", "5, 5").attr("stroke-width", "2px").attr("d", this.lineGenerator(data2));
-    radarG.append("g").append("path").style("stroke", color1).attr("fill", "none").attr("stroke-width", "2px").attr("d", this.lineGenerator(data));
-  }
-  drawPercentLabels(radarG) {
-    for (let i = 0; i <= 10; i++) {
-      const percent = i * 10;
-      radarG.append("text").attr("transform", `translate(0, ${-percent / 100 * this.radius - 2})`).attr("text-anchor", "end").style("font-size", "0.8rem").text(`${percent}%`).attr("pointer-events", "none");
-    }
-  }
-  drawTableAndLegend(rows) {
-    const config = this.config;
-    const columns = [
-      { label: "Color" },
-      { label: "Module" },
-      { label: config.term1.abbrev },
-      { label: config.term2.abbrev },
-      { label: "Difference*" }
-    ];
-    if (!this.isComparison) {
-      renderTable({
-        rows,
-        columns,
-        div: this.dom.tableDiv,
-        showLines: true,
-        resize: true,
-        maxHeight: "60vh"
-      });
-      this.addDifferenceNote(
-        `* Difference between ${config.term1.abbrev} and ${config.term2.abbrev}. If bigger than 20 and positive shown in blue, if negative shown in red.`
-      );
-      this.legendG.append("text").attr("text-anchor", "left").style("font-weight", "bold").text("Legend");
-      let abbrev = config.term1.abbrev ? `(${config.term1.abbrev})` : "";
-      this.addRadarLegendItem(`${config.term1.name} ${abbrev}`, "blue", 0, "none");
-      abbrev = config.term2.abbrev ? `(${config.term2.abbrev})` : "";
-      this.addRadarLegendItem(`${config.term2.name} ${abbrev}`, "gray", 1, "5, 5");
-      if (this.state.activeCohort == ABBREV_COHORT) this.addEndUserImpressionNote(this.noteG);
-      else this.addPOCNote(this.noteG);
-    }
-    this.addFilterLegend();
-  }
-  addDifferenceNote(text) {
-    const noteDiv = this.dom.tableDiv.append("div").attr("data-testid", "sjpp-profileRadar2-difference-note").style("display", "flex").style("align-items", "center").style("gap", "6px").style("margin-top", "8px").style("font-size", "0.85em").style("font-style", "italic").style("color", "#555");
-    noteDiv.append("span").attr("aria-hidden", "true").style("font-style", "normal").style("font-size", "1.1em").text("\u24D8");
-    noteDiv.append("span").text(text);
-  }
-  drawModuleLabel(module, iangle) {
-    const radius = this.radius;
-    const leftSide = iangle > Math.PI / 2 && iangle <= 3 / 2 * Math.PI;
-    const dx = radius * 1.1 * Math.cos(iangle);
-    let dy = radius * 1.1 * Math.sin(iangle) - 10;
-    const textElem = this.radarG.append("text").attr("x", `${dx}px`).attr("y", `${dy}px`).attr("font-size", "0.9em");
-    const texts = module.split(" ");
-    let span;
-    for (const text of texts) {
-      if (text != "and") {
-        dy += 15;
-        span = textElem.append("tspan").attr("x", `${dx}px`).attr("y", `${dy}px`).text(text);
-      } else span.append("tspan").text(" and");
-    }
-    if (leftSide) textElem.attr("text-anchor", "end");
-  }
-  addDataPoint(field, percentage, iangle, data) {
-    const iradius = percentage / 100 * this.radius;
-    const x = iradius * Math.cos(iangle);
