@sienklogic/plan-build-run 2.1.0 → 2.1.1

package/plan-build-run/bin/lib/phase.cjs

@@ -0,0 +1,1021 @@
+/**
+ * lib/phase.cjs — Phase operations for Plan-Build-Run tools.
+ *
+ * Handles phase directory management (add/remove/list), plan indexing,
+ * must-haves collection, comprehensive phase info, milestone stats,
+ * and commit tracking (commits-for, first-last-commit).
+ *
+ * Hybrid module merging PBR reference features with GSD-unique utilities.
+ */
+
+const fs = require('fs');
+const path = require('path');
+const {
+  parseYamlFrontmatter,
+  findFiles,
+  countMustHaves,
+  determinePhaseStatus,
+  lockedFileUpdate
+} = require('./core.cjs');
+const { stateUpdate, statePatch, stateUpdateProgress, updateFrontmatterField } = require('./state.cjs');
+const {
+  roadmapAppendPhase,
+  roadmapRemovePhase,
+  roadmapRenumberPhases
+} = require('./roadmap.cjs');
+
+/**
+ * Parse a markdown file's YAML frontmatter and return as JSON.
+ * Wraps parseYamlFrontmatter().
+ *
+ * @param {string} filePath - Path to markdown file
+ * @returns {object} Parsed frontmatter or error
+ */
+function frontmatter(filePath) {
+  const resolved = path.resolve(filePath);
+  if (!fs.existsSync(resolved)) {
+    return { error: `File not found: ${resolved}` };
+  }
+  const content = fs.readFileSync(resolved, 'utf8');
+  return parseYamlFrontmatter(content);
+}
+
+/**
+ * Plan inventory for a phase, grouped by wave.
+ *
+ * @param {string} phaseNum - Phase number
+ * @param {string} [planningDir] - Path to .planning directory
+ * @returns {object} Plan index
+ */
+function phasePlanIndex(phaseNum, planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const phasesDir = path.join(dir, 'phases');
+  if (!fs.existsSync(phasesDir)) {
+    return { error: 'No phases directory found' };
+  }
+
+  // Find phase directory matching the number
+  const entries = fs.readdirSync(phasesDir, { withFileTypes: true })
+    .filter(e => e.isDirectory());
+
+  const phaseDir = entries.find(e => e.name.startsWith(String(phaseNum).padStart(2, '0') + '-'));
+  if (!phaseDir) {
+    return { error: `No phase directory found matching phase ${phaseNum}` };
+  }
+
+  const fullDir = path.join(phasesDir, phaseDir.name);
+  // Match both {NN}-{MM}-PLAN.md (canonical) and PLAN-NN.md / PLAN.md (legacy)
+  const planFiles = findFiles(fullDir, /PLAN.*\.md$/i);
+
+  const plans = [];
+  const waves = {};
+
+  for (const file of planFiles) {
+    const content = fs.readFileSync(path.join(fullDir, file), 'utf8');
+    const fm = parseYamlFrontmatter(content);
+
+    const plan = {
+      file,
+      plan_id: fm.plan || file.replace(/^PLAN-?/i, '').replace(/-PLAN/i, '').replace(/\.md$/i, ''),
+      wave: parseInt(fm.wave, 10) || 1,
+      type: fm.type || 'unknown',
+      autonomous: fm.autonomous !== false,
+      depends_on: fm.depends_on || [],
+      gap_closure: fm.gap_closure || false,
+      has_summary: fs.existsSync(path.join(fullDir, `SUMMARY-${fm.plan || ''}.md`)),
+      must_haves_count: countMustHaves(fm.must_haves)
+    };
+
+    plans.push(plan);
+
+    const waveKey = `wave_${plan.wave}`;
+    if (!waves[waveKey]) waves[waveKey] = [];
+    waves[waveKey].push(plan.plan_id);
+  }
+
+  return {
+    phase: phaseDir.name,
+    total_plans: plans.length,
+    plans,
+    waves
+  };
+}
+
+/**
+ * Collect all must-haves from all PLAN.md files in a phase.
+ * Returns per-plan grouping + flat deduplicated list + total count.
