@sjcrh/proteinpaint-client 2.170.21 → 2.170.23

package/dist/{chunk-FPT6OILW.js.map → chunk-W5IT2MO3.js.map}

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../mass/plot.js", "../mass/app.ts"],
-  "sourcesContent": ["import { getCompInit, copyMerge, multiInit } from '#rx'\nimport { Menu } from '#dom/menu'\n// import { recoverInit } from '../rx/src/recover'\nimport { select as d3select } from 'd3-selection'\nimport { importPlot } from '#plots/importPlot.js'\nimport { filterRxCompInit } from '#filter'\n\n/*\n\tMassPlot is a \"wrapper\" for chart component(s).\n\tIt creates expected plot-specific elements like an error div, undo-redo buttons, and local filter.\n*/\nclass MassPlot {\n\tstatic type = 'plot'\n\n\tconstructor(opts) {\n\t\tthis.type = MassPlot.type\n\t\tsetRenderers(this)\n\t\tthis.initUi(opts)\n\t}\n\n\treactsTo(action) {\n\t\tif (action.type.includes('cache_termq')) return true\n\t\tif (action.type.endsWith('_group')) return true\n\t\tif (action.type.startsWith('plot_')) {\n\t\t\t// action.parentId == this.id is a special case to react when deleting a child plot of this plot,\n\t\t\t// for example in the profile comparison, when closing one of the comparison plots\n\t\t\treturn (\n\t\t\t\taction.id === this.id ||\n\t\t\t\taction.id == this.parentId ||\n\t\t\t\taction.config?.parentId === this.id ||\n\t\t\t\taction.parentId === this.id\n\t\t\t)\n\t\t}\n\t\tif (action.type.startsWith('filter')) return true\n\t\tif (action.type.startsWith('cohort')) return true\n\t\tif (action.type == 'app_refresh') return true\n\t\tif (action.type.endsWith('customTerm')) return true\n\t}\n\n\t// !!! NOTE: This getState() method is reused by the plot-specific recover component.\n\t// When logging something within getState, it may have been called by either the plot or recover instance\n\tgetState(appState) {\n\t\tconst config = appState.plots.find(p => p.id === this.id)\n\t\tif (!config) {\n\t\t\tthrow `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`\n\t\t}\n\t\treturn {\n\t\t\ttermfilter: appState.termfilter,\n\t\t\tconfig,\n\t\t\tgroups: appState.groups,\n\t\t\t// quick fix to skip history tracking as needed\n\t\t\t_scope_: appState._scope_\n\t\t}\n\t}\n\n\tasync main() {\n\t\tthis.dom.errdiv.style('display', 'none').style('background-color', 'rgba(255,100,100,0.2)').html('')\n\t\tif (!this.components) await this.setComponents(this.opts)\n\t}\n\n\tasync setComponents(opts) {\n\t\tconst _ = await importPlot(opts.chartType)\n\t\tconst promises = {\n\t\t\t// recover: recoverInit({\n\t\t\t// \tapp: this.app,\n\t\t\t// \tholder: this.dom.localRecoverDiv,\n\t\t\t// \tgetState: appState => this.getState(appState),\n\t\t\t// \treactsTo: action =>\n\t\t\t// \t\taction.id == this.id &&\n\t\t\t// \t\t(action.type == 'plot_edit' || action.type == 'plot_nestedEdits') &&\n\t\t\t// \t\taction._track_ != 'none',\n\t\t\t// \tplot_id: this.id,\n\t\t\t// \tmaxHistoryLen: 10,\n\t\t\t// \thideLabel: true\n\t\t\t// }),\n\t\t\tchart: _.componentInit({\n\t\t\t\tapp: this.app,\n\t\t\t\tholder: this.dom.viz,\n\t\t\t\theader: this.dom.paneTitleDiv,\n\t\t\t\tid: this.id,\n\t\t\t\tplotDiv: d3select(this.dom.holder.app_div.node().parentNode),\n\t\t\t\t/******* reason for passing plotDiv to chart ********\n\t\t\t\t- this plot instance may allow to launch a new plot as a persistent sandbox\n\t\t\t\t  inside mass plotDiv, maintaining the uniform plot appearance despite it's ad-hoc\n\t\t\t\t  the new plot is not a formal mass plot type, and cannot be done via app.dispatch()\n\t\t\t\t  thus the need to directly access plotDiv\n\t\t\t\t- example: mds3 tk from genome browser can launch disco etc\n\t\t\t\t- having access to plotDiv may offer flexibility for the plot to do stuff\n\n\t\t\t\tsince plot.js has no access to mass app .dom.plotDiv in which all apps are shown,\n\t\t\t\tthis workarounds gets the parent node of sandbox.app_div which is app.dom.plotDiv\n\t\t\t\t*/\n\t\t\t\tgetFilterImage: async () => this.components.filter.getFilterImage()\n\t\t\t})\n\t\t}\n\n\t\tif (!this.state.config.hidePlotFilter)\n\t\t\tpromises.filter = filterRxCompInit({\n\t\t\t\tapp: this.app,\n\t\t\t\tvocabApi: this.app.vocabApi,\n\t\t\t\tparentId: this.id,\n\t\t\t\tholder: this.dom.filterDiv,\n\t\t\t\thideLabel: true,\n\t\t\t\temptyLabel: '+Add new filter',\n\t\t\t\tcallback: filter => {\n\t\t\t\t\tthis.app.dispatch({\n\t\t\t\t\t\tid: this.id,\n\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\tconfig: { filter }\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t})\n\n\t\tthis.components = await multiInit(promises)\n\t}\n\n\tdestroy() {\n\t\t// the dom.holder itself is not a d3-selection,\n\t\t// so need to specify a destroy function here\n\t\t// since the default rx.componentApi.destroy()\n\t\t// does not work when dom.holder is not a d3-selection\n\t\tthis.dom.holder.app_div.selectAll('*').remove()\n\t\tthis.dom.holder.app_div.remove()\n\t\tfor (const key in this.dom) {\n\t\t\tdelete this.dom[key]\n\t\t}\n\t}\n}\n\nexport const plotInit = getCompInit(MassPlot)\n\nfunction setRenderers(self) {\n\tself.initUi = function (opts) {\n\t\t// opts={app, chartType:str, holder, id, debug}\n\n\t\tconst holder = opts.holder // \"sandbox\" obj: {app_div, body, header, header_row, id}\n\n\t\t// since chartType is already given in constructor opts, create test id with chart type as a simple way to identify the box\n\t\topts.holder.app_div.attr('data-testid', 'sjpp-massplot-sandbox-' + opts.chartType)\n\n\t\tholder.header.style('padding', 0)\n\n\t\ttry {\n\t\t\tself.dom = {\n\t\t\t\ttip: new Menu({ padding: '0px' }),\n\t\t\t\tholder,\n\t\t\t\tpaneTitleDiv: holder.header\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.style('display', 'inline-block')\n\t\t\t\t\t.style('color', '#555')\n\t\t\t\t\t.style('padding-left', '7px')\n\t\t\t\t\t.style('vertical-align', 'sub'),\n\t\t\t\tlocalRecoverDiv: holder.header.append('div').style('display', 'inline-block'),\n\t\t\t\tfilterDiv: holder.header.append('div').style('display', 'inline-block').style('zoom', 0.9),\n\t\t\t\tbody: holder.body.style('white-space', 'nowrap').style('overflow-x', 'auto'),\n\n\t\t\t\t// will hold no data notice or the page title in multichart views\n\t\t\t\terrdiv: holder.body\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.style('display', 'none')\n\t\t\t\t\t.style('padding', '5px')\n\t\t\t\t\t.style('background-color', 'rgba(255,100,100,0.2)'),\n\n\t\t\t\t// dom.viz will hold the rendered view\n\t\t\t\tviz: holder.body.append('div')\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tself.dom.errdiv.style('display', 'none').text(e)\n\t\t}\n\t}\n}\n", "import { AppApi, type StoreApi, type ComponentApi, type RxApp } from '#rx'\nimport { AppBase } from '#plots/AppBase.ts'\nimport { storeInit } from './store'\nimport { vocabInit } from '#termdb/vocabulary'\nimport { navInit } from './nav'\nimport { plotInit } from './plot'\nimport { summaryInit } from '#plots/summary.js'\nimport { sayerror, Menu, newSandboxDiv, downloadSVGsAsPdf } from '#dom'\n\n/*\nopts{}\n.genome{}\n\tclient-side genome object\n\tshould be required\n.state{}\n\trequired, will fill-in or override store.defaultState\n \t.genome\n \t.dslabel\n \t.tree{} etc\n\n.app\n\t.onFilterChange\n\tIf it is provided when the global filter is edited\n\tthis function is called (from mass/store). Used by the profile dataset so far,\n\tto clear the profile local filters\n*/\n\nclass