@research-copilot/plugin 1.1.16 → 1.1.18

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (799) hide show
  1. package/dist/.claude-plugin/plugin.json +1 -1
  2. package/dist/.codex-plugin/plugin.toml +1 -1
  3. package/dist/.cursor-plugin/plugin.json +1 -1
  4. package/dist/.gemini-plugin/plugin.json +1 -1
  5. package/dist/.opencode-plugin/plugin.json +1 -1
  6. package/dist/.windsurf-plugin/plugin.json +1 -1
  7. package/dist/skills/ablation-planner/SKILL.md +126 -0
  8. package/dist/skills/alphaxiv/SKILL.md +186 -0
  9. package/dist/skills/analyze-results/SKILL.md +45 -0
  10. package/dist/skills/arxiv/SKILL.md +210 -0
  11. package/dist/skills/auto-paper-improvement-loop/SKILL.md +574 -0
  12. package/dist/skills/auto-review-loop/SKILL.md +370 -0
  13. package/dist/skills/auto-review-loop-llm/SKILL.md +247 -0
  14. package/dist/skills/auto-review-loop-minimax/SKILL.md +290 -0
  15. package/dist/skills/benchmark-paper-template/SKILL.md +142 -0
  16. package/dist/skills/benchmark-paper-template/references/benchmark-design.md +180 -0
  17. package/dist/skills/benchmark-paper-template/references/checklist.md +113 -0
  18. package/dist/skills/benchmark-paper-template/references/construction-pipeline.md +127 -0
  19. package/dist/skills/benchmark-paper-template/references/experiments.md +159 -0
  20. package/dist/skills/benchmark-paper-template/references/gap-analysis.md +86 -0
  21. package/dist/skills/benchmark-paper-template/references/instantiation-template.md +194 -0
  22. package/dist/skills/benchmark-paper-template/references/orchestrator-notes.md +96 -0
  23. package/dist/skills/benchmark-paper-template/references/paper-structure.md +209 -0
  24. package/dist/skills/citation-audit/SKILL.md +494 -0
  25. package/dist/skills/claims-drafting/SKILL.md +239 -0
  26. package/dist/skills/comm-lit-review/SKILL.md +299 -0
  27. package/dist/skills/comm-lit-review/references/domain-taxonomy.md +57 -0
  28. package/dist/skills/comm-lit-review/references/output-template.md +37 -0
  29. package/dist/skills/comm-lit-review/references/source-policy.md +99 -0
  30. package/dist/skills/comm-lit-review/references/venue-tiering.md +112 -0
  31. package/dist/skills/composer/SKILL.md +840 -0
  32. package/dist/skills/composer/references/section_guides.md +675 -0
  33. package/dist/skills/composer/references/writing_standards.md +629 -0
  34. package/dist/skills/composer/scripts/chapter_quality_check.py +470 -0
  35. package/dist/skills/composer/scripts/final_evaluation.py +550 -0
  36. package/dist/skills/deepxiv/SKILL.md +142 -0
  37. package/dist/skills/dse-loop/SKILL.md +277 -0
  38. package/dist/skills/embodiment-description/SKILL.md +129 -0
  39. package/dist/skills/exa-search/SKILL.md +192 -0
  40. package/dist/skills/experiment-audit/SKILL.md +262 -0
  41. package/dist/skills/experiment-bridge/SKILL.md +316 -0
  42. package/dist/skills/experiment-plan/SKILL.md +249 -0
  43. package/dist/skills/experiment-queue/SKILL.md +380 -0
  44. package/dist/skills/experiment-queue/scripts/build_manifest.py +142 -0
  45. package/dist/skills/experiment-queue/scripts/queue_manager.py +426 -0
  46. package/dist/skills/feishu-notify/SKILL.md +155 -0
  47. package/dist/skills/figure-description/SKILL.md +138 -0
  48. package/dist/skills/figure-designer/SKILL.md +207 -0
  49. package/dist/skills/figure-designer/references/design-rules.md +99 -0
  50. package/dist/skills/figure-designer/references/experimental-results.md +127 -0
  51. package/dist/skills/figure-designer/references/motivated-example.md +138 -0
  52. package/dist/skills/figure-designer/references/solution-overview.md +145 -0
  53. package/dist/skills/figure-designer/references/tools.md +124 -0
  54. package/dist/skills/figure-spec/SKILL.md +252 -0
  55. package/dist/skills/figure-spec/scripts/figure_renderer.py +799 -0
  56. package/dist/skills/formula-derivation/SKILL.md +280 -0
  57. package/dist/skills/gemini-search/SKILL.md +205 -0
  58. package/dist/skills/grant-proposal/SKILL.md +625 -0
  59. package/dist/skills/humanizer/AGENTS.md +25 -0
  60. package/dist/skills/humanizer/SKILL.md +621 -0
  61. package/dist/skills/idea-creator/SKILL.md +311 -0
  62. package/dist/skills/idea-discovery/SKILL.md +340 -0
  63. package/dist/skills/idea-discovery-robot/SKILL.md +362 -0
  64. package/dist/skills/idea-evaluator/SKILL.md +265 -0
  65. package/dist/skills/idea-evaluator/references/fatal-flaws.md +192 -0
