@sjcrh/proteinpaint-client 2.170.21 → 2.170.23

package/dist/{hierCluster-7LSQZBDB.js → hierCluster-54BKKQ44.js}

@@ -2,41 +2,41 @@ import {
   HierCluster,
   componentInit,
   hierClusterInit
-} from "./chunk-EIBJYYWV.js";
+} from "./chunk-ZMYYCORH.js";
 import "./chunk-ECRSBZLZ.js";
-import "./chunk-S2HEJABN.js";
+import "./chunk-YYWSZV5S.js";
 import {
   getPlotConfig
-} from "./chunk-HEDJB65N.js";
-import "./chunk-HWBM5EIT.js";
-import "./chunk-NZR3WNO6.js";
+} from "./chunk-WVKSA7YU.js";
+import "./chunk-OM5BLCRN.js";
+import "./chunk-N4XAZC5O.js";
 import "./chunk-ZSPOCZOT.js";
 import "./chunk-FM7QZO5J.js";
 import "./chunk-5WBTCRRV.js";
 import "./chunk-NPCN4T5F.js";
-import "./chunk-TINZX7UD.js";
+import "./chunk-XJYLUSJH.js";
 import "./chunk-DCY4THOO.js";
 import "./chunk-CNBWECUD.js";
-import "./chunk-W55E4RPB.js";
-import "./chunk-GYKTYGJQ.js";
+import "./chunk-7DFVPWFW.js";
+import "./chunk-G54EMJTA.js";
 import "./chunk-A5TSPTYC.js";
-import "./chunk-MPDW5RZN.js";
-import "./chunk-VO5VI2LE.js";
-import "./chunk-2KJMSFOW.js";
+import "./chunk-LJG5K5IY.js";
+import "./chunk-AVOKYZGR.js";
+import "./chunk-TZ25ECOQ.js";
 import "./chunk-V2OJLJSK.js";
-import "./chunk-CTRQJ6M4.js";
+import "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -56,4 +56,4 @@ export {
   getPlotConfig,
   hierClusterInit
 };
-//# sourceMappingURL=hierCluster-7LSQZBDB.js.map
+//# sourceMappingURL=hierCluster-54BKKQ44.js.map

package/dist/{hierCluster-APLSHBKU.js → hierCluster-DLGVELGL.js}

@@ -2,38 +2,38 @@ import {
   HierCluster,
   componentInit,
   hierClusterInit
-} from "./chunk-EIBJYYWV.js";
+} from "./chunk-ZMYYCORH.js";
 import "./chunk-ECRSBZLZ.js";
-import "./chunk-S2HEJABN.js";
-import "./chunk-HWBM5EIT.js";
-import "./chunk-NZR3WNO6.js";
+import "./chunk-YYWSZV5S.js";
+import "./chunk-OM5BLCRN.js";
+import "./chunk-N4XAZC5O.js";
 import "./chunk-ZSPOCZOT.js";
 import "./chunk-FM7QZO5J.js";
 import "./chunk-5WBTCRRV.js";
 import "./chunk-NPCN4T5F.js";
-import "./chunk-TINZX7UD.js";
+import "./chunk-XJYLUSJH.js";
 import "./chunk-DCY4THOO.js";
 import "./chunk-CNBWECUD.js";
-import "./chunk-W55E4RPB.js";
-import "./chunk-GYKTYGJQ.js";
+import "./chunk-7DFVPWFW.js";
+import "./chunk-G54EMJTA.js";
 import "./chunk-A5TSPTYC.js";
-import "./chunk-MPDW5RZN.js";
-import "./chunk-VO5VI2LE.js";
-import "./chunk-2KJMSFOW.js";
+import "./chunk-LJG5K5IY.js";
+import "./chunk-AVOKYZGR.js";
+import "./chunk-TZ25ECOQ.js";
 import "./chunk-V2OJLJSK.js";
-import "./chunk-CTRQJ6M4.js";
+import "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -52,4 +52,4 @@ export {
   componentInit,
   hierClusterInit
 };
-//# sourceMappingURL=hierCluster-APLSHBKU.js.map
+//# sourceMappingURL=hierCluster-DLGVELGL.js.map

