@sjcrh/proteinpaint-client 2.166.0 → 2.167.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-6M6QWXAQ.js +1364 -0
- package/dist/AIProjectAdmin-2NHMC3IV.js +780 -0
- package/dist/AppHeader-CTHEWSZD.js +813 -0
- package/dist/BoxPlot-3U6ZAKKO.js +44 -0
- package/dist/CorrelationVolcano-2ASIR6KY.js +616 -0
- package/dist/DifferentialAnalysis-C3NYGF7U.js +237 -0
- package/dist/Disco-2QLBZ3X5.js +3089 -0
- package/dist/Disco.UI-GPIIPM2P.js +238 -0
- package/dist/DziViewer-OHPZOH72.js +16328 -0
- package/dist/GB-FH6YQGHI.js +1099 -0
- package/dist/HicApp-TI2II3SZ.js +2218 -0
- package/dist/NumBinaryEditor-O42T63EX.js +259 -0
- package/dist/NumBinaryEditor.unit.spec-UMB2PHT5.js +277 -0
- package/dist/NumContEditor-7NOUKPCV.js +98 -0
- package/dist/NumContEditor.unit.spec-JGXJ2HLE.js +160 -0
- package/dist/NumCustomBinEditor-6CHN3KX3.js +29 -0
- package/dist/NumCustomBinEditor.unit.spec-RJPQLE3E.js +275 -0
- package/dist/NumDiscreteEditor-AFTUKU4K.js +145 -0
- package/dist/NumDiscreteEditor.unit.spec-GKR6ZNBQ.js +193 -0
- package/dist/NumRegularBinEditor-UJ5WQPHR.js +29 -0
- package/dist/NumRegularBinEditor.unit.spec-5HGJQEX7.js +220 -0
- package/dist/NumSplineEditor-JANA2DUE.js +181 -0
- package/dist/NumSplineEditor.unit.spec-UYAMAKZD.js +190 -0
- package/dist/NumericDensity-YE5R4CNP.js +29 -0
- package/dist/NumericDensity.unit.spec-SVEB5U2S.js +212 -0
- package/dist/NumericHandler-WW4M7YW2.js +30 -0
- package/dist/NumericHandler.unit.spec-2BWDFO53.js +210 -0
- package/dist/SC-UGJGMBL7.js +714 -0
- package/dist/Volcano-IU76MEIL.js +1018 -0
- package/dist/WSIViewer-3S7N4UDO.js +46959 -0
- package/dist/WsiSamplesPlot-4CAOHWCL.js +153 -0
- package/dist/adSandbox-AEBS3RTL.js +29 -0
- package/dist/alphaGenome-F2PB4SGI.js +170 -0
- package/dist/app-6SKETLMT.js +28 -0
- package/dist/app-GBEF2HBR.js +54 -0
- package/dist/app.js +16 -16
- package/dist/bam-5SE6XQJV.js +842 -0
- package/dist/barchart-AUSOT2XB.js +48 -0
- package/dist/barchart.data-GYCNBRPY.js +30 -0
- package/dist/barchart.events-QTSWNYXO.js +44 -0
- package/dist/barchart.integration.spec-LORJLJVX.js +1600 -0
- package/dist/bars.renderer-4N4QOUNI.js +12 -0
- package/dist/bars.settings-SDU7PZOS.js +10 -0
- package/dist/block-QLSIELXK.js +6291 -0
- package/dist/block.init-OOLEA6ZK.js +29 -0
- package/dist/block.mds.expressionrank-D2KUISXZ.js +350 -0
- package/dist/block.mds.geneboxplot-AMYBWXPS.js +819 -0
- package/dist/block.mds.junction-OG335MBK.js +1536 -0
- package/dist/block.mds.svcnv-WYDBQ6FV.js +6792 -0
- package/dist/block.svg-OH73245R.js +155 -0
- package/dist/block.tk.aicheck-CG5THFW2.js +274 -0
- package/dist/block.tk.ase-G2L3G5MQ.js +356 -0
- package/dist/block.tk.bam-DXWCA6EU.js +1897 -0
- package/dist/block.tk.bedgraphdot-LF3TFPNL.js +375 -0
- package/dist/block.tk.bigwig.ui-JKXZ3VDF.js +202 -0
- package/dist/block.tk.hicstraw-ZK4RKFB6.js +814 -0
- package/dist/block.tk.junction-ZB7Q2NLB.js +2355 -0
- package/dist/block.tk.junction.textmatrixui-ZYNQWKIW.js +190 -0
- package/dist/block.tk.ld-7H64HGER.js +90 -0
- package/dist/block.tk.menu-WFVKAH74.js +1020 -0
- package/dist/block.tk.pgv-632LLSBI.js +935 -0
- package/dist/brainImaging-AEPTHIQF.js +417 -0
- package/dist/chat-3XZCAFDD.js +142 -0
- package/dist/chat-3XZCAFDD.js.map +7 -0
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- package/dist/chunk-37CK5IGW.js +480 -0
- package/dist/chunk-3JFEWVHR.js +80 -0
- package/dist/chunk-3MGBC64I.js +133 -0
- package/dist/chunk-3NWLWH4G.js +6364 -0
- package/dist/chunk-46T54RUY.js +1133 -0
- package/dist/chunk-46T54RUY.js.map +7 -0
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- package/dist/frequencyChart-HBXRIBAW.js +371 -0
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- package/dist/geneExpClustering-4VD5PAWN.js +242 -0
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- /package/dist/{summary.integration.spec-GM73ERMN.js.map → summary.integration.spec-SCD35GO4.js.map} +0 -0
- /package/dist/{summaryInput-FD4SONTY.js.map → summaryInput-DMN6DTSW.js.map} +0 -0
- /package/dist/{sunburst-3LCJTBRN.js.map → sunburst-QZXYILRC.js.map} +0 -0
- /package/dist/{survival-A3A7IVXT.js.map → survival-6CWEBRSF.js.map} +0 -0
- /package/dist/{survival-XF72VMM6.js.map → survival-J657VYLI.js.map} +0 -0
- /package/dist/{survival.integration.spec-AU7MCAQV.js.map → survival.integration.spec-S5WE4V6M.js.map} +0 -0
- /package/dist/{svgraph-BEMS4JDJ.js.map → svgraph-NEKJL24M.js.map} +0 -0
- /package/dist/{svmr-CDEMTZPK.js.map → svmr-5RQ5JQF2.js.map} +0 -0
- /package/dist/{table-WYF6QCGB.js.map → table-CG6Z6NCJ.js.map} +0 -0
- /package/dist/{termCollection-BVQMNVY7.js.map → termCollection-FOQNVXB7.js.map} +0 -0
- /package/dist/{termInfo-JXLIVCSO.js.map → termInfo-5USFZGDB.js.map} +0 -0
- /package/dist/{tk-TGIIJYBO.js.map → tk-2O7XOVGJ.js.map} +0 -0
- /package/dist/{tp.ui-USYF67P7.js.map → tp.ui-S4YUVCZH.js.map} +0 -0
- /package/dist/{tvs.dtcnv.continuous-7SCTSFK3.js.map → tvs.dtcnv.continuous-7BPIXZ6C.js.map} +0 -0
- /package/dist/{tvs.numeric-OLVW6US3.js.map → tvs.numeric-FCC2EY62.js.map} +0 -0
- /package/dist/{tvs.samplelst-BHZHCX5V.js.map → tvs.samplelst-PKGFTULN.js.map} +0 -0
- /package/dist/{violin-OEOWVIZF.js.map → violin-C7IBRTYP.js.map} +0 -0
- /package/dist/{violin.integration.spec-AW2U3RHO.js.map → violin.integration.spec-WXRD3Z4E.js.map} +0 -0
- /package/dist/{violin.interactivity-3O2UDNPQ.js.map → violin.interactivity-BMG4TG5L.js.map} +0 -0
- /package/dist/{violin.renderer-W26FA6M7.js.map → violin.renderer-WUNW6ULV.js.map} +0 -0
- /package/dist/{vocabulary-BIQYDKVY.js.map → vocabulary-UUNEEBM3.js.map} +0 -0
package/dist/chunk-OS46MR72.js
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import {
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fillTermWrapper,
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termsettingInit
