@sjcrh/proteinpaint-client 2.190.2 → 2.191.2

package/dist/chunk-B3M3AZPL.js

@@ -1,215 +0,0 @@
-import {
-  make_radios
-} from "./chunk-UK3PTE3P.js";
-import {
-  initBinConfig
-} from "./chunk-STQU7XZV.js";
-import {
-  format
-} from "./chunk-OAWQ6LOO.js";
-
-// termsetting/handlers/NumRegularBinEditor.ts
-var NumRegularBinEditor = class {
-  constructor(editHandler) {
-    this.dom = {};
-    this.editHandler = editHandler;
-    this.opts = editHandler.opts;
-    this.tw = editHandler.tw;
-    this.termsetting = editHandler.termsetting;
-  }
-  render(div) {
-    if (this.q?.type != "regular-bin") this.q = this.getDefaultQ();
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-    if (this.dom.binsTable) {
-      if (this.editHandler.dom.binsDiv?.node().contains(this.dom.binsTable.node())) return;
-      else {
-        this.dom.binsTable.remove();
-        delete this.dom.binsTable;
-      }
-    }
-    const binsTable = div.append("table");
-    this.dom.binsTable = binsTable;
-    this.renderBinSizeInput(binsTable.append("tr"));
-    this.renderFirstBinInput(binsTable.append("tr"));
-    this.renderLastBinInputs(binsTable.append("tr"));
-  }
-  getDefaultQ() {
-    if (this.tw.q.type == "regular-bin") return JSON.parse(JSON.stringify(this.tw.q));
-    const t = this.tw.term;
-    const defaultQ = this.termsetting.opts.use_bins_less && t.bins?.less || t.bins?.default;
-    if (defaultQ) return JSON.parse(JSON.stringify(defaultQ));
-    const binConfig = initBinConfig(this.editHandler.handler.density_data);
-    return typeof binConfig == "string" ? JSON.parse(binConfig) : binConfig;
-  }
-  renderBinSizeInput(tr) {
-    const handler = this.editHandler.handler;
-    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("Bin Size");
-    const { min, max } = handler.density_data;
-    const q = this.q;
-    const origBinSize = q.bin_size;
-    this.dom.bin_size_input = tr.append("td").append("input").attr("type", "number").attr("value", "rounding" in q ? format(q.rounding || ".0f")(q.bin_size) : q.bin_size).attr("data-testid", "sjpp-num-reg-bin-editor-size").style("margin-left", "15px").style("width", "100px").style("color", () => q.bin_size > Math.abs(max - min) ? "red" : "").on("change", (event) => {
-      const newValue = Number(event.target.value);
-      if (newValue <= 0) {
-        window.alert("Please enter non-negative bin size.");
-        event.target.value = origBinSize;
-        return;
-      }
-      if ((max - min) / newValue > 100) {
-        window.alert("Bin size too small. Try setting a bigger value.");
-        event.target.value = origBinSize;
-        return;
-      }
-      q.bin_size = newValue;
-      this.dom.bin_size_input.style("color", q.bin_size > max - min ? "red" : newValue != origBinSize ? "green" : "");
-      handler.density.setBinLines(this.getBoundaryOpts());
-    });
-  }
-  renderFirstBinInput(tr) {
-    const handler = this.editHandler.handler;
-    const q = this.q;
-    if (!q.first_bin) throw "missing q.first_bin";
-    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("First Bin Stop");
-    const { min, max } = handler.density_data;
-    const origValue = q.first_bin.stop;
-    this.dom.first_stop_input = tr.append("td").append("input").attr("type", "number").property("value", origValue).style("width", "100px").style("margin-left", "15px").on("change", (event) => {
-      const newValue = Number(event.target.value);
-      if (newValue < min || newValue > max) {
-        window.alert("First bin stop value out of bound.");
-        event.target.value = origValue;
-        return;
-      }
-      this.q.first_bin.stop = newValue;
-      handler.density.setBinLines(this.getBoundaryOpts());
-    });
-    tr.append("td").append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by left-most red line. Drag to change.");
-  }
-  renderLastBinInputs(tr) {
-    const handler = this.editHandler.handler;
-    const q = this.q;
-    const isAuto = !q.last_bin || !Number.isFinite(q.last_bin.start);
-    tr.append("td").style("padding-top", "4px").style("opacity", 0.5).style("vertical-align", "top").text("Last Bin Start");
-    const td1 = tr.append("td").style("padding-left", "15px").style("vertical-align", "top");
-    const radio_div = td1.append("div");
-    const radios = make_radios({
-      holder: radio_div,
-      options: [
-        { label: "Automatic", value: "auto", checked: isAuto },
-        { label: "Fixed", value: "fixed", checked: !isAuto }
-      ],
-      callback: (v) => {
-        if (v == "auto") {
-          delete q.last_bin;
-          edit_div.style("display", "none");
-          handler.density.setBinLines(this.getBoundaryOpts());
-          return;
-        }
-        edit_div.style("display", "inline-block");
-        if (this.dom.last_start_input.property("value") == "") {
-          this.dom.last_start_input.property("value", this.tw.q.last_bin?.start || handler.density_data.max);
-        }
-        this.setLastBinStart();
-      }
-    });
-    this.dom.fixed_radio = radios.inputs.filter((_, i) => i === 1);
-    const edit_div = tr.append("td").append("div").style("display", isAuto ? "none" : "inline-block");
-    this.dom.last_start_input = edit_div.append("input").attr("type", "number").property("value", q.last_bin?.start || "").style("width", "100px").on("change", () => this.setLastBinStart());
-    edit_div.append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by right-most red line. Drag to change.");
-  }
-  setLastBinStart() {
-    const q = this.q;
-    const { max } = this.editHandler.handler.density_data;
-    const strInput = this.dom.last_start_input.property("value");
-    if (strInput === "") return;
-    const inputValue = Number(strInput);
-    if (q.first_bin && inputValue <= q.first_bin.stop) {
-      window.alert("Last bin start cannot be smaller than first bin stop.");
-      this.dom.last_start_input.property("value", max);
-      return;
-    }
-    if (inputValue > max) {
-      window.alert("Last bin start value out of bound.");
-      this.dom.last_start_input.property("value", max);
-      return;
-    }
-    if (q.last_bin) q.last_bin.start = inputValue;
-    else
-      q.last_bin = {
-        start: inputValue,
