npm - @reposkein/mcp - Versions diffs - 0.7.0 → 0.9.0 - Mend

@reposkein/mcp 0.7.0 → 0.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (67) hide show

package/README.md +1 -0
package/binary-digests.json +4 -4
package/dist/SKILL.md +22 -0
package/dist/cli/doctor.d.ts +2 -2
package/dist/cli/doctor.js +8 -4
package/dist/cli/doctor.js.map +1 -1
package/dist/cli/doctorFreshness.d.ts +6 -0
package/dist/cli/doctorFreshness.js +23 -0
package/dist/cli/doctorFreshness.js.map +1 -1
package/dist/cli/migrate.d.ts +26 -0
package/dist/cli/migrate.js +208 -0
package/dist/cli/migrate.js.map +1 -0
package/dist/embed/batch.d.ts +47 -0
package/dist/embed/batch.js +92 -0
package/dist/embed/batch.js.map +1 -0
package/dist/embed/cache.d.ts +22 -48
package/dist/embed/cache.js +44 -164
package/dist/embed/cache.js.map +1 -1
package/dist/embed/corpusVectors.d.ts +20 -0
package/dist/embed/corpusVectors.js +60 -0
package/dist/embed/corpusVectors.js.map +1 -0
package/dist/embed/provider.d.ts +21 -2
package/dist/embed/provider.js.map +1 -1
package/dist/embed/providers/http.d.ts +3 -2
package/dist/embed/providers/http.js +14 -1
package/dist/embed/providers/http.js.map +1 -1
package/dist/embed/providers/voyage.d.ts +3 -2
package/dist/embed/providers/voyage.js +50 -54
package/dist/embed/providers/voyage.js.map +1 -1
package/dist/embed/vectorStore.d.ts +89 -0
package/dist/embed/vectorStore.js +267 -0
package/dist/embed/vectorStore.js.map +1 -0
package/dist/guard/caps.d.ts +3 -0
package/dist/guard/caps.js +4 -1
package/dist/guard/caps.js.map +1 -1
package/dist/index.js +16 -1
package/dist/index.js.map +1 -1
package/dist/search/bm25f.d.ts +17 -1
package/dist/search/bm25f.js +89 -53
package/dist/search/bm25f.js.map +1 -1
package/dist/store/GraphStore.d.ts +6 -1
package/dist/store/JsonlGraphStore.d.ts +47 -10
package/dist/store/JsonlGraphStore.js +129 -50
package/dist/store/JsonlGraphStore.js.map +1 -1
package/dist/store/Neo4jGraphStore.d.ts +11 -0
package/dist/store/Neo4jGraphStore.js +29 -2
package/dist/store/Neo4jGraphStore.js.map +1 -1
package/dist/store/instrumentTool.d.ts +9 -1
package/dist/store/instrumentTool.js +33 -2
package/dist/store/instrumentTool.js.map +1 -1
package/dist/store/jsonlGraph.d.ts +22 -0
package/dist/store/jsonlGraph.js +75 -18
package/dist/store/jsonlGraph.js.map +1 -1
package/dist/store/jsonlLines.d.ts +21 -0
package/dist/store/jsonlLines.js +64 -0
package/dist/store/jsonlLines.js.map +1 -0
package/dist/store/repoSession.d.ts +19 -0
package/dist/store/repoSession.js +25 -0
package/dist/store/repoSession.js.map +1 -1
package/dist/store/trackedGraph.d.ts +14 -0
package/dist/store/trackedGraph.js +39 -0
package/dist/store/trackedGraph.js.map +1 -0
package/dist/tools/readCypher.js +9 -2
package/dist/tools/readCypher.js.map +1 -1
package/dist/tools/semanticFind.js +9 -6
package/dist/tools/semanticFind.js.map +1 -1
package/package.json +1 -1

package/dist/store/JsonlGraphStore.js.map CHANGED Viewed

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package/dist/store/Neo4jGraphStore.d.ts CHANGED Viewed

@@ -18,8 +18,19 @@ export declare class Neo4jGraphStore implements GraphStore {
     writeSummary(repoId: string, id: string, fields: SummaryFields): Promise<WriteSummaryResult>;
     searchCorpus(repoIds: string[]): Promise<CorpusNode[]>;
     federatedRepoIds(repoId: string): Promise<string[]>;
+    /**
+     * Run a read query, optionally stopping after `maxRows`.
+     *
+     * The cap is applied WHILE streaming, not after. `session.run()` in promise
+     * mode buffers every record and then `.map(toObject)` built a second full
+     * array beside it — so `MATCH (n) RETURN n` pulled the whole database into
+     * heap in two representations, and the caller's 200-row cap then threw
+     * almost all of it away. Iterating the Result consumes it in `fetchSize`
+     * pages, so breaking early means the rest is never materialised at all.
+     */
     runRead(query: string, params?: Record<string, unknown>, opts?: {
         timeoutMs?: number;
+        maxRows?: number;
     }): Promise<Record<string, unknown>[]>;
     runWrite(query: string, params?: Record<string, unknown>, opts?: {
         timeoutMs?: number;