package/dist/{hierCluster.config-AEBDTH52.js → hierCluster.config-GUYZGTEW.js}

@@ -1,21 +1,21 @@
 import {
   getPlotConfig
-} from "./chunk-HEDJB65N.js";
-import "./chunk-TINZX7UD.js";
+} from "./chunk-WVKSA7YU.js";
+import "./chunk-XJYLUSJH.js";
 import "./chunk-DCY4THOO.js";
-import "./chunk-CTRQJ6M4.js";
+import "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -32,4 +32,4 @@ import "./chunk-HFNDKYVF.js";
 export {
   getPlotConfig
 };
-//# sourceMappingURL=hierCluster.config-AEBDTH52.js.map
+//# sourceMappingURL=hierCluster.config-GUYZGTEW.js.map

package/dist/{hierCluster.integration.spec-AQAC4IRZ.js → hierCluster.integration.spec-QPLO6REA.js}

@@ -1,34 +1,34 @@
-import "./chunk-JUAB6AWT.js";
+import "./chunk-VMNJ3CBS.js";
 import {
   appInit
-} from "./chunk-UWYO26OF.js";
-import "./chunk-CENQDG7A.js";
+} from "./chunk-RZWCVHII.js";
+import "./chunk-VOUTHIB5.js";
 import "./chunk-SKMFMGCD.js";
-import "./chunk-JUT2O3BR.js";
+import "./chunk-5FTNFH4T.js";
 import {
   detectOne,
   sleep
-} from "./chunk-XENPVHIO.js";
+} from "./chunk-M7MBFGEA.js";
 import {
   require_tape
 } from "./chunk-EFPC6YYT.js";
-import "./chunk-ULFFSC6N.js";
-import "./chunk-CA5LLXPV.js";
-import "./chunk-L2XKBMRK.js";
-import "./chunk-MWGHZ2OR.js";
-import "./chunk-JZJJOLHH.js";
-import "./chunk-IMCHIQT2.js";
+import "./chunk-XDBGOZED.js";
+import "./chunk-3KMTDBZT.js";
+import "./chunk-RVZ6M5MM.js";
+import "./chunk-2Y7E546M.js";
+import "./chunk-LRFMJ4EE.js";
+import "./chunk-HTNDG4VX.js";
 import "./chunk-MKAF2BHB.js";
 import "./chunk-DONWY7TP.js";
-import "./chunk-XG4HJBT5.js";
+import "./chunk-XULJ2UUC.js";
 import "./chunk-PRZWSBMA.js";
 import {
   fillTermWrapper
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import {
   NUMERIC_DICTIONARY_TERM,
   TermTypes
@@ -37,9 +37,9 @@ import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -387,4 +387,4 @@ function getGenes() {
     { gene: "KRAS", type: "geneExpression" }
   ];
 }
-//# sourceMappingURL=hierCluster.integration.spec-AQAC4IRZ.js.map
+//# sourceMappingURL=hierCluster.integration.spec-QPLO6REA.js.map