-        stopunbounded: true,
-        stopinclusive: false
-      };
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-  getBoundaryOpts() {
-    const { min, max } = this.editHandler.handler.density_data;
-    const binLinesStop = this.q.last_bin?.start ?? max + Math.abs(this.q.first_bin.stop) - Math.min(min, 0);
-    const boundaryValues = [];
-    for (let i = this.q.first_bin.stop; i <= binLinesStop; i = i + this.q.bin_size) {
-      if (this.q.last_bin?.start === i) break;
-      if (i > binLinesStop) boundaryValues[boundaryValues.length - 1].isLastVisibleLine = true;
-      const isDraggable = i === this.q.first_bin.stop || i === this.q.bin_size - 1;
-      boundaryValues.push({ x: i, isDraggable, movesWithLineIndex: !isDraggable ? 0 : -1 });
-    }
-    if (this.q.last_bin) {
-      boundaryValues.push({
-        x: this.q.last_bin.start,
-        isDraggable: true,
-        isLastVisibleLine: true,
-        movesWithLineIndex: -1
-      });
-    }
-    return {
-      values: boundaryValues,
-      callback: (d, value) => {
-        if (d.index === 0) {
-          this.dom.first_stop_input.property("value", value);
-          this.q.first_bin.stop = value;
-        } else {
-          this.editHandler.handler.dom.last_start_input.property("value", value);
-          if (this.q.last_bin) this.q.last_bin.start = value;
-        }
-      }
-    };
-  }
-  getEditedQ(destroyDom = true) {
-    const bin_size = this.dom.bin_size_input.property("value");
-    const config = {
-      mode: "discrete",
-      type: "regular-bin",
-      startinclusive: this.editHandler.boundaryInclusion == "startinclusive",
-      stopinclusive: this.editHandler.boundaryInclusion == "stopinclusive",
-      bin_size: Number(bin_size),
-      first_bin: {
-        startunbounded: true,
-        stop: Number(this.dom.first_stop_input.property("value"))
-      },
-      rounding: bin_size.includes(".") && !bin_size.endsWith(".") ? `.${bin_size.split(".")[1].length}f` : ".0f"
-    };
-    if (this.dom.fixed_radio.property("checked")) {
-      config.last_bin = {
-        start: Number(this.dom.last_start_input.property("value")),
-        stopunbounded: true
-      };
-    }
-    if (destroyDom) {
-      for (const name of Object.keys(this.dom)) {
-        this.dom[name].remove();
-        delete this.dom[name];
-      }
-    }
-    return config;
-  }
-  undoEdits() {
-    this.q = this.getDefaultQ();
-    this.dom.binsTable.selectAll("*").remove();
-    this.renderBinSizeInput(this.dom.binsTable.append("tr"));
-    this.renderFirstBinInput(this.dom.binsTable.append("tr"));
-    this.renderLastBinInputs(this.dom.binsTable.append("tr"));
-    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
-  }
-};
-
-export {
-  NumRegularBinEditor
-};
-//# sourceMappingURL=chunk-B3M3AZPL.js.map

package/dist/chunk-B3M3AZPL.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../termsetting/handlers/NumRegularBinEditor.ts"],
-  "sourcesContent": ["import { format } from 'd3-format'\n//import { setDensityPlot } from './density'\nimport { make_radios } from '#dom'\nimport initBinConfig from '#shared/termdb.initbinconfig.js'\nimport type { NumRegularBin } from '#tw'\nimport type { NumDiscreteEditor } from './NumDiscreteEditor.ts'\nimport type { BoundaryOpts, BoundaryValue, DraggedLineData } from './NumericDensity.ts'\nimport type { TermSetting } from '../TermSetting.ts'\nimport type { RegularNumericBinConfig } from '#types'\n\n// This is a bin editor for NumDiscreteEditor\n// NumericHandler (handler) -> NumDiscreteEditor (editor) -> NumRegularBinEditor (bin editor)\nexport class NumRegularBinEditor {\n\ttw: NumRegularBin\n\tq!: RegularNumericBinConfig\n\teditHandler: NumDiscreteEditor\n\ttermsetting: TermSetting\n\topts: any\n\tdom: {\n\t\t[elemName: string]: any\n\t} = {}\n\n\tconstructor(editHandler) {\n\t\tthis.editHandler = editHandler\n\t\tthis.opts = editHandler.opts\n\t\tthis.tw = editHandler.tw\n\t\tthis.termsetting = editHandler.termsetting\n\t}\n\n\trender(div) {\n\t\tif (this.q?.type != 'regular-bin') this.q = this.getDefaultQ()\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t\tif (this.dom.binsTable) {\n\t\t\tif (this.editHandler.dom.binsDiv?.node().contains(this.dom.binsTable.node())) return\n\t\t\telse {\n\t\t\t\tthis.dom.binsTable.remove()\n\t\t\t\tdelete this.dom.binsTable\n\t\t\t}\n\t\t}\n\t\tconst binsTable = div.append('table')\n\t\tthis.dom.binsTable = binsTable\n\t\tthis.renderBinSizeInput(binsTable.append('tr'))\n\t\tthis.renderFirstBinInput(binsTable.append('tr'))\n\t\tthis.renderLastBinInputs(binsTable.append('tr'))\n\t}\n\n\tgetDefaultQ(): RegularNumericBinConfig {\n\t\tif (this.tw.q.type == 'regular-bin') return JSON.parse(JSON.stringify(this.tw.q))\n\t\tconst t = this.tw.term\n\t\tconst defaultQ = (this.termsetting.opts.use_bins_less && t.bins?.less) || t.bins?.default\n\t\tif (defaultQ) return JSON.parse(JSON.stringify(defaultQ))\n\t\tconst binConfig = initBinConfig(this.editHandler.handler.density_data)\n\t\treturn typeof binConfig == 'string' ? JSON.parse(binConfig) : binConfig\n\t}\n\n\trenderBinSizeInput(tr: any) {\n\t\tconst handler = this.editHandler.handler\n\t\ttr.append('td').style('margin', '5px').style('opacity', 0.5).text('Bin Size')\n\n\t\tconst { min, max } = handler.density_data\n\t\tconst q = this.q\n\t\tconst origBinSize = q.bin_size\n\n\t\tthis.dom.bin_size_input = tr\n\t\t\t.append('td')\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.attr('value', 'rounding' in q ? format(q.rounding || '.0f')(q.bin_size) : q.bin_size)\n\t\t\t.attr('data-testid', 'sjpp-num-reg-bin-editor-size')\n\t\t\t.style('margin-left', '15px')\n\t\t\t.style('width', '100px')\n\t\t\t.style('color', () => (q.bin_size > Math.abs(max - min) ? 'red' : ''))\n\t\t\t.on('change', event => {\n\t\t\t\tconst newValue = Number(event.target.value)\n\t\t\t\t// must validate input value\n\t\t\t\tif (newValue <= 0) {\n\t\t\t\t\twindow.alert('Please enter non-negative bin size.')\n\t\t\t\t\t// must reset value in <input>, otherwise the wrong value will be recorded in self.q upon clicking Submit\n\t\t\t\t\tevent.target.value = origBinSize\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tif ((max - min) / newValue > 100) {\n\t\t\t\t\t// avoid rendering too many svg lines and lock up browser\n\t\t\t\t\twindow.alert('Bin size too small. Try setting a bigger value.')