MassApp extends AppBase implements RxApp {\n\tstatic type = 'app'\n\n\t// expected RxApp, some are already declared/set in AppBase\n\tapi: AppApi\n\ttype: string\n\tparentId?: string\n\tdom!: {\n\t\t[index: string]: any\n\t}\n\tcomponents: {\n\t\t[name: string]: ComponentApi | { [name: string]: ComponentApi }\n\t} = {}\n\n\twasDestroyed = false\n\tstore!: StoreApi\n\tplotIdToSandboxId: { [plotId: string]: string }\n\tbus!: any\n\n\t// expected class-specific props\n\n\tconstructor(opts, api) {\n\t\tsuper(opts)\n\t\tthis.api = api\n\n\t\tif (opts.addLoginCallback) {\n\t\t\topts.addLoginCallback(() => this.api.dispatch({ type: 'app_refresh' }))\n\t\t}\n\n\t\tthis.type = 'app'\n\t\t// this will create divs in the correct order\n\t\tthis.dom = {\n\t\t\tholder: opts.holder, // do not modify holder style\n\t\t\ttopbar: opts.holder.append('div'),\n\t\t\terrdiv: opts.holder.append('div'),\n\t\t\tplotDiv: opts.holder.append('div')\n\t\t}\n\n\t\t// track plots by ID, and assign\n\t\tthis.plotIdToSandboxId = {}\n\t}\n\n\tasync preApiFreeze(api) {\n\t\ttry {\n\t\t\tapi.tip = new Menu({ padding: '5px' })\n\t\t\tapi.tip.d.on('keyup', event => {\n\t\t\t\tif (event.key == 'Escape') api.tip.hide()\n\t\t\t})\n\t\t\tapi.printError = e => this.printError(e)\n\n\t\t\t// TODO: only pass state.genome, dslabel to vocabInit\n\t\t\tapi.vocabApi = await vocabInit({\n\t\t\t\tapp: api,\n\t\t\t\tstate: { vocab: this.opts.state.vocab },\n\t\t\t\tfetchOpts: this.opts.fetchOpts,\n\t\t\t\tgetDatasetAccessToken: this.opts.getDatasetAccessToken\n\t\t\t})\n\n\t\t\tapi.hasWebGL = function () {\n\t\t\t\t//Copied from static/js/WEBGL.js\n\t\t\t\ttry {\n\t\t\t\t\tconst canvas = document.createElement('canvas')\n\t\t\t\t\treturn !!(\n\t\t\t\t\t\twindow.WebGLRenderingContext &&\n\t\t\t\t\t\t(canvas.getContext('webgl') || canvas.getContext('experimental-webgl'))\n\t\t\t\t\t)\n\t\t\t\t} catch (_) {\n\t\t\t\t\treturn false\n\t\t\t\t}\n\t\t\t}\n\t\t\t// the vocabApi's vocab may be reprocessed from the original input\n\t\t\tthis.opts.state.vocab = api.vocabApi.vocab\n\t\t} catch (e) {\n\t\t\tconsole.log(`preApiFreeze error`, e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync init() {\n\t\t// catch initialization error\n\t\ttry {\n\t\t\t// TODO: may default later to having a debouncer ???\n\t\t\tconst debounceInterval = 'debounceInterval' in this.opts ? this.opts.debounceInterval : 0\n\t\t\t// NOTE: Within the same browser tab, a refresh should load the embedder's intended page\n\t\t\t// and not the recovered session, to avoid confusing default page load behavior. If a user\n\t\t\t// wants to see the initial recovered state view in the embedder portal, they would have\n\t\t\t// to click on a link again. May revisit this approach and reactivate the commented out code below.\n\t\t\tconst embeddedSessionState = this.opts.embeddedSessionState // || JSON.parse(sessionStorage.getItem('embeddedSessionState') || `null`)\n\t\t\tif (embeddedSessionState) {\n\t\t\t\t// may assume session state recovery for an embedder portal\n\t\t\t\t// see the comment about potential race-condition in childCorsMessage embedder-helpers.js\n\t\t\t\tObject.assign(this.opts.state, embeddedSessionState)\n\t\t\t}\n\t\t\tthis.store = await storeInit({ app: this.api, state: this.opts.state, debounceInterval })\n\t\t\tthis.state = await this.store.copyState()\n\t\t\tthis.components = {}\n\t\t\tif (this.state.nav.header_mode != 'hidden') {\n\t\t\t\tthis.components.nav = await navInit({\n\t\t\t\t\tapp: this.api,\n\t\t\t\t\tholder: this.dom.topbar,\n\t\t\t\t\theader_mode: this.state && this.state.nav && this.state.nav.header_mode,\n\t\t\t\t\tvocab: this.state.vocab,\n\t\t\t\t\tmassSessionDuration: this.state.termdbConfig.massSessionDuration, // this.opts.massSessionDuration\n\t\t\t\t\tpkgver: this.opts.pkgver,\n\t\t\t\t\tdownloadPlots: () => {\n\t\t\t\t\t\tthis.downloadPlots()\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\t\t\tthis.components.plots = {}\n\t\t\tif (this.opts.app?.doNotAwaitInitRender) {\n\t\t\t\t// do not await to return the instance sooner and allow calling appApi.triggerAbort() before initial render,\n\t\t\t\t// instead of waiting for initial data loading and rendering\n\t\t\t\tthis.api.dispatch()\n\t\t\t} else {\n\t\t\t\tawait this.api.dispatch()\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tthis.printError(e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync main() {\n\t\tawait this.api.vocabApi.main()\n\t\t//Do not show the plots below the about tab\n\t\tthis.dom.plotDiv?.style(\n\t\t\t'display',\n\t\t\tthis.state.nav?.header_mode != 'hidden' && this.state.nav?.activeTab == 0 ? 'none' : 'block'\n\t\t)\n\n\t\tconst newPlots = {}\n\t\tlet sandbox\n\t\tfor (const plot of this.state.plots) {\n\t\t\t// plots with parentId means the parent plot will trigger the plot instead of being triggered here\n\t\t\tif (plot.parentId) continue\n\t\t\tif (this.components.plots && !(plot.id in this.components.plots)) {\n\t\t\t\tsandbox = newSandboxDiv(this.dom.plotDiv, {\n\t\t\t\t\tclose: () => {\n\t\t\t\t\t\tthis.api.dispatch({\n\t\t\t\t\t\t\ttype: 'plot_delete',\n\t\t\t\t\t\t\tid: plot.id\n\t\t\t\t\t\t})\n\t\t\t\t\t},\n\t\t\t\t\tplotId: plot.id,\n\t\t\t\t\tbeforePlotId: plot.insertBefore || null,\n\t\t\t\t\tstyle: {\n\t\t\t\t\t\twidth: '98.5%'\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tif (plot.chartType == 'summary')\n\t\t\t\t\tnewPlots[plot.id] = summaryInit(Object.assign({ app: this.api, holder: sandbox }, plot))\n\t\t\t\telse newPlots[plot.id] = plotInit(Object.assign({ app: this.api, holder: sandbox }, plot))\n\t\t\t}\n\t\t}\n\n\t\t// simultaneous initialization of multiple new plots;\n\t\t// if done inside the for-of loop above, the await kewyword\n\t\t// will delay subsequent plot initializations\n\t\tconst numNewPlots = Object.keys(newPlots).length\n\t\tif (numNewPlots) {\n\t\t\tawait Promise.all(Object.values(newPlots))\n\t\t\tfor (const plotId in newPlots) {\n\t\t\t\tthis.components.plots[plotId] = await newPlots[plotId]\n\t\t\t}\n\t\t}\n\n\t\tfor (const plotId in this.components.plots) {\n\t\t\tif (!this.state.plots.find(p => p.id === plotId)) {\n\t\t\t\tthis.components.plots[plotId].destroy()\n\t\t\t\tdelete this.components.plots[plotId]\n\t\t\t}\n\t\t}\n\t}\n\n\tprintError(e) {\n\t\tconst errdiv = e.errdiv || this.dom.errdiv\n\t\tif (errdiv) errdiv.style('display', '').html('').style('background-color', '')\n\t\tsayerror(errdiv || this.opts.holder, 'Error: ' + (e.message || e.error || e))\n\t\tif (e.stack) console.log(e.stack)\n\t\tthis.bus.emit('error')\n\t}\n\n\tasync downloadPlots() {\n\t\tconst chartImagesAll: any[] = []\n\t\tlet i = 1\n\t\tconst values: any[] = Object.values(this.components.plots)\n\t\tfor (const plot of values) {\n\t\t\tconst chart = plot.type == 'plot' ? plot.getComponents('chart') : plot // implies summary plot\n\t\t\tconst chartImages = chart.getChartImages ? chart.getChartImages() : null\n\t\t\tif (!chartImages) {\n\t\t\t\tconsole.log(`The ${chart.type} does not support downloading images yet`)\n\t\t\t\tcontinue\n\t\t\t}\n\n\t\t\tfor (const chartImage of chartImages) {\n\t\t\t\tif (values.length > 1) chartImage.name = `${i}. ${chartImage.name}`\n\t\t\t\tchartImagesAll.push(chartImage)\n\t\t\t}\n\t\t\ti++\n\t\t}\n\t\tif (chartImagesAll.length > 0) {\n\t\t\tconst filters: any[] = []\n\t\t\tconst globalFilterImg = await (this.components.nav as ComponentApi).getComponents('filter').getFilterImage()\n\t\t\tif (globalFilterImg) filters.push(globalFilterImg)\n\t\t\tdownloadSVGsAsPdf(chartImagesAll, 'plots', 'landscape', filters)\n\t\t} else alert('No chart images available for download')\n\t}\n}\n\nexport const appInit = AppApi.getInitFxn(MassApp)\n"],
