@rotifer/playground 0.8.0 → 0.8.5

package/dist/utils/display.js.map

@@ -1 +1 @@
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package/dist/utils/domain-suggest.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"domain-suggest.d.ts","sourceRoot":"","sources":["../../src/utils/domain-suggest.ts"],"names":[],"mappings":"AAYA,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,wBAAgB,eAAe,IAAI,WAAW,EAAE,CAW/C;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,WAAW,EAAE,GAAG,IAAI,CAO5D;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAC5B,QAAQ,EAAE,MAAM,EAChB,WAAW,CAAC,EAAE,MAAM,EACpB,KAAK,GAAE,MAAU,GAChB,WAAW,EAAE,CAmCf;AA0BD;;;GAGG;AACH,wBAAsB,2BAA2B,IAAI,OAAO,CAAC,IAAI,CAAC,CAsBjE"}

package/dist/utils/domain-suggest.js

@@ -7,6 +7,7 @@ exports.refreshDomainCacheFromCloud = refreshDomainCacheFromCloud;
 const node_fs_1 = require("node:fs");
 const node_path_1 = require("node:path");
 const client_js_1 = require("../cloud/client.js");
+const private_fs_js_1 = require("./private-fs.js");
 const ROTIFER_HOME = (0, node_path_1.join)(process.env.HOME || process.env.USERPROFILE || "/tmp", ".rotifer");
 const CACHE_FILE = (0, node_path_1.join)(ROTIFER_HOME, "domain_registry.json");
 const CACHE_MAX_AGE_MS = 24 * 60 * 60 * 1000; // 24h
@@ -25,10 +26,9 @@ function loadDomainCache() {
     }
 }
 function saveDomainCache(domains) {
-    if (!(0, node_fs_1.existsSync)(ROTIFER_HOME)) {
-        (0, node_fs_1.mkdirSync)(ROTIFER_HOME, { recursive: true });
-    }
+    (0, private_fs_js_1.ensurePrivateDir)(ROTIFER_HOME);
     (0, node_fs_1.writeFileSync)(CACHE_FILE, JSON.stringify({ updated_at: Date.now(), domains }, null, 2) + "\n");
+    (0, private_fs_js_1.tightenPrivateFile)(CACHE_FILE);
 }
 /**
  * Suggest domains from local cache based on gene name keywords.

package/dist/utils/domain-suggest.js.map

@@ -1 +1 @@
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+{"version":3,"file":"domain-suggest.js","sourceRoot":"","sources":["../../src/utils/domain-suggest.ts"],"names":[],"mappings":";;AAkBA,0CAWC;AAED,0CAOC;AAMD,wCAuCC;AA8BD,kEAsBC;AAvID,qCAAkE;AAClE,yCAAiC;AACjC,kDAAqD;AACrD,mDAAuE;AAEvE,MAAM,YAAY,GAAG,IAAA,gBAAI,EACvB,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,OAAO,CAAC,GAAG,CAAC,WAAW,IAAI,MAAM,EACrD,UAAU,CACX,CAAC;AACF,MAAM,UAAU,GAAG,IAAA,gBAAI,EAAC,YAAY,EAAE,sBAAsB,CAAC,CAAC;AAC9D,MAAM,gBAAgB,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAAI,CAAC,CAAC,MAAM;AAQpD,SAAgB,eAAe;IAC7B,IAAI,CAAC,IAAA,oBAAU,EAAC,UAAU,CAAC;QAAE,OAAO,EAAE,CAAC;IACvC,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,IAAA,sBAAY,EAAC,UAAU,EAAE,OAAO,CAAC,CAAC,CAAC;QAC1D,IAAI,GAAG,CAAC,UAAU,IAAI,IAAI,CAAC,GAAG,EAAE,GAAG,GAAG,CAAC,UAAU,GAAG,gBAAgB,EAAE,CAAC;YACrE,OAAO,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC;QAC3B,CAAC;QACD,OAAO,GAAG,CAAC,OAAO,IAAI,EAAE,CAAC;IAC3B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC;AAED,SAAgB,eAAe,CAAC,OAAsB;IACpD,IAAA,gCAAgB,EAAC,YAAY,CAAC,CAAC;IAC/B,IAAA,uBAAa,EACX,UAAU,EACV,IAAI,CAAC,SAAS,CAAC,EAAE,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,EAAE,OAAO,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,IAAI,CACpE,CAAC;IACF,IAAA,kCAAkB,EAAC,UAAU,CAAC,CAAC;AACjC,CAAC;AAED;;;GAGG;AACH,SAAgB,cAAc,CAC5B,QAAgB,EAChB,WAAoB,EACpB,QAAgB,CAAC;IAEjB,MAAM,KAAK,GAAG,eAAe,EAAE,CAAC;IAChC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IAElC,MAAM,QAAQ,GAAG,eAAe,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAC;IACxD,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IAErC,MAAM,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE;QACjC,IAAI,YAAY,GAAG,CAAC,CAAC;QACrB,MAAM,WAAW,GAAG,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAC5C,MAAM,SAAS,GAAG,CAAC,KAAK,CAAC,WAAW,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QAEvE,KAAK,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;YAC1B,KAAK,MAAM,EAAE,IAAI,WAAW,EAAE,CAAC;gBAC7B,IAAI,EAAE,KAAK,EAAE;oBAAE,YAAY,IAAI,EAAE,CAAC;qBAC7B,IAAI,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC,IAAI,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC;oBAAE,YAAY,IAAI,CAAC,CAAC;YACjE,CAAC;YACD,KAAK,MAAM,EAAE,IAAI,SAAS,EAAE,CAAC;gBAC3B,IAAI,EAAE,KAAK,EAAE;oBAAE,YAAY,IAAI,CAAC,CAAC;qBAC5B,IAAI,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC;oBAAE,YAAY,IAAI,CAAC,CAAC;YAC9C,CAAC;QACH,CAAC;QAED,MAAM,KAAK,GAAG,YAAY,GAAG,CAAC;YAC5B,CAAC,CAAC,YAAY,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,UAAU,EAAE,EAAE,CAAC,GAAG,GAAG;YACrD,CAAC,CAAC,CAAC,CAAC;QAEN,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC;IAC1B,CAAC,CAAC,CAAC;IAEH,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC;SAC1B,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC;SACjC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC;SACf,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;AACzB,CAAC;AAED,SAAS,eAAe,CAAC,IAAY,EAAE,WAAoB;IACzD,MAAM,KAAK,GAAG,IAAI;SACf,WAAW,EAAE;SACb,KAAK,CAAC,OAAO,CAAC;SACd,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAE/B,IAAI,WAAW,EAAE,CAAC;QAChB,MAAM,SAAS,GAAG,WAAW;aAC1B,WAAW,EAAE;aACb,KAAK,CAAC,KAAK,CAAC;aACZ,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACrD,KAAK,CAAC,IAAI,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IACvC,CAAC;IAED,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC;AAC7B,CAAC;AAED,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC;IACzB,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;IACnE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO;IACnE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM;IACjE,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM;CACtC,CAAC,CAAC;AAEH;;;GAGG;AACI,KAAK,UAAU,2BAA2B;IAC/C,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,IAAA,2BAAe,GAAE,CAAC;QACjC,IAAI,CAAC,MAAM,CAAC,QAAQ,IAAI,CAAC,MAAM,CAAC,OAAO;YAAE,OAAO;QAEhD,MAAM,IAAI,GAAG,MAAM,CAAC,QAAQ,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;QACjD,MAAM,GAAG,GAAG,GAAG,IAAI,+FAA+F,CAAC;QACnH,MAAM,GAAG,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE;YAC3B,OAAO,EAAE;gBACP,MAAM,EAAE,MAAM,CAAC,OAAO;gBACtB,cAAc,EAAE,kBAAkB;aACnC;SACF,CAAC,CAAC;QACH,IAAI,CAAC,GAAG,CAAC,EAAE;YAAE,OAAO;QAEpB,MAAM,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,IAAI,EAAE,CAAkB,CAAC;QACjD,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3C,eAAe,CAAC,IAAI,CAAC,CAAC;QACxB,CAAC;IACH,CAAC;IAAC,MAAM,CAAC;QACP,0BAA0B;IAC5B,CAAC;AACH,CAAC"}