package/dist/store/Neo4jGraphStore.js CHANGED Viewed

@@ -4,6 +4,15 @@ export class Neo4jGraphStore {
     constructor(uri, user, password) {
         this.driver = neo4j.driver(uri, neo4j.auth.basic(user, password), {
             disableLosslessIntegers: true,
+            // Stream in pages instead of letting the driver buffer whatever the
+            // server sends. Without this a broad query materialises the entire
+            // result before anyone can look at it.
+            fetchSize: 1000,
+            // The default pool is 100. A stdio MCP server is one agent; a shared
+            // `serve --http` process should not be able to open a hundred sockets
+            // to one database either.
+            maxConnectionPoolSize: 16,
+            connectionAcquisitionTimeout: 30_000,
         });
     }
     /** Connect using env: NEO4J_URI / NEO4J_USER / NEO4J_PASSWORD. */
@@ -131,15 +140,33 @@ export class Neo4jGraphStore {
                 ids.push(r.id);
         return ids;
     }
+    /**
+     * Run a read query, optionally stopping after `maxRows`.
+     *
+     * The cap is applied WHILE streaming, not after. `session.run()` in promise
+     * mode buffers every record and then `.map(toObject)` built a second full
+     * array beside it — so `MATCH (n) RETURN n` pulled the whole database into
+     * heap in two representations, and the caller's 200-row cap then threw
+     * almost all of it away. Iterating the Result consumes it in `fetchSize`
+     * pages, so breaking early means the rest is never materialised at all.
+     */
     async runRead(query, params = {}, opts = {}) {
         const session = this.driver.session({
             defaultAccessMode: neo4j.session.READ,
         });
+        const max = opts.maxRows;
         try {
-            const result = await session.run(query, params, {
+            const result = session.run(query, params, {
                 timeout: opts.timeoutMs ?? 10_000,
             });
-            return result.records.map((r) => r.toObject());
+            const rows = [];
+            for await (const record of result) {
+                rows.push(record.toObject());
+                // One past the cap, so the caller can still report `truncated`.
+                if (max !== undefined && rows.length > max)
+                    break;
+            }
+            return rows;
         }
         finally {
             await session.close();