-  "mappings": 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+  "sourcesContent": ["import { getCompInit, copyMerge, multiInit } from '#rx'\nimport { Menu } from '#dom/menu'\n// import { recoverInit } from '../rx/src/recover'\nimport { select as d3select } from 'd3-selection'\nimport { importPlot } from '#plots/importPlot.js'\nimport { filterRxCompInit } from '#filter'\n\n/*\n\tMassPlot is a \"wrapper\" for chart component(s).\n\tIt creates expected plot-specific elements like an error div, undo-redo buttons, and local filter.\n*/\nclass MassPlot {\n\tstatic type = 'plot'\n\n\tconstructor(opts) {\n\t\tthis.type = MassPlot.type\n\t\tsetRenderers(this)\n\t\tthis.initUi(opts)\n\t}\n\n\treactsTo(action) {\n\t\tif (action.type.includes('cache_termq')) return true\n\t\tif (action.type.endsWith('_group')) return true\n\t\tif (action.type.startsWith('plot_')) {\n\t\t\t// action.parentId == this.id is a special case to react when deleting a child plot of this plot,\n\t\t\t// for example in the profile comparison, when closing one of the comparison plots\n\t\t\treturn (\n\t\t\t\taction.id === this.id ||\n\t\t\t\taction.id == this.parentId ||\n\t\t\t\taction.config?.parentId === this.id ||\n\t\t\t\taction.parentId === this.id\n\t\t\t)\n\t\t}\n\t\tif (action.type.startsWith('filter')) return true\n\t\tif (action.type.startsWith('cohort')) return true\n\t\tif (action.type == 'app_refresh') return true\n\t\tif (action.type.endsWith('customTerm')) return true\n\t}\n\n\t// !!! 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\thideLabel: true\n\t\t\t// }),\n\t\t\tchart: _.componentInit({\n\t\t\t\tapp: this.app,\n\t\t\t\tholder: this.dom.viz,\n\t\t\t\theader: this.dom.paneTitleDiv,\n\t\t\t\tid: this.id,\n\t\t\t\tplotDiv: d3select(this.dom.holder.app_div.node().parentNode),\n\t\t\t\t/******* reason for passing plotDiv to chart ********\n\t\t\t\t- this plot instance may allow to launch a new plot as a persistent sandbox\n\t\t\t\t  inside mass plotDiv, maintaining the uniform plot appearance despite it's ad-hoc\n\t\t\t\t  the new plot is not a formal mass plot type, and cannot be done via app.dispatch()\n\t\t\t\t  thus the need to directly access plotDiv\n\t\t\t\t- example: mds3 tk from genome browser can launch disco etc\n\t\t\t\t- having access to plotDiv may offer flexibility for the plot to do stuff\n\n\t\t\t\tsince plot.js has no access to mass app .dom.plotDiv in which all apps are shown,\n\t\t\t\tthis workarounds gets the parent node of sandbox.app_div which is app.dom.plotDiv\n\t\t\t\t*/\n\t\t\t\tgetFilterImage: async () => this.components.filter.getFilterImage()\n\t\t\t})\n\t\t}\n\n\t\tif (!this.state.config.hidePlotFilter)\n\t\t\tpromises.filter = filterRxCompInit({\n\t\t\t\tapp: this.app,\n\t\t\t\tvocabApi: this.app.vocabApi,\n\t\t\t\tparentId: this.id,\n\t\t\t\tholder: this.dom.filterDiv,\n\t\t\t\thideLabel: true,\n\t\t\t\temptyLabel: '+Add new filter',\n\t\t\t\tcallback: filter => {\n\t\t\t\t\tthis.app.dispatch({\n\t\t\t\t\t\tid: this.id,\n\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\tconfig: { filter }\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t})\n\n\t\tthis.components = await multiInit(promises)\n\t}\n\n\tdestroy() {\n\t\t// the dom.holder itself is not a d3-selection,\n\t\t// so need to specify a destroy function here\n\t\t// since the default rx.componentApi.destroy()\n\t\t// does not work when dom.holder is not a d3-selection\n\t\tthis.dom.holder.app_div.selectAll('*').remove()\n\t\tthis.dom.holder.app_div.remove()\n\t\tfor (const key in this.dom) {\n\t\t\tdelete this.dom[key]\n\t\t}\n\t}\n}\n\nexport const plotInit = getCompInit(MassPlot)\n\nfunction setRenderers(self) {\n\tself.initUi = function (opts) {\n\t\t// opts={app, chartType:str, holder, id, debug}\n\n\t\tconst holder = opts.holder // \"sandbox\" obj: {app_div, body, header, header_row, id}\n\n\t\t// since chartType is already given in constructor opts, create test id with chart type as a simple way to identify the box\n\t\topts.holder.app_div.attr('data-testid', 'sjpp-massplot-sandbox-' + opts.chartType)\n\n\t\tholder.header.style('padding', 0)\n\n\t\ttry {\n\t\t\tself.dom = {\n\t\t\t\ttip: new Menu({ padding: '0px' }),\n\t\t\t\tholder,\n\t\t\t\tpaneTitleDiv: holder.header\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.style('display', 'inline-block')\n\t\t\t\t\t.style('color', '#555')\n\t\t\t\t\t.style('padding-left', '7px')\n\t\t\t\t\t.style('vertical-align', 'sub'),\n\t\t\t\tlocalRecoverDiv: holder.header.append('div').style('display', 'inline-block'),\n\t\t\t\tfilterDiv: holder.header.append('div').style('display', 'inline-block').style('zoom', 0.9),\n\t\t\t\tbody: holder.body.style('white-space', 'nowrap').style('overflow-x', 'auto'),\n\n\t\t\t\t// will hold no data notice or the page title in multichart views\n\t\t\t\terrdiv: holder.body\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.style('display', 'none')\n\t\t\t\t\t.style('padding', '5px')\n\t\t\t\t\t.style('background-color', 'rgba(255,100,100,0.2)'),\n\n\t\t\t\t// dom.viz will hold the rendered view\n\t\t\t\tviz: holder.body.append('div')\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tself.dom.errdiv.style('display', 'none').text(e)\n\t\t}\n\t}\n}\n", "import { AppApi, type StoreApi, type ComponentApi, type RxApp } from '#rx'\nimport { AppBase } from '#plots/AppBase.ts'\nimport { storeInit } from './store'\nimport { vocabInit } from '#termdb/vocabulary'\nimport { navInit } from './nav'\nimport { plotInit } from './plot'\nimport { summaryInit } from '#plots/summary.js'\nimport { sayerror, Menu, newSandboxDiv, downloadSVGsAsPdf } from '#dom'\n\n/*\nopts{}\n.genome{}\n\tclient-side genome object\n\tshould be required\n.state{}\n\trequired, will fill-in or override store.defaultState\n \t.genome\n \t.dslabel\n \t.tree{} etc\n\n.app\n\t.onFilterChange\n\tIf it is provided when the global filter is edited\n\tthis function is called (from mass/store). Used by the profile dataset so far,\n\tto clear the profile local filters\n*/\n\nclass MassApp extends AppBase implements RxApp {\n\tstatic type = 'app'\n\n\t// expected RxApp, some are already declared/set in AppBase\n\tapi: AppApi\n\ttype: string\n\tparentId?: string\n\tdom!: {\n\t\t[index: string]: any\n\t}\n\tcomponents: {\n\t\t[name: string]: ComponentApi | { [name: string]: ComponentApi }\n\t} = {}\n\n\twasDestroyed = false\n\tstore!: StoreApi\n\tplotIdToSandboxId: { [plotId: string]: string }\n\tbus!: any\n\n\t// expected class-specific props\n\n\tconstructor(opts, api) {\n\t\tsuper(opts)\n\t\tthis.api = api\n\n\t\tif (opts.addLoginCallback) {\n\t\t\topts.addLoginCallback(() => this.api.dispatch({ type: 'app_refresh' }))\n\t\t}\n\n\t\tthis.type = 'app'\n\t\t// this will create divs in the correct order\n\t\tthis.dom = {\n\t\t\tholder: opts.holder, // do not modify holder style\n\t\t\ttopbar: opts.holder.append('div'),\n\t\t\terrdiv: opts.holder.append('div'),\n\t\t\tplotDiv: opts.holder.append('div')\n\t\t}\n\n\t\t// track plots by ID, and assign\n\t\tthis.plotIdToSandboxId = {}\n\t}\n\n\tasync preApiFreeze(api) {\n\t\ttry {\n\t\t\tapi.tip = new Menu({ padding: '5px' })\n\t\t\tapi.tip.d.on('keyup', event => {\n\t\t\t\tif (event.key == 'Escape') api.tip.hide()\n\t\t\t})\n\t\t\tapi.printError = e => this.printError(e)\n\n\t\t\t// TODO: only pass state.genome, dslabel to vocabInit\n\t\t\tapi.vocabApi = await vocabInit({\n\t\t\t\tapp: api,\n\t\t\t\tstate: { vocab: this.opts.state.vocab },\n\t\t\t\tfetchOpts: this.opts.fetchOpts,\n\t\t\t\tgetDatasetAccessToken: this.opts.getDatasetAccessToken\n\t\t\t})\n\n\t\t\tapi.hasWebGL = function () {\n\t\t\t\t//Copied from static/js/WEBGL.js\n\t\t\t\ttry {\n\t\t\t\t\tconst canvas = document.createElement('canvas')\n\t\t\t\t\treturn !!