  66. package/dist/skills/idea-evaluator/references/five-dimensions.md +251 -0
  67. package/dist/skills/idea-evaluator/references/lifecycle-capability-matching.md +177 -0
  68. package/dist/skills/idea-evaluator/references/paradigm-elephant.md +112 -0
  69. package/dist/skills/idea-evaluator/references/paradigm-examples.md +107 -0
  70. package/dist/skills/idea-evaluator/references/paradigm-first-principles.md +115 -0
  71. package/dist/skills/idea-evaluator/references/paradigm-hamming.md +137 -0
  72. package/dist/skills/idea-evaluator/references/paradigm-shift-probe.md +160 -0
  73. package/dist/skills/idea-evaluator/references/paradigm-technology-cycle.md +116 -0
  74. package/dist/skills/idea-evaluator/references/worked-examples.md +206 -0
  75. package/dist/skills/interview-cheatsheet/SKILL.md +245 -0
  76. package/dist/skills/intro-drafter/SKILL.md +250 -0
  77. package/dist/skills/intro-drafter/references/contribution-patterns.md +116 -0
  78. package/dist/skills/intro-drafter/references/flowchart.md +204 -0
  79. package/dist/skills/intro-drafter/references/paper-types.md +155 -0
  80. package/dist/skills/intro-drafter/references/running-example.md +133 -0
  81. package/dist/skills/intro-drafter/references/worked-examples.md +161 -0
  82. package/dist/skills/invention-structuring/SKILL.md +188 -0
  83. package/dist/skills/jurisdiction-format/SKILL.md +192 -0
  84. package/dist/skills/kill-argument/SKILL.md +384 -0
  85. package/dist/skills/llm-wiki/.mise.toml +2 -0
  86. package/dist/skills/llm-wiki/.nvmrc +1 -0
  87. package/dist/skills/llm-wiki/AGENTS.md +132 -0
  88. package/dist/skills/llm-wiki/CHANGELOG.md +459 -0
  89. package/dist/skills/llm-wiki/CLAUDE.md +109 -0
  90. package/dist/skills/llm-wiki/HERMES.md +44 -0
  91. package/dist/skills/llm-wiki/SKILL.md +1133 -0
  92. package/dist/skills/llm-wiki/assets/graph-demo.gif +0 -0
  93. package/dist/skills/llm-wiki/assets/graph-preview.png +0 -0
  94. package/dist/skills/llm-wiki/deps/LICENSE-d3.txt +13 -0
  95. package/dist/skills/llm-wiki/deps/LICENSE-marked.txt +44 -0
  96. package/dist/skills/llm-wiki/deps/LICENSE-purify.txt +568 -0
  97. package/{LICENSE → dist/skills/llm-wiki/deps/LICENSE-roughjs.txt} +1 -1
  98. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/SKILL.md +261 -0
  99. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/references/config/first-time-setup.md +106 -0
  100. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/cdp.ts +179 -0
  101. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/constants.ts +13 -0
  102. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/defuddle-converter.ts +58 -0
  103. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/html-to-markdown.ts +135 -0
  104. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/legacy-converter.ts +629 -0
  105. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/main.ts +314 -0
  106. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/markdown-conversion-shared.ts +305 -0
  107. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/media-localizer.ts +317 -0
  108. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/package.json +14 -0
  109. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/paths.ts +29 -0
  110. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/package.json +9 -0
  111. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/src/index.test.ts +307 -0
  112. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/src/index.ts +523 -0
  113. package/dist/skills/llm-wiki/deps/d3.min.js +2 -0
  114. package/dist/skills/llm-wiki/deps/marked.min.js +6 -0
  115. package/dist/skills/llm-wiki/deps/purify.min.js +3 -0
  116. package/dist/skills/llm-wiki/deps/rough.min.js +7 -0
  117. package/dist/skills/llm-wiki/deps/youtube-transcript/SKILL.md +47 -0
  118. package/dist/skills/llm-wiki/deps/youtube-transcript/scripts/get_transcript.py +72 -0
  119. package/dist/skills/llm-wiki/docs/design/oriental-atlas/DESIGN.md +183 -0
  120. package/dist/skills/llm-wiki/docs/design/oriental-atlas/design-brief.md +170 -0
  121. package/dist/skills/llm-wiki/docs/design/oriental-atlas/oriental-editorial-atlas.html +1908 -0
  122. package/dist/skills/llm-wiki/docs/design/oriental-atlas/reviews/result-review.md +68 -0
  123. package/dist/skills/llm-wiki/docs/plans/2026-06-15-omp-tool-status-events-phased-plan.md +655 -0
  124. package/dist/skills/llm-wiki/docs/plans/2026-06-15-omp-tool-status-events-progress.json +913 -0
