@sjcrh/proteinpaint-client 2.190.2 → 2.191.2

package/dist/chunk-SQWEREGE.js

@@ -0,0 +1,222 @@
+import {
+  appInit
+} from "./chunk-NVX26LFC.js";
+import {
+  getDefaultViolinSettings
+} from "./chunk-DC4KD6FJ.js";
+import {
+  select_default
+} from "./chunk-I6Y4O3RR.js";
+
+// plots/regression.inputs.values.table.js
+var row_hover_bgcolor = "#fff6dc";
+var InputValuesTable = class {
+  constructor(opts) {
+    this.opts = opts;
+    this.input = opts.input;
+    setRenderers(this);
+    this.setDOM(opts.holder);
+  }
+  main() {
+    try {
+      const term = this.input.term;
+      if (!term || !this.input.termStatus) {
+        this.dom.holder.style("display", "none");
+        this.dom.loading_div.style("display", "none");
+        return;
+      } else if (term) {
+        this.dom.holder.style("display", "block");
+        this.dom.loading_div.style("display", "block");
+        this.updateValueCount();
+        this.dom.loading_div.style("display", "none");
+        this.render();
+        return;
+      }
+    } catch (e) {
+      this.dom.loading_div.style("display", "none");
+      throw e;
+    }
+  }
+  updateValueCount() {
+    const i = this.input;
+    try {
+      if (i.pill && i.pill.validateQ) {
+        i.pill.validateQ({
+          term: i.term.term,
+          q: i.term.q,
+          sampleCounts: i.termStatus.sampleCounts
+        });
+      }
+    } catch (e) {
+      i.term.error = e;
+    }
+  }
+};
+function setRenderers(self) {
+  self.setDOM = (holder) => {
+    self.dom = {
+      holder: holder.style("margin", "10px").style("font-size", ".8em").style("text-align", "left").style("color", "#999"),
+      loading_div: holder.append("div").text("Loading..").style("display", "none"),
+      top_info_div: holder.append("div").style("padding-bottom", "5px"),
+      violin_div: holder.append("div").style("color", "black").style("padding-top", "5px"),
+      table_div: holder.append("table").style("margin", "5px 0px 15px 0px").style("border-collapse", "collapse").style("color", "black"),
+      bottom_info_div: holder.append("div"),
+      excluded_div: holder.append("table").style("display", "none").style("margin", "5px 10px").style("border-collapse", "collapse")
+    };
+  };
+  self.render = async () => {
+    const input = self.input;
+    renderTopInfo(input);
+    await renderValuesTable(input);
+    renderBottomInfo(input);
+    renderExcludedValues(input);
+  };
+  function renderTopInfo(input) {
+    if (input.termStatus.topInfoStatus?.length) {
+      self.dom.top_info_div.style("display", "block").html(input.termStatus.topInfoStatus.join("<br>"));
+    } else {
+      self.dom.top_info_div.style("display", "none");
+    }
+  }
+  async function renderValuesTable(input) {
+    if (input.term.q.mode == "continuous" || input.term.q.mode == "spline") {
+      self.dom.violin_div.style("display", "block");
+      self.dom.table_div.style("display", "none");
+      if (self.plotAppApi) {
+        const action = {
+          type: "app_refresh",
+          state: { termfilter: structuredClone(self.input.parent.state?.termfilter) },
+          subactions: [
+            {
+              type: "plot_edit",
+              id: self.violinApi.id,
+              config: {
+                term: input.term
+              }
+            }
+          ]
+        };
+        self.plotAppApi.dispatch(action);
+      } else {
+        const opts = {
+          holder: self.dom.violin_div,
+          vocabApi: self.input.parent.app.vocabApi,
+          state: {
+            vocab: {
+              genome: self.input.parent.app.vocabApi.genome,