-    const y = iradius * Math.sin(iangle);
-    const color = field == "term1" ? "blue" : "#aaa";
-    this.radarG.append("g").attr("transform", `translate(${x}, ${y})`).append("circle").attr("r", 4).attr("fill", color);
-    data.push([x, y]);
-  }
-  drawPolygon(percent) {
-    const data = [];
-    for (let i = 0; i < this.config.terms.length; i++) {
-      const iangle = i * this.angle - Math.PI / 2;
-      const iradius = percent / 100 * this.radius;
-      const x = iradius * Math.cos(iangle);
-      const y = iradius * Math.sin(iangle);
-      data.push([x, y]);
-    }
-    data.push(data[0]);
-    this.radarG.append("g").append("path").style("stroke", "#aaa").attr("fill", "none").attr("d", this.lineGenerator(data)).style("opacity", "0.5");
-  }
-  addRadarLegendItem(text, color, index, strokeDash) {
-    const step = 25;
-    const y = step + index * step;
-    const x = 35;
-    this.legendG.append("path").attr("stroke", color).style("stroke-dasharray", strokeDash).attr("stroke-width", "2px").attr(
-      "d",
-      this.lineGenerator([
-        [0, y - 5],
-        [x, y - 5]
-      ])
-    );
-    this.legendG.append("g").attr("transform", `translate(0, ${y - 5})`).append("circle").attr("r", 4).attr("fill", color);
-    this.legendG.append("text").attr("font-size", "0.9em").attr("transform", `translate(${x + 5}, ${y})`).attr("text-anchor", "left").append("tspan").text(text);
-  }
-  onMouseOver(event) {
-    const d = event.target.__data__;
-    if (d?.module) {
-      const label1 = this.config.term1.name;
-      const label2 = this.config.term2.name;
-      const menu = this.tip.clear();
-      menu.d.append("div").style("font-weight", "bold").text(d.module);
-      const table = menu.d.append("table");
-      let tr = table.append("tr");
-      tr.append("td").text(label1);
-      tr.append("td").text(d.percentage1 ?? "\u2014");
-      tr = table.append("tr");
-      tr.append("td").text(label2);
-      tr.append("td").text(d.percentage2 ?? "\u2014");
-      menu.show(event.clientX, event.clientY, true, true);
-    } else this.onMouseOut(event);
-  }
-};
-async function getPlotConfig(opts, app, _activeCohort) {
-  try {
-    const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
-    const defaults = await getProfilePlotConfig(activeCohort, app, opts);
-    if (!defaults) throw "default config not found in termdbConfig.plotConfigByCohort.profileRadar2";
-    defaults.settings = { profileRadar2: getDefaultProfilePlotSettings() };
-    const config = copyMerge(structuredClone(defaults), opts);
-    config.settings.controls = { isOpen: false };
-    const twlst = [];
-    for (const row of config.terms) {
-      row.term1.score.q = { mode: "continuous" };
-      twlst.push(row.term1.score);
-      if (row.term1.maxScore.id) {
-        row.term1.maxScore.q = { mode: "continuous" };
-        twlst.push(row.term1.maxScore);
-      }
-      row.term2.score.q = { mode: "continuous" };
-      twlst.push(row.term2.score);
-      if (row.term2.maxScore.id) {
-        row.term2.maxScore.q = { mode: "continuous" };
-        twlst.push(row.term2.maxScore);
-      }
