@sjcrh/proteinpaint-client 2.181.0 → 2.182.0

package/dist/sunburst-HPDML45I.js

@@ -1,282 +0,0 @@
-import {
-  textlensf
-} from "./chunk-XZZLEHWC.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-CJJ6LDZM.js";
-import "./chunk-2SRMRC6L.js";
-import "./chunk-QEHUEG4X.js";
-import "./chunk-XDI4UFCZ.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-5EF5U7MX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-MVTCBVSX.js";
-import "./chunk-SEQLC4AD.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-2TIYJ3PH.js";
-import "./chunk-RIGZHHCP.js";
-import "./chunk-AAEXTQT3.js";
-import "./chunk-2UWHV2SB.js";
-import "./chunk-ZLH4PJKX.js";
-import "./chunk-TV74I3Y5.js";
-import {
-  arc_default,
-  category10_default
-} from "./chunk-IH7ILDJS.js";
-import "./chunk-LOZEKOES.js";
-import {
-  partition_default,
-  stratify_default
-} from "./chunk-TOU7EVFQ.js";
-import {
-  ordinal
-} from "./chunk-OAWQ6LOO.js";
-import "./chunk-SEEYV6P2.js";
-import {
-  select_default
-} from "./chunk-NDWTN4U5.js";
-import {
-  rgb
-} from "./chunk-OMR2DT66.js";
-import "./chunk-HFNDKYVF.js";
-
-// src/sunburst.js
-var dur1 = 500;
-var dur2 = 250;
-function sunburst_default(opts) {
-  const {
-    occurrence,
-    boxyoff,
-    boxheight,
-    boxwidth,
-    svgheight,
-    g,
-    pica,
-    cx,
-    cy,
-    nodes,
-    chartlabel,
-    click_ring,
-    click_listbutton
-  } = opts;
-  g.attr("transform", "translate(" + cx + "," + cy + ")");
-  const suncolor = ordinal(category10_default);
-  const eye = g.append("g");
-  const ring = g.append("g");
-  const sun = { g, eye, ring, pica, busy: false, boxyoff, svgheight, cx, cy };
-  const radius = Math.max(boxheight * 0.2, Math.min(boxheight * 0.42, Math.log(occurrence) * 24));
-  if (cx < radius) {
-    sun.cx = radius;
-  } else if (cx + radius > boxwidth) {
-    sun.cx = boxwidth - radius;
-  }
-  if (cy < radius) {
-    sun.cy = radius;
-  } else if (cy + radius > boxheight) {
-    sun.cy = boxheight - radius;
-  }
-  g.transition().delay(dur1 + dur2).attr("transform", "translate(" + sun.cx + "," + sun.cy + ")");
-  const root = stratify_default()(nodes);
-  root.sum((i) => i.value);
-  root.sort((a, b) => b.value - a.value);
-  partition_default().size([1, Math.pow(radius, 2)])(root);
-  eye.append("circle").attr("r", radius).attr("fill", "white").attr("fill-opacity", 0);
-  let emptyspace;
-  const arcfunc = arc_default().startAngle((d) => Math.PI * 2 * d.x0).endAngle((d) => Math.PI * 2 * d.x1).innerRadius((d) => {
-    if (!d.parent) {
-      emptyspace = Math.sqrt(d.y1) - radius / 15;
-      return emptyspace;
-    }
-    return Math.sqrt(d.y0);
-  }).outerRadius((d) => {
-    d.outradius = Math.sqrt(d.y1);
-    return d.outradius;
-  });
-  ring.selectAll().data(root.descendants()).enter().append("path").attr("d", arcfunc).attr("stroke", "white").attr("fill", (d) => {
-    if (!d.parent) {
-      return "white";
-    }
-    let key;
-    if (d.children) {
-      key = d.id;
-    } else {
-      if (!d.parent.parent) {
-        key = d.id;
-      } else {
-        key = d.parent.id;
-      }
-    }
-    const c = suncolor(key);
-    d._color = c;
-    return c;
-  }).on("mouseover", (event, d) => {
-    if (!d.parent) return;
-    if (sun.busy) return;
-    event.target.setAttribute("fill", rgb(d._color).darker(0.5).toString());
-    slicemouseover(d, sun);
-  }).on("mouseout", (event, d) => {
-    pica.g.selectAll("*").remove();
-    if (!d.parent) return;
-    event.target.setAttribute("fill", d._color);
-  }).on("click", async (event, d) => {
-    if (!click_ring) return;