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} from "./chunk-UT6W4ZZL.js";
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import {
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isNumericTerm
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} from "./chunk-RYRCMHYR.js";
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import {
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select_default
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} from "./chunk-NDWTN4U5.js";
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// plots/matrix/matrix.renderers.js
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function setRenderers(self) {
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self.render = function() {
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const s = self.settings.matrix;
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const l = self.layout;
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const d = self.dimensions;
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const duration = self.dom.svg.attr("width") ? s.duration : 0;
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self.dom.clipRect.attr("x", d.xOffset - 1).attr("y", 0).attr("width", d.mainw + 3).attr("height", d.mainh + 500);
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self.renderSerieses(s, l, d, duration);
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self.renderLabels(s, l, d, duration);
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self.renderDivideByLabel(s, l, d, duration);
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self.dom.colBeam.attr("width", d.dx).attr("height", d.mainh).style("stroke", s.beamStroke);
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self.dom.rowBeam.attr("width", d.zoomedMainW).attr("height", s.rowh).style("stroke", s.beamStroke);
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};
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self.renderSerieses = function(s, l, d, duration) {
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if (self.prevUseCanvas != s.useCanvas) {
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self.dom.seriesesG.selectAll("g").remove();
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}
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if (s.useCanvas) {
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const _g = self.dom.seriesesG.selectAll("g");
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const g = (
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/*(_g.size() && _g) ||*/
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self.dom.seriesesG.append("g").datum(this.serieses)
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);
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self.renderCanvas(this.serieses, g, d, s, _g, duration);
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} else {
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self.dom.seriesesG.attr("transform", `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`);
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const sg = self.dom.seriesesG.selectAll(".sjpp-mass-series-g").data(this.serieses, (series) => series.tw.$id);
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sg.exit().remove();
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sg.each(self.renderSeries);
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sg.enter().append("g").attr("class", "sjpp-mass-series-g").style("opacity", 1e-3).each(self.renderSeries);
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self.mouseout();
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}
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self.prevUseCanvas = s.useCanvas;
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};
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self.renderSeries = async function(series) {
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const s = self.settings.matrix;
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const d = self.dimensions;
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const g = select_default(this);
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const duration = g.attr("transform") ? s.duration : 0;
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g.attr("transform", `translate(${series.x},${series.y})`).style("opacity", 1);
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const last = series.cells[series.cells.length - 1];
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const height = series.y + last?.y + s.rowh;
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const rects = g.selectAll("rect").data(series.cells, (cell) => cell.sample + ";;" + cell.tw.$id + ";;" + cell.valueIndex);
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rects.exit().remove();
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rects.each(self.renderCell);
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rects.enter().append("rect").each(self.renderCell);
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};
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self.renderCanvas = async function(serieses, g, d, s, _g, duration) {
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const pxr = window.devicePixelRatio <= 1 ? 1 : window.devicePixelRatio;
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g.selectAll("*").remove();
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const width = d.imgW;
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const height = self.dimensions.mainh;
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const canvas = window.OffscreenCanvas ? new OffscreenCanvas(width * pxr, height * pxr) : (
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// TODO: no need to support older browser versions???