-    }
-    await fillTwLst(twlst, app.vocabApi);
-    return config;
-  } catch (e) {
-    throw `${e} [profileRadar2 getPlotConfig()]`;
-  }
-}
-var profileRadar2Init = getCompInit(ProfileRadar2);
-var componentInit = profileRadar2Init;
-export {
-  componentInit,
-  getPlotConfig,
-  makeChartBtnMenu,
-  profileRadar2Init
-};
-//# sourceMappingURL=radar2-KREAMGVV.js.map

package/dist/radar2-KREAMGVV.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../plots/profile/radar2.ts"],
-  "sourcesContent": ["import { getCompInit, copyMerge } from '#rx'\nimport { fillTwLst } from '#termsetting'\nimport * as d3 from 'd3'\nimport { dofetch3 } from '#common/dofetch'\nimport { renderTable } from '../../dom/table.js'\nimport {\n\tprofilePlot,\n\tgetDefaultProfilePlotSettings,\n\tgetProfilePlotConfig,\n\tmakeChartBtnMenu,\n\tABBREV_COHORT\n} from './profilePlot.js'\n\n/*\nprofileRadar2 \u2014 client class for the profile radar chart.\n\nRenders a two-series radar polygon (term1 vs term2) over module vertices. Each\nrow in the dataset config's options[].terms contributes term1 and term2; the\nclient flattens them into scoreTerms and posts to termdb/profileRadar2Scores.\n\n- The server derives the facility term id from term ID prefixes \u2014 no\n  client-supplied facilityTW.\n- Minimal payload: scoreTerms stripped to { term: { id }, q } before sending.\n- Always-aggregated response (median percentage across eligible sites).\n- d3.line().defined() lets per-module series contain nulls for modules whose\n  score the server omitted (no eligible data), producing polygon gaps instead\n  of NaN-poisoned paths.\n*/\n\nclass ProfileRadar2 extends profilePlot {\n\tstatic type = 'profileRadar2'\n\n\tradius: number\n\tlineGenerator: any\n\tarcGenerator: any\n\tangle?: number\n\tradarG: any\n\tnoteG: any\n\n\tconstructor(opts) {\n\t\tsuper(opts, 'profileRadar2')\n\t\tthis.radius = 200\n\t\t// `.defined()` lets per-module series contain `null` for modules whose score the\n\t\t// server omitted (no eligible data). A missing vertex becomes a gap in the radar\n\t\t// polygon instead of an NaN-poisoned `d` attribute. drawPolygon() always passes\n\t\t// fully-populated arrays, so it is unaffected.\n\t\tthis.lineGenerator = d3.line().defined((d: any) => d !== null)\n\t\tthis.arcGenerator = d3.arc().innerRadius(0)\n\t}\n\n\tasync init(appState) {\n\t\tawait super.init(appState)\n\t\tconst config = appState.plots.find(p => p.id === this.id)\n\t\tfor (const row of config.terms) {\n\t\t\tthis.scoreTerms.push(row.term1)\n\t\t\tthis.scoreTerms.push(row.term2)\n\t\t}\n\t\tthis.angle = (Math.PI * 2) / config.terms.length\n\t}\n\n\tasync main() {\n\t\tawait super.main()\n\t\tawait this.setControls()\n\t\tthis.plot()\n\t}\n\n\t/**\n\t * Override setControls() to fetch data from the dedicated radar2 route.\n\t * The base class setControls() builds filter UI and sets this.filter but\n\t * skips the data fetch for profileRadar2 (see profilePlot.ts).\n\t */\n\tasync setControls(additionalInputs: any[] = []) {\n\t\tawait super.setControls(additionalInputs)\n\t\tthis.data = await this.fetchAggregatedScores()\n\t\tif (this.data && 'error' in this.data) throw this.data.error\n\t}\n\n\tprivate async fetchAggregatedScores() {\n\t\t// No facilityTW \u2014 server derives it from term ID prefixes in the request.