@researai/deepscientist 1.5.6 → 1.5.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (158) hide show
  1. package/README.md +32 -0
  2. package/bin/ds.js +274 -18
  3. package/docs/en/07_MEMORY_AND_MCP.md +40 -3
  4. package/docs/en/99_ACKNOWLEDGEMENTS.md +1 -0
  5. package/docs/zh/07_MEMORY_AND_MCP.md +40 -3
  6. package/docs/zh/99_ACKNOWLEDGEMENTS.md +1 -0
  7. package/install.sh +34 -0
  8. package/package.json +1 -1
  9. package/pyproject.toml +1 -1
  10. package/src/deepscientist/__init__.py +1 -1
  11. package/src/deepscientist/acp/envelope.py +1 -0
  12. package/src/deepscientist/artifact/metrics.py +813 -80
  13. package/src/deepscientist/artifact/schemas.py +1 -0
  14. package/src/deepscientist/artifact/service.py +1101 -99
  15. package/src/deepscientist/bash_exec/monitor.py +1 -1
  16. package/src/deepscientist/bash_exec/service.py +17 -9
  17. package/src/deepscientist/channels/qq.py +17 -0
  18. package/src/deepscientist/channels/relay.py +16 -0
  19. package/src/deepscientist/cli.py +1 -1
  20. package/src/deepscientist/config/models.py +12 -6
  21. package/src/deepscientist/config/service.py +75 -2
  22. package/src/deepscientist/connector_profiles.py +34 -6
  23. package/src/deepscientist/daemon/api/handlers.py +290 -15
  24. package/src/deepscientist/daemon/api/router.py +2 -0
  25. package/src/deepscientist/daemon/app.py +521 -23
  26. package/src/deepscientist/gitops/diff.py +6 -10
  27. package/src/deepscientist/mcp/server.py +188 -39
  28. package/src/deepscientist/prompts/builder.py +71 -22
  29. package/src/deepscientist/qq_profiles.py +19 -9
  30. package/src/deepscientist/quest/layout.py +1 -0
  31. package/src/deepscientist/quest/service.py +83 -34
  32. package/src/deepscientist/quest/stage_views.py +74 -29
  33. package/src/deepscientist/runners/codex.py +32 -14
  34. package/src/deepscientist/runners/runtime_overrides.py +46 -0
  35. package/src/deepscientist/skills/installer.py +7 -0
  36. package/src/prompts/connectors/qq.md +1 -1
  37. package/src/prompts/contracts/shared_interaction.md +14 -0
  38. package/src/prompts/system.md +134 -30
  39. package/src/skills/analysis-campaign/SKILL.md +34 -8
  40. package/src/skills/analysis-campaign/references/campaign-checklist-template.md +41 -0
  41. package/src/skills/analysis-campaign/references/campaign-plan-template.md +68 -0
  42. package/src/skills/baseline/SKILL.md +145 -32
  43. package/src/skills/baseline/references/baseline-checklist-template.md +57 -0
  44. package/src/skills/baseline/references/baseline-plan-template.md +105 -0
  45. package/src/skills/decision/SKILL.md +12 -8
  46. package/src/skills/experiment/SKILL.md +51 -9
  47. package/src/skills/experiment/references/main-experiment-checklist-template.md +52 -0
  48. package/src/skills/experiment/references/main-experiment-plan-template.md +79 -0
  49. package/src/skills/figure-polish/SKILL.md +1 -0
  50. package/src/skills/finalize/SKILL.md +3 -8
  51. package/src/skills/idea/SKILL.md +2 -8
  52. package/src/skills/intake-audit/SKILL.md +2 -8
  53. package/src/skills/rebuttal/SKILL.md +2 -8
  54. package/src/skills/review/SKILL.md +2 -8
  55. package/src/skills/scout/SKILL.md +2 -8
  56. package/src/skills/write/SKILL.md +52 -16
  57. package/src/skills/write/templates/DEEPSCIENTIST_NOTES.md +21 -0
  58. package/src/skills/write/templates/README.md +408 -0
  59. package/src/skills/write/templates/UPSTREAM_LICENSE.txt +21 -0
  60. package/src/skills/write/templates/aaai2026/README.md +534 -0
  61. package/src/skills/write/templates/aaai2026/aaai2026-unified-supp.tex +144 -0
  62. package/src/skills/write/templates/aaai2026/aaai2026-unified-template.tex +952 -0
  63. package/src/skills/write/templates/aaai2026/aaai2026.bib +111 -0
  64. package/src/skills/write/templates/aaai2026/aaai2026.bst +1493 -0
  65. package/src/skills/write/templates/aaai2026/aaai2026.sty +315 -0
  66. package/src/skills/write/templates/acl/README.md +50 -0
  67. package/src/skills/write/templates/acl/acl.sty +312 -0
  68. package/src/skills/write/templates/acl/acl_latex.tex +377 -0