package/dist/utils/javy-compiler.js

@@ -62,7 +62,11 @@ function compileTypeScriptToWasm(geneSrcPath, outputWasmPath) {
     const shimPath = (0, node_path_1.join)(tmpDir, "gene-shim.js");
     try {
         display.info("  Step 1/3: TypeScript → JavaScript (esbuild)");
-        (0, node_child_process_1.execSync)(`npx esbuild ${JSON.stringify(geneSrcPath)} --bundle --format=iife --global-name=__gene --outfile=${JSON.stringify(bundlePath)} --log-level=warning`, { stdio: "pipe", timeout: 30_000 });
+        (0, node_child_process_1.execFileSync)("npx", [
+            "esbuild", geneSrcPath,
+            "--bundle", "--format=iife", "--global-name=__gene",
+            `--outfile=${bundlePath}`, "--log-level=warning",
+        ], { stdio: "pipe", timeout: 30_000 });
         const bundleCode = (0, node_fs_1.readFileSync)(bundlePath, "utf-8");
         const bundleSize = Buffer.byteLength(bundleCode);
         display.info(`    Bundle: ${(bundleSize / 1024).toFixed(1)} KB`);
@@ -70,7 +74,9 @@ function compileTypeScriptToWasm(geneSrcPath, outputWasmPath) {
         const shimCode = WASI_SHIM_HEADER + bundleCode + "\n" + WASI_SHIM_FOOTER;
         (0, node_fs_1.writeFileSync)(shimPath, shimCode);
         display.info("  Step 3/3: JavaScript → WASM (Javy / QuickJS)");
-        (0, node_child_process_1.execSync)(`npx javy-cli compile ${JSON.stringify(shimPath)} -o ${JSON.stringify(outputWasmPath)}`, { stdio: "pipe", timeout: 60_000 });
+        (0, node_child_process_1.execFileSync)("npx", [
+            "javy-cli", "compile", shimPath, "-o", outputWasmPath,
+        ], { stdio: "pipe", timeout: 60_000 });
         const wasmSize = (0, node_fs_1.readFileSync)(outputWasmPath).length;
         const durationMs = Date.now() - startTime;
         display.success(`  WASM compiled: ${(wasmSize / 1024).toFixed(0)} KB (${durationMs}ms)`);
@@ -96,7 +102,7 @@ function compileTypeScriptToWasm(geneSrcPath, outputWasmPath) {
  */
 function isJavyAvailable() {
     try {
-        (0, node_child_process_1.execSync)("npx javy-cli --version", { stdio: "pipe", timeout: 30_000 });
+        (0, node_child_process_1.execFileSync)("npx", ["javy-cli", "--version"], { stdio: "pipe", timeout: 30_000 });
         return true;
     }
     catch {