\n\t\t\t\t\tevent.target.value = origBinSize\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tq.bin_size = newValue\n\t\t\t\tthis.dom.bin_size_input.style('color', q.bin_size > max - min ? 'red' : newValue != origBinSize ? 'green' : '')\n\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t})\n\t}\n\n\trenderFirstBinInput(tr: any) {\n\t\tconst handler = this.editHandler.handler\n\t\tconst q = this.q\n\t\tif (!q.first_bin) throw 'missing q.first_bin'\n\n\t\ttr.append('td').style('margin', '5px').style('opacity', 0.5).text('First Bin Stop')\n\n\t\tconst { min, max } = handler.density_data\n\t\tconst origValue = q.first_bin.stop\n\n\t\tthis.dom.first_stop_input = tr\n\t\t\t.append('td')\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.property('value', origValue)\n\t\t\t.style('width', '100px')\n\t\t\t.style('margin-left', '15px')\n\t\t\t.on('change', event => {\n\t\t\t\tconst newValue = Number(event.target.value)\n\t\t\t\tif (newValue < min || newValue > max) {\n\t\t\t\t\twindow.alert('First bin stop value out of bound.')\n\t\t\t\t\tevent.target.value = origValue\n\t\t\t\t\treturn\n\t\t\t\t}\n\n\t\t\t\t// first_bin should have already been set; adding the check just to skip the tsc error...\n\t\t\t\tthis.q.first_bin.stop = newValue\n\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t})\n\n\t\ttr.append('td')\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.6em')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('display', handler.density.no_density_data ? 'none' : 'block')\n\t\t\t.text('Indicated by left-most red line. Drag to change.')\n\t}\n\n\trenderLastBinInputs(tr) {\n\t\tconst handler = this.editHandler.handler\n\t\tconst q = this.q\n\t\t// tell if last bin is automatic (not fixed)\n\t\tconst isAuto = !q.last_bin || !Number.isFinite(q.last_bin.start)\n\n\t\ttr.append('td')\n\t\t\t.style('padding-top', '4px')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('vertical-align', 'top')\n\t\t\t.text('Last Bin Start')\n\n\t\tconst td1 = tr.append('td').style('padding-left', '15px').style('vertical-align', 'top')\n\t\tconst radio_div = td1.append('div')\n\n\t\tconst radios = make_radios({\n\t\t\tholder: radio_div,\n\t\t\toptions: [\n\t\t\t\t{ label: 'Automatic', value: 'auto', checked: isAuto },\n\t\t\t\t{ label: 'Fixed', value: 'fixed', checked: !isAuto }\n\t\t\t],\n\t\t\tcallback: v => {\n\t\t\t\tif (v == 'auto') {\n\t\t\t\t\tdelete q.last_bin\n\t\t\t\t\t// if just deleting last_bin.start and keeps q.last_bin{}, density plot may set last_bin.bin='last' and will break bin validation\n\t\t\t\t\tedit_div.style('display', 'none')\n\t\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t// v is \"fixed\", to assign a number to self.q.last_bin.start\n\t\t\t\tedit_div.style('display', 'inline-block')\n\t\t\t\tif (this.dom.last_start_input.property('value') == '') {\n\t\t\t\t\t// blank input, fill max\n\t\t\t\t\tthis.dom.last_start_input.property('value', this.tw.q.last_bin?.start || handler.density_data.max)\n\t\t\t\t}\n\t\t\t\tthis.setLastBinStart()\n\t\t\t}\n\t\t})\n\n\t\tthis.dom.fixed_radio = radios.inputs.filter((_, i) => i === 1)\n\n\t\tconst edit_div = tr\n\t\t\t.append('td')\n\t\t\t.append('div')\n\t\t\t.style('display', isAuto ? 'none' : 'inline-block')\n\n\t\tthis.dom.last_start_input = edit_div\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.property('value', q.last_bin?.start || '')\n\t\t\t.style('width', '100px')\n\t\t\t.on('change', () => this.setLastBinStart())\n\n\t\tedit_div\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.6em')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('display', handler.density.no_density_data ? 'none' : 'block')\n\t\t\t.text('Indicated by right-most red line. Drag to change.')\n\t}\n\n\tsetLastBinStart() {\n\t\tconst q = this.q\n\t\tconst { max } = this.editHandler.handler.density_data\n\t\t// only get value from <input>\n\t\tconst strInput = this.dom.last_start_input.property('value')\n\t\tif (strInput === '') return\n\t\tconst inputValue = Number(strInput)\n\n\t\t// TODO first_bin should be required\n\t\tif (q.first_bin && inputValue <= q.first_bin.stop) {\n\t\t\twindow.alert('Last bin start cannot be smaller than first bin stop.')\n\t\t\tthis.dom.last_start_input.property('value', max)\n\t\t\treturn\n\t\t}\n\t\tif (inputValue > max) {\n\t\t\twindow.alert('Last bin start value out of bound.')\n\t\t\tthis.dom.last_start_input.property('value', max)\n\t\t\treturn\n\t\t}\n\t\tif (q.last_bin) q.last_bin.start = inputValue\n\t\telse\n\t\t\tq.last_bin = {\n\t\t\t\tstart: inputValue,\n\t\t\t\tstopunbounded: true,\n\t\t\t\tstopinclusive: false\n\t\t\t}\n\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t}\n\n\tgetBoundaryOpts(): BoundaryOpts {\n\t\tconst { min, max } = this.editHandler.handler.density_data\n\t\tconst binLinesStop = this.q.last_bin?.start ?? max + Math.abs(this.q.first_bin.stop) - Math.min(min, 0)\n\t\tconst boundaryValues: BoundaryValue[] = []\n\t\tfor (let i = this.q.first_bin.stop; i <= binLinesStop; i = i + this.q.bin_size) {\n\t\t\tif (this.q.last_bin?.start === i) break\n\t\t\tif (i > binLinesStop) boundaryValues[boundaryValues.length - 1].isLastVisibleLine = true\n\t\t\tconst isDraggable = i === this.q.first_bin.stop || i === this.q.bin_size - 1\n\t\t\t// non-draggable lines should move with the first bin boundary line\n\t\t\tboundaryValues.push({ x: i, isDraggable, movesWithLineIndex: !isDraggable ? 0 : -1 })\n\t\t}\n\t\tif (this.q.last_bin) {\n\t\t\tboundaryValues.push({\n\t\t\t\tx: this.q.last_bin.start,\n\t\t\t\tisDraggable: true,\n\t\t\t\tisLastVisibleLine: true,\n\t\t\t\tmovesWithLineIndex: -1\n\t\t\t})\n\t\t}\n\n\t\treturn {\n\t\t\tvalues: boundaryValues,\n\t\t\tcallback: (d: DraggedLineData, value) => {\n\t\t\t\t//d.scaledX = Math.round(xscale(value))\n\t\t\t\tif (d.index === 0) {\n\t\t\t\t\tthis.dom.first_stop_input.property('value', value)\n\t\t\t\t\tthis.q.first_bin.stop = value as number\n\t\t\t\t} else {\n\t\t\t\t\tthis.editHandler.handler.dom.last_start_input.property('value', value)\n\t\t\t\t\t//if (!this.q.last_bin) this.q.last_bin = {}\n\t\t\t\t\tif (this.q.last_bin) this.q.last_bin.start = value\n\t\t\t\t\t//middleLines.style('display', (c: any) => (d.draggedX && c.scaledX >= d.draggedX ? 