  125. package/dist/skills/llm-wiki/docs/spark/2026-06-15-omp-tool-status-events-design.md +174 -0
  126. package/dist/skills/llm-wiki/install.ps1 +87 -0
  127. package/dist/skills/llm-wiki/install.sh +722 -0
  128. package/dist/skills/llm-wiki/package-lock.json +10309 -0
  129. package/dist/skills/llm-wiki/package.json +24 -0
  130. package/dist/skills/llm-wiki/packages/graph-engine/package.json +33 -0
  131. package/dist/skills/llm-wiki/packages/graph-engine/src/anim/.gitkeep +1 -0
  132. package/dist/skills/llm-wiki/packages/graph-engine/src/anim/index.ts +179 -0
  133. package/dist/skills/llm-wiki/packages/graph-engine/src/diff.ts +121 -0
  134. package/dist/skills/llm-wiki/packages/graph-engine/src/graph-node.ts +37 -0
  135. package/dist/skills/llm-wiki/packages/graph-engine/src/index.ts +140 -0
  136. package/dist/skills/llm-wiki/packages/graph-engine/src/model/atlas.ts +18 -0
  137. package/dist/skills/llm-wiki/packages/graph-engine/src/model/index.ts +6 -0
  138. package/dist/skills/llm-wiki/packages/graph-engine/src/model/labels.ts +11 -0
  139. package/dist/skills/llm-wiki/packages/graph-engine/src/model/learning.ts +8 -0
  140. package/dist/skills/llm-wiki/packages/graph-engine/src/model/legacy-helpers.ts +1373 -0
  141. package/dist/skills/llm-wiki/packages/graph-engine/src/model/queue.ts +7 -0
  142. package/dist/skills/llm-wiki/packages/graph-engine/src/model/storage.ts +4 -0
  143. package/dist/skills/llm-wiki/packages/graph-engine/src/model/visibility.ts +9 -0
  144. package/dist/skills/llm-wiki/packages/graph-engine/src/render/.gitkeep +1 -0
  145. package/dist/skills/llm-wiki/packages/graph-engine/src/render/index.ts +59 -0
  146. package/dist/skills/llm-wiki/packages/graph-engine/src/render/legend.ts +25 -0
  147. package/dist/skills/llm-wiki/packages/graph-engine/src/render/model.ts +593 -0
  148. package/dist/skills/llm-wiki/packages/graph-engine/src/render/preview.ts +65 -0
  149. package/dist/skills/llm-wiki/packages/graph-engine/src/render/search.ts +48 -0
  150. package/dist/skills/llm-wiki/packages/graph-engine/src/render/static-renderer.ts +2783 -0
  151. package/dist/skills/llm-wiki/packages/graph-engine/src/render/toolbar.ts +40 -0
  152. package/dist/skills/llm-wiki/packages/graph-engine/src/render/viewport.ts +272 -0
  153. package/dist/skills/llm-wiki/packages/graph-engine/src/select/.gitkeep +1 -0
  154. package/dist/skills/llm-wiki/packages/graph-engine/src/select/index.ts +189 -0
  155. package/dist/skills/llm-wiki/packages/graph-engine/src/sim/index.ts +298 -0
  156. package/dist/skills/llm-wiki/packages/graph-engine/src/sim/pins.ts +96 -0
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  160. package/dist/skills/llm-wiki/packages/graph-engine/src/types.ts +313 -0
  161. package/dist/skills/llm-wiki/packages/graph-engine/test/anim.test.ts +100 -0
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  164. package/dist/skills/llm-wiki/packages/graph-engine/test/learning.test.ts +259 -0
  165. package/dist/skills/llm-wiki/packages/graph-engine/test/preview.test.ts +56 -0
  166. package/dist/skills/llm-wiki/packages/graph-engine/test/queue.test.ts +114 -0
  167. package/dist/skills/llm-wiki/packages/graph-engine/test/render-model.test.ts +322 -0
  168. package/dist/skills/llm-wiki/packages/graph-engine/test/runtime-state.test.ts +281 -0
  169. package/dist/skills/llm-wiki/packages/graph-engine/test/search-and-legend.test.ts +111 -0
  170. package/dist/skills/llm-wiki/packages/graph-engine/test/select.test.ts +168 -0
  171. package/dist/skills/llm-wiki/packages/graph-engine/test/sim.test.ts +123 -0
  172. package/dist/skills/llm-wiki/packages/graph-engine/test/themes.test.ts +62 -0
  173. package/dist/skills/llm-wiki/packages/graph-engine/test/toolbar.test.ts +64 -0
  174. package/dist/skills/llm-wiki/packages/graph-engine/test/viewport.test.ts +167 -0
  175. package/dist/skills/llm-wiki/packages/graph-engine/tsconfig.json +17 -0
  176. package/dist/skills/llm-wiki/packages/graph-engine/vite.config.ts +15 -0
  177. package/dist/skills/llm-wiki/platforms/claude/CLAUDE.md +37 -0
  178. package/dist/skills/llm-wiki/platforms/claude/companions/llm-wiki-upgrade/SKILL.md +95 -0
  179. package/dist/skills/llm-wiki/platforms/codex/AGENTS.md +23 -0
  180. package/dist/skills/llm-wiki/scripts/adapter-state.sh +424 -0
  181. package/dist/skills/llm-wiki/scripts/build-graph-data.sh +395 -0
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  799. package/package.json +1 -1