package/dist/utils/javy-compiler.js.map

@@ -1 +1 @@
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+{"version":3,"file":"javy-compiler.js","sourceRoot":"","sources":["../../src/utils/javy-compiler.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AA4BA,0DA6CC;AAKD,0CAOC;AAMD,wCAMC;AAjGD,2DAAkD;AAClD,qCAAyF;AACzF,yCAA0C;AAC1C,sDAAwC;AAExC,MAAM,gBAAgB,GAAG;;;CAGxB,CAAC;AAEF,MAAM,gBAAgB,GAAG;;;;CAIxB,CAAC;AASF;;;;GAIG;AACH,SAAgB,uBAAuB,CACrC,WAAmB,EACnB,cAAsB;IAEtB,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAC7B,MAAM,MAAM,GAAG,IAAA,gBAAI,EAAC,IAAA,mBAAO,EAAC,cAAc,CAAC,EAAE,gBAAgB,CAAC,CAAC;IAC/D,IAAA,mBAAS,EAAC,MAAM,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAEvC,MAAM,UAAU,GAAG,IAAA,gBAAI,EAAC,MAAM,EAAE,WAAW,CAAC,CAAC;IAC7C,MAAM,QAAQ,GAAG,IAAA,gBAAI,EAAC,MAAM,EAAE,cAAc,CAAC,CAAC;IAE9C,IAAI,CAAC;QACH,OAAO,CAAC,IAAI,CAAC,+CAA+C,CAAC,CAAC;QAC9D,IAAA,iCAAY,EAAC,KAAK,EAAE;YAClB,SAAS,EAAE,WAAW;YACtB,UAAU,EAAE,eAAe,EAAE,sBAAsB;YACnD,aAAa,UAAU,EAAE,EAAE,qBAAqB;SACjD,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,CAAC,CAAC;QAEvC,MAAM,UAAU,GAAG,IAAA,sBAAY,EAAC,UAAU,EAAE,OAAO,CAAC,CAAC;QACrD,MAAM,UAAU,GAAG,MAAM,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;QACjD,OAAO,CAAC,IAAI,CAAC,eAAe,CAAC,UAAU,GAAG,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QAEjE,OAAO,CAAC,IAAI,CAAC,kCAAkC,CAAC,CAAC;QACjD,MAAM,QAAQ,GAAG,gBAAgB,GAAG,UAAU,GAAG,IAAI,GAAG,gBAAgB,CAAC;QACzE,IAAA,uBAAa,EAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;QAElC,OAAO,CAAC,IAAI,CAAC,gDAAgD,CAAC,CAAC;QAC/D,IAAA,iCAAY,EAAC,KAAK,EAAE;YAClB,UAAU,EAAE,SAAS,EAAE,QAAQ,EAAE,IAAI,EAAE,cAAc;SACtD,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,CAAC,CAAC;QAEvC,MAAM,QAAQ,GAAG,IAAA,sBAAY,EAAC,cAAc,CAAC,CAAC,MAAM,CAAC;QACrD,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS,CAAC;QAE1C,OAAO,CAAC,OAAO,CACb,oBAAoB,CAAC,QAAQ,GAAG,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,QAAQ,UAAU,KAAK,CACxE,CAAC;QAEF,OAAO,EAAE,QAAQ,EAAE,cAAc,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,EAAE,CAAC;IACxE,CAAC;YAAS,CAAC;QACT,IAAI,CAAC;YAAC,IAAA,oBAAU,EAAC,UAAU,CAAC,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;QACtD,IAAI,CAAC;YAAC,IAAA,oBAAU,EAAC,QAAQ,CAAC,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;QACpD,IAAI,CAAC;YAAC,OAAO,CAAC,SAAS,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;IACtE,CAAC;AACH,CAAC;AAED;;GAEG;AACH,SAAgB,eAAe;IAC7B,IAAI,CAAC;QACH,IAAA,iCAAY,EAAC,KAAK,EAAE,CAAC,UAAU,EAAE,WAAW,CAAC,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,CAAC,CAAC;QACnF,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,SAAgB,cAAc,CAAC,OAAe;IAC5C,KAAK,MAAM,IAAI,IAAI,CAAC,UAAU,EAAE,UAAU,CAAC,EAAE,CAAC;QAC5C,MAAM,CAAC,GAAG,IAAA,gBAAI,EAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QAC9B,IAAI,IAAA,oBAAU,EAAC,CAAC,CAAC;YAAE,OAAO,CAAC,CAAC;IAC9B,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC"}

package/dist/utils/open-browser.d.ts

@@ -1,10 +1,14 @@
 /**
- * Build the shell command to open a URL in the default browser.
+ * Get the browser-open binary and arguments for the current platform.
  * Exported separately for testability.
  */
-export declare function buildOpenCommand(url: string, platform: string): string;
+export declare function buildOpenCommand(url: string, platform: string): {
+    bin: string;
+    args: string[];
+};
 /**
  * Open a URL in the user's default browser, cross-platform.
+ * Returns true if the command was launched successfully, false on error.
  */
-export declare function openBrowser(url: string): void;
+export declare function openBrowser(url: string): boolean;
 //# sourceMappingURL=open-browser.d.ts.map