'none' : ''))\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tgetEditedQ(destroyDom = true): RegularNumericBinConfig {\n\t\tconst bin_size = this.dom.bin_size_input.property('value')\n\t\tconst config: RegularNumericBinConfig = {\n\t\t\tmode: 'discrete',\n\t\t\ttype: 'regular-bin',\n\t\t\tstartinclusive: this.editHandler.boundaryInclusion == 'startinclusive',\n\t\t\tstopinclusive: this.editHandler.boundaryInclusion == 'stopinclusive',\n\t\t\tbin_size: Number(bin_size),\n\t\t\tfirst_bin: {\n\t\t\t\tstartunbounded: true,\n\t\t\t\tstop: Number(this.dom.first_stop_input.property('value'))\n\t\t\t},\n\t\t\trounding: bin_size.includes('.') && !bin_size.endsWith('.') ? `.${bin_size.split('.')[1].length}f` : '.0f'\n\t\t}\n\n\t\tif (this.dom.fixed_radio.property('checked')) {\n\t\t\tconfig.last_bin = {\n\t\t\t\tstart: Number(this.dom.last_start_input.property('value')),\n\t\t\t\tstopunbounded: true\n\t\t\t}\n\t\t}\n\n\t\tif (destroyDom) {\n\t\t\tfor (const name of Object.keys(this.dom)) {\n\t\t\t\tthis.dom[name].remove()\n\t\t\t\tdelete this.dom[name]\n\t\t\t}\n\t\t}\n\n\t\treturn config\n\t}\n\n\tundoEdits() {\n\t\tthis.q = this.getDefaultQ()\n\t\tthis.dom.binsTable.selectAll('*').remove()\n\t\tthis.renderBinSizeInput(this.dom.binsTable.append('tr'))\n\t\tthis.renderFirstBinInput(this.dom.binsTable.append('tr'))\n\t\tthis.renderLastBinInputs(this.dom.binsTable.append('tr'))\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t}\n}\n"],
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-  "names": []
-}

package/dist/chunk-B4VRYXOQ.js

@@ -1,288 +0,0 @@
-import {
-  getColors
-} from "./chunk-EBKERML3.js";
-import {
-  convertUnits,
-  isNumeric,
-  isStrictNumeric
-} from "./chunk-JNITUVXP.js";
-import {
-  format
-} from "./chunk-OAWQ6LOO.js";
-
-// ../shared/utils/dist/src/termdb.bins.js
-function validate_bins(binconfig) {
-  const bc = binconfig;
-  if (!bc || typeof bc !== "object") throw "bin schema must be an object";
-  if (!("type" in bc)) bc.type = "regular-bin";
-  if (bc.type == "custom-bin") {
-    if (!Array.isArray(bc.lst)) throw "binconfig.lst must be an array";
-    if (!bc.lst.length) throw "binconfig.lst must have entries";
-    const first_bin = bc.lst[0];
-    const last_bin = bc.lst[bc.lst.length - 1];
-    for (const bin of bc.lst) {
-      if (!("startinclusive" in bin) && !("stopinclusive" in bin)) {
-        throw "custom bin.startinclusive and/or bin.stopinclusive must be defined";
-      }
-      if (bin == first_bin) {
-        if ("startunbounded" in bin && !bin.startunbounded) {
-          throw `a custom first bin must not set bin.startunbounded to false`;
-        }
-        bin.startunbounded = true;
-        if ("start" in bin) {
-          throw "a custom first bin must not set a bin.start value";
-        }
-        if ("start_percentile" in bin) {
-          throw "the first bin must not set a bin.start_percentile value";
-        }
-        if (!("stop" in bin)) {
-          throw `a custom first bin must define a bin.stop value`;
-        }
-        if (!isStrictNumeric(bin.stop)) {
-          throw `a custom first bin.stop value should be numeric`;
-        }
-      } else if (bin == last_bin) {
-        if (!("start" in bin)) {
-          throw `a custom last bin must define a bin.start value`;
-        }
-        if (!isStrictNumeric(bin.start)) {
-          throw `a custom last bin.start must be numeric`;
-        }
-        if ("stopunbounded" in bin && !bin.stopunbounded) {
-          throw "a custom last bin must not set bin.stopunbounded to false";
-        }
-        bin.stopunbounded = true;
-        if ("stop" in bin) {
-          throw "a custom last bin must not set a bin.stop value";
-        }
-      } else {
-        if (bin.startunbounded || bin.stopunbounded) {
-          throw "bin.startunbounded and bin.stopunbounded must not be set for non-first/non-last bins";
-        }
-        if (!isStrictNumeric(bin.start)) throw "bin.start must be numeric for a non-first bin";
-        if (!isStrictNumeric(bin.stop)) throw "bin.stop must be numeric for a non-last bin";
-      }
-    }
-  } else if (bc.type == "regular-bin") {
-    if (!Number.isFinite(bc.bin_size)) throw "non-numeric bin_size";
-    if (bc.bin_size <= 0) throw "bin_size must be greater than 0";
-    if (!bc.startinclusive && !bc.stopinclusive) {
-      bc.startinclusive = 1;
-      bc.stopinclusive = 0;
-    }
-    if (!bc.first_bin) throw "first_bin{} missing";
-    if (typeof bc.first_bin != "object") throw "first_bin{} is not an object";
-    if (!Object.keys(bc.first_bin).length) throw "first_bin is an empty object";
-    {
-      const b = bc.first_bin;
-      b.startunbounded = true;
-      if (b.stop_percentile) {
-        if (!Number.isInteger(b.stop_percentile)) throw "first_bin.stop_percentile should be integer";
-        if (b.stop_percentile <= 0 || b.stop_percentile >= 100) throw "first_bin.stop_percentile out of bound (0-100)";
-      } else if (!Number.isFinite(b.stop)) {
-        throw "first_bin.stop not a number when stop_percentile is not set";
-      }
-    }
-    if (bc.last_bin) {
-      const b = bc.last_bin;
-      if (b.start_percentile) {
-        if (!Number.isInteger(b.start_percentile)) throw "last_bin.start_percentile should be integer";
-        if (b.start_percentile <= 0 || b.start_percentile >= 100) throw "last_bin.start_percentile out of bound (0-100)";
-      } else if (!Number.isFinite(b.start)) {
-        throw "last_bin.start not a number when start_percentile is not set";
-      }
-      b.stopunbounded = true;
-      if ("stop" in b) {
-        throw "a regular last bin must not set a bin.stop value";
-      }
-    }
-  } else {
-    throw `invalid binconfig.type="${bc.type}"`;
-  }
-}
-var maxNumBins = 100;
-function compute_bins(binconfig, summaryfxn, valueConversion) {
-  const bc = binconfig;
-  validate_bins(bc);
-  if (bc.lst) {
-    if (!Array.isArray(bc.lst)) throw `bc.lst is not an array`;
-    if (bc.lst.length > maxNumBins) throw `bc.lst exceed the maximum of ${maxNumBins} allowed entries`;
-    const k2c2 = getColors(bc.lst.length);
-    for (const bin of bc.lst) bin.color = k2c2(bin.label);
-  }