+              dslabel: self.input.parent.app.vocabApi.dslabel
+            },
+            termfilter: structuredClone(self.input.parent.state?.termfilter),
+            plots: [
+              {
+                chartType: "violin",
+                term: input.term,
+                settings: {
+                  violin: getDefaultViolinSettings(null, {
+                    svgw: 350,
+                    axisHeight: 25,
+                    rightMargin: 10,
+                    datasymbol: "rug",
+                    radius: 8,
+                    plotThickness: 80
+                  })
+                }
+              }
+            ]
+          },
+          // global options for plotAppApi
+          // opts.violin will apply to all violin plots within the plotApp
+          // rx will pass options by component type, which are not tracked in state
+          // examples are callbacks, event listeners, etc
+          violin: {
+            mode: "minimal"
+          }
+        };
+        self.plotAppApi = await appInit(opts);
+        const plotId = self.plotAppApi.getState().plots[0].id;
+        self.violinApi = self.plotAppApi.getComponents(`plots.${plotId}`);
+      }
+    } else {
+      self.dom.violin_div.style("display", "none");
+      const data = input.termStatus.sampleCounts;
+      if (!data || !data.length) {
+        self.dom.table_div.style("display", "none");
+        return;
+      }
+      self.dom.table_div.style("display", "block");
+      const l = self.input.orderedLabels;
+      const sortFxn = l && l.length ? (a, b) => l.indexOf(a.label) - l.indexOf(b.label) : (a, b) => b.samplecount - a.samplecount;
+      const tr_data = data.sort(sortFxn);
+      const maxCount = Math.max(...tr_data.map((v) => v.samplecount), 0);
+      tr_data.forEach((v) => v.bar_width_frac = Number((1 - (maxCount - v.samplecount) / maxCount).toFixed(4)));
+      self.dom.table_div.selectAll("tr").remove();
+      const trs = self.dom.table_div.selectAll("tr").data(tr_data, (b) => b.key);
+      trs.enter().append("tr").each(trEnter);
+    }
+  }
+  function renderBottomInfo(input) {
+    if (input.termStatus.bottomSummaryStatus) {
+      self.dom.bottom_info_div.style("display", "block").html(input.termStatus.bottomSummaryStatus);
+    } else {
+      self.dom.bottom_info_div.style("display", "none");
+    }
+  }
+  function renderExcludedValues(input) {
+    const data = input.termStatus.excludeCounts;
+    if (!data || !data.length) {
+      self.dom.excluded_div.style("display", "none");
+      return;
+    }
+    self.dom.excluded_div.style("display", "block").selectAll("tr").remove();
+    const trs = self.dom.excluded_div.selectAll("tr").data(data, (b) => b.key);
+    trs.enter().append("tr").each(trEnter);
+    self.dom.excluded_div.selectAll("td").style("color", "#999");
+  }
+  function trEnter(item) {
+    const tr = select_default(this);
+    const input = this.parentNode.__data__;
+    const t = input.term;
+    const maxBarWidth = 150;
+    tr.style("text-align", "left").style("cursor", input.termStatus.allowToSelectRefGrp ? "pointer" : "default");
+    const tdSpacing = "1px 10px 1px 0px";
+    tr.append("td").style("padding", tdSpacing).style("text-align", "left").style("color", "black").text(item.samplecount !== void 0 ? "n=" + item.samplecount : "");
+    tr.append("td").style("padding", tdSpacing).style("text-align", "left").style("color", "black").text(item.label);
+    const bar_td = tr.append("td").style("padding", tdSpacing);
+    const barWidth = maxBarWidth * item.bar_width_frac;
+    bar_td.append("div").style("margin", tdSpacing).style("width", barWidth + "px").style("height", "15px").style("background-color", "#ddd");
