@sjcrh/proteinpaint-client 2.181.0 → 2.182.1

package/dist/chunk-KWFEGPZL.js

@@ -0,0 +1,97 @@
+import {
+  addGeneSearchbox,
+  first_genetrack_tolist,
+  getDNAMethUnit,
+  sayerror
+} from "./chunk-NVB7MQLH.js";
+import {
+  Menu
+} from "./chunk-A6TQGNDQ.js";
+import {
+  DNA_METHYLATION
+} from "./chunk-6ITDJ5UR.js";
+
+// termdb/handlers/dnaMethylation.ts
+var SearchHandler = class {
+  init(opts) {
+    this.opts = opts;
+    this.callback = opts.callback;
+    this.app = opts.app;
+    const holder = opts.holder.append("div").style("margin", "10px 0px");
+    this.dom = {};
+    this.dom.errDiv = holder.append("div").style("margin", "5px 0px").style("display", "none");
+    this.dom.geneSearchDiv = holder.append("div");
+    this.dom.blockDiv = holder.append("div").style("display", "none").style("margin", "15px 4px");
+    const geneSearch = addGeneSearchbox({
+      tip: new Menu({ padding: "0px" }),
+      genome: opts.genomeObj,
+      row: this.dom.geneSearchDiv,
+      callback: async () => {
+        try {
+          this.dom.errDiv.style("display", "none");
+          await this.handleGeneSearch(geneSearch);
+        } catch (e) {
+          this.dom.errDiv.style("display", "block");
+          sayerror(this.dom.errDiv, "Error: " + (e.message || e));
+          if (e.stack) console.log(e.stack);
+        }
+      }
+    });
+  }
+  async handleGeneSearch(geneSearch) {
+    if (geneSearch.geneSymbol) {
+      const { chr, start, stop } = geneSearch;
+      if (!chr || !Number.isInteger(start) || !Number.isInteger(stop))
+        throw new Error("unable to retrieve gene coordinate");
+      this.dom.blockDiv.selectAll("*").remove();
+      this.dom.blockDiv.style("display", "block");
+      this.dom.blockDiv.append("div").style("opacity", 0.6).text("Navigate genome browser to desired region");
+      const arg = {
+        holder: this.dom.blockDiv,
+        genome: this.opts.genomeObj,
+        // genome obj
+        chr,
+        start,
+        stop,
+        tklst: [],
+        nobox: true,
+        width: 500,
+        hidegenelegend: true,
+        debugmode: this.opts.debug
+      };
+      first_genetrack_tolist(this.opts.genomeObj, arg.tklst);
+      const _ = await import("./block-OO2NLGUP.js");
+      this.blockInstance = new _.Block(arg);
+      this.dom.submitBtn = this.dom.blockDiv.append("div").attr("data-testid", "sjpp-dnaMethylation-submitDiv").style("margin", "10px 0px").append("button").style("border", "none").style("border-radius", "20px").style("padding", "10px 15px").text("Submit Region").on("click", async () => {
+        const { chr: chr2, start: start2, stop: stop2 } = this.blockInstance.rglst[0];
+        const term = this.makeTerm({ chr: chr2, start: start2, stop: stop2 });
+        await this.callback(term);
+      });
+    } else if (geneSearch.chr && Number.isInteger(geneSearch.start) && Number.isInteger(geneSearch.stop)) {
+      const { chr, start, stop } = geneSearch;
+      const term = this.makeTerm({ chr, start, stop });
+      await this.callback(term);
+    } else {
+      throw new Error("invalid gene search input");
+    }
+  }
+  makeTerm(opts) {
+    const { chr, start, stop } = opts;
+    if (!chr || !Number.isInteger(start) || !Number.isInteger(stop)) throw new Error("invalid coordinate");
+    const unit = getDNAMethUnit("region", this.app.vocabApi);
+    const term = {
+      chr,
+      start,
+      stop,
+      type: DNA_METHYLATION,
+      unit,
+      genomicFeatureType: "region"
+    };
+    return term;
+  }
+};
+
+export {
+  SearchHandler
+};
+//# sourceMappingURL=chunk-KWFEGPZL.js.map

package/dist/chunk-KWFEGPZL.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../termdb/handlers/dnaMethylation.ts"],
+  "sourcesContent": ["import { Menu, addGeneSearchbox, sayerror } from '#dom'\nimport { DNA_METHYLATION } from '#shared/terms.js'\nimport { getDNAMethUnit } from '#tw/dnaMethylation'\nimport { first_genetrack_tolist } from '#common/1stGenetk'\n\n// TODO: currently, when inputting a single position (e.g. chr17:7661778 or chr17:7661778-7661778), the output is a region 400bp long. Need to support single position input.\n// TODO: verify whether coordiante is 0-based or 1-based (need to do the same for other search handlers e.g. geneVariant.ts, snp.ts, etc.)\n\nexport class SearchHandler {\n\topts: any\n\tcallback: any\n\tapp: any\n\tdom: any\n\tblockInstance: any\n\tinit(opts) {\n\t\tthis.opts = opts\n\t\tthis.callback = opts.callback\n\t\tthis.app = opts.app\n\t\tconst holder = opts.holder.append('div').style('margin', '10px 0px')\n\t\tthis.dom = {}\n\t\tthis.dom.errDiv = holder.append('div').style('margin', '5px 0px').style('display', 'none')\n\t\tthis.dom.geneSearchDiv = holder.append('div')\n\t\tthis.dom.blockDiv = holder.append('div').style('display', 'none').style('margin', '15px 4px')\n\t\tconst geneSearch = addGeneSearchbox({\n\t\t\ttip: new Menu({ padding: '0px' }),\n\t\t\tgenome: opts.genomeObj,\n\t\t\trow: this.dom.geneSearchDiv,\n\t\t\tcallback: async () => {\n\t\t\t\ttry {\n\t\t\t\t\tthis.dom.errDiv.style('display', 'none')\n\t\t\t\t\tawait this.handleGeneSearch(geneSearch)\n\t\t\t\t} catch (e: any) {\n\t\t\t\t\tthis.dom.errDiv.style('display', 'block')\n\t\t\t\t\tsayerror(this.dom.errDiv, 'Error: ' + (e.message || e))\n\t\t\t\t\tif (e.stack) console.log(e.stack)\n\t\t\t\t}\n\t\t\t}\n\t\t})\n\t}\n\n\tasync handleGeneSearch(geneSearch) {\n\t\tif (geneSearch.geneSymbol) {\n\t\t\t// gene input\n\t\t\t// embed block of gene locus to allow navigation to region of interest\n\t\t\tconst { chr, start, stop } = geneSearch\n\t\t\tif (!chr || !Number.isInteger(start) || !Number.isInteger(stop))\n\t\t\t\tthrow new Error('unable to retrieve gene coordinate')\n\n\t\t\tthis.dom.blockDiv.selectAll('*').remove()\n\t\t\tthis.dom.blockDiv.style('display', 'block')\n\t\t\tthis.dom.blockDiv.append('div').style('opacity', 0.6).text('Navigate genome browser to desired region')\n\n\t\t\tconst arg: any = {\n\t\t\t\tholder: this.dom.blockDiv,\n\t\t\t\tgenome: this.opts.genomeObj, // genome obj\n\t\t\t\tchr,\n\t\t\t\tstart,\n\t\t\t\tstop,\n\t\t\t\ttklst: [],\n\t\t\t\tnobox: true,\n\t\t\t\twidth: 500,\n\t\t\t\thidegenelegend: true,\n\t\t\t\tdebugmode: this.opts.debug\n\t\t\t}\n\t\t\tfirst_genetrack_tolist(this.opts.genomeObj, arg.tklst)\n\t\t\tconst _ = await import('#src/block')\n\t\t\tthis.blockInstance = new _.Block(arg)\n\n\t\t\tthis.dom.submitBtn = this.dom.blockDiv\n\t\t\t\t.append('div')\n\t\t\t\t.attr('data-testid', 'sjpp-dnaMethylation-submitDiv')\n\t\t\t\t.style('margin', '10px 0px')\n\t\t\t\t.append('button')\n\t\t\t\t.style('border', 'none')\n\t\t\t\t.style('border-radius', '20px')\n\t\t\t\t.style('padding', '10px 15px')\n\t\t\t\t.text('Submit Region')\n\t\t\t\t.on('click', async () => {\n\t\t\t\t\tconst { chr, start, stop } = this.blockInstance.rglst[0]\n\t\t\t\t\tconst term = this.makeTerm({ chr, start, stop })\n\t\t\t\t\tawait this.callback(term)\n\t\t\t\t})\n\t\t} else if (geneSearch.chr && Number.isInteger(geneSearch.start) && Number.isInteger(geneSearch.stop)) {\n\t\t\t// coordinate input\n\t\t\t// directly use coordinate to make term\n\t\t\tconst { chr, start, stop } = geneSearch\n\t\t\tconst term = this.makeTerm({ chr, start, stop })\n\t\t\tawait this.callback(term)\n\t\t} else {\n\t\t\tthrow new Error('invalid gene search input')\n\t\t}\n\t}\n\n\tmakeTerm(opts) {\n\t\tconst { chr, start, stop } = opts\n\t\tif (!chr || !Number.isInteger(start) || !Number.isInteger(stop)) throw new Error('invalid coordinate')\n\t\tconst unit = getDNAMethUnit('region', this.app.vocabApi)\n\n\t\tconst term = {\n\t\t\tchr,\n\t\t\tstart,\n\t\t\tstop,\n\t\t\ttype: DNA_METHYLATION,\n\t\t\tunit,\n\t\t\tgenomicFeatureType: 'region'\n\t\t}\n\t\treturn term\n\t}\n}\n"],