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self.dom.holder.append("canvas").attr("width", pxr * width).attr("height", pxr * height).style("opacity", 0).node()
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);
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const ctx = canvas.getContext("2d");
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ctx.imageSmoothingEnabled = false;
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ctx.imageSmoothingQuality = "high";
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ctx.scale(pxr, pxr);
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for (const series of serieses) {
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for (const cell of series.cells) {
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self.renderCellWithCanvas(ctx, cell, series, s, d, series.y);
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}
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}
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if (window.OffscreenCanvas) {
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const reader = new FileReader();
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reader.addEventListener(
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"load",
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() => {
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_g?.remove();
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self.dom.seriesesG.attr("transform", `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`);
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g.selectAll("image").remove();
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g.append("image").attr("xlink:href", reader.result).attr("x", d.xMin).attr("width", width).attr("height", height);
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},
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false
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);
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const blob = await canvas.convertToBlob({ quality: 1 });
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const dataURL = reader.readAsDataURL(blob);
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} else {
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_g?.remove();
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self.dom.seriesesG.attr("transform", `translate(${d.xOffset + d.seriesXoffset},${d.yOffset})`);
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const dataURL = canvas.toDataURL();
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const ratio = window.devicePixelRatio * window.devicePixelRatio;
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g.append("image").attr("width", width).attr("height", height).attr("xlink:href", dataURL);
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if (!window.OffscreenCanvas) canvas.remove();
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}
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self.mouseout();
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};
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self.renderCellWithCanvas = function(ctx, cell, series, s, d, _y) {
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if (!cell.fill)
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cell.fill = cell.$id in self.colorScaleByTermId ? self.colorScaleByTermId[cell.$id](cell.key) : getRectFill(cell);
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const x = cell.x ? cell.x - d.xMin : 0;
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const y = _y ? _y + cell.y : cell.y || 0;
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const width = s.useMinPixelWidth ? Math.max(cell.width || d.colw, d.pxw) : cell.width || d.colw;
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const height = "height" in cell ? cell.height : s.rowh;
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ctx.fillStyle = cell.fill;
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ctx.fillRect(x, y, width, height);
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const borderWidth = Math.min(width, height) * 0.1;
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if (cell.border) {
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ctx.lineWidth = borderWidth;
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ctx.strokeStyle = "white";
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ctx.strokeRect(x, y, width, height);
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}
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};
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self.renderCell = function(cell) {
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if (!cell.fill)
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cell.fill = cell.$id in self.colorScaleByTermId ? self.colorScaleByTermId[cell.$id](cell.key) : getRectFill(cell);
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const s = self.settings.matrix;
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const rect = select_default(this).attr("x", cell.x || 0).attr("y", cell.y || 0).attr("width", cell.width || self.dimensions.colw).attr("height", "height" in cell ? Math.max(0, cell.height) : s.rowh).attr("shape-rendering", "crispEdges").attr("fill", cell.fill);