package/dist/hierCluster.integration.spec-QPLO6REA.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/matrix/test/hierCluster.integration.spec.js"],
+  "sourcesContent": ["import tape from 'tape'\nimport * as helpers from '#test/front.helpers.js'\nimport { sleep, detectOne, detectGte, detectLst, detectAttr } from '#test/test.helpers.js'\nimport { select } from 'd3-selection'\nimport { appInit } from '#plots/plot.app.js'\nimport { fillTermWrapper } from '#termsetting'\nimport { TermTypes, NUMERIC_DICTIONARY_TERM } from '#shared/terms.js'\n\n/**************\n test sections\n\nbasic render\nfilter\navoid race condition\ndendrogram click\n\n***************/\n\ntape('\\n', function (test) {\n\ttest.comment('-***- plots/hierCluster.js -***-')\n\ttest.end()\n})\n\ntape('basic render', async test => {\n\ttest.timeoutAfter(4000)\n\tconst { app, hc } = await getHierClusterApp({ terms: getGenes() })\n\ttest.equal(hc.dom.termLabelG.selectAll('.sjpp-matrix-label').size(), 4, 'should render 4 gene rows')\n\ttest.equal(hc.dom.sampleLabelG.selectAll('.sjpp-matrix-label').size(), 60, 'should render 60 sample columns') // update \"60\" when data changes\n\tif (test._ok) app.destroy()\n\ttest.end()\n})\n\ntape('filter', async test => {\n\ttest.timeoutAfter(4000)\n\tconst { app, hc } = await getHierClusterApp({\n\t\tterms: getGenes(),\n\t\tfilter: {\n\t\t\ttype: 'tvslst',\n\t\t\tjoin: '',\n\t\t\tin: true,\n\t\t\tlst: [{ type: 'tvs', tvs: { term: { id: 'diaggrp' }, values: [{ key: 'Acute lymphoblastic leukemia' }] } }]\n\t\t}\n\t})\n\ttest.equal(hc.dom.sampleLabelG.selectAll('.sjpp-matrix-label').size(), 36, 'should render 36 sample columns') // update \"36\" when data changes\n\tif (test._ok) app.destroy()\n\ttest.end()\n})\n\ntape('avoid race condition - specified gene list', async test => {\n\t// !!!\n\t// to allow an app or chart code to fail due to race condition,\n\t// hardcode a constant value or comment out the ++ for the sequenceID\n\t// in rx/src/StoreApi.write()\n\t// !!!\n\ttest.timeoutAfter(4000)\n\ttest.plan(4)\n\tconst { app, hc } = await getHierClusterApp({ terms: getGenes() })\n\tconst termgroups = structuredClone(hc.config.termgroups)\n\tconst lst = await Promise.all([\n\t\tfillTermWrapper({ term: { gene: 'KRAS', name: 'KRAS', type: 'geneExpression' } }, app.vocabApi),\n\t\tfillTermWrapper({ term: { gene: 'AKT1', name: 'AKT1', type: 'geneExpression' } }, app.vocabApi),\n\t\tfillTermWrapper({ term: { gene: 'TP53', name: 'TP53', type: 'geneExpression' } }, app.vocabApi),\n\t\tfillTermWrapper({ term: { gene: 'BCR', name: 'BCR', type: 'geneExpression' } }, app.vocabApi)\n\t])\n\ttermgroups[0].lst = lst\n\tconst responseDelay = 250\n\thc.origRequestData = hc.requestData\n\thc.requestData = async () => {\n\t\tconst lst = hc.config.termgroups[0].lst\n\t\tconst data = await hc.origRequestData({})\n\t\tif (lst.length === 3) return data\n\t\t// artificially delay response to first request, to simulate a race condition\n\t\t// do this after the network request, so that this.api.getAbortSignal() in hc.requestData()\n\t\t// will generate the correct signal based on the order of dispatch/sequenceId\n\t\tawait sleep(250)\n\t\treturn data\n\t}\n\n\tconst prom = {}\n\tconst postRenderTest = new Promise(resolve => {\n\t\tprom.resolve = resolve\n\t})\n\tapp.on('postRender.test1', () => {\n\t\tapp.on('postRender.test1', null)\n\t\tprom.resolve()\n\t})\n\n\tawait Promise.all([\n\t\tapp.