@@ -0,0 +1,157 @@
1
+ #!/bin/bash
2
+ # Regression: stage 4.5 graph browser interactions
3
+
4
+ set -euo pipefail
5
+
6
+ REPO_ROOT="$(cd "$(dirname "$0")/.." && pwd)"
7
+ # shellcheck disable=SC1091
8
+ source "$REPO_ROOT/tests/lib/graph-html-engine-helpers.sh"
9
+
10
+ target="offline"
11
+ while [ "$#" -gt 0 ]; do
12
+ case "$1" in
13
+ --target)
14
+ target="${2:-}"
15
+ shift 2
16
+ ;;
17
+ *)
18
+ fail "Unknown argument: $1"
19
+ ;;
20
+ esac
21
+ done
22
+
23
+ if [ "$target" != "offline" ] && [ "$target" != "workbench" ]; then
24
+ fail "stage 4.5 browser regression target '$target' is not implemented yet"
25
+ fi
26
+
27
+ tmp_dir="$(mktemp -d)"
28
+ server_pid=""
29
+ web_pid=""
30
+ cleanup() {
31
+ if [ -n "$server_pid" ]; then kill "$server_pid" 2>/dev/null || true; fi
32
+ if [ -n "$web_pid" ]; then kill "$web_pid" 2>/dev/null || true; fi
33
+ rm -rf "$tmp_dir"
34
+ }
35
+ trap cleanup EXIT
36
+
37
+ npm run build -w @llm-wiki/graph-engine > /dev/null 2>&1 \
38
+ || fail "graph-engine build should succeed before stage 4.5 browser regression"
39
+ build_graph_html_fixture "$tmp_dir"
40
+ node - "$tmp_dir/wiki/graph-data.json" <<'NODE'
41
+ const fs = require("fs");
42
+ const file = process.argv[2];
43
+ const data = JSON.parse(fs.readFileSync(file, "utf8"));
44
+ for (const node of data.nodes) {
45
+ if (node.id === "A") {
46
+ node.date = "2026-01-02";
47
+ node.source_title = "不应作为实体来源链接";
48
+ }
49
+ }
50
+ data.nodes.push({
51
+ id: "S",
52
+ label: "节点来源S",
53
+ type: "source",
54
+ community: "t2",
55
+ content: "# 来源S\n\n这是来源S的内容。\n",
56
+ source_path: "/fake/wiki/sources/S.md",
57
+ date: "2026-01-03",
58
+ source_title: "原始文章S"
59
+ });
60
+ data.edges.push({ id: "e3", from: "A", to: "S", type: "EXTRACTED" });
61
+ data.meta.total_nodes = data.nodes.length;
62
+ data.meta.total_edges = data.edges.length;
63
+ data.meta.initial_view = Array.from(new Set([...(data.meta.initial_view || []), "S"]));
64
+ fs.writeFileSync(file, `${JSON.stringify(data, null, 2)}\n`);
65
+ NODE
66
+ bash "$REPO_ROOT/scripts/build-graph-html.sh" "$tmp_dir" > /dev/null 2>&1 \
67
+ || fail "build-graph-html.sh should succeed after augmenting stage 4.5 browser fixture"
68
+
69
+ dense_dir="$tmp_dir/dense/wiki"
70
+ mkdir -p "$dense_dir"
71
+ cp "$REPO_ROOT/tests/fixtures/graph-interactive-dense/wiki/graph-data.json" "$dense_dir/graph-data.json"
72
+ bash "$REPO_ROOT/scripts/build-graph-html.sh" "$tmp_dir/dense" > /dev/null 2>&1 \
73
+ || fail "build-graph-html.sh should succeed on dense stage 4.5 browser fixture"
74
+
75
+ artifact_dir="$tmp_dir/stage-4.5-artifacts"
76
+ mkdir -p "$artifact_dir"
77
+
78
+ if [ "$target" = "workbench" ]; then
79
+ if lsof -i TCP:8787 -sTCP:LISTEN >/dev/null 2>&1; then
80
+ fail "port 8787 is already in use"
81
+ fi
82
+ if lsof -i TCP:5180 -sTCP:LISTEN >/dev/null 2>&1; then
83
+ fail "port 5180 is already in use"
84
+ fi
85
+
86
+ workbench_kb="$tmp_dir/workbench-kb"
87
+ mkdir -p "$workbench_kb/wiki/entities" "$tmp_dir/home/.llm-wiki-agent"
88
+ cp "$REPO_ROOT/tests/fixtures/graph-interactive-basic/wiki/graph-data.json" "$workbench_kb/wiki/graph-data.json"
89
+ cat > "$workbench_kb/.wiki-schema.md" <<'EOF'
90
+ # Test schema
91
+ EOF
92
+ cat > "$workbench_kb/purpose.md" <<'EOF'
93
+ # Stage 4.5 Workbench Test
94
+ EOF
95
+ cat > "$workbench_kb/wiki/entities/A.md" <<'EOF'
96
+ # 节点A
97
+
98
+ 这是节点A的正文。参见 [[wiki/entities/B.md]]。
99
+ EOF
100
+ cat > "$workbench_kb/wiki/entities/B.md" <<'EOF'
101
+ # 节点B
102
+
103
+ 这是节点B的正文。
104
+ EOF
105
+ cat > "$workbench_kb/wiki/entities/C.md" <<'EOF'
106
+ # 节点C
107
+
108
+ 这是节点C的正文。
109
+ EOF
110
+ node - "$workbench_kb/wiki/graph-data.json" <<'NODE'
111
+ const fs = require("fs");
112
+ const file = process.argv[2];
113
+ const data = JSON.parse(fs.readFileSync(file, "utf8"));
114
+ for (const node of data.nodes) {
115
+ node.source_path = `wiki/entities/${node.id}.md`;
116
+ }
117
+ fs.writeFileSync(file, `${JSON.stringify(data, null, 2)}\n`);
118
+ NODE
119
+ cat > "$tmp_dir/home/.llm-wiki-agent/config.json" <<JSON
120
+ {
121
+ "version": 1,
122
+ "externalKnowledgeBases": ["$workbench_kb"]
123
+ }
124
+ JSON
125
+
126
+ HOME="$tmp_dir/home" PORT=8787 npm run dev -w @llm-wiki-agent/server > "$tmp_dir/server.log" 2>&1 &
127
+ server_pid="$!"
128
+ npm run dev -w @llm-wiki-agent/web -- --host 127.0.0.1 > "$tmp_dir/web.log" 2>&1 &
129
+ web_pid="$!"