package/dist/utils/open-browser.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"open-browser.d.ts","sourceRoot":"","sources":["../../src/utils/open-browser.ts"],"names":[],"mappings":"AAEA;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAMtE;AAED;;GAEG;AACH,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,GAAG,IAAI,CAE7C"}
+{"version":3,"file":"open-browser.d.ts","sourceRoot":"","sources":["../../src/utils/open-browser.ts"],"names":[],"mappings":"AAEA;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,EAAE,CAAA;CAAE,CAM/F;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAWhD"}

package/dist/utils/open-browser.js

@@ -4,20 +4,31 @@ exports.buildOpenCommand = buildOpenCommand;
 exports.openBrowser = openBrowser;
 const node_child_process_1 = require("node:child_process");
 /**
- * Build the shell command to open a URL in the default browser.
+ * Get the browser-open binary and arguments for the current platform.
  * Exported separately for testability.
  */
 function buildOpenCommand(url, platform) {
     if (platform === "win32") {
-        return `start "" "${url}"`;
+        return { bin: "cmd", args: ["/c", "start", "", url] };
     }
     const bin = platform === "darwin" ? "open" : "xdg-open";
-    return `${bin} "${url}"`;
+    return { bin, args: [url] };
 }
 /**
  * Open a URL in the user's default browser, cross-platform.
+ * Returns true if the command was launched successfully, false on error.
  */
 function openBrowser(url) {
-    (0, node_child_process_1.exec)(buildOpenCommand(url, process.platform));
+    const { bin, args } = buildOpenCommand(url, process.platform);
+    try {
+        const child = (0, node_child_process_1.execFile)(bin, args);
+        let didFail = false;
+        child.on("error", () => { didFail = true; });
+        // Give the spawn a moment; if it errors synchronously we catch above
+        return !didFail;
+    }
+    catch {
+        return false;
+    }
 }
 //# sourceMappingURL=open-browser.js.map

package/dist/utils/open-browser.js.map

@@ -1 +1 @@
-{"version":3,"file":"open-browser.js","sourceRoot":"","sources":["../../src/utils/open-browser.ts"],"names":[],"mappings":";;AAMA,4CAMC;AAKD,kCAEC;AAnBD,2DAA0C;AAE1C;;;GAGG;AACH,SAAgB,gBAAgB,CAAC,GAAW,EAAE,QAAgB;IAC5D,IAAI,QAAQ,KAAK,OAAO,EAAE,CAAC;QACzB,OAAO,aAAa,GAAG,GAAG,CAAC;IAC7B,CAAC;IACD,MAAM,GAAG,GAAG,QAAQ,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,UAAU,CAAC;IACxD,OAAO,GAAG,GAAG,KAAK,GAAG,GAAG,CAAC;AAC3B,CAAC;AAED;;GAEG;AACH,SAAgB,WAAW,CAAC,GAAW;IACrC,IAAA,yBAAI,EAAC,gBAAgB,CAAC,GAAG,EAAE,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC;AAChD,CAAC"}
+{"version":3,"file":"open-browser.js","sourceRoot":"","sources":["../../src/utils/open-browser.ts"],"names":[],"mappings":";;AAMA,4CAMC;AAMD,kCAWC;AA7BD,2DAA8C;AAE9C;;;GAGG;AACH,SAAgB,gBAAgB,CAAC,GAAW,EAAE,QAAgB;IAC5D,IAAI,QAAQ,KAAK,OAAO,EAAE,CAAC;QACzB,OAAO,EAAE,GAAG,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,CAAC,EAAE,CAAC;IACxD,CAAC;IACD,MAAM,GAAG,GAAG,QAAQ,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,UAAU,CAAC;IACxD,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;AAC9B,CAAC;AAED;;;GAGG;AACH,SAAgB,WAAW,CAAC,GAAW;IACrC,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,gBAAgB,CAAC,GAAG,EAAE,OAAO,CAAC,QAAQ,CAAC,CAAC;IAC9D,IAAI,CAAC;QACH,MAAM,KAAK,GAAG,IAAA,6BAAQ,EAAC,GAAG,EAAE,IAAI,CAAC,CAAC;QAClC,IAAI,OAAO,GAAG,KAAK,CAAC;QACpB,KAAK,CAAC,EAAE,CAAC,OAAO,EAAE,GAAG,EAAE,GAAG,OAAO,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;QAC7C,qEAAqE;QACrE,OAAO,CAAC,OAAO,CAAC;IAClB,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC"}