  69. package/src/skills/write/templates/acl/acl_lualatex.tex +101 -0
  70. package/src/skills/write/templates/acl/acl_natbib.bst +1940 -0
  71. package/src/skills/write/templates/acl/anthology.bib.txt +26 -0
  72. package/src/skills/write/templates/acl/custom.bib +70 -0
  73. package/src/skills/write/templates/acl/formatting.md +326 -0
  74. package/src/skills/write/templates/asplos2027/main.tex +459 -0
  75. package/src/skills/write/templates/asplos2027/references.bib +135 -0
  76. package/src/skills/write/templates/colm2025/README.md +3 -0
  77. package/src/skills/write/templates/colm2025/colm2025_conference.bib +11 -0
  78. package/src/skills/write/templates/colm2025/colm2025_conference.bst +1440 -0
  79. package/src/skills/write/templates/colm2025/colm2025_conference.sty +218 -0
  80. package/src/skills/write/templates/colm2025/colm2025_conference.tex +305 -0
  81. package/src/skills/write/templates/colm2025/fancyhdr.sty +485 -0
  82. package/src/skills/write/templates/colm2025/math_commands.tex +508 -0
  83. package/src/skills/write/templates/colm2025/natbib.sty +1246 -0
  84. package/src/skills/write/templates/iclr2026/fancyhdr.sty +485 -0
  85. package/src/skills/write/templates/iclr2026/iclr2026_conference.bib +24 -0
  86. package/src/skills/write/templates/iclr2026/iclr2026_conference.bst +1440 -0
  87. package/src/skills/write/templates/iclr2026/iclr2026_conference.sty +246 -0
  88. package/src/skills/write/templates/iclr2026/iclr2026_conference.tex +414 -0
  89. package/src/skills/write/templates/iclr2026/math_commands.tex +508 -0
  90. package/src/skills/write/templates/iclr2026/natbib.sty +1246 -0
  91. package/src/skills/write/templates/icml2026/algorithm.sty +79 -0
  92. package/src/skills/write/templates/icml2026/algorithmic.sty +201 -0
  93. package/src/skills/write/templates/icml2026/example_paper.bib +75 -0
  94. package/src/skills/write/templates/icml2026/example_paper.tex +662 -0
  95. package/src/skills/write/templates/icml2026/fancyhdr.sty +864 -0
  96. package/src/skills/write/templates/icml2026/icml2026.bst +1443 -0
  97. package/src/skills/write/templates/icml2026/icml2026.sty +767 -0
  98. package/src/skills/write/templates/neurips2025/Makefile +36 -0
  99. package/src/skills/write/templates/neurips2025/extra_pkgs.tex +53 -0
  100. package/src/skills/write/templates/neurips2025/main.tex +38 -0
  101. package/src/skills/write/templates/neurips2025/neurips.sty +382 -0
  102. package/src/skills/write/templates/nsdi2027/main.tex +426 -0
  103. package/src/skills/write/templates/nsdi2027/references.bib +151 -0
  104. package/src/skills/write/templates/nsdi2027/usenix-2020-09.sty +83 -0
  105. package/src/skills/write/templates/osdi2026/main.tex +429 -0
  106. package/src/skills/write/templates/osdi2026/references.bib +150 -0
  107. package/src/skills/write/templates/osdi2026/usenix-2020-09.sty +83 -0
  108. package/src/skills/write/templates/sosp2026/main.tex +532 -0
  109. package/src/skills/write/templates/sosp2026/references.bib +148 -0
  110. package/src/tui/package.json +1 -1
  111. package/src/ui/dist/assets/{AiManusChatView-BGLArZRn.js → AiManusChatView-m2FNtwbn.js} +110 -14
  112. package/src/ui/dist/assets/{AnalysisPlugin-BgDGSigG.js → AnalysisPlugin-BMTF8EGL.js} +1 -1
  113. package/src/ui/dist/assets/{AutoFigurePlugin-B65HD7L4.js → AutoFigurePlugin-DxPdMUNb.js} +5 -5
  114. package/src/ui/dist/assets/{CliPlugin-CUqgsFHC.js → CliPlugin-BEOWgxCI.js} +9 -9
  115. package/src/ui/dist/assets/{CodeEditorPlugin-CF5EdvaS.js → CodeEditorPlugin-BCXvjqmb.js} +8 -8
  116. package/src/ui/dist/assets/{CodeViewerPlugin-DEeU063D.js → CodeViewerPlugin-DaJcy3nD.js} +5 -5
  117. package/src/ui/dist/assets/{DocViewerPlugin-Df-FuDlZ.js → DocViewerPlugin-ByfeIq4K.js} +3 -3
  118. package/src/ui/dist/assets/{GitDiffViewerPlugin-RAnNaRxM.js → GitDiffViewerPlugin-Cksf3VZ-.js} +830 -86
  119. package/src/ui/dist/assets/{ImageViewerPlugin-DXJ0ZJGg.js → ImageViewerPlugin-CFz-OsTS.js} +5 -5
  120. package/src/ui/dist/assets/{LabCopilotPanel-BlO-sKsj.js → LabCopilotPanel-CJ1cJzoX.js} +10 -10