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: hc.id,\n\t\t\tconfig: { termgroups }\n\t\t}),\n\t\t(async () => {\n\t\t\tawait sleep(0)\n\t\t\tconst termgroups = structuredClone(hc.config.termgroups)\n\t\t\ttermgroups[0].lst = lst.slice(0, 3)\n\t\t\tawait app.dispatch({\n\t\t\t\ttype: 'plot_edit',\n\t\t\t\tid: hc.id,\n\t\t\t\tconfig: { termgroups }\n\t\t\t})\n\t\t})()\n\t])\n\n\tawait postRenderTest\n\tawait sleep(responseDelay + 500)\n\t// run tests after the delayed response, as part of simulating the race condition\n\ttest.equal(hc.dom.termLabelG.selectAll('.sjpp-matrix-label').size(), 3, 'should render 3 gene rows')\n\tconst rects = hc.dom.seriesesG.selectAll('.sjpp-mass-series-g rect')\n\tconst hits = rects.filter(d => d.key !== 'BCR' && d.value.class != 'WT' && d.value.class != 'Blank')\n\ttest.equal(\n\t\trects.size(),\n\t\t180,\n\t\t'should have the expected total number of matrix cell rects, inlcuding WT and not tested'\n\t)\n\ttest.equal(hits.size(), 180, 'should have the expected number of matrix cell rects with hits')\n\ttest.equal(\n\t\tapp.Inner.dom.holder\n\t\t\t.selectAll('.sja_errorbar')\n\t\t\t.filter(function () {\n\t\t\t\treturn this.style.display != 'none'\n\t\t\t})\n\t\t\t.size(),\n\t\t0,\n\t\t'should not display errors'\n\t)\n\tif (test._ok) app.destroy()\n})\n\ntape('avoid race condition - reused fetch response cache', async test => {\n\t// !!!\n\t// to allow an app or chart code to fail due to race condition,\n\t// hardcode a constant value or comment out the ++ for the sequenceID\n\t// in rx/src/StoreApi.write()\n\t// !!!\n\ttest.timeoutAfter(4000)\n\ttest.plan(4)\n\t// the same terms lst as the previous tape() test above will trigger the reuse of cached fetch response\n\tconst { app, hc } = await getHierClusterApp({ terms: getGenes() })\n\tconst termgroups = structuredClone(hc.config.termgroups)\n\tconst responseDelay = 250\n\thc.origRequestData = hc.requestData\n\thc.requestData = async () => {\n\t\tconst lst = hc.config.termgroups[0].lst\n\t\tconst data = await hc.origRequestData({})\n\t\tif (lst.length === 3) return data\n\t\treturn data\n\t\t// artificially delay response to first request, to simulate a race condition\n\t\tawait sleep(responseDelay)\n\t\treturn data\n\t}\n\n\tconst prom = {}\n\tconst postRenderTest = new Promise(resolve => {\n\t\tprom.resolve = resolve\n\t})\n\tapp.on('postRender.test1', () => {\n\t\tapp.on('postRender.test1', null)\n\t\tprom.resolve()\n\t})\n\n\tawait Promise.all([\n\t\tapp.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: hc.id,\n\t\t\tconfig: { termgroups }\n\t\t}),\n\t\t(async () => {\n\t\t\t// sleep() >1 second will not cause an error when reusing a cached fetch response;\n\t\t\t// sleep(0) below is worst case for testing\n\t\t\tawait sleep(0)\n\t\t\tconst _termgroups = structuredClone(termgroups)\n\t\t\t_termgroups[0].lst = _termgroups[0].lst.slice(0, 3)\n\t\t\tawait app.dispatch({\n\t\t\t\ttype: 'plot_edit',\n\t\t\t\tid: hc.id,\n\t\t\t\tconfig: { termgroups: _termgroups }\n\t\t\t})\n\t\t})()\n\t])\n\n\tawait postRenderTest\n\tawait sleep(responseDelay + 500)\n\t// run tests after the delayed response, as part of simulating the race condition\n\ttest.equal(hc.dom.termLabelG.selectAll('.sjpp-matrix-label').size(), 3, 'should render 3 gene rows')\n\tconst rects = hc.dom.seriesesG.selectAll('.sjpp-mass-series-g rect')\n\tconst hits = rects.filter(d => d.key !