@rubix0270/arboris 1.0.0

package/prisma/skills/continuous-learning/SKILL.md

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+---
+name: continuous-learning
+description: "[DEPRECATED - use continuous-learning-v2] Legacy v1 stop-hook skill extractor. v2 is a strict superset with instinct-based, project-scoped, hook-reliable learning. Do not invoke v1; route continuous learning, session learning, and pattern extraction requests to continuous-learning-v2."
+metadata:
+  origin: ECC
+---
+
+# Continuous Learning Skill - DEPRECATED
+
+> **DEPRECATED 2026-04-28.** Use `continuous-learning-v2` instead. v2 is a strict superset: stop-hook observation becomes PreToolUse/PostToolUse observation, full skills become atomic instincts with confidence scoring, and global-only storage becomes project-scoped plus global promotion.
+>
+> This file is kept for archival reference and backward compatibility with existing installs.
+
+---
+
+## Original v1 Documentation (archival)
+
+Automatically evaluates Claude Code sessions on end to extract reusable patterns that can be saved as learned skills.
+
+## When to Activate
+
+- Setting up automatic pattern extraction from Claude Code sessions
+- Configuring the Stop hook for session evaluation
+- Reviewing or curating learned skills in `~/.claude/skills/learned/`
+- Adjusting extraction thresholds or pattern categories
+- Comparing v1 (this) vs v2 (instinct-based) approaches
+
+## Status
+
+This v1 skill is still supported, but `continuous-learning-v2` is the preferred path for new installs. Keep v1 when you explicitly want the simpler Stop-hook extraction flow or need compatibility with older learned-skill workflows.
+
+## How It Works
+
+This skill runs as a **Stop hook** at the end of each session:
+
+1. **Session Evaluation**: Checks if session has enough messages (default: 10+)
+2. **Pattern Detection**: Identifies extractable patterns from the session
+3. **Skill Extraction**: Saves useful patterns to `~/.claude/skills/learned/`
+
+## Configuration
+
+Edit `config.json` to customize:
+
+```json
+{
+  "min_session_length": 10,
+  "extraction_threshold": "medium",
+  "auto_approve": false,
+  "learned_skills_path": "~/.claude/skills/learned/",
+  "patterns_to_detect": [
+    "error_resolution",
+    "user_corrections",
+    "workarounds",
+    "debugging_techniques",
+    "project_specific"
+  ],
+  "ignore_patterns": [
+    "simple_typos",
+    "one_time_fixes",
+    "external_api_issues"
+  ]
+}
+```
+
+## Pattern Types
+
+| Pattern | Description |
+|---------|-------------|
+| `error_resolution` | How specific errors were resolved |
+| `user_corrections` | Patterns from user corrections |
+| `workarounds` | Solutions to framework/library quirks |
+| `debugging_techniques` | Effective debugging approaches |
+| `project_specific` | Project-specific conventions |
+
+## Hook Setup
+
+Add to your `~/.claude/settings.json`:
+
+```json
+{
+  "hooks": {
+    "Stop": [{
+      "matcher": "*",
+      "hooks": [{
+        "type": "command",
+        "command": "~/.claude/skills/continuous-learning/evaluate-session.sh"
+      }]
+    }]
+  }
+}
+```
+
+## Why Stop Hook?
+
+- **Lightweight**: Runs once at session end
+- **Non-blocking**: Doesn't add latency to every message
+- **Complete context**: Has access to full session transcript
+
+## Related
+
+- [The Longform Guide](https://x.com/affaanmustafa/status/2014040193557471352) - Section on continuous learning
+- `/learn` command - Manual pattern extraction mid-session
+
+---
+
+## Comparison Notes (Research: Jan 2025)
+
+### vs Homunculus
+
+Homunculus v2 takes a more sophisticated approach:
+
+| Feature | Our Approach | Homunculus v2 |
+|---------|--------------|---------------|
+| Observation | Stop hook (end of session) | PreToolUse/PostToolUse hooks (100% reliable) |
+| Analysis | Main context | Background agent (Haiku) |
+| Granularity | Full skills | Atomic "instincts" |
+| Confidence | None | 0.3-0.9 weighted |
+| Evolution | Direct to skill | Instincts → cluster → skill/command/agent |
+| Sharing | None | Export/import instincts |
+
+**Key insight from homunculus:**
+> "v1 relied on skills to observe. Skills are probabilistic—they fire ~50-80% of the time. v2 uses hooks for observation (100% reliable) and instincts as the atomic unit of learned behavior."