+ *
+ * @param {string} phaseNum - Phase number
+ * @param {string} [planningDir] - Path to .planning directory
+ */
+function phaseMustHaves(phaseNum, planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const phasesDir = path.join(dir, 'phases');
+  if (!fs.existsSync(phasesDir)) {
+    return { error: 'No phases directory found' };
+  }
+
+  const entries = fs.readdirSync(phasesDir, { withFileTypes: true })
+    .filter(e => e.isDirectory());
+  const phaseDir = entries.find(e => e.name.startsWith(String(phaseNum).padStart(2, '0') + '-'));
+  if (!phaseDir) {
+    return { error: `No phase directory found matching phase ${phaseNum}` };
+  }
+
+  const fullDir = path.join(phasesDir, phaseDir.name);
+  const planFiles = findFiles(fullDir, /PLAN.*\.md$/i);
+
+  const perPlan = {};
+  const allTruths = new Set();
+  const allArtifacts = new Set();
+  const allKeyLinks = new Set();
+
+  for (const file of planFiles) {
+    const content = fs.readFileSync(path.join(fullDir, file), 'utf8');
+    const fm = parseYamlFrontmatter(content);
+    const planId = fm.plan || file.replace(/^PLAN-?/i, '').replace(/-PLAN/i, '').replace(/\.md$/i, '');
+    const mh = fm.must_haves || { truths: [], artifacts: [], key_links: [] };
+
+    perPlan[planId] = mh;
+    (mh.truths || []).forEach(t => allTruths.add(t));
+    (mh.artifacts || []).forEach(a => allArtifacts.add(a));
+    (mh.key_links || []).forEach(k => allKeyLinks.add(k));
+  }
+
+  const all = {
+    truths: [...allTruths],
+    artifacts: [...allArtifacts],
+    key_links: [...allKeyLinks]
+  };
+
+  return {
+    phase: phaseDir.name,
+    plans: perPlan,
+    all,
+    total: all.truths.length + all.artifacts.length + all.key_links.length
+  };
+}
+
+/**
+ * Comprehensive single-phase status combining roadmap, filesystem, and plan data.
+ *
+ * @param {string} phaseNum - Phase number
+ * @param {string} [planningDir] - Path to .planning directory
+ */
+function phaseInfo(phaseNum, planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const { parseRoadmapMd } = require('./roadmap.cjs');
+  const phasesDir = path.join(dir, 'phases');
+  if (!fs.existsSync(phasesDir)) {
+    return { error: 'No phases directory found' };
+  }
+
+  const entries = fs.readdirSync(phasesDir, { withFileTypes: true })
+    .filter(e => e.isDirectory());
+  const phaseDir = entries.find(e => e.name.startsWith(String(phaseNum).padStart(2, '0') + '-'));
+  if (!phaseDir) {
+    return { error: `No phase directory found matching phase ${phaseNum}` };
+  }
+
+  const fullDir = path.join(phasesDir, phaseDir.name);
+
+  // Get roadmap info
+  let roadmapInfo = null;
+  const roadmapPath = path.join(dir, 'ROADMAP.md');
+  if (fs.existsSync(roadmapPath)) {
+    const roadmapContent = fs.readFileSync(roadmapPath, 'utf8');
+    const roadmap = parseRoadmapMd(roadmapContent);
+    roadmapInfo = roadmap.phases.find(p => p.number === String(phaseNum).padStart(2, '0')) || null;
+  }
+
+  // Get plan index
+  const plans = phasePlanIndex(phaseNum, dir);
+
+  // Check for verification
+  const verificationPath = path.join(fullDir, 'VERIFICATION.md');
+  let verification = null;
+  if (fs.existsSync(verificationPath)) {
+    const vContent = fs.readFileSync(verificationPath, 'utf8');
+    verification = parseYamlFrontmatter(vContent);
+  }
+
+  // Check summaries
+  const summaryFiles = findFiles(fullDir, /^SUMMARY-.*\.md$/);
+  const summaries = summaryFiles.map(f => {
+    const content = fs.readFileSync(path.join(fullDir, f), 'utf8');
+    const fm = parseYamlFrontmatter(content);
+    return { file: f, plan: fm.plan || f.replace(/^SUMMARY-|\.md$/g, ''), status: fm.status || 'unknown' };
+  });
+
+  // Determine filesystem status
+  const planCount = plans.total_plans || 0;
+  const completedCount = summaries.filter(s => s.status === 'complete').length;
+  const hasVerification = fs.existsSync(verificationPath);
+  const fsStatus = determinePhaseStatus(planCount, completedCount, summaryFiles.length, hasVerification, fullDir);
+
+  return {
+    phase: phaseDir.name,
+    name: roadmapInfo ? roadmapInfo.name : phaseDir.name.replace(/^\d+-/, ''),
+    goal: roadmapInfo ? roadmapInfo.goal : null,
+    roadmap_status: roadmapInfo ? roadmapInfo.status : null,
+    filesystem_status: fsStatus,
+    plans: plans.plans || [],
+    plan_count: planCount,
+    summaries,
+    completed: completedCount,
+    verification,
+    has_context: fs.existsSync(path.join(fullDir, 'CONTEXT.md'))
+  };
+}
+
+/**
+ * Add a new phase directory (with renumbering and optional ROADMAP.md integration).