-    if (sun.busy) return;
-    sun.busy = true;
-    await click_ring(event, d);
-    sun.busy = false;
-  });
-  const eyeheight = emptyspace * 2;
-  ring.attr("transform", "scale(.3,.3)").attr("fill-opacity", 0).transition().duration(dur1).attr("transform", "scale(1,1)").attr("fill-opacity", 1).on("end", () => {
-    eye.shutter = eye.append("rect").attr("x", -emptyspace).attr("y", -emptyspace).attr("width", emptyspace * 2).attr("height", 0).attr("fill", "#ededed").on("click", () => remove(sun));
-    eye.shutter.transition().duration(dur2).attr("height", emptyspace * 2).on("end", () => {
-      eye.fore = eye.append("g");
-      const fontsize1 = Math.min(eyeheight / (chartlabel.length * textlensf), emptyspace * 0.6);
-      eye.fore.append("text").text(chartlabel).attr("text-anchor", "middle").attr("dominant-baseline", "central").attr("fill", "#858585").attr("font-weight", "bold").attr("font-family", "Arial").attr("font-size", fontsize1);
-      const fontsize = Math.min(
-        18,
-        Math.min(
-          emptyspace * 0.7 / (occurrence.toString().length * textlensf),
-          (emptyspace - fontsize1 / 2) * 0.7
-        )
-      );
-      eye.fore.append("text").text(occurrence).attr("text-anchor", "middle").attr("fill", "#858585").attr("y", -fontsize1 / 2 - 2).attr("font-family", "Arial").attr("font-size", fontsize);
-      eye.append("rect").attr("x", -emptyspace).attr("y", -emptyspace).attr("width", emptyspace * 2).attr("height", emptyspace * 2).attr("fill", "black").attr("fill-opacity", 0).attr("data-testid", `sjpp-sunburstEye-${chartlabel}`).on("click", () => {
-        if (sun.busy) return;
-        remove(sun);
-      }).on("mousedown", (event) => {
-        event.preventDefault();
-        event.stopPropagation();
-        const mx = event.clientX, my = event.clientY, body = select_default(document.body);
-        let cx0 = sun.cx, cy0 = sun.cy;
-        body.on("mousemove", (event2) => {
-          sun.busy = true;
-          sun.cx = cx0 + event2.clientX - mx;
-          sun.cy = cy0 + event2.clientY - my;
-          g.attr("transform", "translate(" + sun.cx + "," + sun.cy + ")");
-        }).on("mouseup", () => {
-          setTimeout(() => sun.busy = false, 10);
-          body.on("mousemove", null).on("mouseup", null);
-        });
-      });
-      if (click_listbutton) {
-        sun.listbutt = eye.append("g").attr("transform", "translate(0," + fontsize1 / 2 + ")");
-        const listbutt_bg = sun.listbutt.append("rect").attr("x", -eyeheight / 2).attr("width", eyeheight).attr("height", emptyspace - fontsize1 / 2).attr("fill", "#d9d9d9");
-        const listbutt_text = sun.listbutt.append("text").text("Info").attr("y", (emptyspace - fontsize1 / 2) / 2).attr("dominant-baseline", "central").attr("text-anchor", "middle").attr("font-family", "Arial").attr("fill", "#858585").attr("font-size", Math.min(18, fontsize));
-        sun.listbutt.append("rect").classed("sja_info_click", true).attr("x", -eyeheight / 2).attr("width", eyeheight).attr("height", emptyspace - fontsize1 / 2).attr("fill-opacity", 0).on("mouseover", () => {
-          listbutt_bg.attr("fill", "#bababa");
-          listbutt_text.attr("fill", "white");
-        }).on("mouseout", () => {
-          listbutt_bg.attr("fill", "#d9d9d9");
-          listbutt_text.attr("fill", "#858585");
-        }).on("click", (event) => {
-          remove(sun);
-          const x = event.clientX - radius, y = event.clientY - radius;
-          setTimeout(() => click_listbutton(x, y), dur1);
-        });
-      }
-    });
-  });
-}
-function remove(sun) {