== 'BCR' && d.value.class != 'WT' && d.value.class != 'Blank')\n\ttest.equal(\n\t\trects.size(),\n\t\t180,\n\t\t'should have the expected total number of matrix cell rects, inlcuding WT and not tested'\n\t)\n\ttest.equal(hits.size(), 180, 'should have the expected number of matrix cell rects with hits')\n\ttest.equal(\n\t\tapp.Inner.dom.holder\n\t\t\t.selectAll('.sja_errorbar')\n\t\t\t.filter(function () {\n\t\t\t\treturn this.style.display != 'none'\n\t\t\t})\n\t\t\t.size(),\n\t\t0,\n\t\t'should not display errors'\n\t)\n\tif (test._ok) app.destroy()\n})\n\ntape('dendrogram click', async function (test) {\n\ttest.timeoutAfter(5000)\n\ttest.plan(3)\n\n\tlet numRenders = 0\n\tconst { app, hc } = await getHierClusterApp({ terms: getGenes() })\n\n\tconst img = await detectOne({ elem: hc.dom.topDendrogram.node(), selector: 'image' })\n\tconst svgBox = hc.dom.svg.node().getBoundingClientRect()\n\tconst imgBox = img.getBBox()\n\t// helper to see onscreen the x, y position of the click\n\t// select('body')\n\t// \t.append('div')\n\t// \t.style('position', 'absolute')\n\t// \t.style('top', svgBox.y + imgBox.y + imgBox.height/2)\n\t// \t.style('left', svgBox.x + hc.dimensions.xOffset + imgBox.x + imgBox.width/2)\n\t// \t.style('width', '5px').style('height', '5px')\n\t// \t.style('background-color', '#00f')\n\n\timg.dispatchEvent(\n\t\tnew MouseEvent('click', {\n\t\t\t//'view': window,\n\t\t\tbubbles: true,\n\t\t\tcancelable: true,\n\t\t\tclientX: svgBox.x + hc.dimensions.xOffset + imgBox.x + imgBox.width / 2,\n\t\t\tclientY: svgBox.y + imgBox.y + imgBox.height / 2\n\t\t})\n\t)\n\n\t// not able to nail down all the expected dataURI strings based on env\n\t// const dataUriEnd = hc.dom.topDendrogram.select('image')?.attr('href').slice(-60) || ''\n\t// const expectedUriEnd =\n\t// \twindow.devicePixelRatio === 1 && window.navigator.userAgent.includes('Electron')\n\t// \t\t? `VXLf89aL9WK9WC/DBawX62X4bDm168v/A9duR9df7eS8AAAAAElFTkSuQmCC`\n\t// \t\t: window.devicePixelRatio === 1\n\t// \t\t? `IyHnD+cP5w/nj/4CjhfHS/9qObXnl/8PkgA61yIPYtsAAAAASUVORK5CYII=`\n\t// \t\t: window.navigator.userAgent?.includes(`Electron`) // headless test\n\t// \t\t? `PgFeeOlp0S+88MJLnwAvvPS06Je9vfwCG6yWyx1uowQAAAAASUVORK5CYII=` // retina screen, headless\n\t// \t\t: `8NLTol944YWXPgFeeOlp0S+88HK+lx/PjoLLYOCCJQAAAABJRU5ErkJggg==` // retina screen\n\t//\n\t// test.equal(dataUriEnd, expectedUriEnd, `should rerender with the expected dataURI after a dendrogram click`)\n\n\ttest.deepEqual(\n\t\thc.clickedClusterIds,\n\t\t[\n\t\t\t46, 54, 37, 28, 27, 51, 53, 44, 49, 25, 34, 11, 20, 41, 45, 29, 33, 17, 15, 2, 38, 42, 30, 36, 22, 9, 14, 3, 4,\n\t\t\t31, 13, 26, 1, 16, 8, 10, 5, 6, 7, 23, 47, 48, 35, 43, 21, 32, 18, 24, 56\n\t\t],\n\t\t`should give the expected clickedClusterIds`\n\t)\n\n\ttest.deepEqual(\n\t\t['Zoom in', 'List 50 samples'],\n\t\t[...hc.dom.dendroClickMenu.d.node().querySelectorAll('.sja_menuoption')].map(elem => elem.