+
+### Potential v2 Enhancements
+
+1. **Instinct-based learning** - Smaller, atomic behaviors with confidence scoring
+2. **Background observer** - Haiku agent analyzing in parallel
+3. **Confidence decay** - Instincts lose confidence if contradicted
+4. **Domain tagging** - code-style, testing, git, debugging, etc.
+5. **Evolution path** - Cluster related instincts into skills/commands
+
+See: `docs/continuous-learning-v2-spec.md` for full spec.

package/prisma/skills/continuous-learning/config.json

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+{
+  "min_session_length": 10,
+  "extraction_threshold": "medium",
+  "auto_approve": false,
+  "learned_skills_path": "~/.claude/skills/learned/",
+  "patterns_to_detect": [
+    "error_resolution",
+    "user_corrections",
+    "workarounds",
+    "debugging_techniques",
+    "project_specific"
+  ],
+  "ignore_patterns": [
+    "simple_typos",
+    "one_time_fixes",
+    "external_api_issues"
+  ]
+}

package/prisma/skills/continuous-learning/evaluate-session.sh

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+#!/bin/bash
+# Continuous Learning - Session Evaluator
+# Runs on Stop hook to extract reusable patterns from Claude Code sessions
+#
+# Why Stop hook instead of UserPromptSubmit:
+# - Stop runs once at session end (lightweight)
+# - UserPromptSubmit runs every message (heavy, adds latency)
+#
+# Hook config (in ~/.claude/settings.json):
+# {
+#   "hooks": {
+#     "Stop": [{
+#       "matcher": "*",
+#       "hooks": [{
+#         "type": "command",
+#         "command": "~/.claude/skills/continuous-learning/evaluate-session.sh"
+#       }]
+#     }]
+#   }
+# }
+#
+# Patterns to detect: error_resolution, debugging_techniques, workarounds, project_specific
+# Patterns to ignore: simple_typos, one_time_fixes, external_api_issues
+# Extracted skills saved to: ~/.claude/skills/learned/
+
+set -e
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+CONFIG_FILE="$SCRIPT_DIR/config.json"
+LEARNED_SKILLS_PATH="${HOME}/.claude/skills/learned"
+MIN_SESSION_LENGTH=10
+
+# Load config if exists
+if [ -f "$CONFIG_FILE" ]; then
+  if ! command -v jq &>/dev/null; then
+    echo "[ContinuousLearning] jq is required to parse config.json but not installed, using defaults" >&2
+  else
+    MIN_SESSION_LENGTH=$(jq -r '.min_session_length // 10' "$CONFIG_FILE")
+    LEARNED_SKILLS_PATH=$(jq -r '.learned_skills_path // "~/.claude/skills/learned/"' "$CONFIG_FILE" | sed "s|~|$HOME|")
+  fi
+fi
+
+# Ensure learned skills directory exists
+mkdir -p "$LEARNED_SKILLS_PATH"
+
+# Get transcript path from stdin JSON (Claude Code hook input)
+# Falls back to env var for backwards compatibility
+stdin_data=$(cat)
+transcript_path=$(echo "$stdin_data" | grep -o '"transcript_path":"[^"]*"' | head -1 | cut -d'"' -f4)
+if [ -z "$transcript_path" ]; then
+  transcript_path="${CLAUDE_TRANSCRIPT_PATH:-}"
+fi
+
+if [ -z "$transcript_path" ] || [ ! -f "$transcript_path" ]; then
+  exit 0
+fi
+
+# Count messages in session
+message_count=$(grep -c '"type":"user"' "$transcript_path" 2>/dev/null || echo "0")
+
+# Skip short sessions
+if [ "$message_count" -lt "$MIN_SESSION_LENGTH" ]; then
+  echo "[ContinuousLearning] Session too short ($message_count messages), skipping" >&2
+  exit 0
+fi
+
+# Signal to Claude that session should be evaluated for extractable patterns
+echo "[ContinuousLearning] Session has $message_count messages - evaluate for extractable patterns" >&2
+echo "[ContinuousLearning] Save learned skills to: $LEARNED_SKILLS_PATH" >&2

package/prisma/skills/continuous-learning-v2/SKILL.md

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+---
+name: continuous-learning-v2
+description: Instinct-based learning system that observes sessions via hooks, creates atomic instincts with confidence scoring, and evolves them into skills/commands/agents. v2.1 adds project-scoped instincts to prevent cross-project contamination.