  121. package/src/ui/dist/assets/{LabPlugin-BajPZW5v.js → LabPlugin-BF3dVJwa.js} +1 -1
  122. package/src/ui/dist/assets/{LatexPlugin-F1OEol8D.js → LatexPlugin-DDkwZ6Sj.js} +7 -7
  123. package/src/ui/dist/assets/{MarkdownViewerPlugin-MhUupqwT.js → MarkdownViewerPlugin-HAuvurcT.js} +4 -4
  124. package/src/ui/dist/assets/{MarketplacePlugin-DxhIEsv0.js → MarketplacePlugin-BtoTYy2C.js} +3 -3
  125. package/src/ui/dist/assets/{index-B-2scqCJ.js → NotebookEditor-CSJYx7b-.js} +12 -155
  126. package/src/ui/dist/assets/{NotebookEditor-q7TkhewC.js → NotebookEditor-DQgRezm_.js} +1 -1
  127. package/src/ui/dist/assets/{PdfLoader-B8ZOTKFc.js → PdfLoader-DPa_-fv6.js} +1 -1
  128. package/src/ui/dist/assets/{PdfMarkdownPlugin-xFPvzvWh.js → PdfMarkdownPlugin-BZpXOEjm.js} +3 -3
  129. package/src/ui/dist/assets/{PdfViewerPlugin-EjEcsIB8.js → PdfViewerPlugin-BT8a6wGR.js} +10 -10
  130. package/src/ui/dist/assets/{SearchPlugin-ixY-1lgW.js → SearchPlugin-D_blveZi.js} +1 -1
  131. package/src/ui/dist/assets/{Stepper-gYFK2Pgz.js → Stepper-DH2k75Vo.js} +1 -1
  132. package/src/ui/dist/assets/{TextViewerPlugin-Cym6pv_n.js → TextViewerPlugin-Btx0M3hX.js} +4 -4
  133. package/src/ui/dist/assets/{VNCViewer-BPmIHcmK.js → VNCViewer-DImJO4rO.js} +9 -9
  134. package/src/ui/dist/assets/{bibtex-Btv6Wi7f.js → bibtex-B-Hqu0Sg.js} +1 -1
  135. package/src/ui/dist/assets/{code-BlG7g85c.js → code-BUfXGJSl.js} +1 -1
  136. package/src/ui/dist/assets/{file-content-DBT5OfTZ.js → file-content-VqamwI3X.js} +1 -1
  137. package/src/ui/dist/assets/{file-diff-panel-BWXYzqHk.js → file-diff-panel-C_wOoS7a.js} +1 -1
  138. package/src/ui/dist/assets/{file-socket-wDlx6byM.js → file-socket-D2bTuMVP.js} +1 -1
  139. package/src/ui/dist/assets/{file-utils-Ba3nJmH0.js → file-utils--zJCPN1i.js} +1 -1
  140. package/src/ui/dist/assets/{image-BwtCyguk.js → image-BZkGJ4mM.js} +1 -1
  141. package/src/ui/dist/assets/{index-CfRpE209.js → index-CxkvSeKw.js} +2 -2
  142. package/src/ui/dist/assets/{index-DcqvKzeJ.js → index-D9QIGcmc.js} +1 -1
  143. package/src/ui/dist/assets/{index-DpMZw8aM.css → index-DXZ1daiJ.css} +163 -34
  144. package/src/ui/dist/assets/index-DdRW6RMJ.js +159 -0
  145. package/src/ui/dist/assets/{index-Bz5AaWL7.js → index-DjggJovS.js} +2948 -1565
  146. package/src/ui/dist/assets/{message-square-BnlyWVH0.js → message-square-FUIPIhU2.js} +1 -1
  147. package/src/ui/dist/assets/{monaco-CXe0pAVe.js → monaco-DHMc7kKM.js} +1 -1
  148. package/src/ui/dist/assets/{popover-BCHmVhHj.js → popover-B85oCgCS.js} +1 -1
  149. package/src/ui/dist/assets/{project-sync-Brk6kaOD.js → project-sync-DOMCcPac.js} +1 -1
  150. package/src/ui/dist/assets/{sigma-D72eSUep.js → sigma-BO2rQrl3.js} +1 -1
  151. package/src/ui/dist/assets/{tooltip-BMWd0dqX.js → tooltip-B1OspAkx.js} +1 -1
  152. package/src/ui/dist/assets/{trash-BIt_eWIS.js → trash-BsVEH_dV.js} +1 -1
  153. package/src/ui/dist/assets/{useCliAccess-N1hkTRrR.js → useCliAccess-b8L6JuZm.js} +1 -1
  154. package/src/ui/dist/assets/{useFileDiffOverlay-DPRPv6rv.js → useFileDiffOverlay-BY7uA9hV.js} +1 -1
  155. package/src/ui/dist/assets/{wrap-text-E5-UheyP.js → wrap-text-BwyVuUIK.js} +1 -1
  156. package/src/ui/dist/assets/{zoom-out-D4TR-ZZ_.js → zoom-out-RDpLugQP.js} +1 -1
  157. package/src/ui/dist/index.html +5 -2
  158. /package/src/ui/dist/assets/{index-CccQYZjX.css → NotebookEditor-CccQYZjX.css} +0 -0
@@ -0,0 +1,508 @@
1
+ %%%%% NEW MATH DEFINITIONS %%%%%
2
+
3
+ \usepackage{amsmath,amsfonts,bm}
4
+
5
+ % Mark sections of captions for referring to divisions of figures
6
+ \newcommand{\figleft}{{\em (Left)}}
7
+ \newcommand{\figcenter}{{\em (Center)}}
8
+ \newcommand{\figright}{{\em (Right)}}
9
+ \newcommand{\figtop}{{\em (Top)}}
10
+ \newcommand{\figbottom}{{\em (Bottom)}}
11
+ \newcommand{\captiona}{{\em (a)}}
12
+ \newcommand{\captionb}{{\em (b)}}
13
+ \newcommand{\captionc}{{\em (c)}}
14
+ \newcommand{\captiond}{{\em (d)}}
15
+
16
+ % Highlight a newly defined term
17
+ \newcommand{\newterm}[1]{{\bf #1}}
18
+
19
+
20
+ % Figure reference, lower-case.