package/dist/utils/palette.d.ts

@@ -0,0 +1,49 @@
+import chalk from "chalk";
+/**
+ * Bioluminescence brand palette (ADR-190)
+ * Inspired by rotifer chloroplast symbiosis bioluminescence.
+ */
+export declare const hex: {
+    readonly accent: "#00C9A7";
+    readonly accentBright: "#00FFD1";
+    readonly accentDim: "#009E84";
+    readonly brand: "#6366F1";
+    readonly info: "#6EC6FF";
+    readonly success: "#4ADE80";
+    readonly warn: "#FBBF24";
+    readonly error: "#F87171";
+    readonly muted: "#94A3B8";
+};
+/**
+ * Semantic color functions. Uses getters so that chalk.level changes
+ * (e.g. --plain sets level=0) take effect at call time, not import time.
+ * chalk v4's .hex() captures level at creation — getters recreate per access.
+ */
+export declare const c: {
+    readonly accent: chalk.Chalk;
+    readonly accentBright: chalk.Chalk;
+    readonly accentDim: chalk.Chalk;
+    readonly brand: chalk.Chalk;
+    readonly info: chalk.Chalk;
+    readonly success: chalk.Chalk;
+    readonly warn: chalk.Chalk;
+    readonly error: chalk.Chalk;
+    readonly muted: chalk.Chalk;
+    readonly bold: chalk.Chalk;
+    readonly dim: chalk.Chalk;
+};
+export declare const icon: {
+    readonly success: "✓";
+    readonly error: "✗";
+    readonly warn: "⚠";
+    readonly info: "ℹ";
+    readonly arrow: "→";
+    readonly bullet: "•";
+    readonly dash: "─";
+    readonly up: "↑";
+    readonly down: "↓";
+};
+export declare function fidelityColor(fidelity: string): string;
+export declare function scoreColor(score: number | null | undefined): string;
+export declare function scoreColor2(score: number | null | undefined): string;
+//# sourceMappingURL=palette.d.ts.map

package/dist/utils/palette.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"palette.d.ts","sourceRoot":"","sources":["../../src/utils/palette.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAE1B;;;GAGG;AACH,eAAO,MAAM,GAAG;;;;;;;;;;CAUN,CAAC;AAEX;;;;GAIG;AACH,eAAO,MAAM,CAAC;;;;;;;;;;;;CAYb,CAAC;AAEF,eAAO,MAAM,IAAI;;;;;;;;;;CAUP,CAAC;AAEX,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAItD;AAED,wBAAgB,UAAU,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,GAAG,MAAM,CAKnE;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,GAAG,MAAM,CAKpE"}

package/dist/utils/palette.js

@@ -0,0 +1,80 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.icon = exports.c = exports.hex = void 0;
+exports.fidelityColor = fidelityColor;
+exports.scoreColor = scoreColor;
+exports.scoreColor2 = scoreColor2;
+const chalk_1 = __importDefault(require("chalk"));
+/**
+ * Bioluminescence brand palette (ADR-190)
+ * Inspired by rotifer chloroplast symbiosis bioluminescence.
+ */
+exports.hex = {
+    accent: "#00C9A7",
+    accentBright: "#00FFD1",
+    accentDim: "#009E84",
+    brand: "#6366F1",
+    info: "#6EC6FF",
+    success: "#4ADE80",
+    warn: "#FBBF24",
+    error: "#F87171",
+    muted: "#94A3B8",
+};
+/**
+ * Semantic color functions. Uses getters so that chalk.level changes
+ * (e.g. --plain sets level=0) take effect at call time, not import time.
+ * chalk v4's .hex() captures level at creation — getters recreate per access.
+ */
+exports.c = {
+    get accent() { return chalk_1.default.hex(exports.hex.accent); },
+    get accentBright() { return chalk_1.default.hex(exports.hex.accentBright); },
+    get accentDim() { return chalk_1.default.hex(exports.hex.accentDim); },
+    get brand() { return chalk_1.default.hex(exports.hex.brand); },
+    get info() { return chalk_1.default.hex(exports.hex.info); },
+    get success() { return chalk_1.default.hex(exports.hex.success); },
+    get warn() { return chalk_1.default.hex(exports.hex.warn); },
+    get error() { return chalk_1.default.hex(exports.hex.error); },
+    get muted() { return chalk_1.default.hex(exports.hex.muted); },
+    get bold() { return chalk_1.default.bold; },
+    get dim() { return chalk_1.default.dim; },
+};
+exports.icon = {
+    success: "✓",
+    error: "✗",
+    warn: "⚠",
+    info: "ℹ",
+    arrow: "→",
+    bullet: "•",
+    dash: "─",
+    up: "↑",
+    down: "↓",
+};
+function fidelityColor(fidelity) {
+    if (fidelity === "Native")
+        return exports.c.success(fidelity);
+    if (fidelity === "Hybrid")
+        return exports.c.brand(fidelity);
+    return exports.c.muted(fidelity);
+}
+function scoreColor(score) {
+    if (score == null)
+        return exports.c.muted("—");
+    if (score >= 0.7)
+        return exports.c.success(score.toFixed(4));
+    if (score >= 0.3)
+        return exports.c.warn(score.toFixed(4));
+    return exports.c.muted(score.toFixed(4));
+}
+function scoreColor2(score) {
+    if (score == null)
+        return exports.c.muted("—");
+    if (score >= 0.7)
+        return exports.c.success(score.toFixed(2));
+    if (score >= 0.3)
+        return exports.c.warn(score.toFixed(2));
+    return exports.c.muted(score.toFixed(2));
+}
+//# sourceMappingURL=palette.js.map