+  "mappings": ";;;;;;;;;;;;;;AAQO,IAAM,gBAAN,MAAoB;AAAA,EAM1B,KAAK,MAAM;AACV,SAAK,OAAO;AACZ,SAAK,WAAW,KAAK;AACrB,SAAK,MAAM,KAAK;AAChB,UAAM,SAAS,KAAK,OAAO,OAAO,KAAK,EAAE,MAAM,UAAU,UAAU;AACnE,SAAK,MAAM,CAAC;AACZ,SAAK,IAAI,SAAS,OAAO,OAAO,KAAK,EAAE,MAAM,UAAU,SAAS,EAAE,MAAM,WAAW,MAAM;AACzF,SAAK,IAAI,gBAAgB,OAAO,OAAO,KAAK;AAC5C,SAAK,IAAI,WAAW,OAAO,OAAO,KAAK,EAAE,MAAM,WAAW,MAAM,EAAE,MAAM,UAAU,UAAU;AAC5F,UAAM,aAAa,iBAAiB;AAAA,MACnC,KAAK,IAAI,KAAK,EAAE,SAAS,MAAM,CAAC;AAAA,MAChC,QAAQ,KAAK;AAAA,MACb,KAAK,KAAK,IAAI;AAAA,MACd,UAAU,YAAY;AACrB,YAAI;AACH,eAAK,IAAI,OAAO,MAAM,WAAW,MAAM;AACvC,gBAAM,KAAK,iBAAiB,UAAU;AAAA,QACvC,SAAS,GAAQ;AAChB,eAAK,IAAI,OAAO,MAAM,WAAW,OAAO;AACxC,mBAAS,KAAK,IAAI,QAAQ,aAAa,EAAE,WAAW,EAAE;AACtD,cAAI,EAAE,MAAO,SAAQ,IAAI,EAAE,KAAK;AAAA,QACjC;AAAA,MACD;AAAA,IACD,CAAC;AAAA,EACF;AAAA,EAEA,MAAM,iBAAiB,YAAY;AAClC,QAAI,WAAW,YAAY;AAG1B,YAAM,EAAE,KAAK,OAAO,KAAK,IAAI;AAC7B,UAAI,CAAC,OAAO,CAAC,OAAO,UAAU,KAAK,KAAK,CAAC,OAAO,UAAU,IAAI;AAC7D,cAAM,IAAI,MAAM,oCAAoC;AAErD,WAAK,IAAI,SAAS,UAAU,GAAG,EAAE,OAAO;AACxC,WAAK,IAAI,SAAS,MAAM,WAAW,OAAO;AAC1C,WAAK,IAAI,SAAS,OAAO,KAAK,EAAE,MAAM,WAAW,GAAG,EAAE,KAAK,2CAA2C;AAEtG,YAAM,MAAW;AAAA,QAChB,QAAQ,KAAK,IAAI;AAAA,QACjB,QAAQ,KAAK,KAAK;AAAA;AAAA,QAClB;AAAA,QACA;AAAA,QACA;AAAA,QACA,OAAO,CAAC;AAAA,QACR,OAAO;AAAA,QACP,OAAO;AAAA,QACP,gBAAgB;AAAA,QAChB,WAAW,KAAK,KAAK;AAAA,MACtB;AACA,6BAAuB,KAAK,KAAK,WAAW,IAAI,KAAK;AACrD,YAAM,IAAI,MAAM,OAAO,qBAAY;AACnC,WAAK,gBAAgB,IAAI,EAAE,MAAM,GAAG;AAEpC,WAAK,IAAI,YAAY,KAAK,IAAI,SAC5B,OAAO,KAAK,EACZ,KAAK,eAAe,+BAA+B,EACnD,MAAM,UAAU,UAAU,EAC1B,OAAO,QAAQ,EACf,MAAM,UAAU,MAAM,EACtB,MAAM,iBAAiB,MAAM,EAC7B,MAAM,WAAW,WAAW,EAC5B,KAAK,eAAe,EACpB,GAAG,SAAS,YAAY;AACxB,cAAM,EAAE,KAAAA,MAAK,OAAAC,QAAO,MAAAC,MAAK,IAAI,KAAK,cAAc,MAAM,CAAC;AACvD,cAAM,OAAO,KAAK,SAAS,EAAE,KAAAF,MAAK,OAAAC,QAAO,MAAAC,MAAK,CAAC;AAC/C,cAAM,KAAK,SAAS,IAAI;AAAA,MACzB,CAAC;AAAA,IACH,WAAW,WAAW,OAAO,OAAO,UAAU,WAAW,KAAK,KAAK,OAAO,UAAU,WAAW,IAAI,GAAG;AAGrG,YAAM,EAAE,KAAK,OAAO,KAAK,IAAI;AAC7B,YAAM,OAAO,KAAK,SAAS,EAAE,KAAK,OAAO,KAAK,CAAC;AAC/C,YAAM,KAAK,SAAS,IAAI;AAAA,IACzB,OAAO;AACN,YAAM,IAAI,MAAM,2BAA2B;AAAA,IAC5C;AAAA,EACD;AAAA,EAEA,SAAS,MAAM;AACd,UAAM,EAAE,KAAK,OAAO,KAAK,IAAI;AAC7B,QAAI,CAAC,OAAO,CAAC,OAAO,UAAU,KAAK,KAAK,CAAC,OAAO,UAAU,IAAI,EAAG,OAAM,IAAI,MAAM,oBAAoB;AACrG,UAAM,OAAO,eAAe,UAAU,KAAK,IAAI,QAAQ;AAEvD,UAAM,OAAO;AAAA,MACZ;AAAA,MACA;AAAA,MACA;AAAA,MACA,MAAM;AAAA,MACN;AAAA,MACA,oBAAoB;AAAA,IACrB;AACA,WAAO;AAAA,EACR;AACD;",
+  "names": ["chr", "start", "stop"]
+}

package/dist/chunk-LBXZGYU5.js

@@ -0,0 +1,368 @@
+import {
+  fillTermWrapper,
+  termsettingInit
+} from "./chunk-NVB7MQLH.js";
+import {
+  isNumericTerm
+} from "./chunk-6ITDJ5UR.js";
+import {
+  select_default
+} from "./chunk-NDWTN4U5.js";
+
+// plots/matrix/matrix.renderers.js
+function setRenderers(self) {
+  self.render = function() {
+    const s = self.settings.matrix;
+    const l = self.layout;
+    const d = self.dimensions;
+    const duration = self.dom.svg.attr("width") ? s.duration : 0;
+    self.dom.clipRect.attr("x", d.xOffset - 1).attr("y", 0).attr("width", d.mainw + 3).attr("height", d.mainh + 500);
+    self.renderSerieses(s, l, d, duration);
+    self.renderLabels(s, l, d, duration);
+    self.renderDivideByLabel(s, l, d, duration);
+    self.dom.colBeam.attr("width", d.dx).attr("height", d.mainh).style("stroke", s.beamStroke);
+    self.dom.rowBeam.attr("width", d.zoomedMainW).attr("height", s.rowh).style("stroke", s.beamStroke);
+  };
+  self.renderSerieses = function(s, l, d, duration) {
+    if (self.prevUseCanvas != s.useCanvas) {
+      self.dom.seriesesG.selectAll("g").remove();
+    }
+    if (s.useCanvas) {
+      const _g = self.dom.seriesesG.selectAll("g");
+      const g = (
+        /*(_g.size() && _g) ||*/
+        self.dom.seriesesG.append("g").datum(this.serieses)
+      );
+      self.renderCanvas(this.serieses, g, d, s, _g, duration);
+    } else {
+      self.dom.seriesesG.attr("transform", `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`);
+      const sg = self.dom.seriesesG.selectAll(".sjpp-mass-series-g").data(this.serieses, (series) => series.tw.$id);
+      sg.exit().remove();
+      sg.each(self.renderSeries);
+      sg.enter().append("g").attr("class", "sjpp-mass-series-g").style("opacity", 1e-3).each(self.renderSeries);
+      self.mouseout();
+    }
+    self.prevUseCanvas = s.useCanvas;
+  };
+  self.renderSeries = async function(series) {
+    const s = self.settings.matrix;
+    const d = self.dimensions;
+    const g = select_default(this);
+    const duration = g.attr("transform") ? s.duration : 0;
+    g.attr("transform", `translate(${series.x},${series.y})`).style("opacity", 1);
+    const last = series.cells[series.cells.length - 1];
+    const height = series.y + last?.y + s.rowh;
+    const rects = g.selectAll("rect").data(series.cells, (cell) => cell.sample + ";;" + cell.tw.$id + ";;" + cell.valueIndex);
+    rects.exit().remove();
+    rects.each(self.renderCell);
+    rects.enter().append("rect").each(self.renderCell);
+  };
+  self.renderCanvas = async function(serieses, g, d, s, _g, duration) {
+    const pxr = window.devicePixelRatio <= 1 ? 1 : window.devicePixelRatio;
+    g.selectAll("*").remove();
+    const width = d.imgW;
+    const height = self.dimensions.mainh;
+    const canvas = window.OffscreenCanvas ? new OffscreenCanvas(width * pxr, height * pxr) : (
+      // TODO: no need to support older browser versions???
+      self.dom.holder.append("canvas").attr("width", pxr * width).attr("height", pxr * height).style("opacity", 0).node()
+    );
+    const ctx = canvas.getContext("2d");
+    ctx.imageSmoothingEnabled = false;
+    ctx.imageSmoothingQuality = "high";
+    ctx.scale(pxr, pxr);
+    for (const series of serieses) {
+      for (const cell of series.cells) {
+        self.renderCellWithCanvas(ctx, cell, series, s, d, series.y);
+      }
+    }
+    if (window.OffscreenCanvas) {
+      const reader = new FileReader();
+      reader.addEventListener(
+        "load",
+        () => {
+          _g?.remove();
+          self.dom.seriesesG.attr("transform", `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`);
+          g.selectAll("image").remove();
+          g.append("image").attr("xlink:href", reader.result).attr("x", d.xMin).attr("width", width).attr("height", height);
+        },
+        false
+      );
+      const blob = await canvas.convertToBlob({ quality: 1 });
+      const dataURL = reader.readAsDataURL(blob);
+    } else {
+      _g?.remove();
+      self.dom.seriesesG.attr("transform", `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`);
+      const dataURL = canvas.toDataURL();
+      const ratio = window.devicePixelRatio * window.devicePixelRatio;
+      g.append("image").attr("width", width).attr("height", height).attr("xlink:href", dataURL);
+      if (!window.OffscreenCanvas) canvas.remove();
+    }
+    self.mouseout();
+  };
+  self.renderCellWithCanvas = function(ctx, cell, series, s, d, _y) {
+    if (!cell.fill)
+      cell.fill = cell.$id in self.colorScaleByTermId ? self.colorScaleByTermId[cell.$id](cell.key) : getRectFill(cell);
+    const x = cell.x ? cell.x - d.xMin : 0;
+    const y = _y ? _y + cell.y : cell.y || 0;
+    const width = s.useMinPixelWidth ? Math.max(cell.width || d.colw, d.pxw) : cell.width || d.colw;
+    const height = "height" in cell ? cell.height : s.rowh;
+    ctx.fillStyle = cell.fill;
+    ctx.fillRect(x, y, width, height);
+    const borderWidth = Math.min(width, height) * 0.1;
+    if (cell.border) {
+      ctx.lineWidth = borderWidth;
+      ctx.strokeStyle = "white";
+      ctx.strokeRect(x, y, width, height);
+    }
+  };
+  self.renderCell = function(cell) {
+    if (!cell.fill)
+      cell.fill = cell.$id in self.colorScaleByTermId ? self.colorScaleByTermId[cell.$id](cell.key) : getRectFill(cell);
+    const s = self.settings.matrix;
+    const rect = select_default(this).attr("x", cell.x || 0).attr("y", cell.y || 0).attr("width", cell.width || self.dimensions.colw).attr("height", "height" in cell ? Math.max(0, cell.height) : s.rowh).attr("shape-rendering", "crispEdges").attr("fill", cell.fill);
+    if (cell.border) {
+      rect.attr("stroke", "white").attr("stroke-width", 0.8);
+    }
+  };
+  self.renderLabels = function(s, l, d, duration) {
+    for (const direction of ["top", "btm", "left", "right"]) {
+      let renderLabel2 = function(lab) {
+        const g = select_default(this);
+        g.attr("transform", side.attr.labelGTransform);
+        if (!g.select(":scope>text").size()) g.append("text");
+        const showContAxis = !side.isGroup && lab.grp?.type !== "hierCluster" && lab.tw?.q?.mode == "continuous";
+        const labelText = side.label(lab);
+        const text = g.select(":scope>text").attr("fill", "#000");
+        let continuousBarHAdjust;
+        const twSpecificSettings = self.config.settings.matrix.twSpecificSettings;
+        const twSettingsBarH = twSpecificSettings[lab.tw?.$id]?.contBarH;
+        if (twSettingsBarH && s.barh) continuousBarHAdjust = (twSettingsBarH - s.barh) * 0.5;
+        text.attr(
+          "display",
+          lab.grp?.type === "hierCluster" && s.clusterRowh < 6 ? "none" : side.attr.fontSize < 6 || labelText === "configure" ? "none" : ""
+        ).attr("font-size", lab.grp?.type === "hierCluster" ? Math.max(4, s.clusterRowh - 4) : side.attr.fontSize).attr("text-anchor", side.attr.labelAnchor).attr(
+          "transform",
+          side.attr.labelTransform + (continuousBarHAdjust ? ` translate(0,${continuousBarHAdjust})` : "")
+        ).attr("cursor", "pointer").attr(side.attr.textpos.coord, side.attr.textpos.factor * (showContAxis ? 30 : 0));
+        if (!Array.isArray(labelText)) {
+          text.text(labelText);
+          text.attr(
+            "y",
+            lab.grp?.type !== "hierCluster" && lab.tw?.q?.mode == "continuous" ? 10 : lab.grp?.type === "hierCluster" ? 0.1 * s.clusterRowh : 0
+          );
+          if (lab.grp?.type !== "hierCluster" && lab.tw?.q?.mode == "continuous") text.attr("x", -20);
+        } else {
+          text.text("");
+          const tspan = text.selectAll("tspan").data(labelText);