(\n\t\t\t\t\t\twindow.WebGLRenderingContext &&\n\t\t\t\t\t\t(canvas.getContext('webgl') || canvas.getContext('experimental-webgl'))\n\t\t\t\t\t)\n\t\t\t\t} catch (_) {\n\t\t\t\t\treturn false\n\t\t\t\t}\n\t\t\t}\n\t\t\t// the vocabApi's vocab may be reprocessed from the original input\n\t\t\tthis.opts.state.vocab = api.vocabApi.vocab\n\t\t} catch (e) {\n\t\t\tconsole.log(`preApiFreeze error`, e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync init() {\n\t\t// catch initialization error\n\t\ttry {\n\t\t\t// TODO: may default later to having a debouncer ???\n\t\t\tconst debounceInterval = 'debounceInterval' in this.opts ? this.opts.debounceInterval : 0\n\t\t\t// NOTE: Within the same browser tab, a refresh should load the embedder's intended page\n\t\t\t// and not the recovered session, to avoid confusing default page load behavior. If a user\n\t\t\t// wants to see the initial recovered state view in the embedder portal, they would have\n\t\t\t// to click on a link again. May revisit this approach and reactivate the commented out code below.\n\t\t\tconst embeddedSessionState = this.opts.embeddedSessionState // || JSON.parse(sessionStorage.getItem('embeddedSessionState') || `null`)\n\t\t\tif (embeddedSessionState) {\n\t\t\t\t// may assume session state recovery for an embedder portal\n\t\t\t\t// see the comment about potential race-condition in childCorsMessage embedder-helpers.js\n\t\t\t\tObject.assign(this.opts.state, embeddedSessionState)\n\t\t\t}\n\t\t\tthis.store = await storeInit({ app: this.api, state: this.opts.state, debounceInterval })\n\t\t\tthis.state = await this.store.copyState()\n\t\t\tthis.components = {}\n\t\t\tif (this.state.nav.header_mode != 'hidden') {\n\t\t\t\tthis.components.nav = await navInit({\n\t\t\t\t\tapp: this.api,\n\t\t\t\t\tholder: this.dom.topbar,\n\t\t\t\t\theader_mode: this.state && this.state.nav && this.state.nav.header_mode,\n\t\t\t\t\tvocab: this.state.vocab,\n\t\t\t\t\tmassSessionDuration: this.state.termdbConfig.massSessionDuration, // this.opts.massSessionDuration\n\t\t\t\t\tpkgver: this.opts.pkgver,\n\t\t\t\t\tdownloadPlots: () => {\n\t\t\t\t\t\tthis.downloadPlots()\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\t\t\tthis.components.plots = {}\n\t\t\tif (this.opts.app?.doNotAwaitInitRender) {\n\t\t\t\t// do not await to return the instance sooner and allow calling appApi.triggerAbort() before initial render,\n\t\t\t\t// instead of waiting for initial data loading and rendering\n\t\t\t\tthis.api.dispatch()\n\t\t\t} else {\n\t\t\t\tawait this.api.dispatch()\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tthis.printError(e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync main() {\n\t\tawait this.api.vocabApi.main()\n\t\t//Do not show the plots below the about tab\n\t\tthis.dom.plotDiv?.style(\n\t\t\t'display',\n\t\t\tthis.state.nav?.header_mode != 'hidden' && this.state.nav?.activeTab == 0 ? 'none' : 'block'\n\t\t)\n\n\t\tconst newPlots = {}\n\t\tlet sandbox\n\t\tfor (const plot of this.state.plots) {\n\t\t\t// plots with parentId means the parent plot will trigger the plot instead of being triggered here\n\t\t\tif (plot.parentId) continue\n\t\t\tif (this.components.plots && !(plot.id in this.components.plots)) {\n\t\t\t\tsandbox = newSandboxDiv(this.dom.plotDiv, {\n\t\t\t\t\tclose: () => {\n\t\t\t\t\t\tthis.api.dispatch({\n\t\t\t\t\t\t\ttype: 'plot_delete',\n\t\t\t\t\t\t\tid: plot.id\n\t\t\t\t\t\t})\n\t\t\t\t\t},\n\t\t\t\t\tplotId: plot.id,\n\t\t\t\t\tbeforePlotId: plot.insertBefore || null,\n\t\t\t\t\tstyle: {\n\t\t\t\t\t\twidth: '98.5%'\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tif (plot.chartType == 'summary')\n\t\t\t\t\tnewPlots[plot.id] = summaryInit(Object.assign({ app: this.api, holder: sandbox }, plot))\n\t\t\t\telse newPlots[plot.id] = plotInit(Object.assign({ app: this.api, holder: sandbox }, plot))\n\t\t\t}\n\t\t}\n\n\t\t// simultaneous initialization of multiple new plots;\n\t\t// if done inside the for-of loop above, the await kewyword\n\t\t// will delay subsequent plot initializations\n\t\tconst numNewPlots = Object.keys(newPlots).length\n\t\tif (numNewPlots) {\n\t\t\tawait Promise.all(Object.values(newPlots))\n\t\t\tfor (const plotId in newPlots) {\n\t\t\t\tthis.components.plots[plotId] = await newPlots[plotId]\n\t\t\t}\n\t\t}\n\n\t\tfor (const plotId in this.components.plots) {\n\t\t\tif (!this.state.plots.find(p => p.id === plotId)) {\n\t\t\t\tthis.components.plots[plotId].destroy()\n\t\t\t\tdelete this.components.plots[plotId]\n\t\t\t}\n\t\t}\n\t}\n\n\tprintError(e) {\n\t\tconst errdiv = e.errdiv || this.dom.errdiv\n\t\tif (errdiv) errdiv.style('display', '').html('').style('background-color', '')\n\t\tsayerror(errdiv || this.opts.holder, 'Error: ' + (e.message || e.error || e))\n\t\tif (e.stack) console.log(e.stack)\n\t\tthis.bus.emit('error')\n\t}\n\n\tskipPrevActionAbort(action) {\n\t\t// may skip aborting previously dispatched actions in AppApi.dispatch()\n\t\t// if the new dispatched action doesn't affect all components; this will\n\t\t// allow plots and control menus to continue rendering while creating,\n\t\t// editing, or deleting another plot\n\t\tif (!action) return false\n\t\tif (action.type.startsWith('filter')) return false\n\t\tif (action.type.startsWith('cohort')) return false\n\t\tif (action.type == 'app_refresh') {\n\t\t\tif (action.subactions) {\n\t\t\t\treturn action.subactions.find(a => a.type.startsWith('filter') || a.type.startsWith('cohort')) ? false : true\n\t\t\t}\n\t\t}\n\t\treturn true\n\t}\n\n\tasync downloadPlots() {\n\t\tconst chartImagesAll: any[] = []\n\t\tlet i = 1\n\t\tconst values: any[] = Object.values(this.components.plots)\n\t\tfor (const plot of values) {\n\t\t\tconst chart = plot.type == 'plot' ? plot.getComponents('chart') : plot // implies summary plot\n\t\t\tconst chartImages = chart.getChartImages ? chart.getChartImages() : null\n\t\t\tif (!chartImages) {\n\t\t\t\tconsole.log(`The ${chart.type} does not support downloading images yet`)\n\t\t\t\tcontinue\n\t\t\t}\n\n\t\t\tfor (const chartImage of chartImages) {\n\t\t\t\tif (values.length > 1) chartImage.name = `${i}. ${chartImage.name}`\n\t\t\t\tchartImagesAll.push(chartImage)\n\t\t\t}\n\t\t\ti++\n\t\t}\n\t\tif (chartImagesAll.length > 0) {\n\t\t\tconst filters: any[] = []\n\t\t\tconst globalFilterImg = await (this.components.nav as ComponentApi).getComponents('filter').getFilterImage()\n\t\t\tif (globalFilterImg) filters.push(globalFilterImg)\n\t\t\tdownloadSVGsAsPdf(chartImagesAll, 'plots', 'landscape', filters)\n\t\t} else alert('No chart images available for download')\n\t}\n}\n\nexport const appInit = AppApi.getInitFxn(MassApp)\n"],
+  "mappings": 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   "names": []
 }