+ *
+ * @param {string} slug - Phase slug
+ * @param {string|null} afterPhase - Insert after this phase number
+ * @param {string} [planningDir] - Path to .planning directory
+ * @param {object} [options] - Optional settings: { goal, dependsOn }
+ */
+function phaseAdd(slug, afterPhase, planningDir, options) {
+  // Handle backward compat: if planningDir is an object, it's actually options
+  if (typeof planningDir === 'object' && planningDir !== null && !options) {
+    options = planningDir;
+    planningDir = undefined;
+  }
+  const opts = options || {};
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const phasesDir = path.join(dir, 'phases');
+  if (!fs.existsSync(phasesDir)) {
+    fs.mkdirSync(phasesDir, { recursive: true });
+  }
+
+  // Determine next phase number
+  const existing = fs.readdirSync(phasesDir)
+    .filter(d => /^\d+-/.test(d))
+    .map(d => parseInt(d.split('-')[0], 10))
+    .sort((a, b) => a - b);
+
+  let newNum;
+  if (afterPhase) {
+    const after = parseInt(afterPhase, 10);
+    // Find the next number after the specified phase
+    const higher = existing.filter(n => n > after);
+    if (higher.length > 0) {
+      // Need to renumber: insert between after and next
+      newNum = after + 1;
+      // Renumber all phases >= newNum
+      for (const dirName of fs.readdirSync(phasesDir).sort().reverse()) {
+        const num = parseInt(dirName.split('-')[0], 10);
+        if (num >= newNum) {
+          const newName = dirName.replace(/^\d+/, String(num + 1).padStart(2, '0'));
+          fs.renameSync(path.join(phasesDir, dirName), path.join(phasesDir, newName));
+        }
+      }
+    } else {
+      newNum = after + 1;
+    }
+  } else {
+    newNum = existing.length > 0 ? Math.max(...existing) + 1 : 1;
+  }
+
+  const dirName = `${String(newNum).padStart(2, '0')}-${slug}`;
+  const fullPath = path.join(phasesDir, dirName);
+  fs.mkdirSync(fullPath, { recursive: true });
+
+  // ROADMAP.md integration
+  let roadmapUpdated = false;
+  const roadmapPath = path.join(dir, 'ROADMAP.md');
+  if (fs.existsSync(roadmapPath)) {
+    const phaseName = slug.replace(/-/g, ' ').replace(/\b\w/g, c => c.toUpperCase());
+    const depNum = opts.dependsOn ? parseInt(opts.dependsOn, 10) : null;
+    const result = roadmapAppendPhase(dir, newNum, phaseName, opts.goal || null, depNum);
+    roadmapUpdated = result.success !== false;
+  }
+
+  return {
+    phase: newNum,
+    slug,
+    directory: dirName,
+    path: fullPath,
+    renumbered: afterPhase ? true : false,
+    goal: opts.goal || null,
+    depends_on: opts.dependsOn || null,
+    roadmap_updated: roadmapUpdated
+  };
+}
+
+/**
+ * Remove a phase directory (with renumbering, ROADMAP.md cleanup, STATE.md adjustment).
+ * Refuses to remove current or completed phases.
+ *
+ * @param {string} phaseNum - Phase number to remove
+ * @param {string} [planningDir] - Path to .planning directory
+ */
+function phaseRemove(phaseNum, planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const phasesDir = path.join(dir, 'phases');
+  const num = parseInt(phaseNum, 10);
+  const padded = String(num).padStart(2, '0');
+  const dirs = fs.readdirSync(phasesDir).filter(d => d.startsWith(padded + '-'));
+
+  if (dirs.length === 0) {
+    return { removed: false, error: `Phase ${phaseNum} not found` };
+  }
+
+  const dirName = dirs[0];
+  const fullPath = path.join(phasesDir, dirName);
+
+  // Safety check: refuse to remove current phase
+  const statePath = path.join(dir, 'STATE.md');
+  let currentPhase = null;
+  if (fs.existsSync(statePath)) {
+    const stateContent = fs.readFileSync(statePath, 'utf8');
+    const fm = parseYamlFrontmatter(stateContent);
+    currentPhase = fm.current_phase != null ? parseInt(fm.current_phase, 10) : null;
+    if (currentPhase === num) {
+      return { removed: false, error: `Cannot remove phase ${phaseNum}: it is the current active phase` };
+    }
+  }
+
+  // Safety check: refuse to remove completed phase (has passing VERIFICATION.md)
+  const verPath = path.join(fullPath, 'VERIFICATION.md');
+  if (fs.existsSync(verPath)) {
+    const verContent = fs.readFileSync(verPath, 'utf8');
+    const verFm = parseYamlFrontmatter(verContent);
+    if (verFm.result === 'passed') {
+      return { removed: false, error: `Cannot remove phase ${phaseNum}: it has passed verification` };
+    }
+  }
+
+  // Check if phase has artifacts (still allow removal if empty)
+  const contents = fs.readdirSync(fullPath);
+  if (contents.length > 0) {
+    return {
+      removed: false,
+      error: `Phase ${phaseNum} (${dirName}) has ${contents.length} files. Remove contents first or use --force.`,
+      files: contents
+    };
+  }
+
+  fs.rmdirSync(fullPath);
+
+  // Renumber subsequent phases on disk
+  const allDirs = fs.readdirSync(phasesDir)
+    .filter(d => /^\d+-/.test(d))
+    .sort();
+
+  for (const d of allDirs) {
+    const dNum = parseInt(d.split('-')[0], 10);
+    if (dNum > num) {
+      const newName = d.replace(/^\d+/, String(dNum - 1).padStart(2, '0'));
+      fs.renameSync(path.join(phasesDir, d), path.join(phasesDir, newName));
+    }
+  }
+
+  // ROADMAP.md integration
+  let roadmapUpdated = false;
+  const roadmapPath = path.join(dir, 'ROADMAP.md');
+  if (fs.existsSync(roadmapPath)) {
+    roadmapRemovePhase(dir, num);
+    roadmapRenumberPhases(dir, num + 1, -1);
+    roadmapUpdated = true;
+  }
+
+  // STATE.md adjustment: if current_phase > removed phase, decrement it
+  let stateUpdated = false;
+  if (currentPhase !== null && currentPhase > num && fs.existsSync(statePath)) {
+    const stateContent = fs.readFileSync(statePath, 'utf8');
+    const newContent = updateFrontmatterField(stateContent, 'current_phase', currentPhase - 1);
+    fs.writeFileSync(statePath, newContent, 'utf8');
+    stateUpdated = true;
+  }
+
+  return {
+    removed: true,
+    directory: dirName,
+    renumbered: true,
+    roadmap_updated: roadmapUpdated,
+    state_updated: stateUpdated
+  };
+}
+
+/**
+ * List all phase directories with status.