-  if (bc.type == "custom-bin") return JSON.parse(JSON.stringify(bc.lst));
-  if (typeof summaryfxn != "function") throw "summaryfxn required for modules/termdb.bins.js compute_bins()";
-  const percentiles = target_percentiles(bc);
-  const summary = summaryfxn(percentiles);
-  if (!summary || typeof summary !== "object") throw "invalid returned value by summaryfxn";
-  bc.results = { summary };
-  if (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc);
-  const minFloor = Math.floor(summary.min * 100) / 100;
-  const maxCeil = Math.ceil(summary.max * 100) / 100;
-  const min = bc.first_bin.startunbounded ? minFloor : bc.first_bin.start_percentile ? summary["p" + bc.first_bin.start_percentile] : bc.first_bin.start;
-  let max = maxCeil, last_start, last_stop;
-  if (bc.last_bin) {
-    max = bc.last_bin.stopunbounded ? maxCeil : bc.last_bin.stop_percentile ? summary["p" + bc.last_bin.stop_percentile] : isNumeric(bc.last_bin.stop) && bc.last_bin.stop <= summary.max ? bc.last_bin.stop : maxCeil;
-    last_start = isStrictNumeric(bc.last_bin.start_percentile) ? summary["p" + bc.last_bin.start_percentile] : isStrictNumeric(bc.last_bin.start) ? bc.last_bin.start : void 0;
-    last_stop = bc.last_bin.stopunbounded ? null : bc.last_bin.stop_percentile ? summary["p" + bc.last_bin.stop_percentile] : isStrictNumeric(bc.last_bin.stop) ? bc.last_bin.stop : null;
-  } else if (bc.lst) {
-    const last_bin = bc.lst[bc.lst.length - 1];
-    last_start = last_bin.start;
-    last_stop = "stop" in last_bin && !last_bin.stopunbounded ? last_bin.stop : maxCeil;
-    max = last_stop;
-  } else {
-    last_start = maxCeil;
-    last_stop = maxCeil;
-  }
-  const numericMax = isStrictNumeric(max);
-  const numericLastStart = isStrictNumeric(last_start);
-  const numericLastStop = isStrictNumeric(last_stop);
-  if (!numericMax && !numericLastStart) return [];
-  const bins = [];
-  let currBin = {
-    startunbounded: bc.first_bin.startunbounded,
-    start: bc.first_bin.startunbounded ? void 0 : min,
-    stop: isStrictNumeric(bc.first_bin.stop_percentile) ? +summary["p" + bc.first_bin.stop_percentile] : isStrictNumeric(bc.first_bin.stop) ? +bc.first_bin.stop : min + bc.bin_size,
-    startinclusive: bc.startinclusive,
-    stopinclusive: bc.stopinclusive
-  };
-  if (!isStrictNumeric(currBin.stop)) throw "the computed first_bin.stop is non-numeric" + currBin.stop;
-  while (numericMax && currBin.stop <= max || currBin.startunbounded && !bins.length || currBin.stopunbounded) {
-    bins.push(currBin);
-    if (currBin.stop >= max) {
-      currBin.stopunbounded = true;
-      if (bins.length > 1) {
-        delete currBin.stop;
-      }
-    }
-    currBin.label = get_bin_label(currBin, bc, valueConversion);
-    if (currBin.stopunbounded) break;
-    const upper = currBin.stop + bc.bin_size;
-    const previousStop = currBin.stop;
-    currBin = {
-      startinclusive: bc.startinclusive,
-      stopinclusive: bc.stopinclusive,
-      start: previousStop,
-      stop: numericLastStop && (previousStop == last_start || upper > last_stop) ? last_stop : numericLastStart && upper > last_start && previousStop != last_start ? last_start : upper
-    };
-    if (currBin.stop >= max) {
-      currBin.stop = max;
-      if (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1;
-      if (bc.last_bin && bc.last_bin.stopinclusive) currBin.stopinclusive = 1;
-    }
-    if (numericLastStart && currBin.start == last_start) {
-      if (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1;
-    }
-    if (currBin.start > currBin.stop) {
-      if (numericLastStart && currBin.stop == last_start && bc.last_bin && bc.last_bin.stopunbounded)
-        currBin.stopunbounded = true;
-      else break;
-    }
-    if (bins.length + 1 >= maxNumBins) {
-      delete currBin.stop;
-      currBin.stopunbounded = true;
-      currBin.label = get_bin_label(currBin, bc, valueConversion);
-      if (!bins.includes(currBin)) bins.push(currBin);
-      const hint = "Please increase the bin_size or first bin stop, or have a lower last bin start.";
-      bc.error = hint + " (max_num_bins_reached)";
-      break;
-    }
-  }
-  delete bc.binLabelFormatter;
-  if (bins.length > 1) {
-    delete bins[bins.length - 1].stop;
-  }
-  const k2c = getColors(bins.length);
-  for (const bin of bins) bin.color = k2c(bin.label);
-  return bins;
-}
-function getNumDecimalsFormatter(bc) {
-  return "rounding" in bc ? format(bc.rounding) : (d) => d;
-}
-function get_bin_label(bin, binconfig, valueConversion) {
-  if (!bin) return "missing bin.label";
-  if (bin.label) return bin.label;
-  const bc = binconfig;
-  if (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc);
-  if (!bin.startunbounded && !bin.stopunbounded && !("startinclusive" in bin) && !("stopinclusive" in bin)) {
-    if (bc.startinclusive) bin.startinclusive = true;
-    else if (bc.stopinclusive) bin.stopinclusive = true;
-  }
-  const start = bc.use_as == "bins" || bin.start;
-  const stop = bc.use_as == "bins" || bin.stop;
-  let label_offset = 0;
-  if ("label_offset" in bc) {
-    bc.label_offset_ignored = "bin_size" in bc && bc.bin_size < bc.label_offset;
-    if (!bc.label_offset_ignored) label_offset = bc.label_offset;
-  } else if (bc.bin_size === 1 && bc.termtype == "integer") {
-    label_offset = 1;
-  }
-  if (bin.startunbounded) {
-    const oper = bin.stopinclusive ? "\u2264" : "<";
-    const v1 = valueConversion ? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(stop);
-    return oper + v1;
-  }
-  if (bin.stopunbounded || start === stop) {
-    const oper = bin.startinclusive ? "\u2265" : ">";
-    const v0 = valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(start);
-    return oper + v0;
-  }
-  if (label_offset && bin.startinclusive && !bin.stopinclusive) {
-    if (Number.isInteger(bc.bin_size) && Math.abs(start - stop) === label_offset) {
-      return "" + (valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(start));
-    } else {
-      const v0 = valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(start);
-      const v1 = valueConversion ? convertUnits(
-        stop - label_offset,
-        valueConversion.fromUnit,
-        valueConversion.toUnit,
-        valueConversion.scaleFactor,