21
+ \def\figref#1{figure~\ref{#1}}
22
+ % Figure reference, capital. For start of sentence
23
+ \def\Figref#1{Figure~\ref{#1}}
24
+ \def\twofigref#1#2{figures \ref{#1} and \ref{#2}}
25
+ \def\quadfigref#1#2#3#4{figures \ref{#1}, \ref{#2}, \ref{#3} and \ref{#4}}
26
+ % Section reference, lower-case.
27
+ \def\secref#1{section~\ref{#1}}
28
+ % Section reference, capital.
29
+ \def\Secref#1{Section~\ref{#1}}
30
+ % Reference to two sections.
31
+ \def\twosecrefs#1#2{sections \ref{#1} and \ref{#2}}
32
+ % Reference to three sections.
33
+ \def\secrefs#1#2#3{sections \ref{#1}, \ref{#2} and \ref{#3}}
34
+ % Reference to an equation, lower-case.
35
+ \def\eqref#1{equation~\ref{#1}}
36
+ % Reference to an equation, upper case
37
+ \def\Eqref#1{Equation~\ref{#1}}
38
+ % A raw reference to an equation---avoid using if possible
39
+ \def\plaineqref#1{\ref{#1}}
40
+ % Reference to a chapter, lower-case.
41
+ \def\chapref#1{chapter~\ref{#1}}
42
+ % Reference to an equation, upper case.
43
+ \def\Chapref#1{Chapter~\ref{#1}}
44
+ % Reference to a range of chapters
45
+ \def\rangechapref#1#2{chapters\ref{#1}--\ref{#2}}
46
+ % Reference to an algorithm, lower-case.
47
+ \def\algref#1{algorithm~\ref{#1}}
48
+ % Reference to an algorithm, upper case.
49
+ \def\Algref#1{Algorithm~\ref{#1}}
50
+ \def\twoalgref#1#2{algorithms \ref{#1} and \ref{#2}}
51
+ \def\Twoalgref#1#2{Algorithms \ref{#1} and \ref{#2}}
52
+ % Reference to a part, lower case
53
+ \def\partref#1{part~\ref{#1}}
54
+ % Reference to a part, upper case
55
+ \def\Partref#1{Part~\ref{#1}}
56
+ \def\twopartref#1#2{parts \ref{#1} and \ref{#2}}
57
+
58
+ \def\ceil#1{\lceil #1 \rceil}
59
+ \def\floor#1{\lfloor #1 \rfloor}
60
+ \def\1{\bm{1}}
61
+ \newcommand{\train}{\mathcal{D}}
62
+ \newcommand{\valid}{\mathcal{D_{\mathrm{valid}}}}
63
+ \newcommand{\test}{\mathcal{D_{\mathrm{test}}}}
64
+
65
+ \def\eps{{\epsilon}}
66
+
67
+
68
+ % Random variables
69
+ \def\reta{{\textnormal{$\eta$}}}
70
+ \def\ra{{\textnormal{a}}}
71
+ \def\rb{{\textnormal{b}}}
72
+ \def\rc{{\textnormal{c}}}
73
+ \def\rd{{\textnormal{d}}}
74
+ \def\re{{\textnormal{e}}}
75
+ \def\rf{{\textnormal{f}}}
76
+ \def\rg{{\textnormal{g}}}
77
+ \def\rh{{\textnormal{h}}}
78
+ \def\ri{{\textnormal{i}}}
79
+ \def\rj{{\textnormal{j}}}
80
+ \def\rk{{\textnormal{k}}}
81
+ \def\rl{{\textnormal{l}}}
82
+ % rm is already a command, just don't name any random variables m
83
+ \def\rn{{\textnormal{n}}}
84
+ \def\ro{{\textnormal{o}}}
85
+ \def\rp{{\textnormal{p}}}
86
+ \def\rq{{\textnormal{q}}}
87
+ \def\rr{{\textnormal{r}}}
88
+ \def\rs{{\textnormal{s}}}
89
+ \def\rt{{\textnormal{t}}}
90
+ \def\ru{{\textnormal{u}}}