+metadata:
+  origin: ECC
+version: 2.1.0
+---
+
+# Continuous Learning v2.1 - Instinct
+-Based Architecture
+
+An advanced learning system that turns your Claude Code sessions into reusable knowledge through atomic "instincts" - small learned behaviors with confidence scoring.
+
+**v2.1** adds **project-scoped instincts** — React patterns stay in your React project, Python conventions stay in your Python project, and universal patterns (like "always validate input") are shared globally.
+
+## When to Activate
+
+- Setting up automatic learning from Claude Code sessions
+- Configuring instinct-based behavior extraction via hooks
+- Tuning confidence thresholds for learned behaviors
+- Reviewing, exporting, or importing instinct libraries
+- Evolving instincts into full skills, commands, or agents
+- Managing project-scoped vs global instincts
+- Promoting instincts from project to global scope
+
+## What's New in v2.1
+
+| Feature | v2.0 | v2.1 |
+|---------|------|------|
+| Storage | Global (`~/.claude/homunculus/`) | Project-scoped (`${XDG_DATA_HOME:-~/.local/share}/ecc-homunculus/projects/<hash>/`) |
+| Scope | All instincts apply everywhere | Project-scoped + global |
+| Detection | None | git remote URL / repo path |
+| Promotion | N/A | Project → global when seen in 2+ projects |
+| Commands | 4 (status/evolve/export/import) | 6 (+promote/projects) |
+| Cross-project | Contamination risk | Isolated by default |
+
+## What's New in v2 (vs v1)
+
+| Feature | v1 | v2 |
+|---------|----|----|
+| Observation | Stop hook (session end) | PreToolUse/PostToolUse (100% reliable) |
+| Analysis | Main context | Background agent (Haiku) |
+| Granularity | Full skills | Atomic "instincts" |
+| Confidence | None | 0.3-0.9 weighted |
+| Evolution | Direct to skill | Instincts -> cluster -> skill/command/agent |
+| Sharing | None | Export/import instincts |
+
+## The Instinct Model
+
+An instinct is a small learned behavior:
+
+```yaml
+---
+id: prefer-functional-style
+trigger: "when writing new functions"
+confidence: 0.7
+domain: "code-style"
+source: "session-observation"
+scope: project
+project_id: "a1b2c3d4e5f6"
+project_name: "my-react-app"
+---
+
+# Prefer Functional Style
+
+## Action
+Use functional patterns over classes when appropriate.
+
+## Evidence
+- Observed 5 instances of functional pattern preference
+- User corrected class-based approach to functional on 2025-01-15
+```
+
+**Properties:**
+- **Atomic** -- one trigger, one action
+- **Confidence-weighted** -- 0.3 = tentative, 0.9 = near certain
+- **Domain-tagged** -- code-style, testing, git, debugging, workflow, etc.
+- **Evidence-backed** -- tracks what observations created it
+- **Scope-aware** -- `project` (default) or `global`
+
+## How It Works
+
+```
+Session Activity (in a git repo)
+      |
+      | Hooks capture prompts + tool use (100% reliable)
+      | + detect project context (git remote / repo path)
+      v
++---------------------------------------------+
+|  projects/<project-hash>/observations.jsonl  |
+|   (prompts, tool calls, outcomes, project)   |
++---------------------------------------------+
+      |
+      | Observer agent reads (background, Haiku)
+      v
++---------------------------------------------+
+|          PATTERN DETECTION                   |
+|   * User corrections -> instinct             |
+|   * Error resolutions -> instinct            |
+|   * Repeated workflows -> instinct           |
+|   * Scope decision: project or global?       |
++---------------------------------------------+
+      |
+      | Creates/updates
+      v
++---------------------------------------------+
+|  projects/<project-hash>/instincts/personal/ |
+|   * prefer-functional.yaml (0.7) [project]   |
+|   * use-react-hooks.yaml (0.9) [project]     |
++---------------------------------------------+
+|  instincts/personal/  (GLOBAL)               |
+|   * always-validate-input.yaml (0.85) [global]|
+|   * grep-before-edit.yaml (0.6) [global]     |
++---------------------------------------------+
+      |
+      | /evolve clusters + /promote
+      v
++---------------------------------------------+
+|  projects/<hash>/evolved/ (project-scoped)   |
+|  evolved/ (global)                           |
+|   * commands/new-feature.md                  |
+|   * skills/testing-workflow.md               |
+|   * agents/refactor-specialist.md            |
++---------------------------------------------+
+```
+
+## Project Detection
+
+The system automatically detects your current project:
+
+1. **`CLAUDE_PROJECT_DIR` env var** (highest priority)
+2. **`git remote get-url origin`** -- hashed to create a portable project ID (same repo on different machines gets the same ID)
+3. **`git rev-parse --show-toplevel`** -- fallback using repo path (machine-specific)
+4. **Global fallback** -- if no project is detected, instincts go to global scope
+
+Each project gets a 12-character hash ID (e.g., `a1b2c3d4e5f6`). A registry file at `${XDG_DATA_HOME:-~/.local/share}/ecc-homunculus/projects.json` maps IDs to human-readable names.