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if (cell.border) {
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rect.attr("stroke", "white").attr("stroke-width", 0.8);
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}
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};
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self.renderLabels = function(s, l, d, duration) {
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for (const direction of ["top", "btm", "left", "right"]) {
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let renderLabel2 = function(lab) {
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const g = select_default(this);
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g.attr("transform", side.attr.labelGTransform);
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if (!g.select(":scope>text").size()) g.append("text");
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const showContAxis = !side.isGroup && lab.grp?.type !== "hierCluster" && lab.tw?.q?.mode == "continuous";
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const labelText = side.label(lab);
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const text = g.select(":scope>text").attr("fill", "#000");
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let continuousBarHAdjust;
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const twSpecificSettings = self.config.settings.matrix.twSpecificSettings;
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const twSettingsBarH = twSpecificSettings[lab.tw?.$id]?.contBarH;
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if (twSettingsBarH && s.barh) continuousBarHAdjust = (twSettingsBarH - s.barh) * 0.5;
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text.attr(
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"display",
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lab.grp?.type === "hierCluster" && s.clusterRowh < 6 ? "none" : side.attr.fontSize < 6 || labelText === "configure" ? "none" : ""
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).attr("font-size", lab.grp?.type === "hierCluster" ? Math.max(4, s.clusterRowh - 4) : side.attr.fontSize).attr("text-anchor", side.attr.labelAnchor).attr(
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"transform",
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side.attr.labelTransform + (continuousBarHAdjust ? ` translate(0,${continuousBarHAdjust})` : "")
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).attr("cursor", "pointer").attr(side.attr.textpos.coord, side.attr.textpos.factor * (showContAxis ? 30 : 0));
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if (!Array.isArray(labelText)) {
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text.text(labelText);
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text.attr(
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"y",
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lab.grp?.type !== "hierCluster" && lab.tw?.q?.mode == "continuous" ? 10 : lab.grp?.type === "hierCluster" ? 0.1 * s.clusterRowh : 0
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);
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if (lab.grp?.type !== "hierCluster" && lab.tw?.q?.mode == "continuous") text.attr("x", -20);
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} else {
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text.text("");
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const tspan = text.selectAll("tspan").data(labelText);
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tspan.enter().append("tspan").attr("class", getTspanCls2).attr("dx", getTspanDx2).attr("font-size", getTspanFontSize2).text(getTspanText2);
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}
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text.on("mouseover", labelText === "configure" ? () => text.attr("opacity", 0.5) : null).on("mouseout", labelText === "configure" ? () => text.attr("opacity", 0) : null);
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const hasAxis = g.select(".sjpp-matrix-cell-axis").size() && true;
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if (showContAxis && labelText) {
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if (!hasAxis) {
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g.append("g").attr("class", "sjpp-matrix-cell-axis").attr("shape-rendering", "crispEdges");
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}
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const axisg = g.select(".sjpp-matrix-cell-axis");
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axisg.selectAll("*").remove();
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const domain = [lab.counts.maxval, lab.counts.minval];
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if (s.transpose) domain.reverse();
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const twSpecificSettings2 = self.config.settings.matrix.twSpecificSettings;
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const twSettings = twSpecificSettings2[lab.tw.$id];