package/dist/utils/palette.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"palette.js","sourceRoot":"","sources":["../../src/utils/palette.ts"],"names":[],"mappings":";;;;;;AAiDA,sCAIC;AAED,gCAKC;AAED,kCAKC;AAnED,kDAA0B;AAE1B;;;GAGG;AACU,QAAA,GAAG,GAAG;IACjB,MAAM,EAAQ,SAAS;IACvB,YAAY,EAAE,SAAS;IACvB,SAAS,EAAK,SAAS;IACvB,KAAK,EAAS,SAAS;IACvB,IAAI,EAAU,SAAS;IACvB,OAAO,EAAO,SAAS;IACvB,IAAI,EAAU,SAAS;IACvB,KAAK,EAAS,SAAS;IACvB,KAAK,EAAS,SAAS;CACf,CAAC;AAEX;;;;GAIG;AACU,QAAA,CAAC,GAAG;IACf,IAAI,MAAM,KAAW,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;IACpD,IAAI,YAAY,KAAK,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;IAC1D,IAAI,SAAS,KAAQ,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;IACvD,IAAI,KAAK,KAAY,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IACnD,IAAI,IAAI,KAAa,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClD,IAAI,OAAO,KAAU,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;IACrD,IAAI,IAAI,KAAa,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClD,IAAI,KAAK,KAAY,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IACnD,IAAI,KAAK,KAAY,OAAO,eAAK,CAAC,GAAG,CAAC,WAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IACnD,IAAI,IAAI,KAAa,OAAO,eAAK,CAAC,IAAI,CAAC,CAAC,CAAC;IACzC,IAAI,GAAG,KAAc,OAAO,eAAK,CAAC,GAAG,CAAC,CAAC,CAAC;CACzC,CAAC;AAEW,QAAA,IAAI,GAAG;IAClB,OAAO,EAAE,GAAG;IACZ,KAAK,EAAI,GAAG;IACZ,IAAI,EAAK,GAAG;IACZ,IAAI,EAAK,GAAG;IACZ,KAAK,EAAI,GAAG;IACZ,MAAM,EAAG,GAAG;IACZ,IAAI,EAAK,GAAG;IACZ,EAAE,EAAO,GAAG;IACZ,IAAI,EAAK,GAAG;CACJ,CAAC;AAEX,SAAgB,aAAa,CAAC,QAAgB;IAC5C,IAAI,QAAQ,KAAK,QAAQ;QAAE,OAAO,SAAC,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;IACtD,IAAI,QAAQ,KAAK,QAAQ;QAAE,OAAO,SAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;IACpD,OAAO,SAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;AAC3B,CAAC;AAED,SAAgB,UAAU,CAAC,KAAgC;IACzD,IAAI,KAAK,IAAI,IAAI;QAAE,OAAO,SAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IACvC,IAAI,KAAK,IAAI,GAAG;QAAE,OAAO,SAAC,CAAC,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IACrD,IAAI,KAAK,IAAI,GAAG;QAAE,OAAO,SAAC,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IAClD,OAAO,SAAC,CAAC,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;AACnC,CAAC;AAED,SAAgB,WAAW,CAAC,KAAgC;IAC1D,IAAI,KAAK,IAAI,IAAI;QAAE,OAAO,SAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IACvC,IAAI,KAAK,IAAI,GAAG;QAAE,OAAO,SAAC,CAAC,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IACrD,IAAI,KAAK,IAAI,GAAG;QAAE,OAAO,SAAC,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IAClD,OAAO,SAAC,CAAC,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;AACnC,CAAC"}

package/dist/utils/private-fs.d.ts

@@ -0,0 +1,3 @@
+export declare function ensurePrivateDir(dirPath: string): void;
+export declare function tightenPrivateFile(filePath: string, mode?: number): void;
+//# sourceMappingURL=private-fs.d.ts.map

package/dist/utils/private-fs.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"private-fs.d.ts","sourceRoot":"","sources":["../../src/utils/private-fs.ts"],"names":[],"mappings":"AAEA,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI,CAUtD;AAED,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,GAAE,MAAc,GAAG,IAAI,CAM/E"}

package/dist/utils/private-fs.js

@@ -0,0 +1,25 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ensurePrivateDir = ensurePrivateDir;
+exports.tightenPrivateFile = tightenPrivateFile;
+const node_fs_1 = require("node:fs");
+function ensurePrivateDir(dirPath) {
+    if (!(0, node_fs_1.existsSync)(dirPath)) {
+        (0, node_fs_1.mkdirSync)(dirPath, { recursive: true, mode: 0o700 });
+    }
+    try {
+        (0, node_fs_1.chmodSync)(dirPath, 0o700);
+    }
+    catch {
+        // Best-effort hardening on existing directories.
+    }
+}
+function tightenPrivateFile(filePath, mode = 0o600) {
+    try {
+        (0, node_fs_1.chmodSync)(filePath, mode);
+    }
+    catch {
+        // Best-effort hardening on files that were just created or updated.
+    }
+}
+//# sourceMappingURL=private-fs.js.map

package/dist/utils/private-fs.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"private-fs.js","sourceRoot":"","sources":["../../src/utils/private-fs.ts"],"names":[],"mappings":";;AAEA,4CAUC;AAED,gDAMC;AApBD,qCAA2D;AAE3D,SAAgB,gBAAgB,CAAC,OAAe;IAC9C,IAAI,CAAC,IAAA,oBAAU,EAAC,OAAO,CAAC,EAAE,CAAC;QACzB,IAAA,mBAAS,EAAC,OAAO,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;IACvD,CAAC;IAED,IAAI,CAAC;QACH,IAAA,mBAAS,EAAC,OAAO,EAAE,KAAK,CAAC,CAAC;IAC5B,CAAC;IAAC,MAAM,CAAC;QACP,iDAAiD;IACnD,CAAC;AACH,CAAC;AAED,SAAgB,kBAAkB,CAAC,QAAgB,EAAE,OAAe,KAAK;IACvE,IAAI,CAAC;QACH,IAAA,mBAAS,EAAC,QAAQ,EAAE,IAAI,CAAC,CAAC;IAC5B,CAAC;IAAC,MAAM,CAAC;QACP,oEAAoE;IACtE,CAAC;AACH,CAAC"}