+
+### Data Directory
+
+Continuous-learning-v2 stores observer data outside `~/.claude` so Claude Code's sensitive-path guard does not block background instinct writes:
+
+1. `CLV2_HOMUNCULUS_DIR` when set to an absolute path
+2. `$XDG_DATA_HOME/ecc-homunculus`
+3. `$HOME/.local/share/ecc-homunculus`
+
+Existing users with data at `~/.claude/homunculus` can migrate once:
+
+```bash
+bash skills/continuous-learning-v2/scripts/migrate-homunculus.sh
+```
+
+## Quick Start
+
+### 1. Enable Observation Hooks
+
+**If installed as a plugin** (recommended):
+
+No extra `settings.json` hook block is required. Claude Code v2.1+ auto-loads the plugin `hooks/hooks.json`, and `observe.sh` is already registered there.
+
+If you previously copied `observe.sh` into `~/.claude/settings.json`, remove that duplicate `PreToolUse` / `PostToolUse` block. Duplicating the plugin hook causes double execution and `${CLAUDE_PLUGIN_ROOT}` resolution errors because that variable is only available inside plugin-managed `hooks/hooks.json` entries.
+
+**If installed manually** to `~/.claude/skills`, add this to your `~/.claude/settings.json`:
+
+```json
+{
+  "hooks": {
+    "PreToolUse": [{
+      "matcher": "*",
+      "hooks": [{
+        "type": "command",
+        "command": "~/.claude/skills/continuous-learning-v2/hooks/observe.sh"
+      }]
+    }],
+    "PostToolUse": [{
+      "matcher": "*",
+      "hooks": [{
+        "type": "command",
+        "command": "~/.claude/skills/continuous-learning-v2/hooks/observe.sh"
+      }]
+    }]
+  }
+}
+```
+
+### 2. Initialize Directory Structure
+
+The system creates directories automatically on first use, but you can also create them manually:
+
+```bash
+# Global directories
+mkdir -p "${XDG_DATA_HOME:-$HOME/.local/share}/ecc-homunculus"/{instincts/{personal,inherited},evolved/{agents,skills,commands},projects}
+
+# Project directories are auto-created when the hook first runs in a git repo
+```
+
+### 3. Use the Instinct Commands
+
+```bash
+/instinct-status     # Show learned instincts (project + global)
+/evolve              # Cluster related instincts into skills/commands
+/instinct-export     # Export instincts to file
+/instinct-import     # Import instincts from others
+/promote             # Promote project instincts to global scope
+/projects            # List all known projects and their instinct counts
+```
+
+## Commands
+
+| Command | Description |
+|---------|-------------|
+| `/instinct-status` | Show all instincts (project-scoped + global) with confidence |
+| `/evolve` | Cluster related instincts into skills/commands, suggest promotions |
+| `/instinct-export` | Export instincts (filterable by scope/domain) |
+| `/instinct-import <file>` | Import instincts with scope control |
+| `/promote [id]` | Promote project instincts to global scope |
+| `/projects` | List all known projects and their instinct counts |
+
+## Configuration
+
+Edit `config.json` to control the background observer:
+
+```json
+{
+  "version": "2.1",
+  "observer": {
+    "enabled": false,
+    "run_interval_minutes": 5,
+    "min_observations_to_analyze": 20
+  }
+}
+```
+
+| Key | Default | Description |
+|-----|---------|-------------|
+| `observer.enabled` | `false` | Enable the background observer agent |
+| `observer.run_interval_minutes` | `5` | How often the observer analyzes observations |
+| `observer.min_observations_to_analyze` | `20` | Minimum observations before analysis runs |
+
+Other behavior (observation capture, instinct thresholds, project scoping, promotion criteria) is configured via code defaults in `instinct-cli.py` and `observe.sh`.