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const x = !s.transpose ? 0 : twSettings.contBarGap - 1 - lab.labelOffset;
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const y = !s.transpose ? twSettings.contBarGap - 1 - lab.labelOffset : 0;
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axisg.attr("shape-rendering", "crispEdges").attr("transform", `translate(${x},${y})`).call(side.attr.axisFxn(lab.scales.full.domain(lab.scales.tickValues)).tickValues(lab.scales.tickValues));
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} else if (hasAxis) {
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g.select(".sjpp-matrix-cell-axis").remove();
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}
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}, getTspanCls2 = function(d2) {
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return d2.cls;
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}, getTspanDx2 = function(d2) {
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return d2.dx;
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}, getTspanFontSize2 = function(d2) {
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return d2.fontSize || side.attr.fontSize;
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}, getTspanText2 = function(d2) {
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return d2.text;
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};
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var renderLabel = renderLabel2, getTspanCls = getTspanCls2, getTspanDx = getTspanDx2, getTspanFontSize = getTspanFontSize2, getTspanText = getTspanText2;
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const side = l[direction];
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side.box.style("display", side.display || "").attr("transform", side.attr.boxTransform);
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const labels = side.box.selectAll(".sjpp-matrix-label").data(side.data, side.key);
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labels.exit().remove();
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labels.each(renderLabel2);
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labels.enter().append("g").attr("class", "sjpp-matrix-label").each(renderLabel2);
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}
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};
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self.colLabelGTransform = (lab, grpIndex) => {
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const s = self.settings.matrix;
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const d = self.dimensions;
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lab.labelOffset = 0.8 * d.colw;
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const x = lab.grpIndex * s.colgspace + lab.totalIndex * d.dx + lab.labelOffset + lab.totalHtAdjustments;
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const y = 0;
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return `translate(${x + d.seriesXoffset},${y})`;
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};
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self.colGrpLabelGTransform = (lab, grpIndex) => {
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const s = self.settings.matrix;
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const d = self.dimensions;
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const len = (lab.processedLst || lab.grp.lst).length;
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const x = lab.grpIndex * s.colgspace + lab.prevGrpTotalIndex * d.dx + len * d.dx / 2 + s.grpLabelFontSize / 2 + lab.totalHtAdjustments;
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return `translate(${x + d.seriesXoffset},0)`;
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};
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self.rowLabelGTransform = (lab, grpIndex) => {
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const s = self.settings.matrix;
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const d = self.dimensions;
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const x = 0;
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lab.labelOffset = 0.7 * (lab.grp.type == "hierCluster" ? s.clusterRowh : s.rowh);
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const y = lab.grpIndex * s.rowgspace + lab.totalIndex * d.dy + lab.labelOffset + lab.totalHtAdjustments;
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return `translate(${x},${y})`;
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};
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self.rowGrpLabelGTransform = (lab, grpIndex) => {
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const s = self.settings.matrix;
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const d = self.dimensions;
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const len = (lab.processedLst || lab.grp.lst).length;
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const x = lab.tw?.q?.mode == "continuous" ? 20 : 0;