__data__.label),\n\t\t'should show the expected menu options on dendrogram click'\n\t)\n\n\thc.dom.dendroClickMenu.d.node().querySelector('.sja_menuoption').parentNode.lastChild.click()\n\tawait sleep(5)\n\ttest.equal(\n\t\thc.dom.dendroClickMenu.d.node().querySelectorAll('.sjpp_row_wrapper').length,\n\t\t50,\n\t\t'should list the expected number of samples'\n\t)\n\tif (test._ok) {\n\t\thc.dom.dendroClickMenu.clear().hide()\n\t\tapp.destroy()\n\t}\n})\n\ntape('numericDictTerm', async function (test) {\n\t// leave it here in case it's used later: bins:{ default:{\"type\": \"regular-bin\", \"startinclusive\": true, \"bin_size\": 0.1, \"first_bin\": { \"stop\": 0.1 }, \"last_bin\": { \"start\": 0.7 }} }\n\tconst terms = [\n\t\t{\n\t\t\tid: 'aaclassic_5', // tw.id must be provided\n\t\t\tterm: { id: 'aaclassic_5', name: 'a1', type: 'float' }, // requires {id,name,type}; term.name doesn't need to be real, unique name works\n\t\t\tq: { mode: 'continuous' } // set to continuous to avoid validating tw.term.bins\n\t\t},\n\t\t{ id: 'hrtavg', term: { id: 'hrtavg', name: 'a2', type: 'float' }, q: { mode: 'continuous' } },\n\t\t{ id: 'agedx', term: { id: 'agedx', name: 'a3', type: 'float' }, q: { mode: 'continuous' } }\n\t]\n\tconst { app, hc } = await getHierClusterApp({ terms, dataType: NUMERIC_DICTIONARY_TERM 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getBBox()\n\t\t\t\t\t\t\tavailContentWidth: 1200\n\t\t\t\t\t\t}\n\t\t\t\t\t},\n\t\t\t\t\t// force empty termgroups, genes since the instance requestData() will not have expression data,\n\t\t\t\t\t// and will cause a non-trival error if using the actual requestData(), which will be mocked below\n\t\t\t\t\ttermgroups: [], // _opts.termgroups || [],\n\t\t\t\t\t// !!! there will be an initial load error since this is an empty geneset,\n\t\t\t\t\t// !!! but will be ignored since it's not relevant to this test\n\t\t\t\t\tterms: _opts.terms || [],\n\t\t\t\t\tfilter: _opts.filter\n\t\t\t\t}\n\t\t\t]\n\t\t},\n\t\tapp: {\n\t\t\tfeatures: ['recover'],\n\t\t\tcallbacks: _opts?.app?.callbacks || {}\n\t\t},\n\t\trecover: {\n\t\t\tundoHtml: 'Undo',\n\t\t\tredoHtml: 'Redo',\n\t\t\tresetHtml: 'Restore',\n\t\t\tadjustTrackedState(state) {\n\t\t\t\tconst s = structuredClone(state)\n\t\t\t\tdelete s.termfilter.filter0\n\t\t\t\treturn s\n\t\t\t}\n\t\t},\n\t\thierCluster: _opts?.hierCluster || {}\n\t}\n\n\tconst opts = Object.assign(defaults, _opts)\n\tconst app = await appInit(opts)\n\tholder.select('.sja_errorbar').node()?.lastChild?.click()\n\tconst hc = Object.values(app.Inner.components.plots).find(\n\t\tp => p.type == 'hierCluster' || p.chartType == 'hierCluster'\n\t).Inner\n\treturn { app, hc }\n}\nfunction getGenes() {\n\t// return a copy for each test, to avoid unexpected changes in reusing scoped variables\n\treturn [\n\t\t{ gene: 'AKT1', type: 'geneExpression' },\n\t\t{ gene: 'TP53', type: 'geneExpression' },\n\t\t{ gene: 'BCR', type: 'geneExpression' },\n\t\t{ gene: 'KRAS', type: 'geneExpression' }\n\t]\n}\n"],
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+  "names": ["tape", "lst", "termgroups"]
+}