+    addTrBehavior({ input, item, tr, rendered: false });
+  }
+  function addTrBehavior({ input, item, tr, rendered }) {
+    if (!item.bar_width_frac) return;
+    const t = input.term;
+    const hover_flag = input.termStatus.allowToSelectRefGrp;
+    let ref_text;
+    if (rendered) {
+      tr.style("background", "white");
+      ref_text = select_default(tr.node().lastChild).select("div").style("display", item.key === t.refGrp && hover_flag ? "inline-block" : "none").style("border", item.key === t.refGrp && hover_flag ? "1px solid #bbb" : "");
+    } else if (input.term.q.mode != "cutoff") {
+      const reference_td = tr.append("td").style("padding", "1px 5px").style("text-align", "left");
+      ref_text = reference_td.append("div").style("display", item.key === t.refGrp && hover_flag ? "inline-block" : "none").style("padding", "2px 10px").style("border", item.key === t.refGrp && hover_flag ? "1px solid #bbb" : "").style("border-radius", "10px").style("color", "#999").style("font-size", ".7em").text("REFERENCE");
+      if (hover_flag) {
+        tr.on("mouseover", () => {
+          if (t.refGrp !== item.key) {
+            tr.style("background", row_hover_bgcolor);
+            ref_text.style("display", "inline-block").style("border", "").text("Set as reference");
+          } else tr.style("background", "white");
+        }).on("mouseout", () => {
+          tr.style("background", "white");
+          if (t.refGrp !== item.key) ref_text.style("display", "none");
+        }).on("click", () => {
+          t.refGrp = item.key;
+          ref_text.style("border", "1px solid #bbb").text("REFERENCE");
+          self.opts.callback(t);
+        });
+      }
+    }
+  }
+}
+
+export {
+  InputValuesTable
+};
+//# sourceMappingURL=chunk-SQWEREGE.js.map

package/dist/chunk-SQWEREGE.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/regression.inputs.values.table.js"],
+  "sourcesContent": ["import { select } from 'd3-selection'\nimport { getDefaultViolinSettings } from './violin.js'\nimport { appInit } from './plot.app'\n\n/*\n\tdom elements for values table\n\tholder // main holder\n\t\tloading_div // loading message while updating term info\n\t\ttop_info_div // top info about scale + knots + promopt to select ref group\n\t\tviolin_div // violin plot of values (used when .mode=continuous)\n\t\ttable_div // tabular bar chart of values (used when .mode != continuous)\n\t\tbottom_info_div // total included and excluded samples\n\t\texcluded_div // excluded values with samplecount\n*/\n\nconst row_hover_bgcolor = '#fff6dc'\n\nexport class InputValuesTable {\n\tconstructor(opts) {\n\t\t// opts {holder, input, callback}\n\t\tthis.opts = opts\n\t\tthis.input = opts.input\n\t\tsetRenderers(this)\n\t\tthis.setDOM(opts.holder)\n\t}\n\n\tmain() {\n\t\ttry {\n\t\t\tconst term = this.input.term\n\t\t\t// may allow the values table even if there is a variable error,\n\t\t\t// in case it helps clarify the error message such as having\n\t\t\t// not exactly two samplecount bars available for a binary outcome term\n\n\t\t\tif (!term || !this.input.termStatus) {\n\t\t\t\tthis.dom.holder.style('display', 'none')\n\t\t\t\tthis.dom.loading_div.style('display', 'none')\n\t\t\t\treturn\n\t\t\t} else if (term) {\n\t\t\t\tthis.dom.holder.style('display', 'block')\n\t\t\t\tthis.dom.loading_div.style('display', 'block')\n\t\t\t\tthis.updateValueCount()\n\t\t\t\tthis.dom.loading_div.style('display', 'none')\n\t\t\t\tthis.render()\n\t\t\t\treturn\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tthis.dom.loading_div.style('display', 