-        true
-      ) : bc.binLabelFormatter(stop - label_offset);
-      return +v0 >= +v1 ? v0.toString() : v0 + " to " + v1;
-    }
-  } else {
-    const oper0 = bin.startinclusive ? "" : ">";
-    const oper1 = bin.stopinclusive ? "" : "<";
-    const v0 = valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : Number.isInteger(start) ? start : bc.binLabelFormatter(start);
-    const v1 = valueConversion ? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : Number.isInteger(stop) ? stop : bc.binLabelFormatter(stop);
-    if (+v0 >= +v1) {
-      const oper = bin.startinclusive ? "\u2265" : ">";
-      return oper + v0;
-    } else {
-      return oper0 + v0 + " to " + oper1 + v1;
-    }
-  }
-}
-function get_bin_range_equation(bin, binconfig) {
-  const x = '<span style="font-family:Times;font-style:italic;">x</span>';
-  let range_eq;
-  const copy = structuredClone(bin);
-  copy.label = "";
-  const bin_label = get_bin_label(copy, binconfig, void 0);
-  if (bin.startunbounded || bin.stopunbounded) {
-    range_eq = x + " " + bin_label;
-  } else if (bin.startinclusive) {
-    range_eq = bin_label.replace("to <", "\u2264 " + x + " <");
-  } else if (bin.stopinclusive) {
-    range_eq = bin_label.replace(">", "").replace("to", "< " + x + " \u2264");
-  }
-  return range_eq;
-}
-function target_percentiles(binconfig) {
-  const percentiles = [];
-  const f = binconfig.first_bin;
-  if (f && isStrictNumeric(f.start_percentile)) percentiles.push(f.start_percentile);
-  if (f && isStrictNumeric(f.stop_percentile)) percentiles.push(f.stop_percentile);
-  const l = binconfig.last_bin;
-  if (l && isStrictNumeric(l.start_percentile)) percentiles.push(l.start_percentile);
-  if (l && isStrictNumeric(l.stop_percentile)) percentiles.push(l.stop_percentile);
-  return percentiles;
-}
-
-export {
-  compute_bins,
-  get_bin_label,
-  get_bin_range_equation
-};
-//# sourceMappingURL=chunk-B4VRYXOQ.js.map

package/dist/chunk-B4VRYXOQ.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../../shared/utils/src/termdb.bins.ts"],
-  "sourcesContent": ["import { format } from 'd3-format'\nimport { getColors } from './common.js'\nimport { isNumeric, isStrictNumeric, convertUnits } from './helpers.js'\n\nexport default function validate_bins(binconfig) {\n\t// Number.isFinite('1') returns false, which is desired\n\n\tconst bc = binconfig\n\tif (!bc || typeof bc !== 'object') throw 'bin schema must be an object'\n\t// assign default type\n\tif (!('type' in bc)) bc.type = 'regular-bin'\n\n\tif (bc.type == 'custom-bin') {\n\t\tif (!Array.isArray(bc.lst)) throw 'binconfig.lst must be an array'\n\t\tif (!bc.lst.length) throw 'binconfig.lst must have entries'\n\t\tconst first_bin = bc.lst[0]\n\t\tconst last_bin = bc.lst[bc.lst.length - 1]\n\n\t\tfor (const bin of bc.lst) {\n\t\t\tif (!('startinclusive' in bin) && !('stopinclusive' in bin)) {\n\t\t\t\tthrow 'custom bin.startinclusive and/or bin.stopinclusive must be defined'\n\t\t\t}\n\n\t\t\tif (bin == first_bin) {\n\t\t\t\tif ('startunbounded' in bin && !bin.startunbounded) {\n\t\t\t\t\tthrow `a custom first bin must not set bin.startunbounded to false`\n\t\t\t\t}\n\t\t\t\tbin.startunbounded = true\n\t\t\t\tif ('start' in bin) {\n\t\t\t\t\tthrow 'a custom first bin must not set a bin.start value'\n\t\t\t\t}\n\t\t\t\tif ('start_percentile' in bin) {\n\t\t\t\t\tthrow 'the first bin must not set a bin.start_percentile value'\n\t\t\t\t}\n\t\t\t\tif (!('stop' in bin)) {\n\t\t\t\t\tthrow `a custom first bin must define a bin.stop value`\n\t\t\t\t}\n\t\t\t\tif (!isStrictNumeric(bin.stop)) {\n\t\t\t\t\tthrow `a custom first bin.stop value should be numeric`\n\t\t\t\t}\n\t\t\t} else if (bin == last_bin) {\n\t\t\t\tif (!('start' in bin)) {\n\t\t\t\t\tthrow `a custom last bin must define a bin.start value`\n\t\t\t\t}\n\t\t\t\tif (!isStrictNumeric(bin.start)) {\n\t\t\t\t\tthrow `a custom last bin.start must be numeric`\n\t\t\t\t}\n\t\t\t\tif ('stopunbounded' in bin && !bin.stopunbounded) {\n\t\t\t\t\tthrow 'a custom last bin must not set bin.stopunbounded to false'\n\t\t\t\t}\n\t\t\t\tbin.stopunbounded = true\n\t\t\t\tif ('stop' in bin) {\n\t\t\t\t\tthrow 'a custom last bin must not set a bin.stop value'\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\tif (bin.startunbounded || bin.stopunbounded) {\n\t\t\t\t\tthrow 'bin.startunbounded and bin.stopunbounded must not be set for non-first/non-last bins'\n\t\t\t\t}\n\t\t\t\tif (!isStrictNumeric(bin.start)) throw 'bin.start must be numeric for a non-first bin'\n\t\t\t\tif (!isStrictNumeric(bin.stop)) throw 'bin.stop must be numeric for a non-last bin'\n\t\t\t}\n\t\t}\n\t} else if (bc.type == 'regular-bin') {\n\t\t// required custom_bin parameter\n\t\tif (!Number.isFinite(bc.bin_size)) throw 'non-numeric bin_size'\n\t\tif (bc.bin_size <= 0) throw 'bin_size must be greater than 0'\n\n\t\tif (!bc.startinclusive && !bc.stopinclusive) {\n\t\t\tbc.startinclusive = 1\n\t\t\tbc.stopinclusive = 0\n\t\t}\n\n\t\tif (!bc.first_bin) throw 'first_bin{} missing'\n\t\tif (typeof bc.first_bin != 'object') throw 'first_bin{} is not an object'\n\t\tif (!Object.keys(bc.first_bin).length) throw 'first_bin is an empty object'\n\n\t\t{\n\t\t\tconst b = bc.first_bin\n\t\t\tb.startunbounded = true\n\t\t\t// requires stop_percentile, or stop\n\t\t\tif (b.stop_percentile) {\n\t\t\t\tif (!Number.isInteger(b.stop_percentile)) throw 'first_bin.stop_percentile should be integer'\n\t\t\t\tif (b.stop_percentile <= 0 || b.stop_percentile >= 100) throw 'first_bin.stop_percentile out of bound (0-100)'\n\t\t\t} else if (!Number.isFinite(b.stop)) {\n\t\t\t\tthrow 'first_bin.stop not a number when stop_percentile is not set'\n\t\t\t}\n\t\t}\n\n\t\tif (bc.last_bin) {\n\t\t\tconst b = bc.last_bin\n\t\t\t// requires start_percentile or start\n\t\t\tif (b.start_percentile) {\n\t\t\t\tif (!Number.isInteger(b.start_percentile)) throw 'last_bin.start_percentile should be integer'\n\t\t\t\tif (b.start_percentile <= 0 || b.start_percentile >= 100) throw 'last_bin.start_percentile out of bound (0-100)'\n\t\t\t} else if (!Number.isFinite(b.start)) {\n\t\t\t\tthrow 'last_bin.start not a number when start_percentile is not set'\n\t\t\t}\n\n\t\t\tb.stopunbounded = true\n\t\t\tif ('stop' in b) {\n\t\t\t\tthrow 'a regular last bin must not set a bin.stop value'\n\t\t\t}\n\t\t}\n\t} else {\n\t\tthrow `invalid binconfig.type=\"${bc.type}\"`\n\t}\n}\n\nconst maxNumBins = 100 // hardcoded limit for now to not stress sqlite\n\nexport function compute_bins(binconfig, summaryfxn, valueConversion) {\n\t/*\n\t  Bins generator\n\t  \n\tbinconfig   \n\t  configuration of bins per the Numerical Binning Scheme\n\n\tsummaryfxn (percentiles)=> return {min, max, pX, pY, ...