package/dist/utils/project-root.d.ts

@@ -0,0 +1,2 @@
+export declare function requireProjectRoot(): string;
+//# sourceMappingURL=project-root.d.ts.map

package/dist/utils/project-root.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"project-root.d.ts","sourceRoot":"","sources":["../../src/utils/project-root.ts"],"names":[],"mappings":"AAGA,wBAAgB,kBAAkB,IAAI,MAAM,CAS3C"}

package/dist/utils/project-root.js

@@ -0,0 +1,49 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.requireProjectRoot = requireProjectRoot;
+const display = __importStar(require("./display.js"));
+const config_js_1 = require("./config.js");
+function requireProjectRoot() {
+    try {
+        return (0, config_js_1.getProjectRoot)();
+    }
+    catch {
+        display.error("Not in a Rotifer project. Run 'rotifer init' first.");
+        process.exit(1);
+    }
+    throw new Error("unreachable");
+}
+//# sourceMappingURL=project-root.js.map

package/dist/utils/project-root.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"project-root.js","sourceRoot":"","sources":["../../src/utils/project-root.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAGA,gDASC;AAZD,sDAAwC;AACxC,2CAA6C;AAE7C,SAAgB,kBAAkB;IAChC,IAAI,CAAC;QACH,OAAO,IAAA,0BAAc,GAAE,CAAC;IAC1B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,CAAC,KAAK,CAAC,qDAAqD,CAAC,CAAC;QACrE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,IAAI,KAAK,CAAC,aAAa,CAAC,CAAC;AACjC,CAAC"}

package/dist/utils/run-logger.d.ts

@@ -0,0 +1,24 @@
+interface GeneExecutionMeta {
+    geneName: string;
+    success: boolean;
+    durationMs: number;
+    inputSize: number;
+    outputSize: number;
+    error?: string;
+    resourceCost?: number;
+}
+export declare function logGeneExecution(meta: GeneExecutionMeta): void;
+export declare function getLogDir(): string;
+export interface RunLogEntry {
+    geneId: string;
+    timestamp: string;
+    success: boolean;
+    durationMs: number;
+    inputSize: number;
+    outputSize: number;
+    error?: string;
+    resourceCost?: number;
+}
+export declare function readRunLogs(geneName: string): RunLogEntry[];
+export {};
+//# sourceMappingURL=run-logger.d.ts.map

package/dist/utils/run-logger.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"run-logger.d.ts","sourceRoot":"","sources":["../../src/utils/run-logger.ts"],"names":[],"mappings":"AAQA,UAAU,iBAAiB;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,iBAAiB,GAAG,IAAI,CA8B9D;AAED,wBAAgB,SAAS,IAAI,MAAM,CAElC;AAED,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,OAAO,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED,wBAAgB,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,WAAW,EAAE,CAiB3D"}

package/dist/utils/run-logger.js

@@ -0,0 +1,70 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.logGeneExecution = logGeneExecution;
+exports.getLogDir = getLogDir;
+exports.readRunLogs = readRunLogs;
+const node_fs_1 = require("node:fs");
+const node_path_1 = require("node:path");
+const node_os_1 = require("node:os");
+const private_fs_js_1 = require("./private-fs.js");
+const MAX_LOG_SIZE = 10 * 1024 * 1024; // 10MB rotation
+const LOG_DIR = (0, node_path_1.join)((0, node_os_1.homedir)(), ".rotifer", "run-logs");
+function logGeneExecution(meta) {
+    try {
+        (0, private_fs_js_1.ensurePrivateDir)(LOG_DIR);
+        const logFile = (0, node_path_1.join)(LOG_DIR, `${meta.geneName}.jsonl`);
+        if ((0, node_fs_1.existsSync)(logFile)) {
+            const stats = (0, node_fs_1.statSync)(logFile);
+            if (stats.size > MAX_LOG_SIZE) {
+                const rotated = logFile + ".old";
+                try {
+                    (0, node_fs_1.renameSync)(logFile, rotated);
+                }
+                catch { /* best-effort */ }
+            }
+        }
+        const entry = {
+            geneId: meta.geneName,
+            timestamp: new Date().toISOString(),
+            success: meta.success,
+            durationMs: Math.round(meta.durationMs),
+            inputSize: meta.inputSize,
+            outputSize: meta.outputSize,
+            error: meta.error || undefined,
+            resourceCost: meta.resourceCost || undefined,
+        };
+        (0, node_fs_1.appendFileSync)(logFile, JSON.stringify(entry) + "\n", { mode: 0o600 });
+        (0, private_fs_js_1.tightenPrivateFile)(logFile);
+    }
+    catch {
+        // Zero-disruption: never throw from logging
+    }
+}
+function getLogDir() {
+    return LOG_DIR;
+}
+function readRunLogs(geneName) {
+    const logFile = (0, node_path_1.join)(LOG_DIR, `${geneName}.jsonl`);
+    if (!(0, node_fs_1.existsSync)(logFile))
+        return [];
+    try {
+        const { readFileSync } = require("node:fs");
+        const content = readFileSync(logFile, "utf-8");
+        return content
+            .split("\n")
+            .filter((line) => line.trim())
+            .map((line) => {
+            try {
+                return JSON.parse(line);
+            }
+            catch {
+                return null;
+            }
+        })
+            .filter(Boolean);
+    }
+    catch {
+        return [];
+    }
+}
+//# sourceMappingURL=run-logger.js.map