+ *
+ * @param {string} [planningDir] - Path to .planning directory
+ */
+function phaseList(planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const phasesDir = path.join(dir, 'phases');
+  if (!fs.existsSync(phasesDir)) {
+    return { phases: [] };
+  }
+
+  const phases = fs.readdirSync(phasesDir)
+    .filter(d => /^\d+-/.test(d))
+    .sort()
+    .map(d => {
+      const num = parseInt(d.split('-')[0], 10);
+      const slug = d.replace(/^\d+-/, '');
+      const fullPath = path.join(phasesDir, d);
+      const files = fs.readdirSync(fullPath);
+      const hasPlan = files.some(f => /^PLAN/i.test(f));
+      const hasSummary = files.some(f => /^SUMMARY/i.test(f));
+      const hasVerification = files.some(f => /^VERIFICATION/i.test(f));
+      return { num, slug, directory: d, files: files.length, hasPlan, hasSummary, hasVerification };
+    });
+
+  return { phases };
+}
+
+/**
+ * Extract frontmatter-only stats from all SUMMARY.md files across a milestone's phases.
+ * Never reads SUMMARY body content -- only YAML frontmatter.
+ *
+ * Strategy for finding phases:
+ *   1. Check milestone archive: .planning/milestones/v{version}/phases/
+ *   2. Fall back to active phases dir: .planning/phases/
+ *      matching phase numbers extracted from ROADMAP.md milestone section.
+ *
+ * @param {string} version - Milestone version string (e.g. "5.0", "6.0")
+ * @param {string} [planningDir] - Path to .planning directory
+ * @returns {object} Milestone stats with per-phase summaries and aggregated fields
+ */
+function milestoneStats(version, planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+
+  const phases = [];
+
+  // --- Strategy 1: Check milestone archive ---
+  const archivePhasesDir = path.join(dir, 'milestones', `v${version}`, 'phases');
+  if (fs.existsSync(archivePhasesDir)) {
+    const phaseDirs = fs.readdirSync(archivePhasesDir, { withFileTypes: true })
+      .filter(e => e.isDirectory() && /^\d+-/.test(e.name))
+      .sort((a, b) => a.name.localeCompare(b.name));
+
+    for (const phaseEntry of phaseDirs) {
+      const phaseData = _collectPhaseStats(path.join(archivePhasesDir, phaseEntry.name), phaseEntry.name);
+      if (phaseData) phases.push(phaseData);
+    }
+  } else {
+    // --- Strategy 2: Parse ROADMAP.md to find phase numbers for this milestone ---
+    const roadmapPath = path.join(dir, 'ROADMAP.md');
+    const phaseNums = _extractMilestonePhaseNums(roadmapPath, version);
+    const phasesDir = path.join(dir, 'phases');
+
+    if (fs.existsSync(phasesDir) && phaseNums.length > 0) {
+      const allDirs = fs.readdirSync(phasesDir, { withFileTypes: true })
+        .filter(e => e.isDirectory() && /^\d+-/.test(e.name))
+        .sort((a, b) => a.name.localeCompare(b.name));
+
+      for (const phaseEntry of allDirs) {
+        const num = parseInt(phaseEntry.name.split('-')[0], 10);
+        if (phaseNums.includes(num)) {
+          const phaseData = _collectPhaseStats(path.join(phasesDir, phaseEntry.name), phaseEntry.name);
+          if (phaseData) phases.push(phaseData);
+        }
+      }
+    }
+  }
+
+  // --- Aggregate across all phases ---
+  const providesSet = new Set();
+  const keyFilesSet = new Set();
+  const patternsSet = new Set();
+  const allKeyDecisions = [];
+  const allDeferred = [];
+  const totalMetrics = { tasks_completed: 0, commits: 0, files_changed: 0 };
+
+  for (const phase of phases) {
+    for (const summary of phase.summaries) {
+      (summary.provides || []).forEach(v => providesSet.add(v));
+      (summary.key_files || []).forEach(v => keyFilesSet.add(v));
+      (summary.patterns || []).forEach(v => patternsSet.add(v));
+      (summary.key_decisions || []).forEach(v => allKeyDecisions.push(v));
+      (summary.deferred || []).forEach(v => allDeferred.push(v));
+      const m = summary.metrics || {};
+      totalMetrics.tasks_completed += parseInt(m.tasks_completed, 10) || 0;
+      totalMetrics.commits += parseInt(m.commits, 10) || 0;
+      totalMetrics.files_changed += parseInt(m.files_changed, 10) || 0;
+    }
+  }
+
+  return {
+    version,
+    phase_count: phases.length,
+    phases,
+    aggregated: {
+      all_provides: [...providesSet],
+      all_key_files: [...keyFilesSet],
+      all_key_decisions: allKeyDecisions,
+      all_patterns: [...patternsSet],
+      all_deferred: allDeferred,
+      total_metrics: totalMetrics
+    }
+  };
+}
+
+/**
+ * Collect frontmatter-only stats from all SUMMARY*.md files in a single phase directory.