91
+ \def\rv{{\textnormal{v}}}
92
+ \def\rw{{\textnormal{w}}}
93
+ \def\rx{{\textnormal{x}}}
94
+ \def\ry{{\textnormal{y}}}
95
+ \def\rz{{\textnormal{z}}}
96
+
97
+ % Random vectors
98
+ \def\rvepsilon{{\mathbf{\epsilon}}}
99
+ \def\rvtheta{{\mathbf{\theta}}}
100
+ \def\rva{{\mathbf{a}}}
101
+ \def\rvb{{\mathbf{b}}}
102
+ \def\rvc{{\mathbf{c}}}
103
+ \def\rvd{{\mathbf{d}}}
104
+ \def\rve{{\mathbf{e}}}
105
+ \def\rvf{{\mathbf{f}}}
106
+ \def\rvg{{\mathbf{g}}}
107
+ \def\rvh{{\mathbf{h}}}
108
+ \def\rvu{{\mathbf{i}}}
109
+ \def\rvj{{\mathbf{j}}}
110
+ \def\rvk{{\mathbf{k}}}
111
+ \def\rvl{{\mathbf{l}}}
112
+ \def\rvm{{\mathbf{m}}}
113
+ \def\rvn{{\mathbf{n}}}
114
+ \def\rvo{{\mathbf{o}}}
115
+ \def\rvp{{\mathbf{p}}}
116
+ \def\rvq{{\mathbf{q}}}
117
+ \def\rvr{{\mathbf{r}}}
118
+ \def\rvs{{\mathbf{s}}}
119
+ \def\rvt{{\mathbf{t}}}
120
+ \def\rvu{{\mathbf{u}}}
121
+ \def\rvv{{\mathbf{v}}}
122
+ \def\rvw{{\mathbf{w}}}
123
+ \def\rvx{{\mathbf{x}}}
124
+ \def\rvy{{\mathbf{y}}}
125
+ \def\rvz{{\mathbf{z}}}
126
+
127
+ % Elements of random vectors
128
+ \def\erva{{\textnormal{a}}}
129
+ \def\ervb{{\textnormal{b}}}
130
+ \def\ervc{{\textnormal{c}}}
131
+ \def\ervd{{\textnormal{d}}}
132
+ \def\erve{{\textnormal{e}}}
133
+ \def\ervf{{\textnormal{f}}}
134
+ \def\ervg{{\textnormal{g}}}
135
+ \def\ervh{{\textnormal{h}}}
136
+ \def\ervi{{\textnormal{i}}}
137
+ \def\ervj{{\textnormal{j}}}
138
+ \def\ervk{{\textnormal{k}}}
139
+ \def\ervl{{\textnormal{l}}}
140
+ \def\ervm{{\textnormal{m}}}
141
+ \def\ervn{{\textnormal{n}}}
142
+ \def\ervo{{\textnormal{o}}}
143
+ \def\ervp{{\textnormal{p}}}
144
+ \def\ervq{{\textnormal{q}}}
145
+ \def\ervr{{\textnormal{r}}}
146
+ \def\ervs{{\textnormal{s}}}
147
+ \def\ervt{{\textnormal{t}}}
148
+ \def\ervu{{\textnormal{u}}}
149
+ \def\ervv{{\textnormal{v}}}
150
+ \def\ervw{{\textnormal{w}}}
151
+ \def\ervx{{\textnormal{x}}}
152
+ \def\ervy{{\textnormal{y}}}
153
+ \def\ervz{{\textnormal{z}}}
154
+
155
+ % Random matrices
156
+ \def\rmA{{\mathbf{A}}}
157
+ \def\rmB{{\mathbf{B}}}
158
+ \def\rmC{{\mathbf{C}}}
159
+ \def\rmD{{\mathbf{D}}}
160
+ \def\rmE{{\mathbf{E}}}
161
+ \def\rmF{{\mathbf{F}}}
162
+ \def\rmG{{\mathbf{G}}}
163
+ \def\rmH{{\mathbf{H}}}
164
+ \def\rmI{{\mathbf{I}}}
165
+ \def\rmJ{{\mathbf{J}}}
166
+ \def\rmK{{\mathbf{K}}}
167
+ \def\rmL{{\mathbf{L}}}
168
+ \def\rmM{{\mathbf{M}}}
169
+ \def\rmN{{\mathbf{N}}}
170
+ \def\rmO{{\mathbf{O}}}
171
+ \def\rmP{{\mathbf{P}}}
172
+ \def\rmQ{{\mathbf{Q}}}
173
+ \def\rmR{{\mathbf{R}}}
174
+ \def\rmS{{\mathbf{S}}}
175
+ \def\rmT{{\mathbf{T}}}
176
+ \def\rmU{{\mathbf{U}}}
177
+ \def\rmV{{\mathbf{V}}}
178
+ \def\rmW{{\mathbf{W}}}