package/dist/{chunk-PFBEIJLF.js → chunk-WQENZXSN.js}

@@ -1,7 +1,7 @@
 import {
   copyMerge,
   getInitFxn
-} from "./chunk-VGLPN6PS.js";
+} from "./chunk-KZBB7S6A.js";
 
 // termdb/termInfo.js
 var defaultState = { isVisible: false, term: null };
@@ -114,4 +114,4 @@ function setInteractivity(self) {
 export {
   termInfoInit
 };
-//# sourceMappingURL=chunk-PFBEIJLF.js.map
+//# sourceMappingURL=chunk-WQENZXSN.js.map

package/dist/{chunk-HEDJB65N.js → chunk-WVKSA7YU.js}

@@ -1,16 +1,16 @@
 import {
   getPlotConfig
-} from "./chunk-TINZX7UD.js";
+} from "./chunk-XJYLUSJH.js";
 import {
   fillTermWrapper
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   TermTypes,
   numericTypes
 } from "./chunk-YJWWWCJ6.js";
 import {
   copyMerge
-} from "./chunk-VGLPN6PS.js";
+} from "./chunk-KZBB7S6A.js";
 
 // plots/matrix/hierCluster.config.js
 async function getPlotConfig2(opts = {}, app) {
@@ -92,4 +92,4 @@ function canTermBeInHierGrp(grpType, twType) {
 export {
   getPlotConfig2 as getPlotConfig
 };
-//# sourceMappingURL=chunk-HEDJB65N.js.map
+//# sourceMappingURL=chunk-WVKSA7YU.js.map

package/dist/{chunk-EHM4V22E.js → chunk-X4GU2VKQ.js}

@@ -1,9 +1,9 @@
 import {
   make_radios
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   initBinConfig
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import {
   format
 } from "./chunk-W2IWHXLL.js";
@@ -212,4 +212,4 @@ var NumRegularBinEditor = class {
 export {
   NumRegularBinEditor
 };
-//# sourceMappingURL=chunk-EHM4V22E.js.map
+//# sourceMappingURL=chunk-X4GU2VKQ.js.map