'none')\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tupdateValueCount() {\n\t\tconst i = this.input\n\t\ttry {\n\t\t\t/* TODO: may need to move validateQ out of a ts.pill */\n\t\t\tif (i.pill && i.pill.validateQ) {\n\t\t\t\ti.pill.validateQ({\n\t\t\t\t\tterm: i.term.term,\n\t\t\t\t\tq: i.term.q,\n\t\t\t\t\tsampleCounts: i.termStatus.sampleCounts\n\t\t\t\t})\n\t\t\t}\n\t\t} catch (e) {\n\t\t\ti.term.error = e\n\t\t}\n\t}\n}\n\nfunction setRenderers(self) {\n\tself.setDOM = holder => {\n\t\tself.dom = {\n\t\t\tholder: holder\n\t\t\t\t.style('margin', '10px')\n\t\t\t\t.style('font-size', '.8em')\n\t\t\t\t.style('text-align', 'left')\n\t\t\t\t.style('color', '#999'),\n\n\t\t\tloading_div: holder.append('div').text('Loading..').style('display', 'none'),\n\n\t\t\ttop_info_div: holder.append('div').style('padding-bottom', '5px'),\n\n\t\t\tviolin_div: holder.append('div').style('color', 'black').style('padding-top', '5px'),\n\n\t\t\ttable_div: holder\n\t\t\t\t.append('table')\n\t\t\t\t.style('margin', '5px 0px 15px 0px')\n\t\t\t\t.style('border-collapse', 'collapse')\n\t\t\t\t.style('color', 'black'),\n\n\t\t\tbottom_info_div: holder.append('div'),\n\n\t\t\texcluded_div: holder\n\t\t\t\t.append('table')\n\t\t\t\t.style('display', 'none')\n\t\t\t\t.style('margin', '5px 10px')\n\t\t\t\t.style('border-collapse', 'collapse')\n\t\t}\n\t}\n\n\tself.render = async () => {\n\t\tconst input = self.input\n\n\t\t// render top info\n\t\trenderTopInfo(input)\n\n\t\t// render included values\n\t\tawait renderValuesTable(input)\n\n\t\t// render bottom info\n\t\trenderBottomInfo(input)\n\n\t\t// render excluded values\n\t\trenderExcludedValues(input)\n\t}\n\n\tfunction renderTopInfo(input) {\n\t\tif (input.termStatus.topInfoStatus?.length) {\n\t\t\tself.dom.top_info_div.style('display', 'block').html(input.termStatus.topInfoStatus.join('<br>'))\n\t\t} else {\n\t\t\tself.dom.top_info_div.style('display', 'none')\n\t\t}\n\t}\n\n\tasync function renderValuesTable(input) {\n\t\tif (input.term.q.mode == 'continuous' || input.term.q.mode == 'spline') {\n\t\t\t// continuous or spline mode\n\t\t\t// render values as violin plot\n\t\t\tself.dom.violin_div.style('display', 'block')\n\t\t\tself.dom.table_div.style('display', 'none')\n\t\t\tif (self.plotAppApi) {\n\t\t\t\t// violin plot already created, refresh the plot\n\t\t\t\tconst action = {\n\t\t\t\t\ttype: 'app_refresh',\n\t\t\t\t\tstate: { termfilter: structuredClone(self.input.parent.state?.termfilter) },\n\t\t\t\t\tsubactions: [\n\t\t\t\t\t\t{\n\t\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\t\tid: self.violinApi.id,\n\t\t\t\t\t\t\tconfig: {\n\t\t\t\t\t\t\t\tterm: input.term\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t]\n\t\t\t\t}\n\t\t\t\tself.plotAppApi.dispatch(action)\n\t\t\t} else {\n\t\t\t\t// violin plot does not exist, create the plot\n\t\t\t\tconst opts = {\n\t\t\t\t\tholder: self.dom.violin_div,\n\t\t\t\t\tvocabApi: self.input.parent.app.vocabApi,\n\t\t\t\t\tstate: {\n\t\t\t\t\t\tvocab: {\n\t\t\t\t\t\t\tgenome: self.input.parent.app.vocabApi.genome,\n\t\t\t\t\t\t\tdslabel: self.input.parent.app.vocabApi.dslabel\n\t\t\t\t\t\t},\n\t\t\t\t\t\ttermfilter: structuredClone(self.input.parent.state?.termfilter),\n\t\t\t\t\t\tplots: [\n\t\t\t\t\t\t\t{\n\t\t\t\t\t\t\t\tchartType: 'violin',\n\t\t\t\t\t\t\t\tterm: input.term,\n\t\t\t\t\t\t\t\tsettings: {\n\t\t\t\t\t\t\t\t\tviolin: getDefaultViolinSettings(null, {\n\t\t\t\t\t\t\t\t\t\tsvgw: 350,\n\t\t\t\t\t\t\t\t\t\taxisHeight: 25,\n\t\t\t\t\t\t\t\t\t\trightMargin: 10,\n\t\t\t\t\t\t\t\t\t\tdatasymbol: 'rug',\n\t\t\t\t\t\t\t\t\t\tradius: 8,\n\t\t\t\t\t\t\t\t\t\tplotThickness: 