}\n\t  - required function\n\n\t  - must accept an array of desired percentile values\n\t  and returns an object of computed properties\n\t  {\n\t    min: minimum value\n\t    max: maximum value\n\t    pX: percentile at X value, so p10 will be 10th percentile value\n\t    pY: .. corresponding to the desired percentile values \n\t  }\n\t*/\n\tconst bc = binconfig\n\n\tvalidate_bins(bc)\n\tif (bc.lst) {\n\t\tif (!Array.isArray(bc.lst)) throw `bc.lst is not an array`\n\t\tif (bc.lst.length > maxNumBins) throw `bc.lst exceed the maximum of ${maxNumBins} allowed entries`\n\t\tconst k2c = getColors(bc.lst.length) //to color bins\n\t\tfor (const bin of bc.lst) bin.color = k2c(bin.label)\n\t}\n\tif (bc.type == 'custom-bin') return JSON.parse(JSON.stringify(bc.lst))\n\tif (typeof summaryfxn != 'function') throw 'summaryfxn required for modules/termdb.bins.js compute_bins()'\n\tconst percentiles = target_percentiles(bc)\n\tconst summary = summaryfxn(percentiles)\n\tif (!summary || typeof summary !== 'object') throw 'invalid returned value by summaryfxn'\n\tbc.results = { summary }\n\tif (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc)\n\n\t// round the min and max values for use as bin start and stop\n\t// in the first and last bins, respectively\n\tconst minFloor = Math.floor(summary.min * 100) / 100\n\tconst maxCeil = Math.ceil(summary.max * 100) / 100\n\tconst min = bc.first_bin.startunbounded\n\t\t? minFloor\n\t\t: bc.first_bin.start_percentile\n\t\t? summary['p' + bc.first_bin.start_percentile]\n\t\t: bc.first_bin.start\n\tlet max = maxCeil, // in order to include the max value in the last bin\n\t\tlast_start,\n\t\tlast_stop\n\n\tif (bc.last_bin) {\n\t\tmax = bc.last_bin.stopunbounded\n\t\t\t? maxCeil // in order to include the max value in the last bin\n\t\t\t: bc.last_bin.stop_percentile\n\t\t\t? summary['p' + bc.last_bin.stop_percentile]\n\t\t\t: isNumeric(bc.last_bin.stop) && bc.last_bin.stop <= summary.max // '0.0088' < 0.0088\n\t\t\t? bc.last_bin.stop\n\t\t\t: maxCeil // in order to include the max value in the last bin\n\t\tlast_start = isStrictNumeric(bc.last_bin.start_percentile)\n\t\t\t? summary['p' + bc.last_bin.start_percentile]\n\t\t\t: isStrictNumeric(bc.last_bin.start)\n\t\t\t? bc.last_bin.start\n\t\t\t: undefined\n\t\tlast_stop = bc.last_bin.stopunbounded\n\t\t\t? null\n\t\t\t: bc.last_bin.stop_percentile\n\t\t\t? summary['p' + bc.last_bin.stop_percentile]\n\t\t\t: isStrictNumeric(bc.last_bin.stop)\n\t\t\t? bc.last_bin.stop\n\t\t\t: null\n\t} else if (bc.lst) {\n\t\tconst last_bin = bc.lst[bc.lst.length - 1]\n\t\tlast_start = last_bin.start\n\t\tlast_stop = 'stop' in last_bin && !last_bin.stopunbounded ? last_bin.stop : maxCeil\n\t\tmax = last_stop\n\t} else {\n\t\tlast_start = maxCeil\n\t\tlast_stop = maxCeil\n\t}\n\n\tconst numericMax = isStrictNumeric(max)\n\tconst numericLastStart = isStrictNumeric(last_start)\n\tconst numericLastStop = isStrictNumeric(last_stop)\n\n\tif (!numericMax && !numericLastStart) return [] //throw 'unable to compute the last bin start or stop'\n\n\tconst bins: any[] = []\n\tlet currBin: Record<string, any> = {\n\t\tstartunbounded: bc.first_bin.startunbounded,\n\t\tstart: bc.first_bin.startunbounded ? undefined : min,\n\t\tstop: isStrictNumeric(bc.first_bin.stop_percentile)\n\t\t\t? +summary['p' + bc.first_bin.stop_percentile]\n\t\t\t: isStrictNumeric(bc.first_bin.stop)\n\t\t\t? +bc.first_bin.stop\n\t\t\t: min + bc.bin_size,\n\t\tstartinclusive: bc.startinclusive,\n\t\tstopinclusive: bc.stopinclusive\n\t}\n\n\tif (!isStrictNumeric(currBin.stop)) throw 'the computed first_bin.stop is non-numeric' + currBin.stop\n\n\twhile ((numericMax && currBin.stop <= max) || (currBin.startunbounded && !bins.length) || currBin.stopunbounded) {\n\t\tbins.push(currBin)\n\t\t// force a computed last bin to have stopunbounded true\n\t\tif (currBin.stop >= max) {\n\t\t\tcurrBin.stopunbounded = true\n\t\t\tif (bins.length > 1) {\n\t\t\t\tdelete currBin.stop\n\t\t\t}\n\t\t}\n\t\tcurrBin.label = get_bin_label(currBin, bc, valueConversion)\n\t\tif (currBin.stopunbounded) break\n\n\t\tconst upper = currBin.stop + bc.bin_size\n\t\tconst previousStop = currBin.stop\n\t\tcurrBin = {\n\t\t\tstartinclusive: bc.startinclusive,\n\t\t\tstopinclusive: bc.stopinclusive,\n\t\t\tstart: previousStop,\n\t\t\tstop:\n\t\t\t\tnumericLastStop && (previousStop == last_start || upper > last_stop)\n\t\t\t\t\t? last_stop\n\t\t\t\t\t: numericLastStart && upper > last_start && previousStop != last_start\n\t\t\t\t\t? last_start\n\t\t\t\t\t: upper\n\t\t}\n\n\t\tif (currBin.stop >= max) {\n\t\t\tcurrBin.stop = max\n\t\t\tif (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1\n\t\t\tif (bc.last_bin && bc.last_bin.stopinclusive) currBin.stopinclusive = 1\n\t\t}\n\t\tif (numericLastStart && currBin.start == last_start) {\n\t\t\tif (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1\n\t\t}\n\t\tif (currBin.start > currBin.stop) {\n\t\t\tif (numericLastStart && currBin.stop == last_start && bc.last_bin && bc.last_bin.stopunbounded)\n\t\t\t\tcurrBin.stopunbounded = true\n\t\t\telse break\n\t\t}\n\t\tif (bins.length + 1 >= maxNumBins) {\n\t\t\tdelete currBin.stop\n\t\t\tcurrBin.stopunbounded = true\n\t\t\tcurrBin.label = get_bin_label(currBin, bc, valueConversion)\n\t\t\tif (!bins.includes(currBin)) bins.push(currBin)\n\t\t\tconst hint = 'Please increase the bin_size or first bin stop, or have a lower last bin start.'