179
+ \def\rmX{{\mathbf{X}}}
180
+ \def\rmY{{\mathbf{Y}}}
181
+ \def\rmZ{{\mathbf{Z}}}
182
+
183
+ % Elements of random matrices
184
+ \def\ermA{{\textnormal{A}}}
185
+ \def\ermB{{\textnormal{B}}}
186
+ \def\ermC{{\textnormal{C}}}
187
+ \def\ermD{{\textnormal{D}}}
188
+ \def\ermE{{\textnormal{E}}}
189
+ \def\ermF{{\textnormal{F}}}
190
+ \def\ermG{{\textnormal{G}}}
191
+ \def\ermH{{\textnormal{H}}}
192
+ \def\ermI{{\textnormal{I}}}
193
+ \def\ermJ{{\textnormal{J}}}
194
+ \def\ermK{{\textnormal{K}}}
195
+ \def\ermL{{\textnormal{L}}}
196
+ \def\ermM{{\textnormal{M}}}
197
+ \def\ermN{{\textnormal{N}}}
198
+ \def\ermO{{\textnormal{O}}}
199
+ \def\ermP{{\textnormal{P}}}
200
+ \def\ermQ{{\textnormal{Q}}}
201
+ \def\ermR{{\textnormal{R}}}
202
+ \def\ermS{{\textnormal{S}}}
203
+ \def\ermT{{\textnormal{T}}}
204
+ \def\ermU{{\textnormal{U}}}
205
+ \def\ermV{{\textnormal{V}}}
206
+ \def\ermW{{\textnormal{W}}}
207
+ \def\ermX{{\textnormal{X}}}
208
+ \def\ermY{{\textnormal{Y}}}
209
+ \def\ermZ{{\textnormal{Z}}}
210
+
211
+ % Vectors
212
+ \def\vzero{{\bm{0}}}
213
+ \def\vone{{\bm{1}}}
214
+ \def\vmu{{\bm{\mu}}}
215
+ \def\vtheta{{\bm{\theta}}}
216
+ \def\va{{\bm{a}}}
217
+ \def\vb{{\bm{b}}}
218
+ \def\vc{{\bm{c}}}
219
+ \def\vd{{\bm{d}}}
220
+ \def\ve{{\bm{e}}}
221
+ \def\vf{{\bm{f}}}
222
+ \def\vg{{\bm{g}}}
223
+ \def\vh{{\bm{h}}}
224
+ \def\vi{{\bm{i}}}
225
+ \def\vj{{\bm{j}}}
226
+ \def\vk{{\bm{k}}}
227
+ \def\vl{{\bm{l}}}
228
+ \def\vm{{\bm{m}}}
229
+ \def\vn{{\bm{n}}}
230
+ \def\vo{{\bm{o}}}
231
+ \def\vp{{\bm{p}}}
232
+ \def\vq{{\bm{q}}}
233
+ \def\vr{{\bm{r}}}
234
+ \def\vs{{\bm{s}}}
235
+ \def\vt{{\bm{t}}}
236
+ \def\vu{{\bm{u}}}
237
+ \def\vv{{\bm{v}}}
238
+ \def\vw{{\bm{w}}}
239
+ \def\vx{{\bm{x}}}
240
+ \def\vy{{\bm{y}}}
241
+ \def\vz{{\bm{z}}}
242
+
243
+ % Elements of vectors
244
+ \def\evalpha{{\alpha}}
245
+ \def\evbeta{{\beta}}
246
+ \def\evepsilon{{\epsilon}}
247
+ \def\evlambda{{\lambda}}
248
+ \def\evomega{{\omega}}
249
+ \def\evmu{{\mu}}
250
+ \def\evpsi{{\psi}}
251
+ \def\evsigma{{\sigma}}
252
+ \def\evtheta{{\theta}}
253
+ \def\eva{{a}}
254
+ \def\evb{{b}}
255
+ \def\evc{{c}}
256
+ \def\evd{{d}}
257
+ \def\eve{{e}}
258
+ \def\evf{{f}}
259
+ \def\evg{{g}}
260
+ \def\evh{{h}}
261
+ \def\evi{{i}}
262
+ \def\evj{{j}}
263
+ \def\evk{{k}}
264
+ \def\evl{{l}}
265
+ \def\evm{{m}}
266
+ \def\evn{{n}}
267
+ \def\evo{{o}}
268
+ \def\evp{{p}}
269
+ \def\evq{{q}}
270
+ \def\evr{{r}}
271
+ \def\evs{{s}}
272
+ \def\evt{{t}}
273
+ \def\evu{{u}}
274
+ \def\evv{{v}}
275
+ \def\evw{{w}}
276
+ \def\evx{{x}}
277
+ \def\evy{{y}}
278
+ \def\evz{{z}}
279
+
280
+ % Matrix
281
+ \def\mA{{\bm{A}}}
282