80\n\t\t\t\t\t\t\t\t\t})\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t]\n\t\t\t\t\t},\n\t\t\t\t\t// global options for plotAppApi\n\t\t\t\t\t// opts.violin will apply to all violin plots within the plotApp\n\t\t\t\t\t// rx will pass options by component type, which are not tracked in state\n\t\t\t\t\t// examples are callbacks, event listeners, etc\n\t\t\t\t\tviolin: {\n\t\t\t\t\t\tmode: 'minimal'\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tself.plotAppApi = await appInit(opts)\n\t\t\t\tconst plotId = self.plotAppApi.getState().plots[0].id\n\t\t\t\tself.violinApi = self.plotAppApi.getComponents(`plots.${plotId}`)\n\t\t\t}\n\t\t} else {\n\t\t\t// mode is neither continuous nor spline\n\t\t\t// render values as a tabular bar chart\n\t\t\tself.dom.violin_div.style('display', 'none')\n\t\t\tconst data = input.termStatus.sampleCounts\n\t\t\tif (!data || !data.length) {\n\t\t\t\tself.dom.table_div.style('display', 'none')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tself.dom.table_div.style('display', 'block')\n\t\t\tconst l = self.input.orderedLabels\n\t\t\tconst sortFxn =\n\t\t\t\tl && l.length ? (a, b) => l.indexOf(a.label) - l.indexOf(b.label) : (a, b) => b.samplecount - a.samplecount\n\t\t\tconst tr_data = data.sort(sortFxn)\n\n\t\t\tconst maxCount = Math.max(...tr_data.map(v => v.samplecount), 0)\n\t\t\ttr_data.forEach(v => (v.bar_width_frac = Number((1 - (maxCount - v.samplecount) / maxCount).toFixed(4))))\n\n\t\t\tself.dom.table_div.selectAll('tr').remove()\n\t\t\tconst trs = self.dom.table_div.selectAll('tr').data(tr_data, b => b.key)\n\n\t\t\t//trs.exit().remove()\n\t\t\t//trs.each(trUpdate)\n\t\t\ttrs.enter().append('tr').each(trEnter)\n\t\t}\n\t}\n\n\tfunction renderBottomInfo(input) {\n\t\tif (input.termStatus.bottomSummaryStatus) {\n\t\t\tself.dom.bottom_info_div.style('display', 'block').html(input.termStatus.bottomSummaryStatus)\n\t\t} else {\n\t\t\tself.dom.bottom_info_div.style('display', 'none')\n\t\t}\n\t}\n\n\tfunction renderExcludedValues(input) {\n\t\tconst data = input.termStatus.excludeCounts\n\t\tif (!data || !data.length) {\n\t\t\tself.dom.excluded_div.style('display', 'none')\n\t\t\treturn\n\t\t}\n\t\tself.dom.excluded_div.style('display', 'block').selectAll('tr').remove()\n\t\tconst trs = self.dom.excluded_div.selectAll('tr').data(data, b => b.key)\n\n\t\t//trs.exit().remove()\n\t\t//trs.each(trUpdate)\n\t\ttrs.enter().append('tr').each(trEnter)\n\n\t\tself.dom.excluded_div.selectAll('td').style('color', '#999')\n\t}\n\n\tfunction trEnter(item) {\n\t\tconst tr = select(this)\n\t\tconst input = this.parentNode.__data__\n\t\tconst t = input.term\n\t\tconst maxBarWidth = 150\n\n\t\ttr.style('text-align', 'left').style('cursor', input.termStatus.allowToSelectRefGrp ? 'pointer' : 'default')\n\n\t\tconst tdSpacing = '1px 10px 1px 0px'\n\t\t// sample count td\n\t\ttr.append('td')\n\t\t\t.style('padding', tdSpacing)\n\t\t\t.style('text-align', 'left')\n\t\t\t.style('color', 'black')\n\t\t\t.text(item.samplecount !== undefined ? 'n=' + item.samplecount : '')\n\n\t\t// label td\n\t\ttr.append('td').style('padding', tdSpacing).style('text-align', 'left').style('color', 'black').text(item.label)\n\n\t\t// sample count bar td\n\t\tconst bar_td = tr.append('td').style('padding', tdSpacing)\n\n\t\t// bar_width\n\t\tconst barWidth = maxBarWidth * item.bar_width_frac\n\t\tbar_td\n\t\t\t.append('div')\n\t\t\t.style('margin', tdSpacing)\n\t\t\t.style('width', barWidth + 'px')\n\t\t\t.style('height', '15px')\n\t\t\t.style('background-color', '#ddd')\n\n\t\taddTrBehavior({ input, item, tr, rendered: false })\n\t}\n\n\t/*\n\t// TODO: to use this function, need to add code that will take into account the order of the rows\n\tfunction trUpdate(item) {\n\t\tselect(this.firstChild).text(item.samplecount !