-  sun.busy = true;
-  if (sun.eye.fore) {
-    sun.eye.fore.remove();
-  }
-  if (sun.listbutt) {
-    sun.listbutt.remove();
-  }
-  if (sun.eye.shutter) {
-    sun.eye.shutter.transition().attr("height", 0).on("end", () => {
-      sun.ring.transition().attr("transform", "scale(.5,.5)").attr("fill-opacity", 0).on("end", () => {
-        sun.g.remove();
-        sun.pica.g.selectAll("*").remove();
-      });
-    });
-  } else {
-    sun.ring.transition().attr("transform", "scale(.5,.5)").attr("fill-opacity", 0).on("end", () => {
-      sun.g.remove();
-      sun.pica.g.selectAll("*").remove();
-    });
-  }
-  sun.pica.g.selectAll("*").remove();
-}
-function slicemouseover(d, sun) {
-  const fontsize = 13;
-  const barheight = 10;
-  const ypad = 1;
-  let toangle = (d.x0 + d.x1) / 2;
-  if (toangle >= 0.375 && toangle <= 0.625) {
-    const yoff = sun.boxyoff + sun.cy + d.outradius;
-    const picaheight = fontsize + ypad + fontsize;
-    if (yoff >= sun.svgheight - 30) {
-      if (toangle <= 0.5) {
-        toangle = Math.max(0.25, d.x0);
-      } else {
-        toangle = Math.min(0.75, d.x1);
-      }
-    }
-  }
-  sun.pica.g.selectAll("*").remove();
-  const x = sun.cx + (d.outradius + 5) * Math.sin(Math.PI * 2 * toangle);
-  const y = sun.cy - (d.outradius + 5) * Math.cos(Math.PI * 2 * toangle);
-  sun.pica.g.attr("transform", "translate(" + x + "," + y + ")");
-  const barwidth = 60;
-  let bar = null;
-  const cohortsize = d.data.cohortsize;
-  if (Number.isFinite(cohortsize)) {
-    bar = sun.pica.g.append("g");
-    bar.append("rect").attr("width", barwidth + 4).attr("height", barheight + 4).attr("fill", "white").attr("shape-rendering", "crispEdges");
-    bar.append("rect").attr("x", 2).attr("y", 2).attr("width", barwidth).attr("height", barheight).attr("fill", "#ECE5FF").attr("shape-rendering", "crispEdges");
-    bar.append("rect").attr("x", 2).attr("y", 2).attr("width", barwidth * Math.min(1, d.value / cohortsize)).attr("height", barheight).attr("fill", "#9F80FF").attr("shape-rendering", "crispEdges");
-  }
-  const text0 = sun.pica.g.append("text").attr("stroke", "white").attr("stroke-width", 3).attr("font-size", fontsize).attr("font-family", "Arial");
-  const text = sun.pica.g.append("text").attr("fill", "black").attr("fill-opacity", 1).attr("font-size", fontsize).attr("font-family", "Arial");
-  const textt = d.data.name + ", " + d.value + " sample" + (d.value > 1 ? "s" : "");
-  text0.text(d.data.name);
-  text.text(d.data.name);
-  const text20 = sun.pica.g.append("text").attr("stroke", "white").attr("stroke-width", 3).attr("font-size", fontsize).attr("font-family", "Arial");
-  const text2 = sun.pica.g.append("text").attr("fill", "black").attr("fill-opacity", 1).attr("font-size", fontsize).attr("font-family", "Arial");
-  const tt = d.value + " sample" + (d.value > 1 ? "s" : "") + (bar ? " (" + cohortsize + " total)" : "");
-  text20.text(tt);
-  text2.text(tt);
-  const textwidth = Math.max(text.node().getBBox().width, text2.node().getBBox().width);
-  if (toangle < 0.25) {
-    text20.attr("y", bar ? -3 - barheight - ypad : 0);
-    text2.attr("y", bar ? -3 - barheight - ypad : 0);
-    text0.attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
-    text.attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
-    if (bar) {
-      bar.attr("transform", "translate(0,-" + barheight + ")");
-    }
-  } else if (toangle < 0.5) {
-    text0.attr("dominant-baseline", "hanging").attr("y", 0);
-    text.attr("dominant-baseline", "hanging").attr("y", 0);
-    text20.attr("dominant-baseline", "hanging").attr("y", ypad + fontsize);