+ \def\mB{{\bm{B}}}
283
+ \def\mC{{\bm{C}}}
284
+ \def\mD{{\bm{D}}}
285
+ \def\mE{{\bm{E}}}
286
+ \def\mF{{\bm{F}}}
287
+ \def\mG{{\bm{G}}}
288
+ \def\mH{{\bm{H}}}
289
+ \def\mI{{\bm{I}}}
290
+ \def\mJ{{\bm{J}}}
291
+ \def\mK{{\bm{K}}}
292
+ \def\mL{{\bm{L}}}
293
+ \def\mM{{\bm{M}}}
294
+ \def\mN{{\bm{N}}}
295
+ \def\mO{{\bm{O}}}
296
+ \def\mP{{\bm{P}}}
297
+ \def\mQ{{\bm{Q}}}
298
+ \def\mR{{\bm{R}}}
299
+ \def\mS{{\bm{S}}}
300
+ \def\mT{{\bm{T}}}
301
+ \def\mU{{\bm{U}}}
302
+ \def\mV{{\bm{V}}}
303
+ \def\mW{{\bm{W}}}
304
+ \def\mX{{\bm{X}}}
305
+ \def\mY{{\bm{Y}}}
306
+ \def\mZ{{\bm{Z}}}
307
+ \def\mBeta{{\bm{\beta}}}
308
+ \def\mPhi{{\bm{\Phi}}}
309
+ \def\mLambda{{\bm{\Lambda}}}
310
+ \def\mSigma{{\bm{\Sigma}}}
311
+
312
+ % Tensor
313
+ \DeclareMathAlphabet{\mathsfit}{\encodingdefault}{\sfdefault}{m}{sl}
314
+ \SetMathAlphabet{\mathsfit}{bold}{\encodingdefault}{\sfdefault}{bx}{n}
315
+ \newcommand{\tens}[1]{\bm{\mathsfit{#1}}}
316
+ \def\tA{{\tens{A}}}
317
+ \def\tB{{\tens{B}}}
318
+ \def\tC{{\tens{C}}}
319
+ \def\tD{{\tens{D}}}
320
+ \def\tE{{\tens{E}}}
321
+ \def\tF{{\tens{F}}}
322
+ \def\tG{{\tens{G}}}
323
+ \def\tH{{\tens{H}}}
324
+ \def\tI{{\tens{I}}}
325
+ \def\tJ{{\tens{J}}}
326
+ \def\tK{{\tens{K}}}
327
+ \def\tL{{\tens{L}}}
328
+ \def\tM{{\tens{M}}}
329
+ \def\tN{{\tens{N}}}
330
+ \def\tO{{\tens{O}}}
331
+ \def\tP{{\tens{P}}}
332
+ \def\tQ{{\tens{Q}}}
333
+ \def\tR{{\tens{R}}}
334
+ \def\tS{{\tens{S}}}
335
+ \def\tT{{\tens{T}}}
336
+ \def\tU{{\tens{U}}}
337
+ \def\tV{{\tens{V}}}
338
+ \def\tW{{\tens{W}}}
339
+ \def\tX{{\tens{X}}}
340
+ \def\tY{{\tens{Y}}}
341
+ \def\tZ{{\tens{Z}}}
342
+
343
+
344
+ % Graph
345
+ \def\gA{{\mathcal{A}}}
346
+ \def\gB{{\mathcal{B}}}
347
+ \def\gC{{\mathcal{C}}}
348
+ \def\gD{{\mathcal{D}}}
349
+ \def\gE{{\mathcal{E}}}
350
+ \def\gF{{\mathcal{F}}}
351
+ \def\gG{{\mathcal{G}}}
352
+ \def\gH{{\mathcal{H}}}
353
+ \def\gI{{\mathcal{I}}}
354
+ \def\gJ{{\mathcal{J}}}
355
+ \def\gK{{\mathcal{K}}}
356
+ \def\gL{{\mathcal{L}}}
357
+ \def\gM{{\mathcal{M}}}
358
+ \def\gN{{\mathcal{N}}}
359
+ \def\gO{{\mathcal{O}}}
360
+ \def\gP{{\mathcal{P}}}
361
+ \def\gQ{{\mathcal{Q}}}
362
+ \def\gR{{\mathcal{R}}}
363
+ \def\gS{{\mathcal{S}}}
364
+ \def\gT{{\mathcal{T}}}
365
+ \def\gU{{\mathcal{U}}}
366
+ \def\gV{{\mathcal{V}}}
367
+ \def\gW{{\mathcal{W}}}
368
+ \def\gX{{\mathcal{X}}}
369
+ \def\gY{{\mathcal{Y}}}
370
+ \def\gZ{{\mathcal{Z}}}
371
+
372
+ % Sets
373
+ \def\sA{{\mathbb{A}}}
374
+ \def\sB{{\mathbb{B}}}
375
+ \def\sC{{\mathbb{C}}}
376
+ \def\sD{{\mathbb{D}}}
377
+ % Don't use a set called E, because this would be the same as our symbol
378
+ % for expectation.