+          tspan.enter().append("tspan").attr("class", getTspanCls2).attr("dx", getTspanDx2).attr("font-size", getTspanFontSize2).text(getTspanText2);
+        }
+        text.on("mouseover", labelText === "configure" ? () => text.attr("opacity", 0.5) : null).on("mouseout", labelText === "configure" ? () => text.attr("opacity", 0) : null);
+        const hasAxis = g.select(".sjpp-matrix-cell-axis").size() && true;
+        if (showContAxis && labelText) {
+          if (!hasAxis) {
+            g.append("g").attr("class", "sjpp-matrix-cell-axis").attr("shape-rendering", "crispEdges");
+          }
+          const axisg = g.select(".sjpp-matrix-cell-axis");
+          axisg.selectAll("*").remove();
+          const domain = [lab.counts.maxval, lab.counts.minval];
+          if (s.transpose) domain.reverse();
+          const twSpecificSettings2 = self.config.settings.matrix.twSpecificSettings;
+          const twSettings = twSpecificSettings2[lab.tw.$id];
+          const x = !s.transpose ? 0 : twSettings.contBarGap - 1 - lab.labelOffset;
+          const y = !s.transpose ? twSettings.contBarGap - 1 - lab.labelOffset : 0;
+          axisg.attr("shape-rendering", "crispEdges").attr("transform", `translate(${x},${y})`).call(side.attr.axisFxn(lab.scales.full.domain(lab.scales.tickValues)).tickValues(lab.scales.tickValues));
+        } else if (hasAxis) {
+          g.select(".sjpp-matrix-cell-axis").remove();
+        }
+      }, getTspanCls2 = function(d2) {
+        return d2.cls;
+      }, getTspanDx2 = function(d2) {
+        return d2.dx;
+      }, getTspanFontSize2 = function(d2) {
+        return d2.fontSize || side.attr.fontSize;
+      }, getTspanText2 = function(d2) {
+        return d2.text;
+      };
+      var renderLabel = renderLabel2, getTspanCls = getTspanCls2, getTspanDx = getTspanDx2, getTspanFontSize = getTspanFontSize2, getTspanText = getTspanText2;
+      const side = l[direction];
+      side.box.style("display", side.display || "").attr("transform", side.attr.boxTransform);
+      const labels = side.box.selectAll(".sjpp-matrix-label").data(side.data, side.key);
+      labels.exit().remove();
+      labels.each(renderLabel2);
+      labels.enter().append("g").attr("class", "sjpp-matrix-label").each(renderLabel2);
+    }
+  };
+  self.colLabelGTransform = (lab, grpIndex) => {
+    const s = self.settings.matrix;
+    const d = self.dimensions;
+    lab.labelOffset = 0.8 * d.colw;
+    const x = lab.grpIndex * s.colgspace + lab.totalIndex * d.dx + lab.labelOffset + lab.totalHtAdjustments;
+    const y = 0;
+    return `translate(${x + d.seriesXoffset},${y})`;
+  };
+  self.colGrpLabelGTransform = (lab, grpIndex) => {
+    const s = self.settings.matrix;
+    const d = self.dimensions;
+    const len = (lab.processedLst || lab.grp.lst).length;
+    const x = lab.grpIndex * s.colgspace + lab.prevGrpTotalIndex * d.dx + len * d.dx / 2 + s.grpLabelFontSize / 2 + lab.totalHtAdjustments;
+    return `translate(${x + d.seriesXoffset},0)`;
+  };
+  self.rowLabelGTransform = (lab, grpIndex) => {
+    const s = self.settings.matrix;
+    const d = self.dimensions;
+    const x = 0;
+    lab.labelOffset = 0.7 * (lab.grp.type == "hierCluster" ? s.clusterRowh : s.rowh);
+    const y = lab.grpIndex * s.rowgspace + lab.totalIndex * d.dy + lab.labelOffset + lab.totalHtAdjustments;
+    return `translate(${x},${y})`;
+  };
+  self.rowGrpLabelGTransform = (lab, grpIndex) => {
+    const s = self.settings.matrix;
+    const d = self.dimensions;
+    const len = (lab.processedLst || lab.grp.lst).length;
+    const x = lab.tw?.q?.mode == "continuous" ? 20 : 0;
+    const y = lab.grpIndex * s.rowgspace + lab.prevGrpTotalIndex * d.dy + len * d.dy / 2 + s.grpLabelFontSize / 2 + lab.totalHtAdjustments;
+    return `translate(${x},${y})`;
+  };
+  self.rowAxisGTransform = (lab, grpIndex) => {
+    const s = self.settings.matrix;
+    const d = self.dimensions;
+    const x = 0;
+    const y = lab.grpIndex * s.rowgspace + lab.totalIndex * d.dy + 0.7 * s.rowh + lab.totalHtAdjustments;
+    return `translate(${x},${y})`;
+  };
+  self.renderDivideByLabel = async (s, l, d) => {
+    self.dom.mainG.selectAll(".sjpp-matrix-divide-by-label").remove();
+    if (!self.config.divideBy) return;
+    const name = self.config.divideBy?.term.name || "";
+    const text = name.length <= s.rowlabelmaxchars ? name : name.slice(0, s.rowlabelmaxchars) + "\u2026";
+    const sides = !s.transpose ? [l.left, l.right] : [l.top, l.bottom];
+    const box = sides.find((d2) => !d2.isGroup)?.box;
+    const y = (s.collabelpos == "top" ? d.mainh + s.collabelmaxchars : -s.collabelmaxchars) + 8;
+    const anchor = s.rowlabelpos == "left" ? "end" : "start";
+    const cl = s.controlLabels;
+    const gNote = box.append("g").attr("class", "sjpp-matrix-divide-by-label").attr("transform", `translate(0, ${y})`);
+    gNote.append("text").attr("text-anchor", anchor).attr("font-style", "italic").attr("y", -20).text(`${cl.Samples} grouped by`);
+    const g = box.datum({ tw: self.config.divideBy }).append("g").attr("class", "sjpp-matrix-divide-by-label").attr("transform", `translate(0, ${y})`).on("click", (event, d2) => {
+      pill.showMenu(event, textElem.node());
+    });
+    const textElem = g.append("text").attr("text-anchor", anchor).attr("font-weight", 600).text(text);
+    g.append("title").text(`${cl.Samples} are grouped by this gene or variable. Click to edit.`);
+    const customMenuOptions = [];
+    const tvsKey = isNumericTerm(self.config.divideBy.term) ? "ranges" : "values";
+    if (self.config.legendValueFilter.lst?.find(
+      (l2) => l2.legendGrpName == self.config.divideBy.term.id || l2.legendGrpName == self.config.divideBy.term.name
+    )?.tvs[tvsKey]?.length) {
+      customMenuOptions.push({ label: `Show filtered ${cl.samples}`, callback: self.showDeletedSampleGroups });
+    }
+    const pill = await termsettingInit({
+      menuOptions: "{edit,replace,remove}",
+      //numericEditMenuVersion: opts.numericEditMenuVersion,
+      customMenuOptions,
+      //custom menu options other than menuOptions
+      vocabApi: self.app.vocabApi,
+      vocab: self.state.vocab,
+      //activeCohort: opts.state?.activeCohort,
+      holder: g,
+      debug: self.opts.debug,
+      usecase: { target: "matrix" },
+      getBodyParams: () => {
+        const currentGeneNames = self.termOrder.filter((t) => t.tw.term.type === "geneVariant").map(
+          (t) => t.tw.term.chr ? `${t.tw.term.chr}:${t.tw.term.start}-${t.tw.term.stop}` : t.tw.term.gene || t.tw.term.name
+        );
+        if (currentGeneNames.length) return { currentGeneNames };
+        return {};
+      },
+      callback: async (tw) => {
+        if (self.dom.loadingDiv && self.dom.svg) {
+          self.dom.loadingDiv.selectAll("*").remove();
+          self.dom.loadingDiv.html("").style("display", "").style("position", "relative").style("left", "45%");
+          self.dom.loadingDiv.html("Processing data ...");
+          self.dom.svg.style("opacity", 0.1).style("pointer-events", "none");
+        }
+        if (tw && !tw.q) throw "data.q{} missing from pill callback";
+        if (tw?.term && isNumericTerm(tw.term)) {
+          tw.q = { ...tw.q, mode: "discrete" };
+        }
+        if (tw) await fillTermWrapper(tw, self.app.vocabApi);
+        await pill.main(tw ? tw : { term: null, q: null });
+        box.datum({ tw });
+        self.app.dispatch({
+          type: "plot_edit",
+          id: self.id,
+          config: {
+            divideBy: tw,
+            legendValueFilter: self.mayRemoveTvsEntry(self.config.divideBy)
+          }
+        });
+      }
+    });
+    const arg = {
+      term: self.config.divideBy.term,
+      q: self.config.divideBy.q
+    };
+    if (self.config.divideBy.$id) arg.$id = self.config.divideBy.$id;
+    pill.main(arg);
+  };
+  self.adjustSvgDimensions = async function(prevTranspose) {
+    const s = self.settings.matrix;
+    const hc = self.settings.hierCluster || {};
+    const l = self.layout;
+    const hcHeight = !hc.yDendrogramHeight ? 0 : hc.yDendrogramHeight + (l.top.display === "none" ? 0 : 10);
+    const hcWidth = hc.xDendrogramHeight || 0;
+    const d = self.dimensions;
+    const duration = self.dom.svg.attr("width") ? s.duration : 0;
+    await sleep(prevTranspose == s.transpose ? duration : s.duration);
+    const topBox = l.top.box.node().getBBox();
+    const btmBox = l.btm.box.node().getBBox();
+    const leftBox = l.left.box.node().getBBox();
+    const rtBox = l.right.box.node().getBBox();
+    const legendBox = self.dom.legendG.node().getBBox();
+    const seriesBox = self.dom.seriesesG.node().getBBox();
+    d.extraWidth = leftBox.width + rtBox.width + s.margin.left + s.margin.right + s.rowlabelgap * 2;
+    d.extraHeight = topBox.height + btmBox.height + s.margin.top + s.margin.bottom + s.collabelgap * 2;