130
+
131
+ for _ in $(seq 1 80); do
132
+ if curl -fsS "http://127.0.0.1:8787/api/knowledge-bases" >/dev/null 2>&1 \
133
+ && curl -fsS "http://127.0.0.1:5180" >/dev/null 2>&1; then
134
+ break
135
+ fi
136
+ sleep 0.25
137
+ done
138
+
139
+ curl -fsS "http://127.0.0.1:8787/api/knowledge-bases" >/dev/null 2>&1 \
140
+ || fail "workbench server did not start; see $tmp_dir/server.log"
141
+ curl -fsS "http://127.0.0.1:5180" >/dev/null 2>&1 \
142
+ || fail "workbench web did not start; see $tmp_dir/web.log"
143
+ fi
144
+
145
+ export GRAPH_STAGE_4_5_TARGET="$target"
146
+ export GRAPH_STAGE_4_5_OFFLINE_HTML="$tmp_dir/wiki/knowledge-graph.html"
147
+ export GRAPH_STAGE_4_5_DENSE_HTML="$dense_dir/knowledge-graph.html"
148
+ export GRAPH_STAGE_4_5_ARTIFACT_DIR="$artifact_dir"
149
+ export GRAPH_STAGE_4_5_WORKBENCH_URL="http://127.0.0.1:5180"
150
+
151
+ cd "$REPO_ROOT"
152
+ playwright_node_path="$(
153
+ npx --yes -p playwright -c 'node -e "const path=require(\"path\"); console.log(path.dirname(process.env.PATH.split(\":\")[0]))"'
154
+ )"
155
+ NODE_PATH="$playwright_node_path" node tests/browser/graph-stage-4-5.mjs
156
+
157
+ echo "PASS: stage 4.5 browser regression ($target)"
@@ -0,0 +1,91 @@
1
+ #!/bin/bash
2
+ # Regression: graph build should fail clearly when node/engine path is broken
3
+
4
+ set -euo pipefail
5
+
6
+ REPO_ROOT="$(cd "$(dirname "$0")/.." && pwd)"
7
+ GRAPH_DATA_SAMPLE="$REPO_ROOT/tests/fixtures/graph-data-sample-wiki"
8
+
9
+ fail() {
10
+ echo "FAIL: $1" >&2
11
+ exit 1
12
+ }
13
+
14
+ assert_text_contains() {
15
+ local text="$1"
16
+ local expected="$2"
17
+
18
+ if ! printf '%s' "$text" | grep -F -- "$expected" > /dev/null; then
19
+ fail "Expected output to contain: $expected"
20
+ fi
21
+ }
22
+
23
+ test_graph_data_exits_without_node() {
24
+ local tmp_dir fake_bin output
25
+ tmp_dir="$(mktemp -d)"
26
+ fake_bin="$tmp_dir/bin"
27
+ mkdir -p "$fake_bin"
28
+
29
+ ln -s /bin/bash "$fake_bin/bash"
30
+ ln -s "$(command -v jq)" "$fake_bin/jq"
31
+
32
+ if output="$(PATH="$fake_bin" bash "$REPO_ROOT/scripts/build-graph-data.sh" "$GRAPH_DATA_SAMPLE" 2>&1)"; then
33
+ fail "build-graph-data.sh should fail when node is unavailable"
34
+ fi
35
+
36
+ assert_text_contains "$output" "node"
37
+ assert_text_contains "$output" "Install it via"
38
+
39
+ rm -rf "$tmp_dir"
40
+ }
41
+
42
+ test_graph_data_exits_when_helper_missing() {
43
+ local tmp_dir repo_copy output
44
+ tmp_dir="$(mktemp -d)"
45
+ repo_copy="$tmp_dir/repo"
46
+
47
+ cp -R "$REPO_ROOT" "$repo_copy"
48
+ rm -rf "$repo_copy/.git"
49
+ rm "$repo_copy/scripts/graph-analysis.js"
50
+
51
+ if output="$(LLM_WIKI_TEST_MODE=1 bash "$repo_copy/scripts/build-graph-data.sh" "$repo_copy/tests/fixtures/graph-data-sample-wiki" 2>&1)"; then
52
+ fail "build-graph-data.sh should fail when helper is missing"
53
+ fi
54
+
55
+ assert_text_contains "$output" "graph-analysis.js"
56
+ assert_text_contains "$output" "图谱分析 helper"
57
+
58
+ rm -rf "$tmp_dir"
59
+ }
60
+
61
+ test_graph_html_keeps_existing_html_when_engine_asset_missing() {
62
+ local tmp_dir repo_copy output html_path
63
+ tmp_dir="$(mktemp -d)"
64
+ repo_copy="$tmp_dir/repo"
65
+
66
+ cp -R "$REPO_ROOT" "$repo_copy"
67
+ rm -rf "$repo_copy/.git"
68
+ rm "$repo_copy/packages/graph-engine/dist/engine.iife.js"
69
+
70
+ html_path="$repo_copy/tests/fixtures/graph-interactive-basic/wiki/knowledge-graph.html"
71
+ printf 'stable old html\n' > "$html_path"
72
+
73
+ if output="$(bash "$repo_copy/scripts/build-graph-html.sh" "$repo_copy/tests/fixtures/graph-interactive-basic" 2>&1)"; then
74
+ fail "build-graph-html.sh should fail when engine asset is missing"
75
+ fi
76
+
77
+ assert_text_contains "$output" "engine.iife.js"
78
+ assert_text_contains "$output" "graph-engine IIFE 产物"
79
+ assert_text_contains "$(cat "$html_path")" "stable old html"
80
+
81
+ rm -rf "$tmp_dir"
82
+ }
83
+
84
+ main() {
85
+ test_graph_data_exits_without_node
86
+ test_graph_data_exits_when_helper_missing
87
+ test_graph_html_keeps_existing_html_when_engine_asset_missing
88
+ echo "PASS: graph build failure regression coverage"
89
+ }
90
+
91
+ main "$@"
@@ -0,0 +1,309 @@
1
+ #!/bin/bash
2
+ # Regression: build-graph-data.sh should upgrade edge type from default EXTRACTED
3
+ # to explicit INFERRED / AMBIGUOUS when the same (from, to) pair is referenced
4
+ # multiple times within a single source file.
5
+ #
6
+ # Motivates fix for:
7
+ # scripts/build-graph-data.sh edge-merge awk block —
8
+ # previously the condition `saved_conf[key] == ""` was always false once the
9
+ # key had been seen (because the ternary in the same branch always filled
10
+ # it with "EXTRACTED" or the current conf), so the first occurrence locked
11
+ # the edge type forever. Any later `<!-- confidence: INFERRED -->` annotation
12
+ # on the same [[link]] in subsequent lines was silently ignored.