+ *
+ * @param {string} fullDir - Full path to phase directory
+ * @param {string} dirName - Directory name (e.g. "46-agent-contracts")
+ * @returns {object}
+ */
+function _collectPhaseStats(fullDir, dirName) {
+  const numStr = dirName.split('-')[0];
+  const name = dirName.replace(/^\d+-/, '');
+
+  const summaryFiles = findFiles(fullDir, /^SUMMARY.*\.md$/i);
+  const summaries = [];
+
+  for (const file of summaryFiles) {
+    const filePath = path.join(fullDir, file);
+    const content = fs.readFileSync(filePath, 'utf8');
+
+    // Extract ONLY the YAML frontmatter -- never read body content
+    const fm = parseYamlFrontmatter(content);
+
+    // Collect only the documented frontmatter fields
+    const entry = {};
+    const fields = ['phase', 'plan', 'status', 'provides', 'requires', 'key_files',
+      'key_decisions', 'patterns', 'metrics', 'deferred', 'tags'];
+    for (const field of fields) {
+      if (fm[field] !== undefined) {
+        entry[field] = fm[field];
+      }
+    }
+    summaries.push(entry);
+  }
+
+  return {
+    number: numStr,
+    name,
+    summaries
+  };
+}
+
+/**
+ * Parse ROADMAP.md to find phase numbers belonging to a milestone version.
+ * Scans for milestone section headers containing the version string, then
+ * collects phase numbers from "### Phase N:" headings or "Phases N-M" text.
+ *
+ * @param {string} roadmapPath - Path to ROADMAP.md
+ * @param {string} version - Version string (e.g. "5.0")
+ * @returns {number[]} Array of phase numbers
+ */
+function _extractMilestonePhaseNums(roadmapPath, version) {
+  if (!fs.existsSync(roadmapPath)) return [];
+
+  const content = fs.readFileSync(roadmapPath, 'utf8');
+  const lines = content.split(/\r?\n/);
+
+  const phaseNums = [];
+  let inMilestoneSection = false;
+
+  for (let i = 0; i < lines.length; i++) {
+    const line = lines[i];
+
+    // Detect milestone section header (## Milestone: ... (vX.Y) or containing version)
+    if (/^##\s+Milestone:/i.test(line)) {
+      inMilestoneSection = line.includes(`v${version}`) || line.includes(`(${version})`);
+      continue;
+    }
+
+    // If we hit a new ## section (not ###), exit the milestone section
+    if (/^##\s+[^#]/.test(line)) {
+      if (inMilestoneSection) break;
+      continue;
+    }
+
+    if (!inMilestoneSection) continue;
+
+    // Extract phase numbers from "### Phase N:" headings
+    const phaseHeading = line.match(/^###\s+Phase\s+(\d+)/i);
+    if (phaseHeading) {
+      phaseNums.push(parseInt(phaseHeading[1], 10));
+      continue;
+    }
+
+    // Extract from "Phases N-M" or "Phase N" text
+    const phaseRange = line.match(/Phases?\s+(\d+)(?:-(\d+))?/gi);
+    if (phaseRange) {
+      for (const match of phaseRange) {
+        const rangeMatch = match.match(/(\d+)(?:-(\d+))?/);
+        if (rangeMatch) {
+          const start = parseInt(rangeMatch[1], 10);
+          const end = rangeMatch[2] ? parseInt(rangeMatch[2], 10) : start;
+          for (let n = start; n <= end; n++) {
+            if (!phaseNums.includes(n)) phaseNums.push(n);
+          }
+        }
+      }
+    }
+
+    // Row entries in phase overview tables: | 51 | CLI Foundation | ...
+    const tableRow = line.match(/^\|\s*(\d+)\s*\|/);
+    if (tableRow) {
+      const n = parseInt(tableRow[1], 10);
+      if (!phaseNums.includes(n)) phaseNums.push(n);
+    }
+  }
+
+  return phaseNums;
+}
+
+/**
+ * Mark a phase as complete: update ROADMAP.md progress table and STATE.md.
+ *
+ * Atomically updates ROADMAP.md (status -> Complete, date appended, checklist checked)
+ * and STATE.md (advance to next phase, reset plans_complete, set status).