+    d.svgw = d.mainw + d.extraWidth + hcWidth;
+    d.svgh = d.mainh + d.extraHeight + legendBox.height + 20 + s.scrollHeight + hcHeight;
+    self.dom.svg.attr("width", d.svgw).attr("height", d.svgh);
+    let maxLabelWidth = self.type == "hierCluster" ? 0 : leftBox.width, maxLabelNumChars = 0;
+    if (hc.xDendrogramHeight) {
+      self.dom.termLabelG.selectAll(".sjpp-matrix-label").each(function(d2) {
+        if (d2.grp.type !== "hierCluster") return;
+        const box = this.getBBox();
+        if (box.width > maxLabelWidth) {
+          maxLabelWidth = box.width;
+          maxLabelNumChars = d2.label.length;
+        }
+      });
+    }
+    const x = -l.left.offset + hcWidth + maxLabelWidth;
+    const xAdjust = !hc.xDendrogramHeight ? 0 : Math.max(leftBox.width - (hc.xDendrogramHeight + maxLabelWidth), 0);
+    const y = (l.top.display == "none" ? 0 : topBox.height) - l.top.offset + hcHeight;
+    self.dom.mainG.attr("transform", `translate(${x + xAdjust},${y})`);
+    self.dom.clipRect.attr("y", -y).attr("height", d.mainh + 500 + y);
+    const legendX = d.xOffset + (s.transpose ? 20 : 0);
+    const legendY = d.yOffset + d.mainh + s.collabelgap + (l.btm.display == "none" ? 0 : btmBox.height) + 20;
+    self.dom.legendG.attr("transform", `translate(${legendX},${legendY})`);
+    if (hc.xDendrogramHeight) {
+      const dendroX = maxLabelWidth + xAdjust - l.left.offset + d.xOffset - d.dx / 2;
+      self.dom.hcClipRect.attr("x", dendroX + hcWidth + d.dx / 2).attr("y", 0).attr("width", d.mainw + 3).attr("height", d.mainh + hc.yDendrogramHeight + 500);
+      self.topDendroX = dendroX + d.seriesXoffset;
+      self.dom.topDendrogram.attr("transform", `translate(${self.topDendroX}, 0)`);
+      const y2 = l.top.display == "none" ? 0 : topBox.height + s.collabelgap;
+      self.dom.leftDendrogram.attr("transform", `translate(${dendroX - maxLabelWidth - 10}, ${y2})`);
+    }
+  };
+}
+function getRectFill(d) {
+  if (d.fill) return d.fill;
+  const cls = d.class || Array.isArray(d.values) && d.values[0].class;
+  if (!cls) console.log;
+  return cls ? mclass[cls].color : "#555";
+}
+function sleep(ms) {
+  return new Promise((resolve) => setTimeout(resolve, ms));
+}
+
+export {
+  setRenderers
+};
+//# sourceMappingURL=chunk-LBXZGYU5.js.map

package/dist/chunk-LBXZGYU5.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/matrix/matrix.renderers.js"],
+  "sourcesContent": ["import { select } from 'd3-selection'\nimport { fillTermWrapper, termsettingInit } from '#termsetting'\nimport { isNumericTerm } from '#shared/terms.js'\n\nexport function setRenderers(self) {\n\tself.render = function () {\n\t\tconst s = self.settings.matrix\n\t\tconst l = self.layout\n\t\tconst d = self.dimensions\n\t\tconst duration = self.dom.svg.attr('width') ? s.duration : 0\n\n\t\tself.dom.clipRect\n\t\t\t.attr('x', d.xOffset - 1)\n\t\t\t.attr('y', 0)\n\t\t\t.attr('width', d.mainw + 3)\n\t\t\t// add 500 so that the column labels are not clipped\n\t\t\t.attr('height', d.mainh + 500)\n\n\t\t// const x = self.type == 'hierCluster' ? self.settings.hierCluster.xDendrogramHeight : 0\n\t\t// const y = self.type == 'hierCluster' ? self.settings.hierCluster.yDendrogramHeight : 0\n\t\t// self.dom.mainG\n\t\t// \t.attr('transform', `translate(${x},${y})`)\n\n\t\tself.renderSerieses(s, l, d, duration)\n\t\tself.renderLabels(s, l, d, duration)\n\t\tself.renderDivideByLabel(s, l, d, duration)\n\n\t\tself.dom.colBeam.attr('width', d.dx).attr('height', d.mainh).style('stroke', s.beamStroke)\n\n\t\tself.dom.rowBeam.attr('width', d.zoomedMainW).attr('height', s.rowh).style('stroke', s.beamStroke)\n\t}\n\n\tself.renderSerieses = function (s, l, d, duration) {\n\t\tif (self.prevUseCanvas != s.useCanvas) {\n\t\t\tself.dom.seriesesG.selectAll('g').remove()\n\t\t}\n\t\tif (s.useCanvas) {\n\t\t\tconst _g = self.dom.seriesesG.selectAll('g')\n\t\t\tconst g = /*(_g.size() && _g) ||*/ self.dom.seriesesG.append('g').datum(this.serieses)\n\t\t\tself.renderCanvas(this.serieses, g, d, s, _g, duration)\n\t\t} else {\n\t\t\tself.dom.seriesesG\n\t\t\t\t//.transition()\n\t\t\t\t//.duration(duration)\n\t\t\t\t.attr('transform', `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`)\n\n\t\t\tconst sg = self.dom.seriesesG.selectAll('.sjpp-mass-series-g').data(this.serieses, series => series.tw.$id)\n\t\t\tsg.exit().remove()\n\t\t\tsg.each(self.renderSeries)\n\t\t\tsg.enter().append('g').attr('class', 'sjpp-mass-series-g').style('opacity', 0.001).each(self.renderSeries)\n\t\t\t// need to reset imgBox and beam highlighters after rendering to avoid misaligned beam highlighters\n\t\t\tself.mouseout()\n\t\t}\n\t\tself.prevUseCanvas = s.useCanvas\n\t}\n\n\tself.renderSeries = async function (series) {\n\t\tconst s = self.settings.matrix\n\t\tconst d = self.dimensions\n\t\tconst g = select(this)\n\t\tconst duration = g.attr('transform') ? s.duration : 0\n\n\t\tg //.transition()\n\t\t\t//.duration(duration)\n\t\t\t.attr('transform', `translate(${series.x},${series.y})`)\n\t\t\t.style('opacity', 1)\n\t\tconst last = series.cells[series.cells.length - 1]\n\t\tconst height = series.y + last?.y + s.rowh\n\n\t\tconst rects = g\n\t\t\t.selectAll('rect')\n\t\t\t.data(series.cells, cell => cell.sample + ';;' + cell.tw.$id + ';;' + cell.valueIndex)\n\t\trects.exit().remove()\n\t\trects.each(self.renderCell)\n\t\trects.enter().append('rect').each(self.renderCell)\n\t}\n\n\tself.renderCanvas = async function (serieses, g, d, s, _g, duration) {\n\t\tconst pxr = window.devicePixelRatio <= 1 ? 1 : window.devicePixelRatio\n\t\t// TODO: may not need to remove the image???\n\t\tg.selectAll('*').remove()\n\t\tconst width = d.imgW\n\t\tconst height = self.dimensions.mainh\n\t\tconst canvas = window.OffscreenCanvas\n\t\t\t? new OffscreenCanvas(width * pxr, height * pxr)\n\t\t\t: // TODO: no need to support older browser versions???\n\t\t\t  self.dom.holder\n\t\t\t\t\t.append('canvas')\n\t\t\t\t\t.attr('width', pxr * width)\n\t\t\t\t\t.attr('height', pxr * height)\n\t\t\t\t\t.style('opacity', 0)\n\t\t\t\t\t.node()\n\t\tconst ctx = canvas.getContext('2d')\n\t\tctx.imageSmoothingEnabled = false\n\t\tctx.imageSmoothingQuality = 'high'\n\t\t//ctx.lineWidth = 0.5\n\t\t//ctx.setTransform(pxr, 0, 0, pxr, 0, 0)\n\t\tctx.scale(pxr, pxr)\n\t\tfor (const series of serieses) {\n\t\t\tfor (const cell of series.cells) {\n\t\t\t\tself.renderCellWithCanvas(ctx, cell, series, s, d, series.y)\n\t\t\t}\n\t\t}\n\n\t\tif (window.OffscreenCanvas) {\n\t\t\tconst reader = new FileReader()\n\t\t\treader.addEventListener(\n\t\t\t\t'load',\n\t\t\t\t() => {\n\t\t\t\t\t// remove a previously rendered image, if applicable, right before replacing it\n\t\t\t\t\t// so that there will be no flicker on update\n\t\t\t\t\t_g?.remove()\n\t\t\t\t\tself.dom.seriesesG\n\t\t\t\t\t\t//.transition()\n\t\t\t\t\t\t//.duration(duration)\n\t\t\t\t\t\t.attr('transform', `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`)\n\n\t\t\t\t\tg.selectAll('image').remove()\n\t\t\t\t\tg.append('image')\n\t\t\t\t\t\t.attr('xlink:href', reader.result)\n\t\t\t\t\t\t.attr('x', d.xMin) //d.seriesXoffset + d.xMin) //d.xMin) // + d.xOffset) //d.seriesXoffset - d.xMin)\n\t\t\t\t\t\t.attr('width', width)\n\t\t\t\t\t\t.attr('height', height)\n\t\t\t\t},\n\t\t\t\tfalse\n\t\t\t)\n\t\t\tconst blob = await canvas.convertToBlob({ quality: 1 })\n\t\t\tconst dataURL = reader.readAsDataURL(blob)\n\t\t} else {\n\t\t\t_g?.remove()\n\t\t\tself.dom.seriesesG\n\t\t\t\t//.transition()\n\t\t\t\t//.duration(duration)\n\t\t\t\t.attr('transform', `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`)\n\n\t\t\tconst dataURL = canvas.toDataURL()\n\t\t\tconst ratio = window.devicePixelRatio * window.devicePixelRatio\n\t\t\tg.append('image').attr('width', width).attr('height', height).attr('xlink:href', dataURL)\n\t\t\tif (!window.OffscreenCanvas) canvas.remove()\n\t\t}\n\t\t// need to reset imgBox and beam highlighters after rendering to avoid misaligned beam highlighters\n\t\tself.mouseout()\n\t}\n\n\tself.renderCellWithCanvas = function (ctx, cell, series, s, d, _y) {\n\t\tif (!cell.fill)\n\t\t\tcell.fill = cell.$id in self.colorScaleByTermId ? self.colorScaleByTermId[cell.$id](cell.key) : getRectFill(cell)\n\t\tconst x = cell.x ? cell.x - d.xMin : 0\n\t\tconst y = _y ? _y + cell.y : cell.y || 0\n\t\tconst width = s.useMinPixelWidth ? Math.max(cell.width || d.colw, d.pxw) : cell.width || d.colw\n\t\tconst height = 'height' in cell ? cell.height : s.rowh\n\t\tctx.fillStyle = cell.fill\n\t\tctx.fillRect(x, y, width, height)\n\n\t\tconst borderWidth = Math.min(width, height) * 0.1\n\t\tif (cell.border) {\n\t\t\t// Draw the border\n\t\t\tctx.lineWidth = borderWidth // Set border width, you can adjust this value\n\t\t\tctx.strokeStyle = 'white' // Set the border color, you can use any color\n\t\t\tctx.strokeRect(x, y, width, height) // Draw the border\n\t\t}\n\t}\n\n\tself.renderCell = function (cell) {\n\t\tif (!cell.fill)\n\t\t\tcell.fill = cell.