379
+ \def\sF{{\mathbb{F}}}
380
+ \def\sG{{\mathbb{G}}}
381
+ \def\sH{{\mathbb{H}}}
382
+ \def\sI{{\mathbb{I}}}
383
+ \def\sJ{{\mathbb{J}}}
384
+ \def\sK{{\mathbb{K}}}
385
+ \def\sL{{\mathbb{L}}}
386
+ \def\sM{{\mathbb{M}}}
387
+ \def\sN{{\mathbb{N}}}
388
+ \def\sO{{\mathbb{O}}}
389
+ \def\sP{{\mathbb{P}}}
390
+ \def\sQ{{\mathbb{Q}}}
391
+ \def\sR{{\mathbb{R}}}
392
+ \def\sS{{\mathbb{S}}}
393
+ \def\sT{{\mathbb{T}}}
394
+ \def\sU{{\mathbb{U}}}
395
+ \def\sV{{\mathbb{V}}}
396
+ \def\sW{{\mathbb{W}}}
397
+ \def\sX{{\mathbb{X}}}
398
+ \def\sY{{\mathbb{Y}}}
399
+ \def\sZ{{\mathbb{Z}}}
400
+
401
+ % Entries of a matrix
402
+ \def\emLambda{{\Lambda}}
403
+ \def\emA{{A}}
404
+ \def\emB{{B}}
405
+ \def\emC{{C}}
406
+ \def\emD{{D}}
407
+ \def\emE{{E}}
408
+ \def\emF{{F}}
409
+ \def\emG{{G}}
410
+ \def\emH{{H}}
411
+ \def\emI{{I}}
412
+ \def\emJ{{J}}
413
+ \def\emK{{K}}
414
+ \def\emL{{L}}
415
+ \def\emM{{M}}
416
+ \def\emN{{N}}
417
+ \def\emO{{O}}
418
+ \def\emP{{P}}
419
+ \def\emQ{{Q}}
420
+ \def\emR{{R}}
421
+ \def\emS{{S}}
422
+ \def\emT{{T}}
423
+ \def\emU{{U}}
424
+ \def\emV{{V}}
425
+ \def\emW{{W}}
426
+ \def\emX{{X}}
427
+ \def\emY{{Y}}
428
+ \def\emZ{{Z}}
429
+ \def\emSigma{{\Sigma}}
430
+
431
+ % entries of a tensor
432
+ % Same font as tensor, without \bm wrapper
433
+ \newcommand{\etens}[1]{\mathsfit{#1}}
434
+ \def\etLambda{{\etens{\Lambda}}}
435
+ \def\etA{{\etens{A}}}
436
+ \def\etB{{\etens{B}}}
437
+ \def\etC{{\etens{C}}}
438
+ \def\etD{{\etens{D}}}
439
+ \def\etE{{\etens{E}}}
440
+ \def\etF{{\etens{F}}}
441
+ \def\etG{{\etens{G}}}
442
+ \def\etH{{\etens{H}}}
443
+ \def\etI{{\etens{I}}}
444
+ \def\etJ{{\etens{J}}}
445
+ \def\etK{{\etens{K}}}
446
+ \def\etL{{\etens{L}}}
447
+ \def\etM{{\etens{M}}}
448
+ \def\etN{{\etens{N}}}
449
+ \def\etO{{\etens{O}}}
450
+ \def\etP{{\etens{P}}}
451
+ \def\etQ{{\etens{Q}}}
452
+ \def\etR{{\etens{R}}}
453
+ \def\etS{{\etens{S}}}
454
+ \def\etT{{\etens{T}}}
455
+ \def\etU{{\etens{U}}}
456
+ \def\etV{{\etens{V}}}
457
+ \def\etW{{\etens{W}}}
458
+ \def\etX{{\etens{X}}}
459
+ \def\etY{{\etens{Y}}}
460
+ \def\etZ{{\etens{Z}}}
461
+
462
+ % The true underlying data generating distribution
463
+ \newcommand{\pdata}{p_{\rm{data}}}
464
+ % The empirical distribution defined by the training set
465
+ \newcommand{\ptrain}{\hat{p}_{\rm{data}}}
466
+ \newcommand{\Ptrain}{\hat{P}_{\rm{data}}}
467
+ % The model distribution
468
+ \newcommand{\pmodel}{p_{\rm{model}}}
469
+ \newcommand{\Pmodel}{P_{\rm{model}}}
470
+ \newcommand{\ptildemodel}{\tilde{p}_{\rm{model}}}
471
+ % Stochastic autoencoder distributions
472
+ \newcommand{\pencode}{p_{\rm{encoder}}}
473
+ \newcommand{\pdecode}{p_{\rm{decoder}}}
474
+ \newcommand{\precons}{p_{\rm{reconstruct}}}
475
+
476
+ \newcommand{\laplace}{\mathrm{Laplace}} % Laplace distribution
477
+
478
+ \newcommand{\E}{\mathbb{E}}
479
+ \newcommand{\Ls}{\mathcal{L}}
480
+ \newcommand{\R}{\mathbb{R}}
481
+ \newcommand{\emp}{\tilde{p}}
482
+ \newcommand{\lr}{\alpha}
483
+ \newcommand{\reg}{\lambda}
484
+ \newcommand{\rect}{\mathrm{rectifier}}
485
+ \newcommand{\softmax}{\mathrm{softmax}}
486
+ \newcommand{\sigmoid}{\sigma}
487
+ \newcommand{\softplus}{\zeta}
488
+ \newcommand{\KL}{D_{\mathrm{KL}}}
489
+ \newcommand{\Var}{\mathrm{Var}}
490
+ \newcommand{\standarderror}{\mathrm{SE}}
491
+ \newcommand{\Cov}{\mathrm{Cov}}
492
+ % Wolfram Mathworld says $L^2$ is for function spaces and $\ell^2$ is for vectors
493
+ % But then they seem to use $L^2$ for vectors throughout the site, and so does
494
+ % wikipedia.
495
+ \newcommand{\normlzero}{L^0}
496
+ \newcommand{\normlone}{L^1}
497
+ \newcommand{\normltwo}{L^2}
498
+ \newcommand{\normlp}{L^p}
499
+ \newcommand{\normmax}{L^\infty}
500
+
501
+ \newcommand{\parents}{Pa} % See usage in notation.tex. Chosen to match Daphne's book.
502
+
503
+ \DeclareMathOperator*{\argmax}{arg\,max}
504
+ \DeclareMathOperator*{\argmin}{arg\,min}
505
+
506
+ \DeclareMathOperator{\sign}{sign}
507
+ \DeclareMathOperator{\Tr}{Tr}
508
+ \let\ab\allowbreak