package/dist/{hierCluster.interactivity-IUHCF25Z.js → hierCluster.interactivity-URC4TOXY.js}

@@ -8,20 +8,20 @@ import {
   showTable4selectedRows,
   showTable4selectedSamples,
   triggerZoomBranch
-} from "./chunk-S2HEJABN.js";
-import "./chunk-CTRQJ6M4.js";
+} from "./chunk-YYWSZV5S.js";
+import "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -46,4 +46,4 @@ export {
   showTable4selectedSamples,
   triggerZoomBranch
 };
-//# sourceMappingURL=hierCluster.interactivity-IUHCF25Z.js.map
+//# sourceMappingURL=hierCluster.interactivity-URC4TOXY.js.map

package/dist/{imagePlot-6WTC55I7.js → imagePlot-UTTJUD4R.js}

@@ -1,21 +1,21 @@
 import {
   controlsInit
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
 import {
   copyMerge,
   getCompInit
-} from "./chunk-VGLPN6PS.js";
+} from "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -122,7 +122,7 @@ async function renderImagePlot(state, holder, sample) {
       ]
     }
   };
-  const plot = await import("./plot.app-YGVH25VS.js");
+  const plot = await import("./plot.app-FSC2AQFH.js");
   const plotAppApi = await plot.appInit(opts);
 }
 export {
@@ -132,4 +132,4 @@ export {
   imagePlotInit,
   renderImagePlot
 };
-//# sourceMappingURL=imagePlot-6WTC55I7.js.map
+//# sourceMappingURL=imagePlot-UTTJUD4R.js.map

package/dist/importPlot-L2J4NM7V.js

@@ -0,0 +1,8 @@
+import {
+  importPlot
+} from "./chunk-PZ7WCWYR.js";
+import "./chunk-HFNDKYVF.js";
+export {
+  importPlot
+};
+//# sourceMappingURL=importPlot-L2J4NM7V.js.map

package/dist/{launch.adhoc-FH6TIDI3.js → launch.adhoc-DZWJHDQH.js}

@@ -1,23 +1,23 @@
 import {
   launch
-} from "./chunk-ZB2OEEK2.js";
-import "./chunk-UWYO26OF.js";
-import "./chunk-CENQDG7A.js";
+} from "./chunk-OLMWMYZM.js";
+import "./chunk-RZWCVHII.js";
+import "./chunk-VOUTHIB5.js";
 import "./chunk-SKMFMGCD.js";
-import "./chunk-JUT2O3BR.js";
-import "./chunk-CTRQJ6M4.js";
+import "./chunk-5FTNFH4T.js";
+import "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -34,4 +34,4 @@ import "./chunk-HFNDKYVF.js";
 export {
   launch
 };
-//# sourceMappingURL=launch.adhoc-FH6TIDI3.js.map
+//# sourceMappingURL=launch.adhoc-DZWJHDQH.js.map

package/dist/{leftlabel.sample-IHA6AM63.js → leftlabel.sample-4NRQFG6G.js}

@@ -2,32 +2,32 @@ import {
   displaySampleTable,
   getFilterName,
   makelabel
-} from "./chunk-NLBQ2GUL.js";
-import "./chunk-Y4B6ALEU.js";
+} from "./chunk-FLRBOZQC.js";
+import "./chunk-BJORP6HK.js";
 import "./chunk-V2OJLJSK.js";
-import "./chunk-CKY3ZZAO.js";
+import "./chunk-VU5VYG3S.js";
 import "./chunk-SKMFMGCD.js";
 import "./chunk-DONWY7TP.js";
-import "./chunk-XG4HJBT5.js";
+import "./chunk-XULJ2UUC.js";
 import {
   Tabs,
   fillbar,
   filterInit,
   getNormalRoot,
   renderTable
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import {
@@ -250,4 +250,4 @@ export {
   makeSampleFilterLabel,
   makeSampleLabel
 };
-//# sourceMappingURL=leftlabel.sample-IHA6AM63.js.map
+//# sourceMappingURL=leftlabel.sample-4NRQFG6G.js.map

package/dist/{lollipop-CE5O2SGO.js → lollipop-HT3WW4H5.js}

@@ -1,26 +1,26 @@
 import {
   block_init_default
-} from "./chunk-JZJJOLHH.js";
+} from "./chunk-LRFMJ4EE.js";
 import {
   addGeneSearchbox,
   first_genetrack_tolist
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import {
   Menu
 } from "./chunk-OGVY5ALW.js";
 import {
   dofetch3
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -130,7 +130,7 @@ async function init(arg, holder, genomes) {
     }
     graphDiv.selectAll("*").remove();
     if (!arg.geneSearch4GDCmds3.hardcodeCnvOnly) return await block_init_default(pa);
-    const _ = await import("./block-CHK3JXWE.js");
+    const _ = await import("./block-6XQF343G.js");
     return new _.Block(pa);
   }
   const api = {
@@ -160,4 +160,4 @@ function getSelectedIsoform(coordInput, gmlst) {
 export {
   init
 };
-//# sourceMappingURL=lollipop-CE5O2SGO.js.map
+//# sourceMappingURL=lollipop-HT3WW4H5.js.map