+
+## File Structure
+
+```
+${XDG_DATA_HOME:-~/.local/share}/ecc-homunculus/
++-- identity.json           # Your profile, technical level
++-- projects.json           # Registry: project hash -> name/path/remote
++-- observations.jsonl      # Global observations (fallback)
++-- instincts/
+|   +-- personal/           # Global auto-learned instincts
+|   +-- inherited/          # Global imported instincts
++-- evolved/
+|   +-- agents/             # Global generated agents
+|   +-- skills/             # Global generated skills
+|   +-- commands/           # Global generated commands
++-- projects/
+    +-- a1b2c3d4e5f6/       # Project hash (from git remote URL)
+    |   +-- project.json    # Per-project metadata mirror (id/name/root/remote)
+    |   +-- observations.jsonl
+    |   +-- observations.archive/
+    |   +-- instincts/
+    |   |   +-- personal/   # Project-specific auto-learned
+    |   |   +-- inherited/  # Project-specific imported
+    |   +-- evolved/
+    |       +-- skills/
+    |       +-- commands/
+    |       +-- agents/
+    +-- f6e5d4c3b2a1/       # Another project
+        +-- ...
+```
+
+## Scope Decision Guide
+
+| Pattern Type | Scope | Examples |
+|-------------|-------|---------|
+| Language/framework conventions | **project** | "Use React hooks", "Follow Django REST patterns" |
+| File structure preferences | **project** | "Tests in `__tests__`/", "Components in src/components/" |
+| Code style | **project** | "Use functional style", "Prefer dataclasses" |
+| Error handling strategies | **project** | "Use Result type for errors" |
+| Security practices | **global** | "Validate user input", "Sanitize SQL" |
+| General best practices | **global** | "Write tests first", "Always handle errors" |
+| Tool workflow preferences | **global** | "Grep before Edit", "Read before Write" |
+| Git practices | **global** | "Conventional commits", "Small focused commits" |
+
+## Instinct Promotion (Project -> Global)
+
+When the same instinct appears in multiple projects with high confidence, it's a candidate for promotion to global scope.
+
+**Auto-promotion criteria:**
+- Same instinct ID in 2+ projects
+- Average confidence >= 0.8
+
+**How to promote:**
+
+```bash
+# Promote a specific instinct
+python3 instinct-cli.py promote prefer-explicit-errors
+
+# Auto-promote all qualifying instincts
+python3 instinct-cli.py promote
+
+# Preview without changes
+python3 instinct-cli.py promote --dry-run
+```
+
+The `/evolve` command also suggests promotion candidates.
+
+## Confidence Scoring
+
+Confidence evolves over time:
+
+| Score | Meaning | Behavior |
+|-------|---------|----------|
+| 0.3 | Tentative | Suggested but not enforced |
+| 0.5 | Moderate | Applied when relevant |
+| 0.7 | Strong | Auto-approved for application |
+| 0.9 | Near-certain | Core behavior |
+
+**Confidence increases** when:
+- Pattern is repeatedly observed
+- User doesn't correct the suggested behavior
+- Similar instincts from other sources agree
+
+**Confidence decreases** when:
+- User explicitly corrects the behavior
+- Pattern isn't observed for extended periods
+- Contradicting evidence appears
+
+## Why Hooks vs Skills for Observation?
+
+> "v1 relied on skills to observe. Skills are probabilistic -- they fire ~50-80% of the time based on Claude's judgment."
+
+Hooks fire **100% of the time**, deterministically. This means:
+- Every tool call is observed
+- No patterns are missed
+- Learning is comprehensive
+
+## Backward Compatibility
+
+v2.1 is fully compatible with v2.0 and v1:
+- Existing global instincts can be migrated from `~/.claude/homunculus/instincts/` with `scripts/migrate-homunculus.sh`
+- Existing `~/.claude/skills/learned/` skills from v1 still work
+- Stop hook still runs (but now also feeds into v2)
+- Gradual migration: run both in parallel
+
+## Privacy
+
+- Observations stay **local** on your machine
+- Project-scoped instincts are isolated per project
+- Only **instincts** (patterns) can be exported — not raw observations
+- No actual code or conversation content is shared
+- You control what gets exported and promoted
+
+## Related
+
+- [ECC-Tools GitHub App](https://github.com/apps/ecc-tools) - Generate instincts from repo history
+- Homunculus - Community project that inspired the v2 instinct-based architecture (atomic observations, confidence scoring, instinct evolution pipeline)
+- [The Longform Guide](https://x.com/affaanmustafa/status/2014040193557471352) - Continuous learning section
+
+---
+
+*Instinct-based learning: teaching Claude your patterns, one project at a time.*