$id in self.colorScaleByTermId ? self.colorScaleByTermId[cell.$id](cell.key) : getRectFill(cell)\n\t\tconst s = self.settings.matrix\n\t\tconst rect = select(this)\n\t\t\t//.transition()\n\t\t\t// TODO: use s.duration if there is a way to avoid any remaining glitchy transitions\n\t\t\t// using the cell index in the .data() bind function seems to fix glitches in split cells,\n\t\t\t// but cells with overriden values flashes during a transition\n\t\t\t//.duration(0) //'x' in cell ? s.duration : 0)\n\t\t\t.attr('x', cell.x || 0)\n\t\t\t.attr('y', cell.y || 0)\n\t\t\t.attr('width', cell.width || self.dimensions.colw)\n\t\t\t.attr('height', 'height' in cell ? Math.max(0, cell.height) : s.rowh)\n\t\t\t.attr('shape-rendering', 'crispEdges')\n\t\t\t.attr('fill', cell.fill)\n\t\tif (cell.border) {\n\t\t\trect.attr('stroke', 'white').attr('stroke-width', 0.8)\n\t\t}\n\t}\n\n\tself.renderLabels = function (s, l, d, duration) {\n\t\tfor (const direction of ['top', 'btm', 'left', 'right']) {\n\t\t\tconst side = l[direction]\n\t\t\tside.box\n\t\t\t\t.style('display', side.display || '')\n\t\t\t\t//.transition()\n\t\t\t\t//.duration(duration)\n\t\t\t\t.attr('transform', side.attr.boxTransform)\n\n\t\t\tconst labels = side.box.selectAll('.sjpp-matrix-label').data(side.data, side.key)\n\t\t\tlabels.exit().remove()\n\t\t\tlabels.each(renderLabel)\n\t\t\tlabels.enter().append('g').attr('class', 'sjpp-matrix-label').each(renderLabel)\n\n\t\t\tfunction renderLabel(lab) {\n\t\t\t\tconst g = select(this)\n\t\t\t\t//const textduration = g.attr('transform') ? duration : 0\n\t\t\t\tg //.transition()\n\t\t\t\t\t//.duration(textduration)\n\t\t\t\t\t.attr('transform', side.attr.labelGTransform)\n\n\t\t\t\tif (!g.select(':scope>text').size()) g.append('text')\n\t\t\t\tconst showContAxis = !side.isGroup && lab.grp?.type !== 'hierCluster' && lab.tw?.q?.mode == 'continuous'\n\t\t\t\tconst labelText = side.label(lab)\n\t\t\t\tconst text = g.select(':scope>text').attr('fill', '#000')\n\n\t\t\t\tlet continuousBarHAdjust\n\t\t\t\tconst twSpecificSettings = self.config.settings.matrix.twSpecificSettings\n\t\t\t\tconst twSettingsBarH = twSpecificSettings[lab.tw?.$id]?.contBarH\n\t\t\t\tif (twSettingsBarH && s.barh) continuousBarHAdjust = (twSettingsBarH - s.barh) * 0.5\n\n\t\t\t\ttext\n\t\t\t\t\t//.transition()\n\t\t\t\t\t//.duration(textduration)\n\t\t\t\t\t.attr(\n\t\t\t\t\t\t'display',\n\t\t\t\t\t\tlab.grp?.type === 'hierCluster' && s.clusterRowh < 6\n\t\t\t\t\t\t\t? 'none'\n\t\t\t\t\t\t\t: side.attr.fontSize < 6 || labelText === 'configure'\n\t\t\t\t\t\t\t? 'none'\n\t\t\t\t\t\t\t: ''\n\t\t\t\t\t)\n\t\t\t\t\t.attr('font-size', lab.grp?.type === 'hierCluster' ? Math.max(4, s.clusterRowh - 4) : side.attr.fontSize)\n\t\t\t\t\t.attr('text-anchor', side.attr.labelAnchor)\n\t\t\t\t\t.attr(\n\t\t\t\t\t\t'transform',\n\t\t\t\t\t\tside.attr.labelTransform + (continuousBarHAdjust ? ` translate(0,${continuousBarHAdjust})` : '')\n\t\t\t\t\t)\n\t\t\t\t\t.attr('cursor', 'pointer')\n\t\t\t\t\t.attr(side.attr.textpos.coord, side.attr.textpos.factor * (showContAxis ? 30 : 0))\n\n\t\t\t\tif (!Array.isArray(labelText)) {\n\t\t\t\t\ttext.text(labelText)\n\t\t\t\t\ttext.attr(\n\t\t\t\t\t\t'y',\n\t\t\t\t\t\tlab.grp?.type !== 'hierCluster' && lab.tw?.q?.mode == 'continuous'\n\t\t\t\t\t\t\t? 10\n\t\t\t\t\t\t\t: lab.grp?.type === 'hierCluster'\n\t\t\t\t\t\t\t? 0.1 * s.clusterRowh\n\t\t\t\t\t\t\t: 0\n\t\t\t\t\t)\n\t\t\t\t\tif (lab.grp?.type !== 'hierCluster' && lab.tw?.q?.mode == 'continuous') text.attr('x', -20)\n\t\t\t\t} else {\n\t\t\t\t\t// this is required because labelText in the if-condition is not wrapped in tspan,\n\t\t\t\t\t// so the text.selectAll('tspan') below will not remove previous label\n\t\t\t\t\ttext.text('')\n\n\t\t\t\t\tconst tspan = text.selectAll('tspan').data(labelText)\n\t\t\t\t\t//tspan.exit().remove()\n\t\t\t\t\t//tspan.attr('dx', getTspanDx).attr('font-size', getTspanFontSize).text(getTspanText)\n\t\t\t\t\ttspan\n\t\t\t\t\t\t.enter()\n\t\t\t\t\t\t.append('tspan')\n\t\t\t\t\t\t.attr('class', getTspanCls)\n\t\t\t\t\t\t.attr('dx', getTspanDx)\n\t\t\t\t\t\t.attr('font-size', getTspanFontSize)\n\t\t\t\t\t\t.text(getTspanText)\n\t\t\t\t}\n\n\t\t\t\ttext\n\t\t\t\t\t.on('mouseover', labelText === 'configure' ? () => text.attr('opacity', 0.5) : null)\n\t\t\t\t\t.on('mouseout', labelText === 'configure' ? () => text.attr('opacity', 0) : null)\n\n\t\t\t\tconst hasAxis = g.select('.sjpp-matrix-cell-axis').size() && true\n\t\t\t\tif (showContAxis && labelText) {\n\t\t\t\t\tif (!hasAxis) {\n\t\t\t\t\t\tg.append('g').attr('class', 'sjpp-matrix-cell-axis').attr('shape-rendering', 'crispEdges')\n\t\t\t\t\t}\n\t\t\t\t\tconst axisg = g.select('.sjpp-matrix-cell-axis')\n\t\t\t\t\taxisg.selectAll('*').remove()\n\t\t\t\t\tconst domain = [lab.counts.maxval, lab.counts.minval]\n\t\t\t\t\tif (s.transpose) domain.reverse()\n\n\t\t\t\t\tconst twSpecificSettings = self.config.settings.matrix.twSpecificSettings\n\t\t\t\t\tconst twSettings = twSpecificSettings[lab.tw.$id]\n\t\t\t\t\tconst x = !s.transpose ? 0 : twSettings.contBarGap - 1 - lab.labelOffset\n\t\t\t\t\tconst y = !s.transpose ? twSettings.contBarGap - 1 - lab.labelOffset : 0\n\t\t\t\t\taxisg\n\t\t\t\t\t\t.attr('shape-rendering', 'crispEdges')\n\t\t\t\t\t\t.attr('transform', `translate(${x},${y})`)\n\t\t\t\t\t\t.call(side.attr.axisFxn(lab.scales.full.domain(lab.scales.tickValues)).tickValues(lab.scales.tickValues))\n\t\t\t\t} else if (hasAxis) {\n\t\t\t\t\tg.select('.sjpp-matrix-cell-axis').remove()\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tfunction getTspanCls(d) {\n\t\t\t\treturn d.cls\n\t\t\t}\n\t\t\tfunction getTspanDx(d) {\n\t\t\t\treturn d.dx\n\t\t\t}\n\t\t\tfunction getTspanFontSize(d) {\n\t\t\t\treturn d.fontSize || side.attr.fontSize\n\t\t\t}\n\t\t\tfunction getTspanText(d) {\n\t\t\t\treturn d.text\n\t\t\t}\n\t\t}\n\t}\n\n\tself.colLabelGTransform = (lab, grpIndex) => {\n\t\tconst s = self.settings.matrix\n\t\tconst d = self.dimensions\n\t\tlab.labelOffset = 0.8 * d.colw\n\t\tconst x = lab.grpIndex * s.colgspace + lab.totalIndex * d.dx + lab.labelOffset + lab.totalHtAdjustments\n\t\tconst y = 0 //lab.tw?.q?.mode == 'continuous' ? -30 : 0\n\t\treturn `translate(${x + d.seriesXoffset},${y})`\n\t}\n\n\tself.colGrpLabelGTransform = (lab, grpIndex) => {\n\t\tconst s = self.settings.matrix\n\t\tconst d = self.dimensions\n\t\tconst len = (lab.processedLst || lab.grp.lst).length\n\t\tconst x =\n\t\t\tlab.grpIndex * s.colgspace +\n\t\t\tlab.prevGrpTotalIndex * d.dx +\n\t\t\t(len * d.dx) / 2 +\n\t\t\ts.grpLabelFontSize / 2 +\n\t\t\tlab.totalHtAdjustments\n\t\treturn `translate(${x + d.seriesXoffset},0)`\n\t}\n\n\tself.rowLabelGTransform = (lab, grpIndex) => {\n\t\tconst s = self.settings.matrix\n\t\tconst d = self.dimensions\n\t\tconst x = 0 // lab.tw?.q?.mode == 'continuous' ? -30 : 0\n\t\tlab.labelOffset = 0.7 * (lab.grp.type == 'hierCluster' ? s.clusterRowh : s.rowh)\n\t\tconst y = lab.grpIndex * s.rowgspace + lab.totalIndex * d.dy + lab.labelOffset + lab.totalHtAdjustments\n\t\treturn `translate(${x},${y})`\n\t}\n\n\tself.rowGrpLabelGTransform = (lab, grpIndex) => {\n\t\tconst s = self.settings.matrix\n\t\tconst d = self.dimensions\n\t\tconst len = (lab.processedLst || lab.grp.lst).length\n\t\tconst x = lab.tw?.q?.mode == 'continuous' ? 20 : 0\n\t\tconst y =\n\t\t\tlab.grpIndex * s.rowgspace +\n\t\t\tlab.prevGrpTotalIndex * d.dy +\n\t\t\t(len * d.dy) / 2 +\n\t\t\ts.grpLabelFontSize / 2 +\n\t\t\tlab.totalHtAdjustments\n\t\treturn `translate(${x},${y})`\n\t}\n\n\tself.rowAxisGTransform = (lab, grpIndex) => {\n\t\tconst s = self.settings.matrix\n\t\tconst d = self.dimensions\n\t\tconst x = 0 // lab.tw?.q?.mode == 'continuous' ? -30 : 0\n\t\tconst y = lab.grpIndex * s.rowgspace + lab.totalIndex * d.dy + 0.7 * s.rowh + lab.totalHtAdjustments\n\t\treturn `translate(${x},${y})`\n\t}\n\n\tself.renderDivideByLabel = async (s, l, d) => {\n\t\tself.dom.mainG.selectAll('.sjpp-matrix-divide-by-label').remove()\n\t\tif (!self.config.divideBy) return\n\t\tconst name = self.config.divideBy?.term.name || ''\n\t\tconst text = name.length <= s.rowlabelmaxchars ? name : name.slice(0, s.rowlabelmaxchars) + '\u2026'\n\t\tconst sides = !s.transpose ? [l.left, l.right] : [l.top, l.bottom]\n\t\tconst box = sides.find(d => !d.isGroup)?.box\n\t\tconst y = (s.collabelpos == 'top' ? d.mainh + s.collabelmaxchars : -s.collabelmaxchars) + 8\n\t\tconst anchor = s.rowlabelpos == 'left' ? 'end' : 'start'\n\t\tconst cl = s.controlLabels\n\n\t\tconst gNote = box.append('g').attr('class', 'sjpp-matrix-divide-by-label').attr('transform', `translate(0, ${y})`)\n\n\t\tgNote\n\t\t\t.append('text')\n\t\t\t.attr('text-anchor', anchor)\n\t\t\t.attr('font-style', 'italic')\n\t\t\t.attr('y', -20)\n\t\t\t.text(`${cl.Samples} grouped by`)\n\n\t\tconst g = box\n\t\t\t.datum({ tw: self.config.divideBy })\n\t\t\t.append('g')\n\t\t\t.attr('class', 'sjpp-matrix-divide-by-label')\n\t\t\t.attr('transform', `translate(0, ${y})`)\n\t\t\t.on('click', (event, d) => {\n\t\t\t\tpill.showMenu(event, textElem.node())\n\t\t\t})\n\n\t\tconst textElem = g.append('text').attr('text-anchor', anchor).attr('font-weight', 600).text(text)\n\n\t\tg.append('title').text(`${cl.Samples} are grouped by this gene or variable. Click to edit.