\n\t\t// scoreTerms stripped to { term: { id }, q } only \u2014 server fills the rest via termjsonByOneid.\n\t\treturn dofetch3('termdb/profileRadar2Scores', {\n\t\t\tbody: {\n\t\t\t\tgenome: this.state.vocab.genome,\n\t\t\t\tdslabel: this.state.vocab.dslabel,\n\t\t\t\tscoreTerms: this.scoreTerms.map((t: any) => ({\n\t\t\t\t\tscore: { term: { id: t.score.term.id }, q: t.score.q },\n\t\t\t\t\tmaxScore: typeof t.maxScore === 'number' ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }\n\t\t\t\t})),\n\t\t\t\tfilterByUserSites: this.settings?.filterByUserSites,\n\t\t\t\tfilter: this.filter\n\t\t\t}\n\t\t})\n\t}\n\n\tplot() {\n\t\tconst { radarG, rows, data, data2 } = this.createSvgAndGrid()\n\t\tthis.drawLines(radarG, data, data2)\n\t\tthis.drawPercentLabels(radarG)\n\t\tthis.drawTableAndLegend(rows)\n\t}\n\n\tprivate createSvgAndGrid() {\n\t\tconst config = this.config\n\t\tconst width = this.isComparison ? 1000 : 1050\n\t\tconst height = 650\n\t\tthis.dom.svg = this.dom.plotDiv\n\t\t\t.append('div')\n\t\t\t.style('display', 'inline-block')\n\t\t\t.append('svg')\n\t\t\t.attr('width', width)\n\t\t\t.attr('height', height)\n\t\tconst rightDiv = this.dom.plotDiv\n\t\t\t.append('div')\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('vertical-align', 'top')\n\t\t\t.style('margin-top', '140px')\n\t\t\t.style('margin-right', '20px')\n\t\tthis.dom.tableDiv = rightDiv.append('div').attr('data-testid', 'sjpp-profileRadar2-data-table')\n\n\t\tconst x = 300\n\t\tconst y = 310\n\t\tthis.dom.svg\n\t\t\t.append('text')\n\t\t\t.attr('transform', `translate(60, 40)`)\n\t\t\t.attr('font-weight', 'bold')\n\t\t\t.attr('font-size', '0.9rem')\n\t\t\t.text(config.title)\n\n\t\tconst radarG = this.dom.svg.append('g').attr('transform', `translate(${x},${y})`)\n\t\tthis.radarG = radarG\n\t\tthis.legendG = this.dom.svg\n\t\t\t.append('g')\n\t\t\t.attr('data-testid', 'sjpp-profileRadar2-legend')\n\t\t\t.attr('transform', `translate(${x + 340},${y - 120})`)\n\t\tthis.filterG = this.dom.svg.append('g').attr('transform', `translate(${x + 340},${y - 20})`)\n\t\tthis.noteG = this.dom.svg.append('g').attr('transform', `translate(20, ${y + 150})`)\n\n\t\tfor (let i = 0; i <= 10; i++) this.drawPolygon(i * 10)\n\n\t\t// Populate per-module arc slices + compute percentages + build rows table.\n\t\t// data / data2 may contain `null` for modules the server omitted (no eligible data).\n\t\t// `.defined()` on the lineGenerator turns those into polygon gaps instead of NaN.\n\t\tconst rows: any[] = []\n\t\tconst data: (number[] | null)[] = [] // term1 vertices\n\t\tconst data2: (number[] | null)[] = [] // term2 vertices\n\t\tconst angle = this.angle!\n\t\tlet i = 0\n\t\tfor (const { module, term1, term2 } of config.terms) {\n\t\t\tconst iangle = i * angle - Math.PI / 2\n\t\t\tconst raw1 = this.getPercentage(term1)\n\t\t\tconst raw2 = this.getPercentage(term2)\n\t\t\t// Treat undefined/null/NaN as missing. A real zero score remains a valid data point.