-    text2.attr("dominant-baseline", "hanging").attr("y", ypad + fontsize);
-    if (bar) {
-      bar.attr("transform", "translate(0," + (fontsize + ypad) * 2 + ")");
-    }
-  } else if (toangle < 0.75) {
-    text0.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", 0);
-    text.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", 0);
-    text20.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", ypad + fontsize);
-    text2.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", ypad + fontsize);
-    if (bar) {
-      bar.attr("transform", "translate(-" + barwidth + "," + (fontsize + ypad) * 2 + ")");
-    }
-  } else {
-    text20.attr("text-anchor", "end").attr("y", bar ? -3 - barheight - ypad : 0);
-    text2.attr("text-anchor", "end").attr("y", bar ? -3 - barheight - ypad : 0);
-    text0.attr("text-anchor", "end").attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
-    text.attr("text-anchor", "end").attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
-    if (bar) {
-      bar.attr("transform", "translate(-" + barwidth + ",-" + barheight + ")");
-    }
-  }
-}
-export {
-  sunburst_default as default
-};
-//# sourceMappingURL=sunburst-HPDML45I.js.map

package/dist/survival-E6SRRXBB.js

@@ -1,44 +0,0 @@
-import {
-  componentInit,
-  getPlotConfig,
-  survivalInit,
-  t0_t2_defaultQ
-} from "./chunk-WGSWVYHY.js";
-import "./chunk-KISFQDQE.js";
-import "./chunk-V2OJLJSK.js";
-import "./chunk-XZZLEHWC.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-CJJ6LDZM.js";
-import "./chunk-2SRMRC6L.js";
-import "./chunk-QEHUEG4X.js";
-import "./chunk-XDI4UFCZ.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-5EF5U7MX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-MVTCBVSX.js";
-import "./chunk-SEQLC4AD.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-2TIYJ3PH.js";
-import "./chunk-RIGZHHCP.js";
-import "./chunk-AAEXTQT3.js";
-import "./chunk-2UWHV2SB.js";
-import "./chunk-ZLH4PJKX.js";
-import "./chunk-TV74I3Y5.js";
-import "./chunk-IH7ILDJS.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-SEEYV6P2.js";
-import "./chunk-NDWTN4U5.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-HFNDKYVF.js";
-export {
-  componentInit,
-  getPlotConfig,
-  survivalInit,
-  t0_t2_defaultQ
-};
-//# sourceMappingURL=survival-E6SRRXBB.js.map

package/dist/survival-XOXDPXZR.js

@@ -1,56 +0,0 @@
-import {
-  getPillNameDefault
-} from "./chunk-XZZLEHWC.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-CJJ6LDZM.js";
-import "./chunk-2SRMRC6L.js";
-import "./chunk-QEHUEG4X.js";
-import "./chunk-XDI4UFCZ.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-5EF5U7MX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-MVTCBVSX.js";
-import "./chunk-SEQLC4AD.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-2TIYJ3PH.js";
-import "./chunk-RIGZHHCP.js";
-import "./chunk-AAEXTQT3.js";
-import "./chunk-2UWHV2SB.js";
-import "./chunk-ZLH4PJKX.js";
-import "./chunk-TV74I3Y5.js";
-import "./chunk-IH7ILDJS.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-SEEYV6P2.js";
-import "./chunk-NDWTN4U5.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-HFNDKYVF.js";
-
-// termsetting/handlers/survival.ts
-function getHandler(self) {
-  return {
-    async showEditMenu(div) {
-      if (!div) return;
-    },
-    getPillStatus() {
-    },
-    getPillName(d) {
-      return getPillNameDefault(self, d);
-    }
-  };
-}
-function fillTW(tw, vocabApi) {
-  if (tw) {
-  }
-  if (vocabApi) {
-  }
-}
-export {
-  fillTW,
-  getHandler
-};
-//# sourceMappingURL=survival-XOXDPXZR.js.map