`)\n\n\t\tconst customMenuOptions = []\n\t\tconst tvsKey = isNumericTerm(self.config.divideBy.term) ? 'ranges' : 'values'\n\t\tif (\n\t\t\tself.config.legendValueFilter.lst?.find(\n\t\t\t\tl => l.legendGrpName == self.config.divideBy.term.id || l.legendGrpName == self.config.divideBy.term.name\n\t\t\t)?.tvs[tvsKey]?.length\n\t\t) {\n\t\t\tcustomMenuOptions.push({ label: `Show filtered ${cl.samples}`, callback: self.showDeletedSampleGroups })\n\t\t}\n\n\t\tconst pill = await termsettingInit({\n\t\t\tmenuOptions: '{edit,replace,remove}',\n\t\t\t//numericEditMenuVersion: opts.numericEditMenuVersion,\n\n\t\t\tcustomMenuOptions, //custom menu options other than menuOptions\n\t\t\tvocabApi: self.app.vocabApi,\n\t\t\tvocab: self.state.vocab,\n\t\t\t//activeCohort: opts.state?.activeCohort,\n\t\t\tholder: g,\n\t\t\tdebug: self.opts.debug,\n\t\t\tusecase: { target: 'matrix' },\n\t\t\tgetBodyParams: () => {\n\t\t\t\tconst currentGeneNames = self.termOrder\n\t\t\t\t\t.filter(t => t.tw.term.type === 'geneVariant')\n\t\t\t\t\t.map(t =>\n\t\t\t\t\t\tt.tw.term.chr ? `${t.tw.term.chr}:${t.tw.term.start}-${t.tw.term.stop}` : t.tw.term.gene || t.tw.term.name\n\t\t\t\t\t) // TODO term.gene replaces term.name\n\t\t\t\tif (currentGeneNames.length) return { currentGeneNames }\n\t\t\t\treturn {}\n\t\t\t},\n\t\t\tcallback: async tw => {\n\t\t\t\t// showing \"processing data ...\"\" before pill is set\n\t\t\t\tif (self.dom.loadingDiv && self.dom.svg) {\n\t\t\t\t\tself.dom.loadingDiv.selectAll('*').remove()\n\t\t\t\t\tself.dom.loadingDiv.html('').style('display', '').style('position', 'relative').style('left', '45%')\n\t\t\t\t\tself.dom.loadingDiv.html('Processing data ...')\n\t\t\t\t\tself.dom.svg.style('opacity', 0.1).style('pointer-events', 'none')\n\t\t\t\t}\n\t\t\t\t// data is object with only one needed attribute: q, never is null\n\t\t\t\tif (tw && !tw.q) throw 'data.q{} missing from pill callback'\n\t\t\t\tif (tw?.term && isNumericTerm(tw.term)) {\n\t\t\t\t\t// any numeric term should be discrete when used as divideBy term\n\t\t\t\t\t// tw is missing when dividedBy term deleted\n\t\t\t\t\ttw.q = { ...tw.q, mode: 'discrete' }\n\t\t\t\t}\n\t\t\t\tif (tw) await fillTermWrapper(tw, self.app.vocabApi)\n\t\t\t\tawait pill.main(tw ? tw : { term: null, q: null })\n\t\t\t\tbox.datum({ tw })\n\t\t\t\tself.app.dispatch({\n\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\tid: self.id,\n\t\t\t\t\tconfig: {\n\t\t\t\t\t\tdivideBy: tw,\n\t\t\t\t\t\tlegendValueFilter: self.mayRemoveTvsEntry(self.config.divideBy)\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\t\t})\n\t\tconst arg = {\n\t\t\tterm: self.config.divideBy.term,\n\t\t\tq: self.config.divideBy.q\n\t\t}\n\t\tif (self.config.divideBy.$id) arg.$id = self.config.divideBy.$id\n\t\tpill.main(arg)\n\t}\n\n\tself.adjustSvgDimensions = async function (prevTranspose) {\n\t\tconst s = self.settings.matrix\n\t\tconst hc = self.settings.hierCluster || {}\n\t\tconst l = self.layout\n\t\tconst hcHeight = !hc.yDendrogramHeight ? 0 : hc.yDendrogramHeight + (l.top.display === 'none' ? 0 : 10)\n\t\tconst hcWidth = hc.xDendrogramHeight || 0\n\t\tconst d = self.dimensions\n\t\tconst duration = self.dom.svg.attr('width') ? s.duration : 0\n\n\t\t// wait for labels to render; when transposing, must wait for\n\t\t// the label rotation to end before measuring the label height and width\n\t\tawait sleep(prevTranspose == s.transpose ? duration : s.duration)\n\n\t\t// these are the label boxes\n\t\tconst topBox = l.top.box.node().getBBox()\n\t\tconst btmBox = l.btm.box.node().getBBox()\n\t\tconst leftBox = l.left.box.node().getBBox()\n\t\tconst rtBox = l.right.box.node().getBBox()\n\t\tconst legendBox = self.dom.legendG.node().getBBox()\n\t\tconst seriesBox = self.dom.seriesesG.node().getBBox()\n\n\t\td.extraWidth = leftBox.width + rtBox.width + s.margin.left + s.margin.right + s.rowlabelgap * 2\n\t\td.extraHeight = topBox.height + btmBox.height + s.margin.top + s.margin.bottom + s.collabelgap * 2\n\t\td.svgw = d.mainw + d.extraWidth + hcWidth\n\t\td.svgh = d.mainh + d.extraHeight + legendBox.height + 20 + s.scrollHeight + hcHeight\n\t\tself.dom.svg\n\t\t\t//.transition()\n\t\t\t//.duration(duration)\n\t\t\t.attr('width', d.svgw)\n\t\t\t.attr('height', d.svgh)\n\n\t\t//calculate the max gene label\n\t\tlet maxLabelWidth = self.type == 'hierCluster' ? 0 : leftBox.width,\n\t\t\tmaxLabelNumChars = 0\n\t\tif (hc.xDendrogramHeight) {\n\t\t\tself.dom.termLabelG.selectAll('.sjpp-matrix-label').each(function (d) {\n\t\t\t\tif (d.grp.type !== 'hierCluster') return\n\t\t\t\t// TODO: may enable this optimization to only detect the label box width\n\t\t\t\t//       if the text length difference is likely to affect the width\n\t\t\t\t//       DOM measurements like getBBox() may affect performance if there are lots of labels\n\t\t\t\t// if (d.label.length < maxLabelNumChars - 10) return\n\t\t\t\tconst box = this.getBBox()\n\t\t\t\tif (box.width > maxLabelWidth) {\n\t\t\t\t\tmaxLabelWidth = box.width\n\t\t\t\t\tmaxLabelNumChars = d.label.length\n\t\t\t\t}\n\t\t\t})\n\t\t}\n\n\t\t// note: two leftBox.width terms cancels to zero\n\t\tconst x = -l.left.offset + hcWidth + maxLabelWidth\n\t\t// with hierCluster:\n\t\t// in case the term dendrograms + max term label width is less than the leftBox.width of all row labels,\n\t\t// then the mainG and top/left dendrograms must be offset have an additional offset based on the difference\n\t\tconst xAdjust = !hc.xDendrogramHeight ? 0 : Math.max(leftBox.width - (hc.xDendrogramHeight + maxLabelWidth), 0)\n\t\tconst y = (l.top.display == 'none' ? 0 : topBox.height) - l.top.offset + hcHeight\n\t\tself.dom.mainG\n\t\t\t//.transition()\n\t\t\t//.duration(duration)\n\t\t\t.attr('transform', `translate(${x + xAdjust},${y})`)\n\n\t\tself.dom.clipRect\n\t\t\t// the cliprect has to be moved upwards, plus increased height to that adjustment value,\n\t\t\t// in order to display all characters of every column/group label\n\t\t\t.attr('y', -y)\n\t\t\t// add 500 so that the column labels are not clipped\n\t\t\t.attr('height', d.mainh + 500 + y)\n\n\t\t// this position is based on layout.btm.attr.boxTransform, plus box height and margins\n\t\tconst legendX = d.xOffset + (s.transpose ? 20 : 0)\n\t\tconst legendY = d.yOffset + d.mainh + s.collabelgap + (l.btm.display == 'none' ? 0 : btmBox.height) + 20\n\n\t\tself.dom.legendG\n\t\t\t//.transition()\n\t\t\t//.duration(duration)\n\t\t\t.attr('transform', `translate(${legendX},${legendY})`)\n\n\t\tif (hc.xDendrogramHeight) {\n\t\t\tconst dendroX = maxLabelWidth + xAdjust - l.left.offset + d.xOffset - d.dx / 2\n\t\t\tself.dom.hcClipRect\n\t\t\t\t.attr('x', dendroX + hcWidth + d.dx / 2)\n\t\t\t\t.attr('y', 0)\n\t\t\t\t.attr('width', d.mainw + 3)\n\t\t\t\t// add 500 so that the column labels are not clipped\n\t\t\t\t.attr('height', d.mainh + hc.yDendrogramHeight + 500)\n\n\t\t\t// for easy reference when scrolling interactively\n\t\t\tself.topDendroX = dendroX + d.seriesXoffset\n\t\t\tself.dom.topDendrogram.attr('transform', `translate(${self.topDendroX}, 0)`)\n\t\t\tconst y = l.top.display == 'none' ? 0 : topBox.height + s.collabelgap\n\t\t\tself.dom.leftDendrogram.attr('transform', `translate(${dendroX - maxLabelWidth - 10}, ${y})`)\n\t\t}\n\t}\n}\n\nfunction getRectFill(d) {\n\tif (d.fill) return d.fill\n\t/*** TODO: class should be for every values entry, as applicable ***/\n\tconst cls = d.class || (Array.isArray(d.values) && d.values[0].class)\n\tif (!cls) console.log\n\treturn cls ? mclass[cls].color : '#555'\n}\n\nfunction sleep(ms) {\n\treturn new Promise(resolve => setTimeout(resolve, ms))\n}\n"],