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const y = lab.grpIndex * s.rowgspace + lab.prevGrpTotalIndex * d.dy + len * d.dy / 2 + s.grpLabelFontSize / 2 + lab.totalHtAdjustments;
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return `translate(${x},${y})`;
|
|
225
|
-
};
|
|
226
|
-
self.rowAxisGTransform = (lab, grpIndex) => {
|
|
227
|
-
const s = self.settings.matrix;
|
|
228
|
-
const d = self.dimensions;
|
|
229
|
-
const x = 0;
|
|
230
|
-
const y = lab.grpIndex * s.rowgspace + lab.totalIndex * d.dy + 0.7 * s.rowh + lab.totalHtAdjustments;
|
|
231
|
-
return `translate(${x},${y})`;
|
|
232
|
-
};
|
|
233
|
-
self.renderDivideByLabel = async (s, l, d) => {
|
|
234
|
-
self.dom.mainG.selectAll(".sjpp-matrix-divide-by-label").remove();
|
|
235
|
-
if (!self.config.divideBy) return;
|
|
236
|
-
const name = self.config.divideBy?.term.name || "";
|
|
237
|
-
const text = name.length <= s.rowlabelmaxchars ? name : name.slice(0, s.rowlabelmaxchars) + "\u2026";
|
|
238
|
-
const sides = !s.transpose ? [l.left, l.right] : [l.top, l.bottom];
|
|
239
|
-
const box = sides.find((d2) => !d2.isGroup)?.box;
|
|
240
|
-
const y = (s.collabelpos == "top" ? d.mainh + s.collabelmaxchars : -s.collabelmaxchars) + 8;
|
|
241
|
-
const anchor = s.rowlabelpos == "left" ? "end" : "start";
|
|
242
|
-
const cl = s.controlLabels;
|
|
243
|
-
const gNote = box.append("g").attr("class", "sjpp-matrix-divide-by-label").attr("transform", `translate(0, ${y})`);
|
|
244
|
-
gNote.append("text").attr("text-anchor", anchor).attr("font-style", "italic").attr("y", -20).text(`${cl.Samples} grouped by`);
|
|
245
|
-
const g = box.datum({ tw: self.config.divideBy }).append("g").attr("class", "sjpp-matrix-divide-by-label").attr("transform", `translate(0, ${y})`).on("click", (event, d2) => {
|
|
246
|
-
pill.showMenu(event, textElem.node());
|
|
247
|
-
});
|
|
248
|
-
const textElem = g.append("text").attr("text-anchor", anchor).attr("font-weight", 600).text(text);
|
|
249
|
-
g.append("title").text(`${cl.Samples} are grouped by this gene or variable. Click to edit.`);
|
|
250
|
-
const customMenuOptions = [];
|
|
251
|
-
const tvsKey = isNumericTerm(self.config.divideBy.term) ? "ranges" : "values";
|
|
252
|
-
if (self.config.legendValueFilter.lst?.find(
|
|
253
|
-
(l2) => l2.legendGrpName == self.config.divideBy.term.id || l2.legendGrpName == self.config.divideBy.term.name
|
|
254
|
-
)?.tvs[tvsKey]?.length) {
|
|
255
|
-
customMenuOptions.push({ label: `Show filtered ${cl.samples}`, callback: self.showDeletedSampleGroups });
|
|
256
|
-
}
|
|
257
|
-
const pill = await termsettingInit({
|
|
258
|
-
menuOptions: "{edit,replace,remove}",
|
|
259
|
-
//numericEditMenuVersion: opts.numericEditMenuVersion,
|
|
260
|
-
customMenuOptions,
|
|
261
|
-
//custom menu options other than menuOptions
|
|
262
|
-
vocabApi: self.app.vocabApi,
|
|
263
|
-
vocab: self.state.vocab,
|
|
264
|
-
//activeCohort: opts.state?.activeCohort,
|
|
265
|
-
holder: g,
|
|
266
|
-
debug: self.opts.debug,
|
|
267
|
-
usecase: { target: "matrix" },
|
|
268
|
-
getBodyParams: () => {
|
|
269
|
-
const currentGeneNames = self.termOrder.filter((t) => t.tw.term.type === "geneVariant").map(
|
|
270
|
-
(t) => t.tw.term.chr ? `${t.tw.term.chr}:${t.tw.term.start}-${t.tw.term.stop}` : t.tw.term.gene || t.tw.term.name
|
|
271
|
-
);
|
|
272
|
-
if (currentGeneNames.length) return { currentGeneNames };
|
|
273
|
-
return {};
|
|
274
|
-
},
|
|
275
|
-
callback: async (tw) => {
|
|
276
|
-
if (self.dom.loadingDiv && self.dom.svg) {
|
|
277
|
-
self.dom.loadingDiv.selectAll("*").remove();
|
|
278
|
-
self.dom.loadingDiv.html("").style("display", "").style("position", "relative").style("left", "45%");
|
|
279
|
-
self.dom.loadingDiv.html("Processing data ...");
|
|
280
|
-
self.dom.svg.style("opacity", 0.1).style("pointer-events", "none");
|
|
281
|
-
}
|
|
282
|
-
if (tw && !tw.q) throw "data.q{} missing from pill callback";
|
|
283
|
-
if (tw?.term && isNumericTerm(tw.term)) {
|
|
284
|
-
tw.q = { ...tw.q, mode: "discrete" };
|
|
285
|
-
}
|
|
286
|
-
if (tw) await fillTermWrapper(tw, self.app.vocabApi);
|
|
287
|
-
await pill.main(tw ? tw : { term: null, q: null });
|
|
288
|
-
box.datum({ tw });
|
|
289
|
-
self.app.dispatch({
|
|
290
|
-
type: "plot_edit",
|
|
291
|
-
id: self.id,
|
|
292
|
-
config: {
|
|
293
|
-
divideBy: tw,
|
|
294
|
-
legendValueFilter: self.mayRemoveTvsEntry(self.config.divideBy)
|
|
295
|
-
}
|
|
296
|
-
});
|
|
297
|
-
}
|
|
298
|
-
});
|
|
299
|
-
const arg = {
|
|
300
|
-
term: self.config.divideBy.term,
|
|
301
|
-
q: self.config.divideBy.q
|
|
302
|
-
};
|
|
303
|
-
if (self.config.divideBy.$id) arg.$id = self.config.divideBy.$id;
|
|
304
|
-
pill.main(arg);
|
|
305
|
-
};
|
|
306
|
-
self.adjustSvgDimensions = async function(prevTranspose) {
|
|
307
|
-
const s = self.settings.matrix;
|
|
308
|
-
const hc = self.settings.hierCluster || {};
|
|
309
|
-
const hcHeight = hc.yDendrogramHeight || 0;
|
|
310
|
-
const hcWidth = hc.xDendrogramHeight || 0;
|
|
311
|
-
const d = self.dimensions;
|
|
312
|
-
const duration = self.dom.svg.attr("width") ? s.duration : 0;
|
|
313
|
-
await sleep(prevTranspose == s.transpose ? duration : s.duration);
|
|
314
|
-
const l = self.layout;
|
|
315
|