13
+
14
+ set -euo pipefail
15
+
16
+ REPO_ROOT="$(cd "$(dirname "$0")/.." && pwd)"
17
+ SCRIPT="$REPO_ROOT/scripts/build-graph-data.sh"
18
+
19
+ fail() {
20
+ echo "FAIL: $1" >&2
21
+ exit 1
22
+ }
23
+
24
+ test_explicit_confidence_overrides_default_on_same_page() {
25
+ local tmp_dir
26
+ tmp_dir="$(mktemp -d)"
27
+ trap 'rm -rf "$tmp_dir"' RETURN
28
+
29
+ mkdir -p "$tmp_dir/wiki/entities"
30
+
31
+ # A.md: first reference to B has no annotation (default EXTRACTED),
32
+ # later reference in the 相关页面 list carries explicit INFERRED.
33
+ # Before the fix, first occurrence locks type to EXTRACTED forever.
34
+ cat > "$tmp_dir/wiki/entities/A.md" <<'EOF'
35
+ ---
36
+ tags: [test]
37
+ ---
38
+
39
+ # A
40
+
41
+ 正文中提到 [[B]] 是一个相关的模块。
42
+
43
+ ## 相关页面
44
+
45
+ - [[B]] <!-- confidence: INFERRED --> — 推断关联
46
+ EOF
47
+
48
+ cat > "$tmp_dir/wiki/entities/B.md" <<'EOF'
49
+ ---
50
+ tags: [test]
51
+ ---
52
+
53
+ # B
54
+
55
+ ## 相关页面
56
+
57
+ - [[A]] <!-- confidence: INFERRED --> — 推断关联
58
+ EOF
59
+
60
+ # Minimal purpose.md so build-graph-data doesn't bail
61
+ cat > "$tmp_dir/purpose.md" <<'EOF'
62
+ # 研究目的
63
+ test
64
+ EOF
65
+
66
+ LLM_WIKI_TEST_MODE=1 \
67
+ bash "$SCRIPT" "$tmp_dir" "$tmp_dir/graph-data.json" > /dev/null 2>&1 \
68
+ || fail "build-graph-data.sh should succeed on fixture"
69
+
70
+ local a_to_b_type b_to_a_type
71
+ a_to_b_type=$(jq -r '.edges[] | select(.from == "A" and .to == "B") | .type' "$tmp_dir/graph-data.json")
72
+ b_to_a_type=$(jq -r '.edges[] | select(.from == "B" and .to == "A") | .type' "$tmp_dir/graph-data.json")
73
+
74
+ [ "$a_to_b_type" = "INFERRED" ] \
75
+ || fail "A→B should be INFERRED after merging (default + explicit INFERRED on same page), got: $a_to_b_type"
76
+
77
+ [ "$b_to_a_type" = "INFERRED" ] \
78
+ || fail "B→A should be INFERRED (only one reference, explicitly annotated), got: $b_to_a_type"
79
+ }
80
+
81
+ test_ambiguous_overrides_default_when_mixed() {
82
+ local tmp_dir
83
+ tmp_dir="$(mktemp -d)"
84
+ trap 'rm -rf "$tmp_dir"' RETURN
85
+
86
+ mkdir -p "$tmp_dir/wiki/entities"
87
+
88
+ # X.md references Y multiple times: plain body + AMBIGUOUS annotation
89
+ cat > "$tmp_dir/wiki/entities/X.md" <<'EOF'
90
+ ---
91
+ tags: [test]
92
+ ---
93
+
94
+ # X
95
+
96
+ See [[Y]] in context.
97
+ Also mention [[Y]] again.
98
+
99
+ ## 相关页面
100
+
101
+ - [[Y]] <!-- confidence: AMBIGUOUS --> — 待确认
102
+ EOF
103
+
104
+ cat > "$tmp_dir/wiki/entities/Y.md" <<'EOF'
105
+ ---
106
+ tags: [test]
107
+ ---
108
+
109
+ # Y
110
+
111
+ ## 相关页面
112
+
113
+ - [[X]]
114
+ EOF
115
+
116
+ cat > "$tmp_dir/purpose.md" <<'EOF'
117
+ # 研究目的
118
+ test
119
+ EOF
120
+
121
+ LLM_WIKI_TEST_MODE=1 \
122
+ bash "$SCRIPT" "$tmp_dir" "$tmp_dir/graph-data.json" > /dev/null 2>&1 \
123
+ || fail "build-graph-data.sh should succeed on fixture"
124
+
125
+ local x_to_y_type
126
+ x_to_y_type=$(jq -r '.edges[] | select(.from == "X" and .to == "Y") | .type' "$tmp_dir/graph-data.json")
127
+
128
+ [ "$x_to_y_type" = "AMBIGUOUS" ] \
129
+ || fail "X→Y should be AMBIGUOUS (default + default + AMBIGUOUS merge), got: $x_to_y_type"
130
+ }
131
+
132
+ test_default_extracted_when_no_annotation() {
133
+ local tmp_dir
134
+ tmp_dir="$(mktemp -d)"
135
+ trap 'rm -rf "$tmp_dir"' RETURN
136
+
137
+ mkdir -p "$tmp_dir/wiki/entities"
138
+
139
+ cat > "$tmp_dir/wiki/entities/P.md" <<'EOF'
140
+ ---
141
+ tags: [test]
142
+ ---
143
+
144
+ # P
145
+
146
+ See [[Q]].