package/dist/{chunk-ULFFSC6N.js → chunk-XDBGOZED.js}

@@ -3,18 +3,18 @@ import {
   init_mdsjson,
   mayLaunchGdcPlotFromRunpp,
   parse
-} from "./chunk-CA5LLXPV.js";
+} from "./chunk-3KMTDBZT.js";
 import {
   bulkembed,
   bulkui,
   loadstudycohort
-} from "./chunk-L2XKBMRK.js";
+} from "./chunk-RVZ6M5MM.js";
 import {
   block_init_default
-} from "./chunk-JZJJOLHH.js";
+} from "./chunk-LRFMJ4EE.js";
 import {
   findgenemodel_bysymbol
-} from "./chunk-IMCHIQT2.js";
+} from "./chunk-HTNDG4VX.js";
 import {
   urlmap_default
 } from "./chunk-DONWY7TP.js";
@@ -26,7 +26,7 @@ import {
   renderSandboxFormDiv,
   sayerror,
   tkt
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   string2pos
 } from "./chunk-HJ6L54YS.js";
@@ -40,7 +40,7 @@ import {
   dofetch2,
   dofetch3,
   setAuth
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import {
   applyOverrides,
   mclass
@@ -1775,7 +1775,7 @@ function runproteinpaint(arg) {
     selectAll_default(".sja_pane").remove();
     return;
   }
-  app.holder = select_default(arg.holder || document.body).append("div").attr("class", "sja_root_holder").attr("data-ppclientversion", `2.170.21`).style("font-size", "1em").style("color", "black").on("click", (e) => {
+  app.holder = select_default(arg.holder || document.body).append("div").attr("class", "sja_root_holder").attr("data-ppclientversion", `2.170.23`).style("font-size", "1em").style("color", "black").on("click", (e) => {
     e.stopPropagation();
     if (e.target.tagName == "BUTTON") e.preventDefault();
   });
@@ -1826,7 +1826,7 @@ function runproteinpaint(arg) {
       }
     }
     if (!arg.noheader && !arg.mass && !arg.massSessionId && !arg.massSessionFile && !window.location.search.includes("noheader") && !window.location.search.includes("mass-session-id") && !window.location.search.includes("mass-session-file") && !window.location.search.includes("mass-session-url") && !window.location.search.includes("massnative") && !window.location.search.includes("mass")) {
-      const _ = await import("./AppHeader-IRDFPBAQ.js");
+      const _ = await import("./AppHeader-JUBKPSEB.js");
       const appHeader = new _.AppHeader({
         headtip,
         app,
@@ -2118,7 +2118,7 @@ async function parseEmbedThenUrl(arg, app) {
       getDatasetAccessToken: arg.getDatasetAccessToken,
       addLoginCallback: arg.addLoginCallback
     };
-    const _ = await import("./app-C4XKYGIR.js");
+    const _ = await import("./app-6DWGFTEB.js");
     _.appInit(opts);
     return;
   }
@@ -2147,7 +2147,7 @@ async function parseEmbedThenUrl(arg, app) {
       state,
       genome: app.genomes[state.vocab.genome]
     };
-    const _ = await import("./app-C4XKYGIR.js");
+    const _ = await import("./app-6DWGFTEB.js");
     _.appInit(opts);
     return;
   }
@@ -2229,7 +2229,7 @@ async function launchmdssamplescatterplot(arg, app) {
     app.error0("neither .dataset or .analysisdata is given");
     return;
   }
-  import("./mds.samplescatterplot-D7YELQN4.js").then((_) => {
+  import("./mds.samplescatterplot-J5GDKNYU.js").then((_) => {
     _.init(arg, app.holder0, app.debugmode);
   });
 }
@@ -2259,7 +2259,7 @@ function launchmdssurvivalplot(arg, app) {
       p.renderplot = 1;
     }
   }
-  import("./mds.survivalplot-Y34T6NSI.js").then((_) => {
+  import("./mds.survivalplot-N72ATZJR.js").then((_) => {
     _.init(arg, app.holder0, app.debugmode);
   });
 }
@@ -2275,7 +2275,7 @@ function launch_fimo(arg, app) {
   }
   arg.genome = genome;
   arg.div = app.holder0;
-  import("./mds.fimo-6WSBGGFB.js").then((_) => {
+  import("./mds.fimo-LTKB4SWO.js").then((_) => {
     _.init(arg);
   });
 }
@@ -2295,7 +2295,7 @@ function launchhic(hic, app) {
   }
   hic.hostURL = app.hostURL;
   hic.holder = app.holder0;
-  import("./HicApp-F3Y2WFLI.js").then(async (_) => {
+  import("./HicApp-555HNG3L.js").then(async (_) => {
     await _.hicInit(hic, app.debugmode);
   });
 }
@@ -2312,7 +2312,7 @@ function launchsamplematrix(cfg, app) {
   cfg.hostURL = app.hostURL;
   cfg.holder = app.holder0;
   cfg.debugmode = app.debugmode;
-  import("./samplematrix-TSEHYV3F.js").then((_) => {
+  import("./samplematrix-PXNCBXIJ.js").then((_) => {
     new _.Samplematrix(cfg);
   });
 }
@@ -2556,7 +2556,7 @@ async function launchblock(arg, app) {
       }
     }
   }
-  return import("./block-CHK3JXWE.js").then((b) => {
+  return import("./block-6XQF343G.js").then((b) => {
     app.block = new b.Block(blockinitarg);
     return app;
   });
@@ -2564,7 +2564,7 @@ async function launchblock(arg, app) {
 function launchfusioneditor(arg, app) {
   if (arg.fusioneditor.uionly) {
     const [inputdiv, gselect, filediv, saydiv, visualdiv] = renderSandboxFormDiv(app.holder0, app.genomes);
-    import("./svmr-YVFAESAJ.js").then((p) => {
+    import("./svmr-FYHSR5A2.js").then((p) => {
       p.svmrui([null, inputdiv, gselect, filediv, saydiv, visualdiv], app.genomes, app.hostURL, arg.jwt);
     });
     return;
@@ -2574,17 +2574,17 @@ function launchfusioneditor(arg, app) {
     app.error0("Invalid genome: " + arg.genome);
     return;
   }
-  import("./svmr-YVFAESAJ.js").then((p) => {
+  import("./svmr-FYHSR5A2.js").then((p) => {
     p.svmrparseinput(arg.fusioneditor, app.error0, genomeobj2, app.holder0, app.hostURL, arg.jwt);
   });
 }
 async function launchSelectGenomeWithTklst(arg, app) {
-  const _ = await import("./selectGenomeWithTklst-XAJOWS5J.js");
+  const _ = await import("./selectGenomeWithTklst-5EGOBAEU.js");
   await _.init(arg, app.holder0, app.genomes);
 }
 function launchmavb(arg, app) {
   if (arg.mavolcanoplot.uionly) {
-    import("./mavb-JGXI2V5N.js").then((p) => {
+    import("./mavb-BKHUKZAV.js").then((p) => {
       p.mavbui(app.genomes, app.hostURL, arg.jwt, app.holder0, app.sandbox_header);
     });
     return;