package/dist/utils/run-logger.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"run-logger.js","sourceRoot":"","sources":["../../src/utils/run-logger.ts"],"names":[],"mappings":";;AAkBA,4CA8BC;AAED,8BAEC;AAaD,kCAiBC;AAlFD,qCAA2E;AAC3E,yCAAiC;AACjC,qCAAkC;AAClC,mDAAuE;AAEvE,MAAM,YAAY,GAAG,EAAE,GAAG,IAAI,GAAG,IAAI,CAAC,CAAC,gBAAgB;AACvD,MAAM,OAAO,GAAG,IAAA,gBAAI,EAAC,IAAA,iBAAO,GAAE,EAAE,UAAU,EAAE,UAAU,CAAC,CAAC;AAYxD,SAAgB,gBAAgB,CAAC,IAAuB;IACtD,IAAI,CAAC;QACH,IAAA,gCAAgB,EAAC,OAAO,CAAC,CAAC;QAE1B,MAAM,OAAO,GAAG,IAAA,gBAAI,EAAC,OAAO,EAAE,GAAG,IAAI,CAAC,QAAQ,QAAQ,CAAC,CAAC;QAExD,IAAI,IAAA,oBAAU,EAAC,OAAO,CAAC,EAAE,CAAC;YACxB,MAAM,KAAK,GAAG,IAAA,kBAAQ,EAAC,OAAO,CAAC,CAAC;YAChC,IAAI,KAAK,CAAC,IAAI,GAAG,YAAY,EAAE,CAAC;gBAC9B,MAAM,OAAO,GAAG,OAAO,GAAG,MAAM,CAAC;gBACjC,IAAI,CAAC;oBAAC,IAAA,oBAAU,EAAC,OAAO,EAAE,OAAO,CAAC,CAAC;gBAAC,CAAC;gBAAC,MAAM,CAAC,CAAC,iBAAiB,CAAC,CAAC;YACnE,CAAC;QACH,CAAC;QAED,MAAM,KAAK,GAAG;YACZ,MAAM,EAAE,IAAI,CAAC,QAAQ;YACrB,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACnC,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,UAAU,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC;YACvC,SAAS,EAAE,IAAI,CAAC,SAAS;YACzB,UAAU,EAAE,IAAI,CAAC,UAAU;YAC3B,KAAK,EAAE,IAAI,CAAC,KAAK,IAAI,SAAS;YAC9B,YAAY,EAAE,IAAI,CAAC,YAAY,IAAI,SAAS;SAC7C,CAAC;QAEF,IAAA,wBAAc,EAAC,OAAO,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,IAAI,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;QACvE,IAAA,kCAAkB,EAAC,OAAO,CAAC,CAAC;IAC9B,CAAC;IAAC,MAAM,CAAC;QACP,4CAA4C;IAC9C,CAAC;AACH,CAAC;AAED,SAAgB,SAAS;IACvB,OAAO,OAAO,CAAC;AACjB,CAAC;AAaD,SAAgB,WAAW,CAAC,QAAgB;IAC1C,MAAM,OAAO,GAAG,IAAA,gBAAI,EAAC,OAAO,EAAE,GAAG,QAAQ,QAAQ,CAAC,CAAC;IACnD,IAAI,CAAC,IAAA,oBAAU,EAAC,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;IAEpC,IAAI,CAAC;QACH,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC;QAC5C,MAAM,OAAO,GAAG,YAAY,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QAC/C,OAAO,OAAO;aACX,KAAK,CAAC,IAAI,CAAC;aACX,MAAM,CAAC,CAAC,IAAY,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;aACrC,GAAG,CAAC,CAAC,IAAY,EAAE,EAAE;YACpB,IAAI,CAAC;gBAAC,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC;gBAAC,OAAO,IAAI,CAAC;YAAC,CAAC;QACzD,CAAC,CAAC;aACD,MAAM,CAAC,OAAO,CAAkB,CAAC;IACtC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC"}

package/dist/utils/update-check.d.ts

@@ -0,0 +1,20 @@
+export declare function isMajorUpgrade(current: string, latest: string): boolean;
+export interface UpdateInfo {
+    current: string;
+    latest: string;
+    isMajor: boolean;
+}
+/**
+ * Non-blocking version check against npm registry.
+ * Returns update info if a newer version exists, null otherwise.
+ * Caches results for 24 hours. Never throws — fails silently.
+ */
+export declare function checkForUpdate(pkgName: string, currentVersion: string): Promise<UpdateInfo | null>;
+/**
+ * Synchronous cache-only check. Returns UpdateInfo if cache is fresh and
+ * a newer version exists, null otherwise. Never hits the network.
+ * Use this to register process.on("exit") handlers that survive process.exit().
+ */
+export declare function checkCacheSync(pkgName: string, currentVersion: string): UpdateInfo | null;
+export declare function printUpdateNotification(info: UpdateInfo, pkgName: string): void;
+//# sourceMappingURL=update-check.d.ts.map

package/dist/utils/update-check.d.ts.map

@@ -0,0 +1 @@
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