-
const topBox = l.top.box.node().getBBox();
|
|
316
|
-
const btmBox = l.btm.box.node().getBBox();
|
|
317
|
-
const leftBox = l.left.box.node().getBBox();
|
|
318
|
-
const rtBox = l.right.box.node().getBBox();
|
|
319
|
-
const legendBox = self.dom.legendG.node().getBBox();
|
|
320
|
-
const seriesBox = self.dom.seriesesG.node().getBBox();
|
|
321
|
-
d.extraWidth = leftBox.width + rtBox.width + s.margin.left + s.margin.right + s.rowlabelgap * 2;
|
|
322
|
-
d.extraHeight = topBox.height + btmBox.height + s.margin.top + s.margin.bottom + s.collabelgap * 2;
|
|
323
|
-
d.svgw = d.mainw + d.extraWidth + hcWidth;
|
|
324
|
-
d.svgh = d.mainh + d.extraHeight + legendBox.height + 20 + s.scrollHeight + hcHeight;
|
|
325
|
-
self.dom.svg.attr("width", d.svgw).attr("height", d.svgh);
|
|
326
|
-
let maxLabelWidth = self.type == "hierCluster" ? 0 : leftBox.width, maxLabelNumChars = 0;
|
|
327
|
-
if (hc.xDendrogramHeight) {
|
|
328
|
-
self.dom.termLabelG.selectAll(".sjpp-matrix-label").each(function(d2) {
|
|
329
|
-
if (d2.grp.type !== "hierCluster") return;
|
|
330
|
-
const box = this.getBBox();
|
|
331
|
-
if (box.width > maxLabelWidth) {
|
|
332
|
-
maxLabelWidth = box.width;
|
|
333
|
-
maxLabelNumChars = d2.label.length;
|
|
334
|
-
}
|
|
335
|
-
});
|
|
336
|
-
}
|
|
337
|
-
const x = -l.left.offset + hcWidth + maxLabelWidth;
|
|
338
|
-
const xAdjust = !hc.xDendrogramHeight ? 0 : Math.max(leftBox.width - (hc.xDendrogramHeight + maxLabelWidth), 0);
|
|
339
|
-
const y = (l.top.display == "none" ? 0 : topBox.height) - l.top.offset + hcHeight;
|
|
340
|
-
self.dom.mainG.attr("transform", `translate(${x + xAdjust},${y})`);
|
|
341
|
-
self.dom.clipRect.attr("y", -y).attr("height", d.mainh + 500 + y);
|
|
342
|
-
const legendX = d.xOffset + (s.transpose ? 20 : 0);
|
|
343
|
-
const legendY = d.yOffset + d.mainh + s.collabelgap + (l.btm.display == "none" ? 0 : btmBox.height) + 20;
|
|
344
|
-
self.dom.legendG.attr("transform", `translate(${legendX},${legendY})`);
|
|
345
|
-
if (hc.xDendrogramHeight) {
|
|
346
|
-
const dendroX = maxLabelWidth + xAdjust - l.left.offset + d.xOffset - d.dx / 2;
|
|
347
|
-
self.dom.hcClipRect.attr("x", dendroX + hcWidth + d.dx / 2).attr("y", 0).attr("width", d.mainw + 3).attr("height", d.mainh + hc.yDendrogramHeight + 500);
|
|
348
|
-
self.topDendroX = dendroX + d.seriesXoffset;
|
|
349
|
-
self.dom.topDendrogram.attr("transform", `translate(${self.topDendroX}, 0)`);
|
|
350
|
-
const y2 = l.top.display == "none" ? 0 : topBox.height + s.collabelgap;
|
|
351
|
-
self.dom.leftDendrogram.attr("transform", `translate(${dendroX - maxLabelWidth - 10}, ${y2})`);
|
|
352
|
-
}
|
|
353
|
-
};
|
|
354
|
-
}
|
|
355
|
-
function getRectFill(d) {
|
|
356
|
-
if (d.fill) return d.fill;
|
|
357
|
-
const cls = d.class || Array.isArray(d.values) && d.values[0].class;
|
|
358
|
-
if (!cls) console.log;
|
|
359
|
-
return cls ? mclass[cls].color : "#555";
|
|
360
|
-
}
|
|
361
|
-
function sleep(ms) {
|
|
362
|
-
return new Promise((resolve) => setTimeout(resolve, ms));
|
|
363
|
-
}
|
|
364
|
-
|
|
365
|
-
export {
|
|
366
|
-
setRenderers
|
|
367
|
-
};
|
|
368
|
-
//# sourceMappingURL=chunk-OS46MR72.js.map
|
package/dist/chunk-PBJFLQGL.js
DELETED
|
@@ -1,142 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
deepEqual,
|
|
3
|
-
deepFreeze,
|
|
4
|
-
getCompInit
|
|
5
|
-
} from "./chunk-FYTZCTJC.js";
|
|
6
|
-
|
|
7
|
-
// rx/src/recover.js
|
|
8
|
-
var Recover = class {
|
|
9
|
-
constructor(opts = {}) {
|
|
10
|
-
this.type = "recover";
|
|
11
|
-
this.initialHolderDisplay = opts.holder.style("display");
|
|
12
|
-
this.dom = {
|
|
13
|
-
holder: opts.holder,
|
|
14
|
-
btnDiv: opts.holder.append("div").style("position", "sticky").style("top", "12px").style("right", "20px").style("margin", opts.margin ? opts.margin : "10px").style("text-align", "right")
|
|
15
|
-
};
|
|
16
|
-
this.hasStatePreMain = true;
|
|
17
|
-
this.reactsTo = opts.reactsTo || (() => true);
|
|
18
|
-
this.getState = opts.getState || ((appState) => appState);
|
|
19
|
-
this.debouncedTrack = () => {
|
|
20
|
-
this.trackPending = true;
|
|
21
|
-
this.trackState();
|
|
22
|
-
this.render();
|
|
23
|
-
};
|
|
24
|
-
this.wait = "wait" in opts ? opts.wait : 800;
|
|
25
|
-
this.maxHistoryLen = opts.maxHistoryLen || 10;
|
|
26
|
-
}
|
|
27
|
-
preApiFreeze(api) {
|
|
28
|
-
api.replaceLastState = (appState) => {
|
|
29
|
-
if (this.isRecovering) return;
|
|
30
|
-
this.state = this.getState(appState);
|
|
31
|
-
if (!this.trackPending) this.history[this.currIndex] = this.state;
|
|
32
|
-
};
|
|
33
|
-
}
|
|
34
|
-
init() {
|
|
35
|
-
this.app.register(this.api);
|
|
36
|
-
this.currIndex = -1;
|
|
37
|
-
this.history = [];
|
|
38
|
-
this.isActive = !isNaN(this.maxHistoryLen) && +this.maxHistoryLen > 0;
|
|
39
|
-
if (this.isActive) {
|
|
40
|
-
setRenderers(this);
|
|
41
|
-
this.initUi();
|
|
42
|
-
}
|
|
43
|
-
this.eventTypes = ["postInit", "postRender"];
|
|
44
|
-
}
|
|
45
|
-
async main() {
|
|
46
|
-
if (!this.isActive) return;
|
|
47
|
-
if (this.opts.hide?.(this.state)) {
|
|
48
|
-
this.dom.holder.style("display", "none");
|
|
49
|
-
return;
|
|
50
|
-
}
|
|
51
|
-