package/dist/{maf-LPLH7TDL.js → maf-Y4XEWK5W.js}

@@ -3,24 +3,24 @@ import {
   renderTable,
   sayerror,
   table2col
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import {
   Menu
 } from "./chunk-OGVY5ALW.js";
 import {
   dofetch3,
   fileSize
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -436,4 +436,4 @@ async function getFilesAndShowTable(obj) {
 export {
   gdcMAFui
 };
-//# sourceMappingURL=maf-LPLH7TDL.js.map
+//# sourceMappingURL=maf-Y4XEWK5W.js.map

package/dist/{maftimeline-IEYWUW6W.js → maftimeline-Y3HSIRLL.js}

@@ -7,21 +7,21 @@ import {
   newpane3,
   renderSandboxFormDiv,
   to_svg
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import {
   Menu
 } from "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -585,4 +585,4 @@ function makecontrol(snvlst, header, holder, graphholder, g1, g2, g3, g4) {
 export {
   maftimelineui as default
 };
-//# sourceMappingURL=maftimeline-IEYWUW6W.js.map
+//# sourceMappingURL=maftimeline-Y3HSIRLL.js.map

package/dist/{matrix-7S2WDPLS.js → matrix-SFABUCQW.js}

@@ -3,35 +3,35 @@ import {
   componentInit,
   makeChartBtnMenu,
   matrixInit
-} from "./chunk-HWBM5EIT.js";
-import "./chunk-NZR3WNO6.js";
+} from "./chunk-OM5BLCRN.js";
+import "./chunk-N4XAZC5O.js";
 import "./chunk-ZSPOCZOT.js";
 import "./chunk-FM7QZO5J.js";
 import "./chunk-5WBTCRRV.js";
 import "./chunk-NPCN4T5F.js";
-import "./chunk-TINZX7UD.js";
+import "./chunk-XJYLUSJH.js";
 import "./chunk-DCY4THOO.js";
 import "./chunk-CNBWECUD.js";
-import "./chunk-W55E4RPB.js";
-import "./chunk-GYKTYGJQ.js";
+import "./chunk-7DFVPWFW.js";
+import "./chunk-G54EMJTA.js";
 import "./chunk-A5TSPTYC.js";
-import "./chunk-MPDW5RZN.js";
-import "./chunk-VO5VI2LE.js";
-import "./chunk-2KJMSFOW.js";
+import "./chunk-LJG5K5IY.js";
+import "./chunk-AVOKYZGR.js";
+import "./chunk-TZ25ECOQ.js";
 import "./chunk-V2OJLJSK.js";
-import "./chunk-CTRQJ6M4.js";
+import "./chunk-IKXK6WW5.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-DXDHMTY7.js";
+import "./chunk-PZ7WCWYR.js";
 import "./chunk-OGVY5ALW.js";
-import "./chunk-QIE5DTBW.js";
+import "./chunk-ABMFFNR4.js";
 import "./chunk-YJWWWCJ6.js";
 import "./chunk-6RC5V24O.js";
 import "./chunk-IQIXGTQV.js";
 import "./chunk-ITJ2SXU5.js";
 import "./chunk-FN5XPUPH.js";
-import "./chunk-CY52TN75.js";
-import "./chunk-PFBEIJLF.js";
-import "./chunk-VGLPN6PS.js";
+import "./chunk-7UR62HW6.js";
+import "./chunk-WQENZXSN.js";
+import "./chunk-KZBB7S6A.js";
 import "./chunk-LSEFWW72.js";
 import "./chunk-DQC5FFGV.js";
 import "./chunk-YCLN3A4F.js";
@@ -51,4 +51,4 @@ export {
   makeChartBtnMenu,
   matrixInit
 };
-//# sourceMappingURL=matrix-7S2WDPLS.js.map
+//# sourceMappingURL=matrix-SFABUCQW.js.map