@@ -2596,13 +2596,13 @@ function launchmavb(arg, app) {
   }
   arg.mavolcanoplot.hostURL = app.hostURL;
   arg.mavolcanoplot.genome = genomeobj2;
-  import("./mavb-JGXI2V5N.js").then((p) => {
+  import("./mavb-BKHUKZAV.js").then((p) => {
     p.mavbparseinput(arg.mavolcanoplot, app.error0, app.holder0, arg.jwt);
   });
 }
 function launch2dmaf(arg, app) {
   if (arg.twodmaf.uionly) {
-    import("./2dmaf-E5HYTRL4.js").then((p) => {
+    import("./2dmaf-K34DVHWJ.js").then((p) => {
       p.d2mafui(app.genomes, app.holder0);
     });
     return;
@@ -2614,20 +2614,20 @@ function launch2dmaf(arg, app) {
   }
   arg.twodmaf.hostURL = app.hostURL;
   arg.twodmaf.genome = genomeobj2;
-  import("./2dmaf-E5HYTRL4.js").then((d2maf) => {
+  import("./2dmaf-K34DVHWJ.js").then((d2maf) => {
     d2maf.d2mafparseinput(arg.twodmaf, app.holder0);
   });
 }
 function launchmaftimeline(arg, app) {
   if (arg.maftimeline.uionly) {
-    import("./maftimeline-IEYWUW6W.js").then((p) => {
+    import("./maftimeline-Y3HSIRLL.js").then((p) => {
       p.default(app.genomes, app.holder0, app.sandbox_header);
     });
   }
 }
 function launchJunctionbyMatrix(arg, app) {
   if (arg.junctionbymatrix.uionly) {
-    import("./block.tk.junction.textmatrixui-AKUCCZEF.js").then((p) => {
+    import("./block.tk.junction.textmatrixui-CPQ3V4YE.js").then((p) => {
       p.default(app.genomes, app.hostURL, arg.jwt, app.holder0);
     });
   }
@@ -2637,7 +2637,7 @@ async function launch_singlecell(arg, app) {
     const genome = app.genomes[arg.genome];
     if (!genome) throw "Invalid genome: " + arg.genome;
     arg.genome = genome;
-    const _ = await import("./singlecell-O6NJBKRT.js");
+    const _ = await import("./singlecell-QBIJOBD7.js");
     await _.init(arg, app.holder0);
   } catch (e) {
     app.error0("Error launching single cell viewer: " + e);
@@ -2646,25 +2646,25 @@ async function launch_singlecell(arg, app) {
 }
 async function launch_tkUIs(arg, app) {
   if (arg.tkui == "bigwig") {
-    const p = await import("./block.tk.bigwig.ui-5TBNTISB.js");
+    const p = await import("./block.tk.bigwig.ui-2MR2L3JB.js");
     p.bigwigUI(app.genomes, app.holder);
   }
   if (arg.tkui == "databrowser") {
-    const p = await import("./databrowser.ui-Z4KVSI5B.js");
+    const p = await import("./databrowser.ui-UARCBZGZ.js");
     p.init_databrowserUI(app.holder, app.debugmode);
   }
   if (arg.tkui == "genefusion") {
-    const p = await import("./genefusion.ui-IW42TLDI.js");
+    const p = await import("./genefusion.ui-UFKO4ANL.js");
     p.init_geneFusionUI(app.holder, app.genomes, app.debugmode);
   }
   if (arg.tkui == "disco") {
-    const p = await import("./Disco.UI-F2X3RUBK.js");
+    const p = await import("./Disco.UI-ESSJJ667.js");
     p.init_discoplotUI(app.holder, app.genomes, app.debugmode);
   }
 }
 async function launchtermdb(opts, app) {
   if (!opts.holder) opts.holder = app.holder0;
-  import("./app-QNI5FPKL.js").then((_) => {
+  import("./app-QNBZNQHD.js").then((_) => {
     _.appInit(opts);
   });
 }
@@ -2680,7 +2680,7 @@ async function launch_genefusion(arg, app) {
     });
     await getGm(m.pairlst[0].a, genome);
     await getGm(m.pairlst[0].b, genome);
-    const _ = await import("./svgraph-AXRWUY5T.js");
+    const _ = await import("./svgraph-TI7I7CU7.js");
     _.default({
       pairlst: m.pairlst,
       genome,
@@ -2717,7 +2717,7 @@ async function launchmass(arg, app) {
   opts.addLoginCallback = arg.addLoginCallback;
   opts.pkgver = app.pkgver;
   childCorsMessage(opts);
-  const _ = await import("./app-C4XKYGIR.js");
+  const _ = await import("./app-6DWGFTEB.js");
   return await _.appInit(opts);
 }
 function initgenome(g) {
@@ -2775,15 +2775,15 @@ async function launchDisco(arg, app) {
   const genomeObj = app.genomes[arg.genome];
   if (!genomeObj) throw "unknown genome";
   if (arg.disco.sample_id) {
-    const vocabApi = (await import("./vocabulary-SIJORF5B.js")).vocabInit({
+    const vocabApi = (await import("./vocabulary-YBNE26CP.js")).vocabInit({
       state: { genome: genomeObj.name, dslabel: arg.disco.dslabel }
     });
     const termdbConfig = await vocabApi.getTermdbConfig();
     const overrides = { Disco: arg.disco?.settings || {} };
-    await (await import("./plot.disco-TKAQQ55L.js")).default(termdbConfig, arg.disco.dslabel, { sample_id: arg.disco.sample_id }, app.holder, genomeObj, overrides);
+    await (await import("./plot.disco-H6LXVUJK.js")).default(termdbConfig, arg.disco.dslabel, { sample_id: arg.disco.sample_id }, app.holder, genomeObj, overrides);
     return;
   } else {
-    const _ = await import("./launch.adhoc-FH6TIDI3.js");
+    const _ = await import("./launch.adhoc-DZWJHDQH.js");
     return await _.launch(arg.disco, genomeObj, app.holder0);
   }
 }
@@ -2791,7 +2791,7 @@ async function launchWsiViewer(arg, app) {
   if (!arg.genome) throw '"genome" parameter missing';
   const genomeObj = app.genomes[arg.genome];
   if (!genomeObj) throw "unknown genome";
-  const wsiViewer = await import("./plot.wsi-JJOJ2QZG.js");
+  const wsiViewer = await import("./plot.wsi-AQHIZFJB.js");
   const urlParams = new URLSearchParams(window.location.search);
   const sampleId = urlParams.get("sample_id");
   if (!sampleId) {
@@ -2804,4 +2804,4 @@ export {
   runproteinpaint,
   bindProteinPaint
 };
-//# sourceMappingURL=chunk-ULFFSC6N.js.map
+//# sourceMappingURL=chunk-XDBGOZED.js.map

package/dist/{chunk-TINZX7UD.js → chunk-XJYLUSJH.js}

@@ -4,7 +4,7 @@ import {
 import {
   defaultUiLabels,
   fillTermWrapper
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   isDictionaryType
 } from "./chunk-YJWWWCJ6.js";
@@ -19,7 +19,7 @@ import {
 } from "./chunk-6RC5V24O.js";
 import {
   copyMerge
-} from "./chunk-VGLPN6PS.js";
+} from "./chunk-KZBB7S6A.js";
 