+ *
+ * @param {string} phaseNum - Phase number to complete (string)
+ * @param {string} [planningDir] - Path to .planning directory
+ * @returns {object} Result with success, completed_phase, next_phase, etc.
+ */
+function phaseComplete(phaseNum, planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const statePath = path.join(dir, 'STATE.md');
+  const roadmapPath = path.join(dir, 'ROADMAP.md');
+
+  if (!fs.existsSync(statePath)) {
+    return { success: false, error: 'STATE.md not found' };
+  }
+  if (!fs.existsSync(roadmapPath)) {
+    return { success: false, error: 'ROADMAP.md not found' };
+  }
+
+  const num = parseInt(phaseNum, 10);
+  const today = new Date().toISOString().slice(0, 10);
+
+  // --- Parse ROADMAP.md progress table to find all phases and the target row ---
+  const roadmapContent = fs.readFileSync(roadmapPath, 'utf8');
+  const lines = roadmapContent.split(/\r?\n/);
+
+  // Find all phase entries in progress table rows
+  const phaseEntries = [];
+  let targetRowIdx = -1;
+
+  for (let i = 0; i < lines.length; i++) {
+    const match = lines[i].match(/^\|\s*(\d+)\.\s+(.+?)\s*\|/);
+    if (match) {
+      const entryNum = parseInt(match[1], 10);
+      const entryName = match[2].trim();
+      phaseEntries.push({ num: entryNum, name: entryName, lineIdx: i });
+      if (entryNum === num) {
+        targetRowIdx = i;
+      }
+    }
+  }
+
+  if (targetRowIdx === -1) {
+    return { success: false, error: `Phase ${phaseNum} not found in ROADMAP.md progress table` };
+  }
+
+  // --- Update ROADMAP.md atomically ---
+  const roadmapResult = lockedFileUpdate(roadmapPath, (content) => {
+    let updated = content;
+    const contentLines = updated.split(/\r?\n/);
+    const lineEnding = content.includes('\r\n') ? '\r\n' : '\n';
+
+    // Update the progress table row: replace status column with Complete and add date
+    const row = contentLines[targetRowIdx];
+    const cols = row.split('|').map(c => c.trim());
+    // cols: ['', 'N. Name', 'X/Y', 'Status', '' (trailing)]
+    // Find the status column (usually index 3)
+    if (cols.length >= 4) {
+      cols[3] = ` Complete`;
+      // Add date
+      if (cols.length === 5) {
+        cols.splice(4, 0, ` ${today} `);
+      } else if (cols.length > 5) {
+        cols[4] = ` ${today} `;
+      }
+      contentLines[targetRowIdx] = cols.join('|');
+    }
+
+    // Update phase checklist if present: - [ ] Phase N: -> - [x] Phase N:
+    const checklistPattern = new RegExp(`^(\\s*- \\[)( )(\\] Phase ${num}[:\\s])`, 'i');
+    for (let i = 0; i < contentLines.length; i++) {
+      if (checklistPattern.test(contentLines[i])) {
+        contentLines[i] = contentLines[i].replace(checklistPattern, '$1x$3');
+      }
+    }
+
+    return contentLines.join(lineEnding);
+  });
+
+  if (!roadmapResult.success) {
+    return { success: false, error: `Failed to update ROADMAP.md: ${roadmapResult.error}` };
+  }
+
+  // --- Determine next phase ---
+  const sortedEntries = phaseEntries.sort((a, b) => a.num - b.num);
+  const currentIdx = sortedEntries.findIndex(e => e.num === num);
+  const nextEntry = currentIdx !== -1 && currentIdx < sortedEntries.length - 1
+    ? sortedEntries[currentIdx + 1]
+    : null;
+
+  const nextPhaseNum = nextEntry ? String(nextEntry.num) : null;
+  // Derive slug from name: lowercase, replace spaces with hyphens
+  const nextSlug = nextEntry
+    ? nextEntry.name.toLowerCase().replace(/\s+/g, '-').replace(/[^a-z0-9-]/g, '')
+    : null;
+
+  // --- Update STATE.md (compound update via statePatch for atomicity) ---
+  if (nextEntry) {
+    statePatch(JSON.stringify({
+      current_phase: nextPhaseNum,
+      plans_complete: '0',
+      status: 'planned',
+      phase_slug: nextSlug
+    }), dir);
+  } else {
+    // Final phase in milestone
+    statePatch(JSON.stringify({ status: 'verified' }), dir);
+
+    // Update PROJECT.md milestone status if it exists
+    _updateProjectMilestoneStatus(dir, num);
+  }
+
+  // Recalculate progress
+  stateUpdateProgress(dir);
+
+  // --- Write .phase-manifest.json aggregating all plan commits ---
+  let manifestWritten = false;
+  try {
+    const phasesDir = path.join(dir, 'phases');
+    const padded = String(num).padStart(2, '0');
+    const phaseDirEntry = fs.readdirSync(phasesDir).find(d => d.startsWith(padded + '-'));
+    if (phaseDirEntry) {
+      const fullPhaseDir = path.join(phasesDir, phaseDirEntry);
+      const manifest = _buildPhaseManifest(num, fullPhaseDir);
+      const manifestPath = path.join(fullPhaseDir, '.phase-manifest.json');
+      fs.writeFileSync(manifestPath, JSON.stringify(manifest, null, 2), 'utf8');
+      manifestWritten = true;
+    }
+  } catch (_e) {
+    // Non-fatal: manifest is advisory for undo operations
+  }
+
+  return {
+    success: true,
+    completed_phase: num,
+    next_phase: nextPhaseNum ? parseInt(nextPhaseNum, 10) : null,
+    next_slug: nextSlug,
+    roadmap_updated: true,
+    state_updated: true,
+    final_phase: nextPhaseNum === null,
+    manifest_written: manifestWritten
+  };
+}
+
+/**
+ * Update PROJECT.md milestone status when the final phase completes.