147
+
148
+ ## 相关页面
149
+
150
+ - [[Q]]
151
+ EOF
152
+
153
+ cat > "$tmp_dir/wiki/entities/Q.md" <<'EOF'
154
+ ---
155
+ tags: [test]
156
+ ---
157
+
158
+ # Q
159
+
160
+ ## 相关页面
161
+
162
+ - [[P]]
163
+ EOF
164
+
165
+ cat > "$tmp_dir/purpose.md" <<'EOF'
166
+ # 研究目的
167
+ test
168
+ EOF
169
+
170
+ LLM_WIKI_TEST_MODE=1 \
171
+ bash "$SCRIPT" "$tmp_dir" "$tmp_dir/graph-data.json" > /dev/null 2>&1 \
172
+ || fail "build-graph-data.sh should succeed on fixture"
173
+
174
+ local p_to_q_type
175
+ p_to_q_type=$(jq -r '.edges[] | select(.from == "P" and .to == "Q") | .type' "$tmp_dir/graph-data.json")
176
+
177
+ [ "$p_to_q_type" = "EXTRACTED" ] \
178
+ || fail "P→Q should default to EXTRACTED when no annotation exists, got: $p_to_q_type"
179
+ }
180
+
181
+ test_first_explicit_wins_among_multiple_explicit() {
182
+ # When two different explicit confidence values appear for the same
183
+ # (from, to) pair within the same page, the first-seen one should win
184
+ # (stable + deterministic). This keeps semantics aligned with the
185
+ # existing "first occurrence" comment in the awk block.
186
+ local tmp_dir
187
+ tmp_dir="$(mktemp -d)"
188
+ trap 'rm -rf "$tmp_dir"' RETURN
189
+
190
+ mkdir -p "$tmp_dir/wiki/entities"
191
+
192
+ cat > "$tmp_dir/wiki/entities/M.md" <<'EOF'
193
+ ---
194
+ tags: [test]
195
+ ---
196
+
197
+ # M
198
+
199
+ See [[N]] <!-- confidence: INFERRED --> in the body.
200
+
201
+ ## 相关页面
202
+
203
+ - [[N]] <!-- confidence: AMBIGUOUS --> — should NOT override INFERRED
204
+ EOF
205
+
206
+ cat > "$tmp_dir/wiki/entities/N.md" <<'EOF'
207
+ ---
208
+ tags: [test]
209
+ ---
210
+
211
+ # N
212
+
213
+ ## 相关页面
214
+
215
+ - [[M]]
216
+ EOF
217
+
218
+ cat > "$tmp_dir/purpose.md" <<'EOF'
219
+ # 研究目的
220
+ test
221
+ EOF
222
+
223
+ LLM_WIKI_TEST_MODE=1 \
224
+ bash "$SCRIPT" "$tmp_dir" "$tmp_dir/graph-data.json" > /dev/null 2>&1 \
225
+ || fail "build-graph-data.sh should succeed on fixture"
226
+
227
+ local m_to_n_type
228
+ m_to_n_type=$(jq -r '.edges[] | select(.from == "M" and .to == "N") | .type' "$tmp_dir/graph-data.json")
229
+
230
+ [ "$m_to_n_type" = "INFERRED" ] \
231
+ || fail "M→N should keep first explicit INFERRED, got: $m_to_n_type"
232
+ }
233
+
234
+ test_edge_contract_separates_relation_type_and_confidence() {
235
+ local tmp_dir
236
+ tmp_dir="$(mktemp -d)"
237
+ trap 'rm -rf "$tmp_dir"' RETURN
238
+
239
+ mkdir -p "$tmp_dir/wiki/entities"
240
+
241
+ cat > "$tmp_dir/wiki/entities/A.md" <<'EOF'
242
+ ---
243
+ tags: [test]
244
+ ---
245
+
246
+ # A
247
+
248
+ See [[B]] without labels first.
249
+
250
+ ## 相关页面
251
+
252
+ - [[B]] <!-- relation: 实现 --> <!-- confidence: INFERRED --> — explicit contract
253
+ - [[C]] — default contract
254
+ EOF
255
+
256
+ cat > "$tmp_dir/wiki/entities/B.md" <<'EOF'
257
+ ---
258
+ tags: [test]
259
+ ---
260
+
261
+ # B
262
+ EOF
263
+
264
+ cat > "$tmp_dir/wiki/entities/C.md" <<'EOF'
265
+ ---
266
+ tags: [test]
267
+ ---
268
+
269
+ # C
270
+ EOF
271
+
272
+ cat > "$tmp_dir/purpose.md" <<'EOF'
273
+ # 研究目的
274
+ test
275
+ EOF
276
+
277
+ LLM_WIKI_TEST_MODE=1 \
278
+ bash "$SCRIPT" "$tmp_dir" "$tmp_dir/graph-data.json" > /dev/null 2>&1 \
279
+ || fail "build-graph-data.sh should succeed on relation contract fixture"
280
+
281
+ local a_to_b_type a_to_b_confidence a_to_b_relation
282
+ a_to_b_type=$(jq -r '.edges[] | select(.from == "A" and .to == "B") | .type' "$tmp_dir/graph-data.json")
283
+ a_to_b_confidence=$(jq -r '.edges[] | select(.from == "A" and .to == "B") | .confidence' "$tmp_dir/graph-data.json")
284
+ a_to_b_relation=$(jq -r '.edges[] | select(.from == "A" and .to == "B") | .relation_type' "$tmp_dir/graph-data.json")
285
+
286
+ [ "$a_to_b_type" = "INFERRED" ] \
287
+ || fail "A→B legacy type should remain INFERRED for compatibility, got: $a_to_b_type"
288
+ [ "$a_to_b_confidence" = "INFERRED" ] \
289
+ || fail "A→B confidence should be INFERRED, got: $a_to_b_confidence"
290
+ [ "$a_to_b_relation" = "实现" ] \
291
+ || fail "A→B relation_type should be 实现, got: $a_to_b_relation"
292
+
293
+ local a_to_c_confidence a_to_c_relation
294
+ a_to_c_confidence=$(jq -r '.edges[] | select(.from == "A" and .to == "C") | .confidence' "$tmp_dir/graph-data.json")
295
+ a_to_c_relation=$(jq -r '.edges[] | select(.from == "A" and .to == "C") | .relation_type' "$tmp_dir/graph-data.json")
296
+
297
+ [ "$a_to_c_confidence" = "EXTRACTED" ] \
298
+ || fail "A→C confidence should default to EXTRACTED, got: $a_to_c_confidence"
299
+ [ "$a_to_c_relation" = "依赖" ] \
300
+ || fail "A→C relation_type should default to 依赖, got: $a_to_c_relation"
301
+ }
302
+
303
+ test_explicit_confidence_overrides_default_on_same_page
304
+ test_ambiguous_overrides_default_when_mixed
305
+ test_default_extracted_when_no_annotation
306
+ test_first_explicit_wins_among_multiple_explicit
307
+ test_edge_contract_separates_relation_type_and_confidence
308
+
309
+ echo "PASS: graph-data-confidence-merge.regression-1"
@@ -0,0 +1,49 @@
1
+ #!/bin/bash
2
+ # Regression: graph-data nodes must keep wiki-relative page paths for workbench reader and selection prompts.