\n\t\t\tconst p1: number | null = Number.isFinite(raw1) ? (raw1 as number) : null\n\t\t\tconst p2: number | null = Number.isFinite(raw2) ? (raw2 as number) : null\n\n\t\t\tthis.radarG\n\t\t\t\t.append('path')\n\t\t\t\t.datum({ module, percentage1: p1, percentage2: p2 })\n\t\t\t\t.attr('fill', 'transparent')\n\t\t\t\t.attr(\n\t\t\t\t\t'd',\n\t\t\t\t\tthis.arcGenerator({\n\t\t\t\t\t\touterRadius: this.radius,\n\t\t\t\t\t\tstartAngle: i * angle - angle / 2,\n\t\t\t\t\t\tendAngle: (i + 1) * angle - angle / 2\n\t\t\t\t\t})\n\t\t\t\t)\n\t\t\t\t.on('click', event => this.onMouseOver(event))\n\n\t\t\tif (p2 !== null) this.addDataPoint('term2', p2, iangle, data2)\n\t\t\telse data2.push(null)\n\n\t\t\tif (p1 !== null) this.addDataPoint('term1', p1, iangle, data)\n\t\t\telse data.push(null)\n\n\t\t\tconst color = term1.score.term.color\n\t\t\tconst bothPresent = p1 !== null && p2 !== null\n\t\t\tconst diff = bothPresent ? Math.abs(p1 - p2) : null\n\t\t\tconst diffRow: any = diff !== null ? { value: diff } : { value: '\u2014' }\n\t\t\tif (diff !== null && diff >= 20) diffRow.color = (p2 as number) > (p1 as number) ? 'red' : 'blue'\n\t\t\trows.push([\n\t\t\t\t{ color, disabled: true },\n\t\t\t\t{ value: module },\n\t\t\t\t{ value: p1 !== null ? p1 : '\u2014' },\n\t\t\t\t{ value: p2 !== null ? p2 : '\u2014' },\n\t\t\t\tdiffRow\n\t\t\t])\n\n\t\t\tthis.drawModuleLabel(module, iangle)\n\t\t\ti++\n\t\t}\n\n\t\treturn { radarG, rows, data, data2 }\n\t}\n\n\tprivate drawLines(radarG: any, data: (number[] | null)[], data2: (number[] | null)[]) {\n\t\t// Close each polygon back to its FIRST DEFINED vertex so the first module's gap (if any)\n\t\t// doesn't leak into the closing segment.\n\t\tconst closePolygon = (arr: (number[] | null)[]) => {\n\t\t\tconst firstDefined = arr.find(v => v !== null)\n\t\t\tif (firstDefined) arr.push(firstDefined)\n\t\t}\n\t\tclosePolygon(data)\n\t\tclosePolygon(data2)\n\t\tconst color1 = 'blue'\n\t\tconst color2 = 'gray'\n\n\t\tradarG\n\t\t\t.append('g')\n\t\t\t.append('path')\n\t\t\t.style('stroke', color2)\n\t\t\t.attr('fill', 'none')\n\t\t\t.style('stroke-dasharray', '5, 5')\n\t\t\t.attr('stroke-width', '2px')\n\t\t\t.attr('d', this.lineGenerator(data2 as any))\n\t\tradarG\n\t\t\t.append('g')\n\t\t\t.append('path')\n\t\t\t.style('stroke', color1)\n\t\t\t.attr('fill', 'none')\n\t\t\t.attr('stroke-width', '2px')\n\t\t\t.attr('d', this.lineGenerator(data as any))\n\t}\n\n\tprivate drawPercentLabels(radarG: any) {\n\t\tfor (let i = 0; i <= 10; i++) {\n\t\t\tconst percent = i * 10\n\t\t\tradarG\n\t\t\t\t.append('text')\n\t\t\t\t.attr('transform', `translate(0, ${(-percent / 100) * this.radius - 2})`)\n\t\t\t\t.attr('text-anchor', 'end')\n\t\t\t\t.style('font-size', '0.8rem')\n\t\t\t\t.text(`${percent}%`)\n\t\t\t\t.attr('pointer-events', 'none')\n\t\t}\n\t}\n\n\tprivate drawTableAndLegend(rows: any[]) {\n\t\tconst config = this.config\n\t\tconst columns = [\n\t\t\t{ label: 'Color' },\n\t\t\t{ label: 'Module' },\n\t\t\t{ label: config.term1.abbrev },\n\t\t\t{ label: config.term2.abbrev },\n\t\t\t{ label: 'Difference*' }\n\t\t]\n\n\t\tif (!this.isComparison) {\n\t\t\trenderTable({\n\t\t\t\trows,\n\t\t\t\tcolumns,\n\t\t\t\tdiv: this.dom.tableDiv,\n\t\t\t\tshowLines: true,\n\t\t\t\tresize: true,\n\t\t\t\tmaxHeight: '60vh'\n\t\t\t})\n\t\t\tthis.addDifferenceNote(\n\t\t\t\t`* Difference between ${config.term1.abbrev} and ${config.term2.abbrev}. If bigger than 20 and positive shown in blue, if negative shown in red.