+  "mappings": ";;;;;;;;;;;;AAIO,SAAS,aAAa,MAAM;AAClC,OAAK,SAAS,WAAY;AACzB,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,IAAI,KAAK;AACf,UAAM,IAAI,KAAK;AACf,UAAM,WAAW,KAAK,IAAI,IAAI,KAAK,OAAO,IAAI,EAAE,WAAW;AAE3D,SAAK,IAAI,SACP,KAAK,KAAK,EAAE,UAAU,CAAC,EACvB,KAAK,KAAK,CAAC,EACX,KAAK,SAAS,EAAE,QAAQ,CAAC,EAEzB,KAAK,UAAU,EAAE,QAAQ,GAAG;AAO9B,SAAK,eAAe,GAAG,GAAG,GAAG,QAAQ;AACrC,SAAK,aAAa,GAAG,GAAG,GAAG,QAAQ;AACnC,SAAK,oBAAoB,GAAG,GAAG,GAAG,QAAQ;AAE1C,SAAK,IAAI,QAAQ,KAAK,SAAS,EAAE,EAAE,EAAE,KAAK,UAAU,EAAE,KAAK,EAAE,MAAM,UAAU,EAAE,UAAU;AAEzF,SAAK,IAAI,QAAQ,KAAK,SAAS,EAAE,WAAW,EAAE,KAAK,UAAU,EAAE,IAAI,EAAE,MAAM,UAAU,EAAE,UAAU;AAAA,EAClG;AAEA,OAAK,iBAAiB,SAAU,GAAG,GAAG,GAAG,UAAU;AAClD,QAAI,KAAK,iBAAiB,EAAE,WAAW;AACtC,WAAK,IAAI,UAAU,UAAU,GAAG,EAAE,OAAO;AAAA,IAC1C;AACA,QAAI,EAAE,WAAW;AAChB,YAAM,KAAK,KAAK,IAAI,UAAU,UAAU,GAAG;AAC3C,YAAM;AAAA;AAAA,QAA6B,KAAK,IAAI,UAAU,OAAO,GAAG,EAAE,MAAM,KAAK,QAAQ;AAAA;AACrF,WAAK,aAAa,KAAK,UAAU,GAAG,GAAG,GAAG,IAAI,QAAQ;AAAA,IACvD,OAAO;AACN,WAAK,IAAI,UAGP,KAAK,aAAa,aAAa,EAAE,UAAU,EAAE,aAAa,IAAI,EAAE,OAAO,GAAG;AAE5E,YAAM,KAAK,KAAK,IAAI,UAAU,UAAU,qBAAqB,EAAE,KAAK,KAAK,UAAU,YAAU,OAAO,GAAG,GAAG;AAC1G,SAAG,KAAK,EAAE,OAAO;AACjB,SAAG,KAAK,KAAK,YAAY;AACzB,SAAG,MAAM,EAAE,OAAO,GAAG,EAAE,KAAK,SAAS,oBAAoB,EAAE,MAAM,WAAW,IAAK,EAAE,KAAK,KAAK,YAAY;AAEzG,WAAK,SAAS;AAAA,IACf;AACA,SAAK,gBAAgB,EAAE;AAAA,EACxB;AAEA,OAAK,eAAe,eAAgB,QAAQ;AAC3C,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,IAAI,KAAK;AACf,UAAM,IAAI,eAAO,IAAI;AACrB,UAAM,WAAW,EAAE,KAAK,WAAW,IAAI,EAAE,WAAW;AAEpD,MAEE,KAAK,aAAa,aAAa,OAAO,CAAC,IAAI,OAAO,CAAC,GAAG,EACtD,MAAM,WAAW,CAAC;AACpB,UAAM,OAAO,OAAO,MAAM,OAAO,MAAM,SAAS,CAAC;AACjD,UAAM,SAAS,OAAO,IAAI,MAAM,IAAI,EAAE;AAEtC,UAAM,QAAQ,EACZ,UAAU,MAAM,EAChB,KAAK,OAAO,OAAO,UAAQ,KAAK,SAAS,OAAO,KAAK,GAAG,MAAM,OAAO,KAAK,UAAU;AACtF,UAAM,KAAK,EAAE,OAAO;AACpB,UAAM,KAAK,KAAK,UAAU;AAC1B,UAAM,MAAM,EAAE,OAAO,MAAM,EAAE,KAAK,KAAK,UAAU;AAAA,EAClD;AAEA,OAAK,eAAe,eAAgB,UAAU,GAAG,GAAG,GAAG,IAAI,UAAU;AACpE,UAAM,MAAM,OAAO,oBAAoB,IAAI,IAAI,OAAO;AAEtD,MAAE,UAAU,GAAG,EAAE,OAAO;AACxB,UAAM,QAAQ,EAAE;AAChB,UAAM,SAAS,KAAK,WAAW;AAC/B,UAAM,SAAS,OAAO,kBACnB,IAAI,gBAAgB,QAAQ,KAAK,SAAS,GAAG;AAAA;AAAA,MAE7C,KAAK,IAAI,OACR,OAAO,QAAQ,EACf,KAAK,SAAS,MAAM,KAAK,EACzB,KAAK,UAAU,MAAM,MAAM,EAC3B,MAAM,WAAW,CAAC,EAClB,KAAK;AAAA;AACT,UAAM,MAAM,OAAO,WAAW,IAAI;AAClC,QAAI,wBAAwB;AAC5B,QAAI,wBAAwB;AAG5B,QAAI,MAAM,KAAK,GAAG;AAClB,eAAW,UAAU,UAAU;AAC9B,iBAAW,QAAQ,OAAO,OAAO;AAChC,aAAK,qBAAqB,KAAK,MAAM,QAAQ,GAAG,GAAG,OAAO,CAAC;AAAA,MAC5D;AAAA,IACD;AAEA,QAAI,OAAO,iBAAiB;AAC3B,YAAM,SAAS,IAAI,WAAW;AAC9B,aAAO;AAAA,QACN;AAAA,QACA,MAAM;AAGL,cAAI,OAAO;AACX,eAAK,IAAI,UAGP,KAAK,aAAa,aAAa,EAAE,UAAU,EAAE,aAAa,IAAI,EAAE,OAAO,GAAG;AAE5E,YAAE,UAAU,OAAO,EAAE,OAAO;AAC5B,YAAE,OAAO,OAAO,EACd,KAAK,cAAc,OAAO,MAAM,EAChC,KAAK,KAAK,EAAE,IAAI,EAChB,KAAK,SAAS,KAAK,EACnB,KAAK,UAAU,MAAM;AAAA,QACxB;AAAA,QACA;AAAA,MACD;AACA,YAAM,OAAO,MAAM,OAAO,cAAc,EAAE,SAAS,EAAE,CAAC;AACtD,YAAM,UAAU,OAAO,cAAc,IAAI;AAAA,IAC1C,OAAO;AACN,UAAI,OAAO;AACX,WAAK,IAAI,UAGP,KAAK,aAAa,aAAa,EAAE,UAAU,EAAE,aAAa,IAAI,EAAE,OAAO,GAAG;AAE5E,YAAM,UAAU,OAAO,UAAU;AACjC,YAAM,QAAQ,OAAO,mBAAmB,OAAO;AAC/C,QAAE,OAAO,OAAO,EAAE,KAAK,SAAS,KAAK,EAAE,KAAK,UAAU,MAAM,EAAE,KAAK,cAAc,OAAO;AACxF,UAAI,CAAC,OAAO,gBAAiB,QAAO,OAAO;AAAA,IAC5C;AAEA,SAAK,SAAS;AAAA,EACf;AAEA,OAAK,uBAAuB,SAAU,KAAK,MAAM,QAAQ,GAAG,GAAG,IAAI;AAClE,QAAI,CAAC,KAAK;AACT,WAAK,OAAO,KAAK,OAAO,KAAK,qBAAqB,KAAK,mBAAmB,KAAK,GAAG,EAAE,KAAK,GAAG,IAAI,YAAY,IAAI;AACjH,UAAM,IAAI,KAAK,IAAI,KAAK,IAAI,EAAE,OAAO;AACrC,UAAM,IAAI,KAAK,KAAK,KAAK,IAAI,KAAK,KAAK;AACvC,UAAM,QAAQ,EAAE,mBAAmB,KAAK,IAAI,KAAK,SAAS,EAAE,MAAM,EAAE,GAAG,IAAI,KAAK,SAAS,EAAE;AAC3F,UAAM,SAAS,YAAY,OAAO,KAAK,SAAS,EAAE;AAClD,QAAI,YAAY,KAAK;AACrB,QAAI,SAAS,GAAG,GAAG,OAAO,MAAM;AAEhC,UAAM,cAAc,KAAK,IAAI,OAAO,MAAM,IAAI;AAC9C,QAAI,KAAK,QAAQ;AAEhB,UAAI,YAAY;AAChB,UAAI,cAAc;AAClB,UAAI,WAAW,GAAG,GAAG,OAAO,MAAM;AAAA,IACnC;AAAA,EACD;AAEA,OAAK,aAAa,SAAU,MAAM;AACjC,QAAI,CAAC,KAAK;AACT,WAAK,OAAO,KAAK,OAAO,KAAK,qBAAqB,KAAK,mBAAmB,KAAK,GAAG,EAAE,KAAK,GAAG,IAAI,YAAY,IAAI;AACjH,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,OAAO,eAAO,IAAI,EAMtB,KAAK,KAAK,KAAK,KAAK,CAAC,EACrB,KAAK,KAAK,KAAK,KAAK,CAAC,EACrB,KAAK,SAAS,KAAK,SAAS,KAAK,WAAW,IAAI,EAChD,KAAK,UAAU,YAAY,OAAO,KAAK,IAAI,GAAG,KAAK,MAAM,IAAI,EAAE,IAAI,EACnE,KAAK,mBAAmB,YAAY,EACpC,KAAK,QAAQ,KAAK,IAAI;AACxB,QAAI,KAAK,QAAQ;AAChB,WAAK,KAAK,UAAU,OAAO,EAAE,KAAK,gBAAgB,GAAG;AAAA,IACtD;AAAA,EACD;AAEA,OAAK,eAAe,SAAU,GAAG,GAAG,GAAG,UAAU;AAChD,eAAW,aAAa,CAAC,OAAO,OAAO,QAAQ,OAAO,GAAG;AAaxD,UAASA,eAAT,SAAqB,KAAK;AACzB,cAAM,IAAI,eAAO,IAAI;AAErB,UAEE,KAAK,aAAa,KAAK,KAAK,eAAe;AAE7C,YAAI,CAAC,EAAE,OAAO,aAAa,EAAE,KAAK,EAAG,GAAE,OAAO,MAAM;AACpD,cAAM,eAAe,CAAC,KAAK,WAAW,IAAI,KAAK,SAAS,iBAAiB,IAAI,IAAI,GAAG,QAAQ;AAC5F,cAAM,YAAY,KAAK,MAAM,GAAG;AAChC,cAAM,OAAO,EAAE,OAAO,aAAa,EAAE,KAAK,QAAQ,MAAM;AAExD,YAAI;AACJ,cAAM,qBAAqB,KAAK,OAAO,SAAS,OAAO;AACvD,cAAM,iBAAiB,mBAAmB,IAAI,IAAI,GAAG,GAAG;AACxD,YAAI,kBAAkB,EAAE,KAAM,yBAAwB,iBAAiB,EAAE,QAAQ;AAEjF,aAGE;AAAA,UACA;AAAA,UACA,IAAI,KAAK,SAAS,iBAAiB,EAAE,cAAc,IAChD,SACA,KAAK,KAAK,WAAW,KAAK,cAAc,cACxC,SACA;AAAA,QACJ,EACC,KAAK,aAAa,IAAI,KAAK,SAAS,gBAAgB,KAAK,IAAI,GAAG,EAAE,cAAc,CAAC,IAAI,KAAK,KAAK,QAAQ,EACvG,KAAK,eAAe,KAAK,KAAK,WAAW,EACzC;AAAA,UACA;AAAA,UACA,KAAK,KAAK,kBAAkB,uBAAuB,gBAAgB,oBAAoB,MAAM;AAAA,QAC9F,EACC,KAAK,UAAU,SAAS,EACxB,KAAK,KAAK,KAAK,QAAQ,OAAO,KAAK,KAAK,QAAQ,UAAU,eAAe,KAAK,EAAE;AAElF,YAAI,CAAC,MAAM,QAAQ,SAAS,GAAG;AAC9B,eAAK,KAAK,SAAS;AACnB,eAAK;AAAA,YACJ;AAAA,YACA,IAAI,KAAK,SAAS,iBAAiB,IAAI,IAAI,GAAG,QAAQ,eACnD,KACA,IAAI,KAAK,SAAS,gBAClB,MAAM,EAAE,cACR;AAAA,UACJ;AACA,cAAI,IAAI,KAAK,SAAS,iBAAiB,IAAI,IAAI,GAAG,QAAQ,aAAc,MAAK,KAAK,KAAK,GAAG;AAAA,QAC3F,OAAO;AAGN,eAAK,KAAK,EAAE;AAEZ,gBAAM,QAAQ,KAAK,UAAU,OAAO,EAAE,KAAK,SAAS;AAGpD,gBACE,MAAM,EACN,OAAO,OAAO,EACd,KAAK,SAASC,YAAW,EACzB,KAAK,MAAMC,WAAU,EACrB,KAAK,aAAaC,iBAAgB,EAClC,KAAKC,aAAY;AAAA,QACpB;AAEA,aACE,GAAG,aAAa,cAAc,cAAc,MAAM,KAAK,KAAK,WAAW,GAAG,IAAI,IAAI,EAClF,GAAG,YAAY,cAAc,cAAc,MAAM,KAAK,KAAK,WAAW,CAAC,IAAI,IAAI;AAEjF,cAAM,UAAU,EAAE,OAAO,wBAAwB,EAAE,KAAK,KAAK;AAC7D,YAAI,gBAAgB,WAAW;AAC9B,cAAI,CAAC,SAAS;AACb,cAAE,OAAO,GAAG,EAAE,KAAK,SAAS,uBAAuB,EAAE,KAAK,mBAAmB,YAAY;AAAA,UAC1F;AACA,gBAAM,QAAQ,EAAE,OAAO,wBAAwB;AAC/C,gBAAM,UAAU,GAAG,EAAE,OAAO;AAC5B,gBAAM,SAAS,CAAC,IAAI,OAAO,QAAQ,IAAI,OAAO,MAAM;AACpD,cAAI,EAAE,UAAW,QAAO,QAAQ;AAEhC,gBAAMC,sBAAqB,KAAK,OAAO,SAAS,OAAO;AACvD,gBAAM,aAAaA,oBAAmB,IAAI,GAAG,GAAG;AAChD,gBAAM,IAAI,CAAC,EAAE,YAAY,IAAI,WAAW,aAAa,IAAI,IAAI;AAC7D,gBAAM,IAAI,CAAC,EAAE,YAAY,WAAW,aAAa,IAAI,IAAI,cAAc;AACvE,gBACE,KAAK,mBAAmB,YAAY,EACpC,KAAK,aAAa,aAAa,CAAC,IAAI,CAAC,GAAG,EACxC,KAAK,KAAK,KAAK,QAAQ,IAAI,OAAO,KAAK,OAAO,IAAI,OAAO,UAAU,CAAC,EAAE,WAAW,IAAI,OAAO,UAAU,CAAC;AAAA,QAC1G,WAAW,SAAS;AACnB,YAAE,OAAO,wBAAwB,EAAE,OAAO;AAAA,QAC3C;AAAA,MACD,GAESJ,eAAT,SAAqBK,IAAG;AACvB,eAAOA,GAAE;AAAA,MACV,GACSJ,cAAT,SAAoBI,IAAG;AACtB,eAAOA,GAAE;AAAA,MACV,GACSH,oBAAT,SAA0BG,IAAG;AAC5B,eAAOA,GAAE,YAAY,KAAK,KAAK;AAAA,MAChC,GACSF,gBAAT,SAAsBE,IAAG;AACxB,eAAOA,GAAE;AAAA,MACV;AAvGS,wBAAAN,cA4FA,cAAAC,cAGA,aAAAC,aAGA,mBAAAC,mBAGA,eAAAC;AAjHT,YAAM,OAAO,EAAE,SAAS;AACxB,WAAK,IACH,MAAM,WAAW,KAAK,WAAW,EAAE,EAGnC,KAAK,aAAa,KAAK,KAAK,YAAY;AAE1C,YAAM,SAAS,KAAK,IAAI,UAAU,oBAAoB,EAAE,KAAK,KAAK,MAAM,KAAK,GAAG;AAChF,aAAO,KAAK,EAAE,OAAO;AACrB,aAAO,KAAKJ,YAAW;AACvB,aAAO,MAAM,EAAE,OAAO,GAAG,EAAE,KAAK,SAAS,mBAAmB,EAAE,KAAKA,YAAW;AAAA,IA0G/E;AAAA,EACD;AAEA,OAAK,qBAAqB,CAAC,KAAK,aAAa;AAC5C,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,IAAI,KAAK;AACf,QAAI,cAAc,MAAM,EAAE;AAC1B,UAAM,IAAI,IAAI,WAAW,EAAE,YAAY,IAAI,aAAa,EAAE,KAAK,IAAI,cAAc,IAAI;AACrF,UAAM,IAAI;AACV,WAAO,aAAa,IAAI,EAAE,aAAa,IAAI,CAAC;AAAA,EAC7C;AAEA,OAAK,wBAAwB,CAAC,KAAK,aAAa;AAC/C,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,IAAI,KAAK;AACf,UAAM,OAAO,IAAI,gBAAgB,IAAI,IAAI,KAAK;AAC9C,UAAM,IACL,IAAI,WAAW,EAAE,YACjB,IAAI,oBAAoB,EAAE,KACzB,MAAM,EAAE,KAAM,IACf,EAAE,mBAAmB,IACrB,IAAI;AACL,WAAO,aAAa,IAAI,EAAE,aAAa;AAAA,EACxC;AAEA,OAAK,qBAAqB,CAAC,KAAK,aAAa;AAC5C,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,IAAI,KAAK;AACf,UAAM,IAAI;AACV,QAAI,cAAc,OAAO,IAAI,IAAI,QAAQ,gBAAgB,EAAE,cAAc,EAAE;AAC3E,UAAM,IAAI,IAAI,WAAW,EAAE,YAAY,IAAI,aAAa,EAAE,KAAK,IAAI,cAAc,IAAI;AACrF,WAAO,aAAa,CAAC,IAAI,CAAC;AAAA,EAC3B;AAEA,OAAK,wBAAwB,CAAC,KAAK,aAAa;AAC/C,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,IAAI,KAAK;AACf,UAAM,OAAO,IAAI,gBAAgB,IAAI,IAAI,KAAK;AAC9C,UAAM,IAAI,IAAI,IAAI,GAAG,QAAQ,eAAe,KAAK;AACjD,UAAM,IACL,IAAI,WAAW,EAAE,YACjB,IAAI,oBAAoB,EAAE,KACzB,MAAM,EAAE,KAAM,IACf,EAAE,mBAAmB,IACrB,IAAI;AACL,WAAO,aAAa,CAAC,IAAI,CAAC;AAAA,EAC3B;AAEA,OAAK,oBAAoB,CAAC,KAAK,aAAa;AAC3C,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,IAAI,KAAK;AACf,UAAM,IAAI;AACV,UAAM,IAAI,IAAI,WAAW,EAAE,YAAY,IAAI,aAAa,EAAE,KAAK,MAAM,EAAE,OAAO,IAAI;AAClF,WAAO,aAAa,CAAC,IAAI,CAAC;AAAA,EAC3B;AAEA,OAAK,sBAAsB,OAAO,GAAG,GAAG,MAAM;AAC7C,SAAK,IAAI,MAAM,UAAU,8BAA8B,EAAE,OAAO;AAChE,QAAI,CAAC,KAAK,OAAO,SAAU;AAC3B,UAAM,OAAO,KAAK,OAAO,UAAU,KAAK,QAAQ;AAChD,UAAM,OAAO,KAAK,UAAU,EAAE,mBAAmB,OAAO,KAAK,MAAM,GAAG,EAAE,gBAAgB,IAAI;AAC5F,UAAM,QAAQ,CAAC,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC,EAAE,KAAK,EAAE,MAAM;AACjE,UAAM,MAAM,MAAM,KAAK,CAAAM,OAAK,CAACA,GAAE,OAAO,GAAG;AACzC,UAAM,KAAK,EAAE,eAAe,QAAQ,EAAE,QAAQ,EAAE,mBAAmB,CAAC,EAAE,oBAAoB;AAC1F,UAAM,SAAS,EAAE,eAAe,SAAS,QAAQ;AACjD,UAAM,KAAK,EAAE;AAEb,UAAM,QAAQ,IAAI,OAAO,GAAG,EAAE,KAAK,SAAS,6BAA6B,EAAE,KAAK,aAAa,gBAAgB,CAAC,GAAG;AAEjH,UACE,OAAO,MAAM,EACb,KAAK,eAAe,MAAM,EAC1B,KAAK,cAAc,QAAQ,EAC3B,KAAK,KAAK,GAAG,EACb,KAAK,GAAG,GAAG,OAAO,aAAa;AAEjC,UAAM,IAAI,IACR,MAAM,EAAE,IAAI,KAAK,OAAO,SAAS,CAAC,EAClC,OAAO,GAAG,EACV,KAAK,SAAS,6BAA6B,EAC3C,KAAK,aAAa,gBAAgB,CAAC,GAAG,EACtC,GAAG,SAAS,CAAC,OAAOA,OAAM;AAC1B,WAAK,SAAS,OAAO,SAAS,KAAK,CAAC;AAAA,IACrC,CAAC;AAEF,UAAM,WAAW,EAAE,OAAO,MAAM,EAAE,KAAK,eAAe,MAAM,EAAE,KAAK,eAAe,GAAG,EAAE,KAAK,IAAI;AAEhG,MAAE,OAAO,OAAO,EAAE,KAAK,GAAG,GAAG,OAAO,uDAAuD;AAE3F,UAAM,oBAAoB,CAAC;AAC3B,UAAM,SAAS,cAAc,KAAK,OAAO,SAAS,IAAI,IAAI,WAAW;AACrE,QACC,KAAK,OAAO,kBAAkB,KAAK;AAAA,MAClC,CAAAC,OAAKA,GAAE,iBAAiB,KAAK,OAAO,SAAS,KAAK,MAAMA,GAAE,iBAAiB,KAAK,OAAO,SAAS,KAAK;AAAA,IACtG,GAAG,IAAI,MAAM,GAAG,QACf;AACD,wBAAkB,KAAK,EAAE,OAAO,iBAAiB,GAAG,OAAO,IAAI,UAAU,KAAK,wBAAwB,CAAC;AAAA,IACxG;AAEA,UAAM,OAAO,MAAM,gBAAgB;AAAA,MAClC,aAAa;AAAA;AAAA,MAGb;AAAA;AAAA,MACA,UAAU,KAAK,IAAI;AAAA,MACnB,OAAO,KAAK,MAAM;AAAA;AAAA,MAElB,QAAQ;AAAA,MACR,OAAO,KAAK,KAAK;AAAA,MACjB,SAAS,EAAE,QAAQ,SAAS;AAAA,MAC5B,eAAe,MAAM;AACpB,cAAM,mBAAmB,KAAK,UAC5B,OAAO,OAAK,EAAE,GAAG,KAAK,SAAS,aAAa,EAC5C;AAAA,UAAI,OACJ,EAAE,GAAG,KAAK,MAAM,GAAG,EAAE,GAAG,KAAK,GAAG,IAAI,EAAE,GAAG,KAAK,KAAK,IAAI,EAAE,GAAG,KAAK,IAAI,KAAK,EAAE,GAAG,KAAK,QAAQ,EAAE,GAAG,KAAK;AAAA,QACvG;AACD,YAAI,iBAAiB,OAAQ,QAAO,EAAE,iBAAiB;AACvD,eAAO,CAAC;AAAA,MACT;AAAA,MACA,UAAU,OAAM,OAAM;AAErB,YAAI,KAAK,IAAI,cAAc,KAAK,IAAI,KAAK;AACxC,eAAK,IAAI,WAAW,UAAU,GAAG,EAAE,OAAO;AAC1C,eAAK,IAAI,WAAW,KAAK,EAAE,EAAE,MAAM,WAAW,EAAE,EAAE,MAAM,YAAY,UAAU,EAAE,MAAM,QAAQ,KAAK;AACnG,eAAK,IAAI,WAAW,KAAK,qBAAqB;AAC9C,eAAK,IAAI,IAAI,MAAM,WAAW,GAAG,EAAE,MAAM,kBAAkB,MAAM;AAAA,QAClE;AAEA,YAAI,MAAM,CAAC,GAAG,EAAG,OAAM;AACvB,YAAI,IAAI,QAAQ,cAAc,GAAG,IAAI,GAAG;AAGvC,aAAG,IAAI,EAAE,GAAG,GAAG,GAAG,MAAM,WAAW;AAAA,QACpC;AACA,YAAI,GAAI,OAAM,gBAAgB,IAAI,KAAK,IAAI,QAAQ;AACnD,cAAM,KAAK,KAAK,KAAK,KAAK,EAAE,MAAM,MAAM,GAAG,KAAK,CAAC;AACjD,YAAI,MAAM,EAAE,GAAG,CAAC;AAChB,aAAK,IAAI,SAAS;AAAA,UACjB,MAAM;AAAA,UACN,IAAI,KAAK;AAAA,UACT,QAAQ;AAAA,YACP,UAAU;AAAA,YACV,mBAAmB,KAAK,kBAAkB,KAAK,OAAO,QAAQ;AAAA,UAC/D;AAAA,QACD,CAAC;AAAA,MACF;AAAA,IACD,CAAC;AACD,UAAM,MAAM;AAAA,MACX,MAAM,KAAK,OAAO,SAAS;AAAA,MAC3B,GAAG,KAAK,OAAO,SAAS;AAAA,IACzB;AACA,QAAI,KAAK,OAAO,SAAS,IAAK,KAAI,MAAM,KAAK,OAAO,SAAS;AAC7D,SAAK,KAAK,GAAG;AAAA,EACd;AAEA,OAAK,sBAAsB,eAAgB,eAAe;AACzD,UAAM,IAAI,KAAK,SAAS;AACxB,UAAM,KAAK,KAAK,SAAS,eAAe,CAAC;AACzC,UAAM,IAAI,KAAK;AACf,UAAM,WAAW,CAAC,GAAG,oBAAoB,IAAI,GAAG,qBAAqB,EAAE,IAAI,YAAY,SAAS,IAAI;AACpG,UAAM,UAAU,GAAG,qBAAqB;AACxC,UAAM,IAAI,KAAK;AACf,UAAM,WAAW,KAAK,IAAI,IAAI,KAAK,OAAO,IAAI,EAAE,WAAW;AAI3D,UAAM,MAAM,iBAAiB,EAAE,YAAY,WAAW,EAAE,QAAQ;AAGhE,UAAM,SAAS,EAAE,IAAI,IAAI,KAAK,EAAE,QAAQ;AACxC,UAAM,SAAS,EAAE,IAAI,IAAI,KAAK,EAAE,QAAQ;AACxC,UAAM,UAAU,EAAE,KAAK,IAAI,KAAK,EAAE,QAAQ;AAC1C,UAAM,QAAQ,EAAE,MAAM,IAAI,KAAK,EAAE,QAAQ;AACzC,UAAM,YAAY,KAAK,IAAI,QAAQ,KAAK,EAAE,QAAQ;AAClD,UAAM,YAAY,KAAK,IAAI,UAAU,KAAK,EAAE,QAAQ;AAEpD,MAAE,aAAa,QAAQ,QAAQ,MAAM,QAAQ,EAAE,OAAO,OAAO,EAAE,OAAO,QAAQ,EAAE,cAAc;AAC9F,MAAE,cAAc,OAAO,SAAS,OAAO,SAAS,EAAE,OAAO,MAAM,EAAE,OAAO,SAAS,EAAE,cAAc;AACjG,MAAE,OAAO,EAAE,QAAQ,EAAE,aAAa;AAClC,MAAE,OAAO,EAAE,QAAQ,EAAE,cAAc,UAAU,SAAS,KAAK,EAAE,eAAe;AAC5E,SAAK,IAAI,IAGP,KAAK,SAAS,EAAE,IAAI,EACpB,KAAK,UAAU,EAAE,IAAI;AAGvB,QAAI,gBAAgB,KAAK,QAAQ,gBAAgB,IAAI,QAAQ,OAC5D,mBAAmB;AACpB,QAAI,GAAG,mBAAmB;AACzB,WAAK,IAAI,WAAW,UAAU,oBAAoB,EAAE,KAAK,SAAUD,IAAG;AACrE,YAAIA,GAAE,IAAI,SAAS,cAAe;AAKlC,cAAM,MAAM,KAAK,QAAQ;AACzB,YAAI,IAAI,QAAQ,eAAe;AAC9B,0BAAgB,IAAI;AACpB,6BAAmBA,GAAE,MAAM;AAAA,QAC5B;AAAA,MACD,CAAC;AAAA,IACF;AAGA,UAAM,IAAI,CAAC,EAAE,KAAK,SAAS,UAAU;AAIrC,UAAM,UAAU,CAAC,GAAG,oBAAoB,IAAI,KAAK,IAAI,QAAQ,SAAS,GAAG,oBAAoB,gBAAgB,CAAC;AAC9G,UAAM,KAAK,EAAE,IAAI,WAAW,SAAS,IAAI,OAAO,UAAU,EAAE,IAAI,SAAS;AACzE,SAAK,IAAI,MAGP,KAAK,aAAa,aAAa,IAAI,OAAO,IAAI,CAAC,GAAG;AAEpD,SAAK,IAAI,SAGP,KAAK,KAAK,CAAC,CAAC,EAEZ,KAAK,UAAU,EAAE,QAAQ,MAAM,CAAC;AAGlC,UAAM,UAAU,EAAE,WAAW,EAAE,YAAY,KAAK;AAChD,UAAM,UAAU,EAAE,UAAU,EAAE,QAAQ,EAAE,eAAe,EAAE,IAAI,WAAW,SAAS,IAAI,OAAO,UAAU;AAEtG,SAAK,IAAI,QAGP,KAAK,aAAa,aAAa,OAAO,IAAI,OAAO,GAAG;AAEtD,QAAI,GAAG,mBAAmB;AACzB,YAAM,UAAU,gBAAgB,UAAU,EAAE,KAAK,SAAS,EAAE,UAAU,EAAE,KAAK;AAC7E,WAAK,IAAI,WACP,KAAK,KAAK,UAAU,UAAU,EAAE,KAAK,CAAC,EACtC,KAAK,KAAK,CAAC,EACX,KAAK,SAAS,EAAE,QAAQ,CAAC,EAEzB,KAAK,UAAU,EAAE,QAAQ,GAAG,oBAAoB,GAAG;AAGrD,WAAK,aAAa,UAAU,EAAE;AAC9B,WAAK,IAAI,cAAc,KAAK,aAAa,aAAa,KAAK,UAAU,MAAM;AAC3E,YAAME,KAAI,EAAE,IAAI,WAAW,SAAS,IAAI,OAAO,SAAS,EAAE;AAC1D,WAAK,IAAI,eAAe,KAAK,aAAa,aAAa,UAAU,gBAAgB,EAAE,KAAKA,EAAC,GAAG;AAAA,IAC7F;AAAA,EACD;AACD;AAEA,SAAS,YAAY,GAAG;AACvB,MAAI,EAAE,KAAM,QAAO,EAAE;AAErB,QAAM,MAAM,EAAE,SAAU,MAAM,QAAQ,EAAE,MAAM,KAAK,EAAE,OAAO,CAAC,EAAE;AAC/D,MAAI,CAAC,IAAK,SAAQ;AAClB,SAAO,MAAM,OAAO,GAAG,EAAE,QAAQ;AAClC;AAEA,SAAS,MAAM,IAAI;AAClB,SAAO,IAAI,QAAQ,aAAW,WAAW,SAAS,EAAE,CAAC;AACtD;",
+  "names": ["renderLabel", "getTspanCls", "getTspanDx", "getTspanFontSize", "getTspanText", "twSpecificSettings", "d", "l", "y"]
+}

package/dist/chunk-LRBNYEFI.js

@@ -0,0 +1,50 @@
+import {
+  addGeneSearchbox,
+  getSCGEunit
+} from "./chunk-NVB7MQLH.js";
+import {
+  Menu
+} from "./chunk-A6TQGNDQ.js";
+import {
+  SINGLECELL_GENE_EXPRESSION
+} from "./chunk-6ITDJ5UR.js";
+
+// termdb/handlers/singleCellGeneExpression.ts
+var SearchHandler = class {
+  init(opts) {
+    this.validateOpts(opts);
+    this.callback = opts.callback;
+    this.app = opts.app;
+    const holder = opts.holder.append("div").style("padding", "10px 0px");
+    const geneSearch = addGeneSearchbox({
+      tip: new Menu({ padding: "0px" }),
+      genome: opts.genomeObj,
+      row: holder,
+      searchOnly: "gene",
+      callback: () => this.selectGene(geneSearch.geneSymbol, opts.usecase?.specialCase?.config?.sample)
+    });
+  }
+  /**TODO: scge tw handler will validate that a sample is included. Need to resolve issue
+   * with sample info not included.*/
+  async selectGene(gene, sample) {
+    if (!gene) throw new Error("No gene selected");
+    const unit = getSCGEunit(this.app.vocabApi);
+    const name = `${gene} ${unit}`;
+    this.callback({ gene, name, type: SINGLECELL_GENE_EXPRESSION, sample });
+  }
+  validateOpts(opts) {
+    if (opts.callback == null) throw new Error("callback is required");
+    if (opts.app == null) throw new Error("app is required");
+    if (opts.holder == null) throw new Error("holder is required");
+    if (opts.genomeObj == null) throw new Error("genomeObj is required");
+    if (opts.usecase == null) throw new Error("usecase is required");
+    if (!opts.usecase?.specialCase?.config?.sample) {
+      throw new Error("usecase.specialCase.config.sample is required for singleCellGeneExpression handler");
+    }
+  }
+};
+
+export {
+  SearchHandler
+};
+//# sourceMappingURL=chunk-LRBNYEFI.js.map

package/dist/chunk-LRBNYEFI.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../termdb/handlers/singleCellGeneExpression.ts"],
+  "sourcesContent": ["import { Menu, addGeneSearchbox } from '#dom'\nimport type { AppApi } from '#rx'\nimport { SINGLECELL_GENE_EXPRESSION } from '#shared/terms.js'\nimport { getSCGEunit } from '#tw/singleCellGeneExpression'\nimport type { SearchHandlerOpts } from '../TermTypeSearch.js'\n\nexport class SearchHandler {\n\tcallback?: (arg0: { gene: string; name: string; type: string; sample: object }) => void\n\tapp?: AppApi\n\n\tinit(opts: SearchHandlerOpts) {\n\t\tthis.validateOpts(opts)\n\t\tthis.callback = opts.callback\n\t\tthis.app = opts.app\n\t\tconst holder = opts.holder.append('div').style('padding', '10px 0px')\n\t\tconst geneSearch = addGeneSearchbox({\n\t\t\ttip: new Menu({ padding: '0px' }),\n\t\t\tgenome: opts.genomeObj,\n\t\t\trow: holder,\n\t\t\tsearchOnly: 'gene',\n\t\t\tcallback: () => this.selectGene(geneSearch.geneSymbol, opts.usecase?.specialCase?.config?.sample)\n\t\t})\n\t}\n\n\t/**TODO: scge tw handler will validate that a sample is included. Need to resolve issue\n\t * with sample info not included.*/\n\tasync selectGene(gene: string | undefined, sample: any | undefined) {\n\t\tif (!gene) throw new Error('No gene selected')\n\t\tconst unit = getSCGEunit(this.app!.vocabApi)\n\t\tconst name = `${gene} ${unit}`\n\t\tthis.callback!({ gene, name, type: SINGLECELL_GENE_EXPRESSION, sample })\n\t}\n\n\tvalidateOpts(opts) {\n\t\tif (opts.callback == null) throw new Error('callback is required')\n\t\tif (opts.app == null) throw new Error('app is required')\n\t\tif (opts.holder == null) throw new Error('holder is required')\n\t\tif (opts.genomeObj == null) throw new Error('genomeObj is required')\n\t\tif (opts.usecase == null) throw new Error('usecase is required')\n\t\tif (!opts.usecase?.specialCase?.config?.sample) {\n\t\t\tthrow new Error('usecase.specialCase.config.sample is required for singleCellGeneExpression handler')\n\t\t}\n\t}\n}\n"],
+  "mappings": ";;;;;;;;;;;;AAMO,IAAM,gBAAN,MAAoB;AAAA,EAI1B,KAAK,MAAyB;AAC7B,SAAK,aAAa,IAAI;AACtB,SAAK,WAAW,KAAK;AACrB,SAAK,MAAM,KAAK;AAChB,UAAM,SAAS,KAAK,OAAO,OAAO,KAAK,EAAE,MAAM,WAAW,UAAU;AACpE,UAAM,aAAa,iBAAiB;AAAA,MACnC,KAAK,IAAI,KAAK,EAAE,SAAS,MAAM,CAAC;AAAA,MAChC,QAAQ,KAAK;AAAA,MACb,KAAK;AAAA,MACL,YAAY;AAAA,MACZ,UAAU,MAAM,KAAK,WAAW,WAAW,YAAY,KAAK,SAAS,aAAa,QAAQ,MAAM;AAAA,IACjG,CAAC;AAAA,EACF;AAAA;AAAA;AAAA,EAIA,MAAM,WAAW,MAA0B,QAAyB;AACnE,QAAI,CAAC,KAAM,OAAM,IAAI,MAAM,kBAAkB;AAC7C,UAAM,OAAO,YAAY,KAAK,IAAK,QAAQ;AAC3C,UAAM,OAAO,GAAG,IAAI,IAAI,IAAI;AAC5B,SAAK,SAAU,EAAE,MAAM,MAAM,MAAM,4BAA4B,OAAO,CAAC;AAAA,EACxE;AAAA,EAEA,aAAa,MAAM;AAClB,QAAI,KAAK,YAAY,KAAM,OAAM,IAAI,MAAM,sBAAsB;AACjE,QAAI,KAAK,OAAO,KAAM,OAAM,IAAI,MAAM,iBAAiB;AACvD,QAAI,KAAK,UAAU,KAAM,OAAM,IAAI,MAAM,oBAAoB;AAC7D,QAAI,KAAK,aAAa,KAAM,OAAM,IAAI,MAAM,uBAAuB;AACnE,QAAI,KAAK,WAAW,KAAM,OAAM,IAAI,MAAM,qBAAqB;AAC/D,QAAI,CAAC,KAAK,SAAS,aAAa,QAAQ,QAAQ;AAC/C,YAAM,IAAI,MAAM,oFAAoF;AAAA,IACrG;AAAA,EACD;AACD;",
+  "names": []
+}