== undefined ? 'n=' + item.samplecount : '')\n\t\tselect(this.firstChild.nextSibling).text(item.label)\n\n\t\tconst input = this.parentNode.__data__\n\t\tconst t = input.term\n\t\tlet rendered = true\n\t\tif ((t.q.mode == 'discrete' || t.q.mode == 'binary') && this.childNodes.length < 4) rendered = false\n\t\taddTrBehavior({ input, item, tr: select(this), rendered })\n\t}\n\t*/\n\n\tfunction addTrBehavior({ input, item, tr, rendered }) {\n\t\t// don't add tr effects for excluded values\n\t\tif (!item.bar_width_frac) return\n\n\t\tconst t = input.term\n\t\tconst hover_flag = input.termStatus.allowToSelectRefGrp\n\t\tlet ref_text\n\n\t\tif (rendered) {\n\t\t\ttr.style('background', 'white')\n\t\t\tref_text = select(tr.node().lastChild)\n\t\t\t\t.select('div')\n\t\t\t\t.style('display', item.key === t.refGrp && hover_flag ? 'inline-block' : 'none')\n\t\t\t\t.style('border', item.key === t.refGrp && hover_flag ? '1px solid #bbb' : '')\n\t\t} else if (input.term.q.mode != 'cutoff') {\n\t\t\tconst reference_td = tr.append('td').style('padding', '1px 5px').style('text-align', 'left')\n\n\t\t\tref_text = reference_td\n\t\t\t\t.append('div')\n\t\t\t\t.style('display', item.key === t.refGrp && hover_flag ? 'inline-block' : 'none')\n\t\t\t\t.style('padding', '2px 10px')\n\t\t\t\t.style('border', item.key === t.refGrp && hover_flag ? 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+  "names": []
+}

package/dist/chunk-TVADJLMF.js

@@ -0,0 +1,317 @@
+import {
+  TermTypeGroups,
+  dtTerms,
+  dtdnamethylation,
+  dtgeneexpression,
+  dtmetaboliteintensity,
+  dtproteomeabundance,
+  dtssgsea
+} from "./chunk-EBKERML3.js";
+
+// ../shared/types/dist/index.js
+var FlagStatus = {
+  Normal: 0,
+  Skipped: 1,
+  Flagged: 2,
+  Deleted: 3
+};
+var FeaturePrefixes = {
+  Star: "annotation-star-",
+  Square: "annotation-square-",
+  Border: "annotation-border-",
+  PredBorder: "prediction-border-"
+};
+var SelectionPrefixes = {
+  TileSelection: "ts_",
+  Prediction: "pred_",
+  Annotation: "anno_"
+};
+var FlagStatusMessages = {
+  [FlagStatus.Normal]: "",
+  [FlagStatus.Skipped]: "(Skipped)",
+  [FlagStatus.Flagged]: "(Flagged)"
+  // Didn't add Deleted to FlagStatusMessages because deleted annotations dont exist
+  // and deleted predictons are filtered out in proteinpaint/server/routes/aiProjectSelectedWSImages.ts around line 119
+};
+function createSelectionID(prefix, coordinates) {
+  return prefix + JSON.stringify(coordinates);
+}
+function checkSelectionType(tileSelection, suspectedPrefix) {
+  return tileSelection.id.startsWith(suspectedPrefix);
+}
+function createFeatureID(featurePrefix, coords) {
+  return featurePrefix + JSON.stringify(coords);
+}
+var WSImage = class {
+  constructor(filename) {
+    this.filename = filename;
+  }
+};
+function isErrorResponse(response) {
+  return "error" in response && "status" in response;
+}
+var CATEGORICAL = "categorical";
+var CONDITION = "condition";
+var DATE = "date";
+var DNA_METHYLATION = "dnaMethylation";
+var FLOAT = "float";
+var GENE_VARIANT = "geneVariant";
+var GENE_EXPRESSION = "geneExpression";
+var ISOFORM_EXPRESSION = "isoformExpression";
+var INTEGER = "integer";
+var METABOLITE_INTENSITY = "metaboliteIntensity";
+var MULTIVALUE = "multivalue";
+var SAMPLELST = "samplelst";
+var SINGLECELL_CELLTYPE = "singleCellCellType";
+var SINGLECELL_GENE_EXPRESSION = "singleCellGeneExpression";
+var SNP = "snp";
+var SNP_LIST = "snplst";
+var SNP_LOCUS = "snplocus";