+ * Non-fatal — if PROJECT.md doesn't exist or update fails, we skip silently.
+ *
+ * @param {string} planningDir - Path to .planning directory
+ * @param {number} finalPhaseNum - The phase number that just completed
+ */
+function _updateProjectMilestoneStatus(planningDir, finalPhaseNum) {
+  try {
+    const projectPath = path.join(planningDir, 'PROJECT.md');
+    if (!fs.existsSync(projectPath)) return;
+
+    const today = new Date().toISOString().slice(0, 10);
+
+    lockedFileUpdate(projectPath, (content) => {
+      let updated = content;
+
+      // Update frontmatter milestone_status if present
+      updated = updated.replace(
+        /^(milestone_status:\s*)"[^"]*"/m,
+        `$1"complete"`
+      );
+
+      // Update "In progress" to "Complete" in body text
+      updated = updated.replace(
+        /\*\*Status:\*\*\s*In progress/i,
+        `**Status:** Complete (${today})`
+      );
+
+      // Update "(none yet)" completed milestones marker
+      updated = updated.replace(
+        /\(none yet\)/,
+        `v1.0 completed ${today} (phases 1-${finalPhaseNum})`
+      );
+
+      return updated;
+    });
+  } catch (_e) {
+    // Non-fatal: PROJECT.md update is advisory
+  }
+}
+
+/**
+ * Build a phase manifest by collecting commit hashes from all plan SUMMARY.md files.
+ *
+ * @param {number} phaseNum - Phase number
+ * @param {string} phaseDir - Full path to the phase directory
+ * @returns {object} Phase manifest
+ */
+function _buildPhaseManifest(phaseNum, phaseDir) {
+  const summaryFiles = findFiles(phaseDir, /^SUMMARY.*\.md$/i);
+  const commits = [];
+
+  for (const file of summaryFiles) {
+    const content = fs.readFileSync(path.join(phaseDir, file), 'utf8');
+    const fm = parseYamlFrontmatter(content);
+    const planId = fm.plan || file.replace(/^SUMMARY-?/i, '').replace(/\.md$/i, '');
+
+    // Extract commits from frontmatter metrics or commits field
+    if (fm.commits && Array.isArray(fm.commits)) {
+      for (const c of fm.commits) {
+        commits.push({
+          hash: c.hash || c.sha || c,
+          message: c.message || '',
+          plan: planId,
+          task: c.task || null
+        });
+      }
+    }
+
+    // Also try to parse "Task Commits" section from body
+    const taskCommitRegex = /\|\s*(\d+)\s*\|[^|]*\|\s*([0-9a-f]{7,})\s*\|/gi;
+    let match;
+    while ((match = taskCommitRegex.exec(content)) !== null) {
+      const hash = match[2];
+      // Avoid duplicates
+      if (!commits.some(c => c.hash === hash)) {
+        commits.push({
+          hash,
+          message: '',
+          plan: planId,
+          task: parseInt(match[1], 10)
+        });
+      }
+    }
+  }
+
+  return {
+    phase: String(phaseNum).padStart(2, '0'),
+    completed: new Date().toISOString(),
+    commits,
+    first_commit: commits.length > 0 ? commits[0].hash : null,
+    last_commit: commits.length > 0 ? commits[commits.length - 1].hash : null
+  };
+}
+
+/**
+ * Get all commits associated with a phase by scanning SUMMARY.md files.
+ *
+ * @param {string} phaseNum - Phase number
+ * @param {string} [planningDir] - Path to .planning directory
+ * @returns {object} { commits: Array, first_commit, last_commit }
+ */
+function phaseCommitsFor(phaseNum, planningDir) {
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const phasesDir = path.join(dir, 'phases');
+  const padded = String(phaseNum).padStart(2, '0');
+
+  let phaseDir = null;
+  try {
+    const entries = fs.readdirSync(phasesDir);
+    const match = entries.find(d => d.startsWith(padded + '-'));
+    if (match) phaseDir = path.join(phasesDir, match);
+  } catch (_e) { /* ignore */ }
+
+  if (!phaseDir) {
+    return { error: `Phase ${phaseNum} directory not found`, commits: [] };
+  }
+
+  const manifest = _buildPhaseManifest(parseInt(phaseNum, 10), phaseDir);
+  return {
+    commits: manifest.commits,
+    first_commit: manifest.first_commit,
+    last_commit: manifest.last_commit,
+    phase: padded
+  };
+}
+
+/**
+ * Get the first and last commit hashes for a phase.