 // plots/matrix/matrix.config.js
 async function getPlotConfig(opts = {}, app) {
@@ -274,4 +274,4 @@ export {
   getPlotConfig,
   setComputedConfig
 };
-//# sourceMappingURL=chunk-TINZX7UD.js.map
+//# sourceMappingURL=chunk-XJYLUSJH.js.map

package/dist/{chunk-GS7QVATH.js → chunk-XNLOWBF6.js}

@@ -1,9 +1,9 @@
 import {
   sayerror
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   dofetch3
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import {
   DEFAULT_SAMPLE_TYPE,
   ROOT_SAMPLE_TYPE,
@@ -13,7 +13,7 @@ import {
 import {
   copyMerge,
   getCompInit
-} from "./chunk-VGLPN6PS.js";
+} from "./chunk-KZBB7S6A.js";
 import {
   select_default
 } from "./chunk-NDWTN4U5.js";
@@ -433,7 +433,7 @@ var SampleView = class {
         if (data.sampleDZImages?.length > 0) {
           const cellDiv = div.append("div").style("display", "inline-block");
           this.dziPlots.push({ sample, cellDiv });
-          const dziviewer = await import("./plot.dzi-MYVQVQ5P.js");
+          const dziviewer = await import("./plot.dzi-MJACI56W.js");
           dziviewer.default(state.vocab.dslabel, cellDiv, this.app.opts.genome, sample.sampleName, data.sampleDZImages);
         }
       }
@@ -444,7 +444,7 @@ var SampleView = class {
       for (const sample of samples) {
         const cellDiv = div.append("div").style("display", "inline-block");
         this.wsiPlots.push({ sample, cellDiv });
-        const wsiViewer = await import("./plot.wsi-JJOJ2QZG.js");
+        const wsiViewer = await import("./plot.wsi-AQHIZFJB.js");
         wsiViewer.default(state.vocab.dslabel, cellDiv, this.app.opts.genome, sample.sampleName);
       }
     }
@@ -456,7 +456,7 @@ var SampleView = class {
         const cellDiv = div.append("div").style("display", "inline-block");
         this.discoPlots.push({ sample, cellDiv });
         const header = cellDiv.insert("div");
-        const discoPlotImport = await import("./plot.disco-TKAQQ55L.js");
+        const discoPlotImport = await import("./plot.disco-H6LXVUJK.js");
         const found = await discoPlotImport.default(
           state.termdbConfig,
           state.vocab.dslabel,
@@ -489,7 +489,7 @@ var SampleView = class {
           this.singleSamplePlots[k].push({ sample, cellDiv: plotDiv });
           if (state.samples.length > 1)
             plotDiv.insert("div").style("font-weight", "bold").text(`${sample.sampleName} ${label}`);
-          const ssgqImport = await import("./plot.ssgq-UEIYBTLN.js");
+          const ssgqImport = await import("./plot.ssgq-GUF2P4WC.js");
           const found = await ssgqImport.plotSingleSampleGenomeQuantification(
             state.termdbConfig,
             state.vocab.dslabel,
@@ -519,7 +519,7 @@ var SampleView = class {
           this.brainPlots.push({ sample, cellDiv: plotDiv });
           if (state.samples.length > 1)
             plotDiv.insert("div").style("font-weight", "bold").style("padding-left", "20px").text(sample.sampleName);
-          const brainImagingImport = await import("./plot.brainImaging-MLSVOQBT.js");
+          const brainImagingImport = await import("./plot.brainImaging-INP467BP.js");
           brainImagingImport.default(
             state.termdbConfig,
             state.vocab.dslabel,
@@ -539,7 +539,7 @@ var SampleView = class {
         this.imagePlots.push({ sample, cellDiv });
         if (state.samples.length > 1)
           cellDiv.insert("div").style("font-weight", "bold").style("padding-left", "20px").text(sample.sampleName);
-        const imagePlotImport = await import("./imagePlot-6WTC55I7.js");
+        const imagePlotImport = await import("./imagePlot-UTTJUD4R.js");
         imagePlotImport.renderImagePlot(state, cellDiv, sample);
       }
     }
@@ -745,4 +745,4 @@ export {
   searchSampleInput,
   getSamplesRelated
 };
-//# sourceMappingURL=chunk-GS7QVATH.js.map
+//# sourceMappingURL=chunk-XNLOWBF6.js.map

package/dist/{chunk-XG4HJBT5.js → chunk-XULJ2UUC.js}

@@ -1,6 +1,6 @@
 import {
   parsesample
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import {
   dtfusionrna,
   dtsv,
@@ -273,4 +273,4 @@ export {
   parseline,
   duplicate
 };
-//# sourceMappingURL=chunk-XG4HJBT5.js.map
+//# sourceMappingURL=chunk-XULJ2UUC.js.map

package/dist/{chunk-ZQ5QFLEC.js → chunk-Y4QM3UWA.js}

@@ -2,7 +2,7 @@ import {
   getMaxLabelWidth,
   renderTable,
   table2col
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   TermTypes
 } from "./chunk-YJWWWCJ6.js";
@@ -403,4 +403,4 @@ export {
   setViolinRenderer,
   createNumericScale
 };
-//# sourceMappingURL=chunk-ZQ5QFLEC.js.map
+//# sourceMappingURL=chunk-Y4QM3UWA.js.map

package/dist/{chunk-S2HEJABN.js → chunk-YYWSZV5S.js}

@@ -1,10 +1,10 @@
 import {
   renderTable
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   clusterMethodLst,
   distanceMethodLst
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import {
   NUMERIC_DICTIONARY_TERM,
   TermTypes
@@ -479,4 +479,4 @@ export {
   setClusteringBtn,
   hierCluster_interactivity_exports
 };
-//# sourceMappingURL=chunk-S2HEJABN.js.map
+//# sourceMappingURL=chunk-YYWSZV5S.js.map

package/dist/{chunk-EIBJYYWV.js → chunk-ZMYYCORH.js}

@@ -3,19 +3,19 @@ import {
 } from "./chunk-ECRSBZLZ.js";
 import {
   hierCluster_interactivity_exports
-} from "./chunk-S2HEJABN.js";
+} from "./chunk-YYWSZV5S.js";
 import {
   Matrix
-} from "./chunk-HWBM5EIT.js";
+} from "./chunk-OM5BLCRN.js";
 import {
   filterJoin,
   getNormalRoot
-} from "./chunk-CTRQJ6M4.js";
+} from "./chunk-IKXK6WW5.js";
 import {
   clusterMethodLst,
   distanceMethodLst,
   dofetch3
-} from "./chunk-QIE5DTBW.js";
+} from "./chunk-ABMFFNR4.js";
 import {
   NUMERIC_DICTIONARY_TERM,
   TermTypes2Dt
@@ -26,7 +26,7 @@ import {
 import {
   deepEqual,
   getCompInit
-} from "./chunk-VGLPN6PS.js";
+} from "./chunk-KZBB7S6A.js";
 import {
   extent,
   linear
@@ -253,4 +253,4 @@ export {
   hierClusterInit,
   componentInit
 };
-//# sourceMappingURL=chunk-EIBJYYWV.js.map
+//# sourceMappingURL=chunk-ZMYYCORH.js.map