+var SSGSEA = "ssGSEA";
+var SURVIVAL = "survival";
+var TERM_COLLECTION = "termCollection";
+var PROTEOME_ABUNDANCE = "proteomeAbundance";
+var PROTEOME_DAP = "proteomeDAP";
+var TermTypes = {
+  GENE_VARIANT,
+  GENE_EXPRESSION,
+  ISOFORM_EXPRESSION,
+  SSGSEA,
+  DNA_METHYLATION,
+  CATEGORICAL,
+  INTEGER,
+  FLOAT,
+  SNP,
+  SNP_LIST,
+  SNP_LOCUS,
+  CONDITION,
+  SURVIVAL,
+  SAMPLELST,
+  METABOLITE_INTENSITY,
+  PROTEOME_ABUNDANCE,
+  SINGLECELL_CELLTYPE,
+  SINGLECELL_GENE_EXPRESSION,
+  MULTIVALUE,
+  DATE,
+  TERM_COLLECTION
+};
+
+// ../shared/utils/dist/src/terms.js
+var ROOT_SAMPLE_TYPE = 1;
+var DEFAULT_SAMPLE_TYPE = 2;
+var NumericModes = {
+  continuous: "continuous",
+  discrete: "discrete"
+};
+var dtTermTypes = new Set(dtTerms.map((t) => t.type));
+for (const dtTermType of dtTermTypes) {
+  TermTypes[dtTermType.toUpperCase()] = dtTermType;
+}
+var NUMERIC_DICTIONARY_TERM = "numericDictTerm";
+var TermTypes2Dt = {
+  [GENE_EXPRESSION]: dtgeneexpression,
+  [SSGSEA]: dtssgsea,
+  [DNA_METHYLATION]: dtdnamethylation,
+  [METABOLITE_INTENSITY]: dtmetaboliteintensity,
+  [PROTEOME_ABUNDANCE]: dtproteomeabundance
+};
+var typeGroup = {
+  [CATEGORICAL]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [CONDITION]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [FLOAT]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [INTEGER]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [SAMPLELST]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [SURVIVAL]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [DATE]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [MULTIVALUE]: TermTypeGroups.DICTIONARY_VARIABLES,
+  [GENE_VARIANT]: TermTypeGroups.MUTATION_CNV_FUSION,
+  [SNP]: TermTypeGroups.SNP,
+  [SNP_LIST]: TermTypeGroups.SNP_LIST,
+  [SNP_LOCUS]: TermTypeGroups.SNP_LOCUS,
+  [GENE_EXPRESSION]: TermTypeGroups.GENE_EXPRESSION,
+  [ISOFORM_EXPRESSION]: TermTypeGroups.ISOFORM_EXPRESSION,
+  [SSGSEA]: TermTypeGroups.SSGSEA,
+  [DNA_METHYLATION]: TermTypeGroups.DNA_METHYLATION,
+  [METABOLITE_INTENSITY]: TermTypeGroups.METABOLITE_INTENSITY,
+  [PROTEOME_ABUNDANCE]: TermTypeGroups.PROTEOME_ABUNDANCE,
+  [TERM_COLLECTION]: TermTypeGroups.TERM_COLLECTION,
+  [SINGLECELL_CELLTYPE]: TermTypeGroups.SINGLECELL_CELLTYPE,
+  [SINGLECELL_GENE_EXPRESSION]: TermTypeGroups.SINGLECELL_GENE_EXPRESSION
+};
+var nonDictTypes = /* @__PURE__ */ new Set([
+  SNP,
+  SNP_LIST,
+  SNP_LOCUS,
+  GENE_EXPRESSION,
+  ISOFORM_EXPRESSION,
+  SSGSEA,
+  DNA_METHYLATION,
+  GENE_VARIANT,
+  METABOLITE_INTENSITY,
+  PROTEOME_ABUNDANCE,
+  SINGLECELL_CELLTYPE,
+  SINGLECELL_GENE_EXPRESSION
+]);
+for (const dtTermType of dtTermTypes) {
+  nonDictTypes.add(TermTypes[dtTermType.toUpperCase()]);
+}
+var numericTypes = /* @__PURE__ */ new Set([
+  INTEGER,
+  FLOAT,
+  GENE_EXPRESSION,
+  ISOFORM_EXPRESSION,
+  SSGSEA,
+  DNA_METHYLATION,
+  METABOLITE_INTENSITY,
+  PROTEOME_ABUNDANCE,
+  SINGLECELL_GENE_EXPRESSION,
+  DATE
+]);
+var dictionaryNumericTypes = /* @__PURE__ */ new Set([INTEGER, FLOAT, DATE]);
+var categoricalTypes = /* @__PURE__ */ new Set([CATEGORICAL, SNP]);
+var singleCellTerms = /* @__PURE__ */ new Set([SINGLECELL_CELLTYPE, SINGLECELL_GENE_EXPRESSION]);
+function isSingleCellTerm(term) {
+  if (!term) return false;
+  return singleCellTerms.has(term.type);
+}
+function isNumericTerm(term) {
+  if (!term) return false;
+  return numericTypes.has(term.type);
+}
+function isCategoricalTerm(term) {
+  if (!term) return false;
+  return categoricalTypes.has(term.type);
+}
+function isDictionaryType(type) {
+  return !isNonDictionaryType(type);
+}