3
+
4
+ set -euo pipefail
5
+
6
+ REPO_ROOT="$(cd "$(dirname "$0")/.." && pwd)"
7
+ SCRIPT="$REPO_ROOT/scripts/build-graph-data.sh"
8
+
9
+ fail() {
10
+ echo "FAIL: $1" >&2
11
+ exit 1
12
+ }
13
+
14
+ test_synthesis_session_node_keeps_wiki_relative_path() {
15
+ local tmp_dir source_path private_path
16
+ tmp_dir="$(mktemp -d)"
17
+
18
+ mkdir -p "$tmp_dir/wiki/synthesis/sessions"
19
+
20
+ cat > "$tmp_dir/purpose.md" <<'EOF'
21
+ # Source Path Fixture
22
+ EOF
23
+
24
+ cat > "$tmp_dir/wiki/synthesis/sessions/A.md" <<'EOF'
25
+ # A
26
+
27
+ 消化结果正文。
28
+ EOF
29
+
30
+ LLM_WIKI_TEST_MODE=1 \
31
+ bash "$SCRIPT" "$tmp_dir" "$tmp_dir/wiki/graph-data.json" > /dev/null 2>&1 \
32
+ || fail "build-graph-data.sh should succeed on synthesis session fixture"
33
+
34
+ source_path="$(jq -r '.nodes[] | select(.id == "A") | .source_path // ""' "$tmp_dir/wiki/graph-data.json")"
35
+ [ "$source_path" = "wiki/synthesis/sessions/A.md" ] \
36
+ || fail "Expected source_path to be wiki/synthesis/sessions/A.md, got: $source_path"
37
+
38
+ private_path="$(jq -r '.nodes[] | select(.id == "A") | ._file_path // ""' "$tmp_dir/wiki/graph-data.json")"
39
+ [ -z "$private_path" ] || fail "Graph data should not expose helper-only _file_path, got: $private_path"
40
+
41
+ rm -rf "$tmp_dir"
42
+ }
43
+
44
+ main() {
45
+ test_synthesis_session_node_keeps_wiki_relative_path
46
+ echo "PASS: graph data source path regression coverage"
47
+ }
48
+
49
+ main "$@"
@@ -0,0 +1,47 @@
1
+ #!/bin/bash
2
+ # Regression: engine graph HTML should keep accessible node and reader hooks
3
+
4
+ set -euo pipefail
5
+
6
+ REPO_ROOT="$(cd "$(dirname "$0")/.." && pwd)"
7
+ source "$REPO_ROOT/tests/lib/graph-html-engine-helpers.sh"
8
+
9
+ test_graph_html_has_reduced_motion_and_accessible_markup() {
10
+ local tmp_dir html
11
+ tmp_dir="$(mktemp -d)"
12
+
13
+ build_graph_html_fixture "$tmp_dir"
14
+ html="$tmp_dir/wiki/knowledge-graph.html"
15
+
16
+ assert_file_contains "$html" "prefers-reduced-motion"
17
+ assert_file_contains "$html" "aria-label=\"图谱统计\""
18
+ assert_file_contains "$html" 'setAttribute(`aria-hidden`,`true`)'
19
+ assert_file_contains "$html" 'setAttribute(`aria-pressed`,e.selected?`true`:`false`)'
20
+ assert_file_contains "$html" 'setAttribute(`aria-label`,`关闭阅读面板`)'
21
+
22
+ rm -rf "$tmp_dir"
23
+ }
24
+
25
+ test_graph_html_has_keyboard_safe_reader_close() {
26
+ local tmp_dir html
27
+ tmp_dir="$(mktemp -d)"
28
+
29
+ build_graph_html_fixture "$tmp_dir"
30
+ html="$tmp_dir/wiki/knowledge-graph.html"
31
+
32
+ grep -Eq '[[:alnum:]_$]+\.type=`button`' "$html" \
33
+ || fail "Expected $html to set generated graph buttons to type=button"
34
+ assert_file_contains "$html" "graph-reader-close"
35
+ assert_file_contains "$html" "关闭阅读面板"
36
+ assert_file_contains "$REPO_ROOT/packages/graph-engine/src/render/static-renderer.ts" 'close.addEventListener("click", () => clearInteractionState());'
37
+
38
+ rm -rf "$tmp_dir"
39
+ }
40
+
41
+ main() {
42
+ test_graph_html_has_reduced_motion_and_accessible_markup
43
+ test_graph_html_has_keyboard_safe_reader_close
44
+ echo "PASS: graph HTML a11y regression coverage"
45
+ }
46
+
47
+ main "$@"