\n\t\t\tbc.error = hint + ' (max_num_bins_reached)'\n\t\t\tbreak\n\t\t}\n\t}\n\tdelete bc.binLabelFormatter\n\tif (bins.length > 1) {\n\t\tdelete bins[bins.length - 1].stop\n\t}\n\tconst k2c = getColors(bins.length) //to color bins\n\tfor (const bin of bins) bin.color = k2c(bin.label)\n\treturn bins\n}\n\nfunction getNumDecimalsFormatter(bc) {\n\t//return format('rounding' in bc ? bc.rounding : '')\n\treturn 'rounding' in bc ? format(bc.rounding) : d => d // default to labeling using the start/stop value as-is\n}\n\nexport function get_bin_label(bin, binconfig, valueConversion?: any) {\n\t/*\n\t  Generate a numeric bin label given a bin configuration and an optional term valueConversion object\n\t*/\n\tif (!bin) return 'missing bin.label'\n\tif (bin.label) return bin.label\n\n\tconst bc = binconfig\n\tif (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc)\n\tif (!bin.startunbounded && !bin.stopunbounded && !('startinclusive' in bin) && !('stopinclusive' in bin)) {\n\t\tif (bc.startinclusive) bin.startinclusive = true\n\t\telse if (bc.stopinclusive) bin.stopinclusive = true\n\t}\n\n\tconst start = bc.use_as == 'bins' || bin.start\n\tconst stop = bc.use_as == 'bins' || bin.stop\n\n\tlet label_offset = 0\n\tif ('label_offset' in bc) {\n\t\tbc.label_offset_ignored = 'bin_size' in bc && bc.bin_size < bc.label_offset\n\t\tif (!bc.label_offset_ignored) label_offset = bc.label_offset\n\t} else if (bc.bin_size === 1 && bc.termtype == 'integer') {\n\t\tlabel_offset = 1\n\t}\n\n\t// one side-unbounded bins\n\t// label will be \">v\" or \"<v\"\n\tif (bin.startunbounded) {\n\t\tconst oper = bin.stopinclusive ? '\u2264' : '<' // \\u2264\n\t\tconst v1 = valueConversion\n\t\t\t? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: bc.binLabelFormatter(stop) //bin.startinclusive && label_offset ? stop - label_offset : stop)\n\t\treturn oper + v1\n\t}\n\t// a data value may coincide with the last bin's start\n\tif (bin.stopunbounded || start === stop) {\n\t\tconst oper = bin.startinclusive /*|| label_offset*/ ? '\u2265' : '>' // \\u2265\n\t\tconst v0 = valueConversion\n\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: bc.binLabelFormatter(start) //bin.startinclusive || start == min ? start : start + label_offset)\n\t\treturn oper + v0\n\t}\n\n\t// two-sided bins\n\tif (label_offset && bin.startinclusive && !bin.stopinclusive) {\n\t\tif (Number.isInteger(bc.bin_size) && Math.abs(start - stop) === label_offset) {\n\t\t\t// make a simpler label when the range simply spans the bin_size\n\t\t\treturn (\n\t\t\t\t'' +\n\t\t\t\t(valueConversion\n\t\t\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t\t\t: bc.binLabelFormatter(start))\n\t\t\t)\n\t\t} else {\n\t\t\tconst v0 = valueConversion\n\t\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t\t: bc.binLabelFormatter(start)\n\t\t\tconst v1 = valueConversion\n\t\t\t\t? convertUnits(\n\t\t\t\t\t\tstop - label_offset,\n\t\t\t\t\t\tvalueConversion.fromUnit,\n\t\t\t\t\t\tvalueConversion.toUnit,\n\t\t\t\t\t\tvalueConversion.scaleFactor,\n\t\t\t\t\t\ttrue\n\t\t\t\t  )\n\t\t\t\t: bc.binLabelFormatter(stop - label_offset)\n\t\t\t// ensure that last two bin labels make sense (the last is stopunbounded)\n\t\t\treturn +v0 >= +v1 ? v0.toString() : v0 + ' to ' + v1\n\t\t}\n\t} else {\n\t\t// stop_inclusive || label_offset == 0\n\t\tconst oper0 = bin.startinclusive ? '' : '>'\n\t\tconst oper1 = bin.stopinclusive ? '' : '<'\n\t\tconst v0 = valueConversion\n\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: Number.isInteger(start)\n\t\t\t? start\n\t\t\t: bc.binLabelFormatter(start)\n\t\tconst v1 = valueConversion\n\t\t\t? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: Number.isInteger(stop)\n\t\t\t? stop\n\t\t\t: bc.binLabelFormatter(stop)\n\t\t// after rounding the bin labels, the bin start may equal the last bin stop as derived from actual data\n\t\tif (+v0 >= +v1) {\n\t\t\tconst oper = bin.startinclusive ? '\u2265' : '>' // \\u2265\n\t\t\treturn oper + v0\n\t\t} else {\n\t\t\treturn oper0 + v0 + ' to ' + oper1 + v1\n\t\t}\n\t}\n}\n\n// get bin range equation from bin label and bin properties\nexport function get_bin_range_equation(bin, binconfig) {\n\tconst x = '<span style=\"font-family:Times;font-style:italic;\">x</span>'\n\tlet range_eq\n\t// should always use computed (not user-customized) bin label to determine bin range text\n\tconst copy = structuredClone(bin)\n\tcopy.label = '' // mutate only the copy, and not the original bin argument\n\tconst bin_label = get_bin_label(copy, binconfig, undefined)\n\tif (bin.startunbounded || bin.stopunbounded) {\n\t\t// first or last bins, e.g. x \u2264 14 and x > 16\n\t\trange_eq = x + ' ' + bin_label\n\t} else if (bin.startinclusive) {\n\t\t// bins with startinclusive, e.g. 14 \u2264 x < 16\n\t\trange_eq = bin_label.replace('to <', '\u2264 ' + x + ' <')\n\t} else if (bin.stopinclusive) {\n\t\t// bins with stopinclusive, e.g. 14 < x \u2264 16\n\t\trange_eq = bin_label.replace('>', '').replace('to', '< ' + x + ' \u2264')\n\t}\n\treturn range_eq\n}\n\nexport function target_percentiles(binconfig) {\n\tconst percentiles: any[] = []\n\tconst f = binconfig.first_bin\n\tif (f && isStrictNumeric(f.start_percentile)) percentiles.push(f.start_percentile)\n\tif (f && isStrictNumeric(f.stop_percentile)) percentiles.push(f.stop_percentile)\n\tconst l = binconfig.last_bin\n\tif (l && isStrictNumeric(l.start_percentile)) percentiles.push(l.start_percentile)\n\tif (l && isStrictNumeric(l.stop_percentile)) percentiles.push(l.stop_percentile)\n\treturn percentiles\n}\n"],
-  "mappings": 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-  "names": ["k2c"]
-}

package/dist/chunk-BLKF2SE6.js

@@ -1,37 +0,0 @@
-import {
-  addGeneSearchbox,
-  getGEunit
-} from "./chunk-UK3PTE3P.js";
-import {
-  Menu
-} from "./chunk-HYOEWQ5P.js";
-import {
-  TermTypes
-} from "./chunk-XOCO3LVN.js";
-
-// termdb/handlers/geneExpression.ts
-var SearchHandler = class {
-  init(opts) {
-    this.callback = opts.callback;
-    this.app = opts.app;
-    const holder = opts.holder.append("div").style("padding", "10px 0px");
-    const geneSearch = addGeneSearchbox({
-      tip: new Menu({ padding: "0px" }),
-      genome: opts.genomeObj,
-      row: holder,
-      searchOnly: "gene",
-      callback: () => this.selectGene(geneSearch.geneSymbol)
-    });
-  }
-  async selectGene(gene) {
-    const unit = getGEunit(this.app.vocabApi);
-    const name = `${gene} ${unit}`;
-    if (!gene) throw new Error("No gene selected");
-    this.callback({ gene, name, type: TermTypes.GENE_EXPRESSION });
-  }
-};
-
-export {
-  SearchHandler
-};
-//# sourceMappingURL=chunk-BLKF2SE6.js.map