+function isNonDictionaryType(type) {
+  if (!type) throw new Error("Type is not defined");
+  return nonDictTypes.has(type);
+}
+function isNumTermCollection(term) {
+  if (!term || !term.type) throw new Error("Term or term type is not defined");
+  return term.type === TERM_COLLECTION;
+}
+function equals(t1, t2) {
+  if (!t1) throw new Error("First term is not defined ");
+  if (!t2) throw new Error("Second term is not defined ");
+  if (t1.type !== t2.type) return false;
+  if (isDictionaryType(t1.type) && isDictionaryType(t2.type) && t1.type != SAMPLELST) return t1.id === t2.id;
+  switch (t1.type) {
+    case GENE_EXPRESSION:
+      return t1.gene == t2.gene;
+    case ISOFORM_EXPRESSION:
+      return t1.isoform == t2.isoform;
+    case SSGSEA:
+      return t1.id == t2.id;
+    case DNA_METHYLATION:
+      return t1.chr == t2.chr && t1.start == t2.start && t1.stop == t2.stop;
+    case METABOLITE_INTENSITY:
+    case PROTEOME_ABUNDANCE:
+      return t1.name == t2.name;
+    case GENE_VARIANT:
+      return t1.gene == t2.gene || t1.chr == t2.chr && t1.start == t2.start && t1.stop == t2.stop;
+    // TO DO: Add more cases
+    // case SNP_LIST:
+    // case SNP_LOCUS:
+    // case SAMPLELST:
+    default:
+      return false;
+  }
+}
+var typeMap = {
+  categorical: "Categorical",
+  condition: "Condition",
+  float: "Numerical",
+  integer: "Numerical",
+  geneExpression: "Gene Expression",
+  isoformExpression: "Isoform Expression",
+  ssGSEA: "Geneset Expression",
+  dnaMethylation: "DNA Methylation",
+  geneVariant: "Gene Variant",
+  metaboliteIntensity: "Metabolite Intensity",
+  proteomeAbundance: "Proteome Abundance",
+  proteomeDAP: "Proteome DAP",
+  multivalue: "Multi Value",
+  singleCellGeneExpression: "Single Cell, Gene Expression",
+  singleCellCellType: "Single Cell, Cell Type",
+  snplocus: "SNP Locus",
+  snp: "SNP",
+  snplst: "SNP List",
+  numericDictTerm: "Numeric Dictionary Term",
+  termCollection: "Term Collection"
+};
+function termType2label(type) {
+  return typeMap[type] || "Unknown term type";
+}
+function getDateFromNumber(value) {
+  const year = Math.floor(value);
+  const january1st = new Date(year, 0, 1);
+  const totalDays = getDaysInYear(year);
+  const time = Math.round((value - year) * totalDays) * oneDayTime;
+  const date = new Date(january1st.getTime() + time);
+  return date;
+}
+var oneDayTime = 24 * 60 * 60 * 1e3;
+function getDateStrFromNumber(value) {
+  const date = getDateFromNumber(value);
+  return date.toLocaleDateString("en-US", {
+    year: "numeric",
+    month: "long"
+  });
+}
+function getDaysInYear(year) {
+  const isLeap = new Date(year, 1, 29).getMonth() === 1;
+  const days = isLeap ? 366 : 365;
+  return days;
+}
+
+export {
+  FlagStatus,
+  FeaturePrefixes,
+  SelectionPrefixes,
+  FlagStatusMessages,
+  createSelectionID,
+  checkSelectionType,
+  createFeatureID,
+  WSImage,
+  isErrorResponse,
+  CATEGORICAL,
+  DATE,
+  DNA_METHYLATION,
+  FLOAT,
+  GENE_VARIANT,
+  GENE_EXPRESSION,
+  ISOFORM_EXPRESSION,
+  INTEGER,
+  METABOLITE_INTENSITY,
+  SINGLECELL_CELLTYPE,
+  SINGLECELL_GENE_EXPRESSION,
+  SNP,
+  SSGSEA,
+  TERM_COLLECTION,
+  PROTEOME_ABUNDANCE,
+  PROTEOME_DAP,
+  TermTypes,
+  ROOT_SAMPLE_TYPE,
+  DEFAULT_SAMPLE_TYPE,
+  NumericModes,
+  dtTermTypes,
+  NUMERIC_DICTIONARY_TERM,
+  TermTypes2Dt,
+  typeGroup,
+  numericTypes,
+  dictionaryNumericTypes,
+  isSingleCellTerm,
+  isNumericTerm,
+  isCategoricalTerm,
+  isDictionaryType,
+  isNonDictionaryType,
+  isNumTermCollection,
+  equals,
+  termType2label,
+  getDateFromNumber,
+  getDateStrFromNumber
+};
+//# sourceMappingURL=chunk-TVADJLMF.js.map