this.dom.holder.style("display", this.initialHolderDisplay || "");
|
|
52
|
-
if (!this.timedTrack) {
|
|
53
|
-
this.trackState();
|
|
54
|
-
this.trackPending = true;
|
|
55
|
-
this.timedTrack = setTimeout(() => {
|
|
56
|
-
}, this.wait);
|
|
57
|
-
return;
|
|
58
|
-
}
|
|
59
|
-
clearTimeout(this.timedTrack);
|
|
60
|
-
this.trackPending = true;
|
|
61
|
-
this.timedTrack = setTimeout(this.debouncedTrack, this.wait);
|
|
62
|
-
}
|
|
63
|
-
trackState() {
|
|
64
|
-
if (this.isRecovering) {
|
|
65
|
-
this.isRecovering = false;
|
|
66
|
-
return;
|
|
67
|
-
}
|
|
68
|
-
if (this.state._scope_ == "none") return;
|
|
69
|
-
this.isRecovering = false;
|
|
70
|
-
const state = this.opts.adjustTrackedState ? this.opts.adjustTrackedState(this.state) : this.state;
|
|
71
|
-
if (!state) {
|
|
72
|
-
console.error("no state to track");
|
|
73
|
-
return;
|
|
74
|
-
}
|
|
75
|
-
if (!Object.isFrozen(state)) deepFreeze(state);
|
|
76
|
-
if (this.currIndex == -1) this.origState = state;
|
|
77
|
-
if (this.currIndex < this.history.length - 1) {
|
|
78
|
-
this.history.splice(this.currIndex, this.history.length - (this.currIndex + 1));
|
|
79
|
-
}
|
|
80
|
-
if (deepEqual(state, this.history[this.history.length - 1])) return;
|
|
81
|
-
this.history.push(state);
|
|
82
|
-
this.currIndex += 1;
|
|
83
|
-
if (this.history.length > this.maxHistoryLen) {
|
|
84
|
-
this.history.splice(1, 1);
|
|
85
|
-
this.currIndex += -1;
|
|
86
|
-
}
|
|
87
|
-
this.trackPending = false;
|
|
88
|
-
}
|
|
89
|
-
goto(i) {
|
|
90
|
-
if (i < 0 && this.currIndex + i > -1) this.currIndex += i;
|
|
91
|
-
else if (i > 0 && this.currIndex + i < this.history.length) this.currIndex += i;
|
|
92
|
-
else return;
|
|
93
|
-
this.isRecovering = true;
|
|
94
|
-
const state = this.history[this.currIndex];
|
|
95
|
-
this.render();
|
|
96
|
-
if (this.opts.plot_id) {
|
|
97
|
-
const copy = structuredClone(state);
|
|
98
|
-
this.app.dispatch({ type: "plot_edit", id: this.opts.plot_id, config: copy.config, _scope_: copy._scope_ });
|
|
99
|
-
} else {
|
|
100
|
-
this.app.dispatch({ type: "app_refresh", state });
|
|
101
|
-
}
|
|
102
|
-
}
|
|
103
|
-
reset() {
|
|
104
|
-
this.currIndex = 0;
|
|
105
|
-
this.isRecovering = true;
|
|
106
|
-
const state = this.origState;
|
|
107
|
-
if (this.opts.plot_id) {
|
|
108
|
-
const config = state.plots.find((p) => p.id === this.opts.plot_id);
|
|
109
|
-
this.app.dispatch({ type: "plot_edit", id: this.opts.plot_id, config: structuredClone(config) });
|
|
110
|
-
} else this.app.dispatch({ type: "app_refresh", state });
|
|
111
|
-
}
|
|
112
|
-
};
|
|
113
|
-
var recoverInit = getCompInit(Recover);
|
|
114
|
-
function setRenderers(self) {
|
|
115
|
-
self.initUi = function() {
|
|
116
|
-
self.dom.undoBtn = self.dom.btnDiv.append("button").attr("aria-label", "Undo the previous action").property("disabled", true).style("margin", "0 0 0 4px").style("border", "1px solid #ccc").style("vertical-align", "middle").html(
|
|
117
|
-
self.opts.undoHtml || `<svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="#000" class="bi bi-arrow-counterclockwise" viewBox="0 0 16 16" style='vertical-align: middle'>
|
|
118
|
-
<path stroke='#000' stroke-width='0.25' fill-rule="evenodd" d="M8 3a5 5 0 1 1-4.546 2.914.5.5 0 0 0-.908-.417A6 6 0 1 0 8 2v1z"/>
|
|
119
|
-
<path d="M8 4.466V.534a.25.25 0 0 0-.41-.192L5.23 2.308a.25.25 0 0 0 0 .384l2.36 1.966A.25.25 0 0 0 8 4.466z"/>
|
|
120
|
-
</svg>`
|
|
121
|
-
).on("click", () => self.goto(-1));
|
|
122
|
-
self.dom.redoBtn = self.dom.btnDiv.append("button").attr("aria-label", "Redo a subsequent action").property("disabled", true).style("margin", self.opts.resetHtml ? "0" : "0 4px 0 0").style("border", "1px solid #ccc").style("vertical-align", "middle").html(
|
|
123
|
-
self.opts.redoHtml || `<svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="#000" class="bi bi-arrow-clockwise" viewBox="0 0 16 16" style='vertical-align: middle'>
|
|
124
|
-
<path stroke='#000' stroke-width='0.25' fill-rule="evenodd" d="M8 3a5 5 0 1 0 4.546 2.914.5.5 0 0 1 .908-.417A6 6 0 1 1 8 2v1z"/>
|
|
125
|
-
<path d="M8 4.466V.534a.25.25 0 0 1 .41-.192l2.36 1.966c.12.1.12.284 0 .384L8.41 4.658A.25.25 0 0 1 8 4.466z"/>
|
|
126
|
-
</svg>`
|
|
127
|
-
).on("click", () => self.goto(1));
|
|
128
|
-
if (self.opts.resetHtml)
|
|
129
|
-
self.dom.resetBtn = self.dom.btnDiv.append("button").attr("aria-label", "Restore the initial rendered state").property("disabled", true).style("margin", "0 4px 0 0").style("border", "1px solid #ccc").style("vertical-align", "middle").html(self.opts.resetHtml).on("click", () => self.reset());
|
|
130
|
-
};
|
|
131
|
-
self.render = function() {
|
|
132
|
-
if (self.dom.undoBtn) self.dom.undoBtn.property("disabled", self.currIndex < 1 || self.history.length === 1);
|
|
133
|
-
if (self.dom.redoBtn)
|
|
134
|
-
self.dom.redoBtn.property("disabled", self.history.length < 2 || self.currIndex >= self.history.length - 1);
|
|
135
|
-
if (self.dom.resetBtn) self.dom.resetBtn.property("disabled", self.currIndex === 0);
|
|
136
|
-
};
|
|
137
|
-
}
|
|
138
|
-
|
|
139
|
-
export {
|
|
140
|
-
recoverInit
|
|
141
|
-
};
|
|
142
|
-
//# sourceMappingURL=chunk-PBJFLQGL.js.map
|