`\n\t\t\t)\n\n\t\t\tthis.legendG.append('text').attr('text-anchor', 'left').style('font-weight', 'bold').text('Legend')\n\t\t\tlet abbrev = config.term1.abbrev ? `(${config.term1.abbrev})` : ''\n\t\t\tthis.addRadarLegendItem(`${config.term1.name} ${abbrev}`, 'blue', 0, 'none')\n\t\t\tabbrev = config.term2.abbrev ? `(${config.term2.abbrev})` : ''\n\t\t\tthis.addRadarLegendItem(`${config.term2.name} ${abbrev}`, 'gray', 1, '5, 5')\n\t\t\tif (this.state.activeCohort == ABBREV_COHORT) this.addEndUserImpressionNote(this.noteG)\n\t\t\telse this.addPOCNote(this.noteG)\n\t\t}\n\t\tthis.addFilterLegend()\n\t}\n\n\tprivate addDifferenceNote(text: string) {\n\t\tconst noteDiv = this.dom.tableDiv\n\t\t\t.append('div')\n\t\t\t.attr('data-testid', 'sjpp-profileRadar2-difference-note')\n\t\t\t.style('display', 'flex')\n\t\t\t.style('align-items', 'center')\n\t\t\t.style('gap', '6px')\n\t\t\t.style('margin-top', '8px')\n\t\t\t.style('font-size', '0.85em')\n\t\t\t.style('font-style', 'italic')\n\t\t\t.style('color', '#555')\n\t\tnoteDiv\n\t\t\t.append('span')\n\t\t\t.attr('aria-hidden', 'true')\n\t\t\t.style('font-style', 'normal')\n\t\t\t.style('font-size', '1.1em')\n\t\t\t.text('\u24D8')\n\t\tnoteDiv.append('span').text(text)\n\t}\n\n\tprivate drawModuleLabel(module: string, iangle: number) {\n\t\tconst radius = this.radius\n\t\tconst leftSide = iangle > Math.PI / 2 && iangle <= (3 / 2) * Math.PI\n\t\tconst dx = radius * 1.1 * Math.cos(iangle)\n\t\tlet dy = radius * 1.1 * Math.sin(iangle) - 10\n\t\tconst textElem = this.radarG.append('text').attr('x', `${dx}px`).attr('y', `${dy}px`).attr('font-size', '0.9em')\n\t\tconst texts = module.split(' ')\n\t\tlet span: any\n\t\tfor (const text of texts) {\n\t\t\tif (text != 'and') {\n\t\t\t\tdy += 15\n\t\t\t\tspan = textElem.append('tspan').attr('x', `${dx}px`).attr('y', `${dy}px`).text(text)\n\t\t\t} else span.append('tspan').text(' and')\n\t\t}\n\t\tif (leftSide) textElem.attr('text-anchor', 'end')\n\t}\n\n\tprivate addDataPoint(field: 'term1' | 'term2', percentage: number, iangle: number, data: (number[] | null)[]) {\n\t\tconst iradius = (percentage / 100) * this.radius\n\t\tconst x = iradius * Math.cos(iangle)\n\t\tconst y = iradius * Math.sin(iangle)\n\t\tconst color = field == 'term1' ? 'blue' : '#aaa'\n\t\tthis.radarG.append('g').attr('transform', `translate(${x}, ${y})`).append('circle').attr('r', 4).attr('fill', color)\n\t\tdata.push([x, y])\n\t}\n\n\tprivate drawPolygon(percent: number) {\n\t\tconst data: number[][] = []\n\t\tfor (let i = 0; i < this.config.terms.length; i++) {\n\t\t\tconst iangle = i * this.angle! - Math.PI / 2\n\t\t\tconst iradius = (percent / 100) * this.radius\n\t\t\tconst x = iradius * Math.cos(iangle)\n\t\t\tconst y = iradius * Math.sin(iangle)\n\t\t\tdata.push([x, y])\n\t\t}\n\t\tdata.push(data[0])\n\t\tthis.radarG\n\t\t\t.append('g')\n\t\t\t.append('path')\n\t\t\t.style('stroke', '#aaa')\n\t\t\t.attr('fill', 'none')\n\t\t\t.attr('d', this.lineGenerator(data))\n\t\t\t.style('opacity', '0.5')\n\t}\n\n\tprivate addRadarLegendItem(text: string, color: string, index: number, strokeDash: string) {\n\t\tconst step = 25\n\t\tconst y = step + index * step\n\t\tconst x = 35\n\t\tthis.legendG\n\t\t\t.append('path')\n\t\t\t.attr('stroke', color)\n\t\t\t.style('stroke-dasharray', strokeDash)\n\t\t\t.attr('stroke-width', '2px')\n\t\t\t.attr(\n\t\t\t\t'd',\n\t\t\t\tthis.lineGenerator([\n\t\t\t\t\t[0, y - 5],\n\t\t\t\t\t[x, y - 5]\n\t\t\t\t])\n\t\t\t)\n\t\tthis.legendG\n\t\t\t.append('g')\n\t\t\t.attr('transform', `translate(0, ${y - 5})`)\n\t\t\t.append('circle')\n\t\t\t.attr('r', 4)\n\t\t\t.attr('fill', color)\n\t\tthis.legendG\n\t\t\t.append('text')\n\t\t\t.attr('font-size', '0.9em')\n\t\t\t.attr('transform', `translate(${x + 5}, ${y})`)\n\t\t\t.attr('text-anchor', 'left')\n\t\t\t.append('tspan')\n\t\t\t.text(text)\n\t}\n\n\tonMouseOver(event) {\n\t\tconst d = event.target.__data__\n\t\tif (d?.module) {\n\t\t\tconst label1 = this.config.term1.name\n\t\t\tconst label2 = this.config.term2.name\n\t\t\tconst menu = this.tip.clear()\n\t\t\tmenu.d.append('div').style('font-weight', 'bold').text(d.module)\n\t\t\tconst table = menu.d.append('table')\n\t\t\tlet tr = table.append('tr')\n\t\t\ttr.append('td').text(label1)\n\t\t\ttr.append('td').text(d.percentage1 ?? '\u2014')\n\t\t\ttr = table.append('tr')\n\t\t\ttr.append('td').text(label2)\n\t\t\ttr.append('td').text(d.percentage2 ?? '\u2014')\n\t\t\tmenu.show(event.clientX, event.clientY, true, true)\n\t\t} else this.onMouseOut(event)\n\t}\n}\n\nexport async function getPlotConfig(opts, app, _activeCohort) {\n\ttry {\n\t\tconst activeCohort = _activeCohort === undefined ? app.getState().activeCohort : _activeCohort\n\t\tconst defaults = await getProfilePlotConfig(activeCohort, app, opts)\n\t\tif (!defaults) throw 'default config not found in termdbConfig.plotConfigByCohort.profileRadar2'\n\t\tdefaults.settings = { profileRadar2: getDefaultProfilePlotSettings() }\n\t\tconst config = copyMerge(structuredClone(defaults), opts)\n\t\tconfig.settings.controls = { isOpen: false }\n\t\tconst twlst: any[] = []\n\t\tfor (const row of config.terms) {\n\t\t\trow.term1.score.q = { mode: 'continuous' }\n\t\t\ttwlst.push(row.term1.score)\n\t\t\tif (row.term1.maxScore.id) {\n\t\t\t\trow.term1.maxScore.q = { mode: 'continuous' }\n\t\t\t\ttwlst.push(row.term1.maxScore)\n\t\t\t}\n\t\t\trow.term2.score.q = { mode: 'continuous' }\n\t\t\ttwlst.push(row.term2.score)\n\t\t\tif (row.term2.maxScore.id) {\n\t\t\t\trow.term2.maxScore.q = { mode: 'continuous' }\n\t\t\t\ttwlst.push(row.term2.maxScore)\n\t\t\t}\n\t\t}\n\t\tawait fillTwLst(twlst, app.vocabApi)\n\t\treturn config\n\t} catch (e) {\n\t\tthrow `${e} [profileRadar2 getPlotConfig()]`\n\t}\n}\n\nexport { makeChartBtnMenu }\n\nexport const profileRadar2Init = getCompInit(ProfileRadar2)\n// this alias will allow abstracted dynamic imports\nexport const componentInit = profileRadar2Init\n"],
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