+ *
+ * @param {string} phaseNum - Phase number
+ * @param {string} [planningDir] - Path to .planning directory
+ * @returns {object} { first_commit, last_commit }
+ */
+function phaseFirstLastCommit(phaseNum, planningDir) {
+  const result = phaseCommitsFor(phaseNum, planningDir);
+  return {
+    first_commit: result.first_commit || null,
+    last_commit: result.last_commit || null,
+    commit_count: result.commits ? result.commits.length : 0
+  };
+}
+
+/**
+ * Insert a new phase at a specific position, renumbering all subsequent phases
+ * on disk, in ROADMAP.md, and in STATE.md.
+ *
+ * @param {number} position - Position to insert at (1-based)
+ * @param {string} slug - Phase slug
+ * @param {string} [planningDir] - Path to .planning directory
+ * @param {object} [options] - Optional: { goal, dependsOn }
+ * @returns {object} Result with phase, slug, directory, renumbered_count, etc.
+ */
+function phaseInsert(position, slug, planningDir, options) {
+  // Handle backward compat: if planningDir is an object, it's actually options
+  if (typeof planningDir === 'object' && planningDir !== null && !options) {
+    options = planningDir;
+    planningDir = undefined;
+  }
+  const opts = options || {};
+  const dir = planningDir || path.join(process.env.PBR_PROJECT_ROOT || process.cwd(), '.planning');
+  const phasesDir = path.join(dir, 'phases');
+
+  if (!Number.isInteger(position) || position < 1) {
+    return { error: 'Position must be a positive integer' };
+  }
+
+  if (!fs.existsSync(phasesDir)) {
+    fs.mkdirSync(phasesDir, { recursive: true });
+  }
+
+  // Get existing phase dirs sorted by number
+  const existingDirs = fs.readdirSync(phasesDir)
+    .filter(d => /^\d+-/.test(d))
+    .sort();
+
+  // Renumber dirs with number >= position (iterate in REVERSE to avoid collisions)
+  let renumberedCount = 0;
+  const dirsToRename = existingDirs
+    .filter(d => parseInt(d.split('-')[0], 10) >= position)
+    .sort()
+    .reverse();
+
+  for (const d of dirsToRename) {
+    const num = parseInt(d.split('-')[0], 10);
+    const newName = d.replace(/^\d+/, String(num + 1).padStart(2, '0'));
+    fs.renameSync(path.join(phasesDir, d), path.join(phasesDir, newName));
+    renumberedCount++;
+  }
+
+  // Create the new phase directory
+  const dirName = String(position).padStart(2, '0') + '-' + slug;
+  const fullPath = path.join(phasesDir, dirName);
+  fs.mkdirSync(fullPath, { recursive: true });
+
+  // ROADMAP.md integration
+  let roadmapUpdated = false;
+  const roadmapPath = path.join(dir, 'ROADMAP.md');
+  if (fs.existsSync(roadmapPath)) {
+    const { roadmapInsertPhase } = require('./roadmap.cjs');
+    // First renumber existing phases in ROADMAP.md
+    roadmapRenumberPhases(dir, position, +1);
+    // Then insert the new phase at the right position
+    const phaseName = slug.replace(/-/g, ' ').replace(/\b\w/g, c => c.toUpperCase());
+    const depNum = opts.dependsOn ? parseInt(opts.dependsOn, 10) : null;
+    roadmapInsertPhase(dir, position, phaseName, opts.goal || null, depNum);
+    roadmapUpdated = true;
+  }
+
+  // STATE.md adjustment: if current_phase >= position, increment it
+  let stateUpdated = false;
+  const statePath = path.join(dir, 'STATE.md');
+  if (fs.existsSync(statePath)) {
+    const stateContent = fs.readFileSync(statePath, 'utf8');
+    const fm = parseYamlFrontmatter(stateContent);
+    const currentPhase = fm.current_phase != null ? parseInt(fm.current_phase, 10) : null;
+    if (currentPhase !== null && currentPhase >= position) {
+      const newContent = updateFrontmatterField(stateContent, 'current_phase', currentPhase + 1);
+      fs.writeFileSync(statePath, newContent, 'utf8');
+      stateUpdated = true;
+    }
+  }
+
+  return {
+    phase: position,
+    slug,
+    directory: dirName,
+    path: fullPath,
+    renumbered_count: renumberedCount,
+    roadmap_updated: roadmapUpdated,
+    state_updated: stateUpdated
+  };
+}
+
+module.exports = {
+  frontmatter,
+  phasePlanIndex,
+  phaseMustHaves,
+  phaseInfo,
+  phaseAdd,
+  phaseRemove,
+  phaseList,
+  milestoneStats,
+  phaseComplete,
+  phaseInsert,
+  phaseCommitsFor,
+  phaseFirstLastCommit
+};