package/dist/store/Neo4jGraphStore.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"Neo4jGraphStore.js","sourceRoot":"","sources":["../../src/store/Neo4jGraphStore.ts"],"names":[],"mappings":"AAAA,OAAO,KAAsB,MAAM,cAAc,CAAC;AAUlD,MAAM,OAAO,eAAe;IAClB,MAAM,CAAS;IAEvB,YAAY,GAAW,EAAE,IAAY,EAAE,QAAgB;QACrD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAC,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,QAAQ,CAAC,EAAE;YAChE,uBAAuB,EAAE,IAAI;YAC7B,oEAAoE;YACpE,mEAAmE;YACnE,uCAAuC;YACvC,SAAS,EAAE,IAAI;YACf,qEAAqE;YACrE,sEAAsE;YACtE,0BAA0B;YAC1B,qBAAqB,EAAE,EAAE;YACzB,4BAA4B,EAAE,MAAM;SACrC,CAAC,CAAC;IACL,CAAC;IAED,kEAAkE;IAClE,MAAM,CAAC,OAAO;QACZ,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,IAAI,wBAAwB,CAAC;QAC9D,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,UAAU,IAAI,OAAO,CAAC;QAC/C,MAAM,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC;QAC5C,IAAI,CAAC,QAAQ;YAAE,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAC;QAC7D,OAAO,IAAI,eAAe,CAAC,GAAG,EAAE,IAAI,EAAE,QAAQ,CAAC,CAAC;IAClD,CAAC;IAED,wEAAwE;IAChE,MAAM,CAAC,aAAa,GAC1B,4FAA4F;QAC5F,8FAA8F;QAC9F,wEAAwE;QACxE,kEAAkE,CAAC;IAErE,2EAA2E;IAC3E,8CAA8C;IACtC,MAAM,CAAC,eAAe,GAC5B,2EAA2E;QAC3E,4FAA4F,CAAC;IAEvF,MAAM,CAAC,WAAW,CAAC,CAA0B;QACnD,OAAO;YACL,EAAE,EAAE,CAAC,CAAC,EAAY;YAClB,OAAO,EAAG,CAAC,CAAC,OAAkB,IAAI,EAAE;YACpC,IAAI,EAAE,CAAC,CAAC,IAAc;YACtB,cAAc,EAAG,CAAC,CAAC,cAAyB,IAAK,CAAC,CAAC,IAAe;YAClE,SAAS,EAAG,CAAC,CAAC,SAAoB,IAAI,EAAE;YACxC,UAAU,EAAG,CAAC,CAAC,UAAqB,IAAI,CAAC;YACzC,QAAQ,EAAG,CAAC,CAAC,QAAmB,IAAI,CAAC;YACrC,gBAAgB,EAAG,CAAC,CAAC,gBAA2B,IAAI,IAAI;YACxD,eAAe,EAAG,CAAC,CAAC,eAA0B,IAAI,IAAI;YACtD,YAAY,EAAG,CAAC,CAAC,YAAuB,IAAI,IAAI;YAChD,MAAM,EAAG,CAAC,CAAC,MAAmB,IAAI,EAAE;SACrC,CAAC;IACJ,CAAC;IAEO,MAAM,CAAC,aAAa,CAAC,CAA0B;QACrD,MAAM,GAAG,GAAgB;YACvB,EAAE,EAAE,CAAC,CAAC,EAAY;YAClB,IAAI,EAAG,CAAC,CAAC,IAAe,IAAI,EAAE;YAC9B,gBAAgB,EAAG,CAAC,CAAC,gBAA2B,IAAI,IAAI;YACxD,eAAe,EAAG,CAAC,CAAC,eAA0B,IAAI,IAAI;YACtD,YAAY,EAAG,CAAC,CAAC,YAAuB,IAAI,IAAI;SACjD,CAAC;QACF,IAAI,CAAC,CAAC,UAAU,KAAK,SAAS,IAAI,CAAC,CAAC,UAAU,KAAK,IAAI;YACrD,GAAG,CAAC,UAAU,GAAG,CAAC,CAAC,UAAoB,CAAC;QAC1C,IAAI,CAAC,CAAC,UAAU,KAAK,SAAS,IAAI,CAAC,CAAC,UAAU,KAAK,IAAI;YACrD,GAAG,CAAC,UAAU,GAAG,CAAC,CAAC,UAAoB,CAAC;QAC1C,IAAI,OAAO,CAAC,CAAC,OAAO,KAAK,QAAQ;YAAE,GAAG,CAAC,OAAO,GAAG,CAAC,CAAC,OAAO,CAAC;QAC3D,IAAI,CAAC,CAAC,UAAU,KAAK,IAAI;YAAE,GAAG,CAAC,UAAU,GAAG,IAAI,CAAC;QACjD,OAAO,GAAG,CAAC;IACb,CAAC;IAED,KAAK,CAAC,OAAO,CAAC,OAAiB,EAAE,EAAU;QACzC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B,6DAA6D,eAAe,CAAC,aAAa,EAAE,EAC5F,EAAE,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE,CAC1B,CAAC;QACF,OAAO,IAAI,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC1E,CAAC;IAED,KAAK,CAAC,oBAAoB,CACxB,OAAiB,EACjB,QAAgB,EAChB,IAAY;QAEZ,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B,iCAAiC;YAC/B,4GAA4G;YAC5G,UAAU,eAAe,CAAC,aAAa,EAAE,EAC3C,EAAE,QAAQ,EAAE,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,CAC5C,CAAC;QACF,OAAO,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,WAAW,CAAC,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,aAAa,CAAC,OAAiB,EAAE,IAAY;QACjD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B,uEAAuE,eAAe,CAAC,aAAa,EAAE,EACtG,EAAE,QAAQ,EAAE,OAAO,EAAE,IAAI,EAAE,CAC5B,CAAC;QACF,OAAO,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,WAAW,CAAC,CAAC;IAC/C,CAAC;IAED,KAAK,CAAC,OAAO,CAAC,OAAiB,EAAE,EAAU,EAAE,KAAa;QACxD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B,6EAA6E;YAC3E,eAAe,eAAe,CAAC,eAAe,uFAAuF;YACrI,4BAA4B,EAC9B,EAAE,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CACnD,CAAC;QACF,OAAO,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,aAAa,CAAC,CAAC;IACjD,CAAC;IAED,KAAK,CAAC,OAAO,CAAC,OAAiB,EAAE,EAAU,EAAE,KAAa;QACxD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B,6EAA6E;YAC3E,eAAe,eAAe,CAAC,eAAe,uFAAuF;YACrI,4BAA4B,EAC9B,EAAE,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CACnD,CAAC;QACF,OAAO,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,aAAa,CAAC,CAAC;IACjD,CAAC;IAED,KAAK,CAAC,cAAc,CAAC,OAAiB,EAAE,EAAU,EAAE,KAAa;QAC/D,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B,iFAAiF;YAC/E,wBAAwB,eAAe,CAAC,eAAe,GAAG;YAC1D,4BAA4B,EAC9B,EAAE,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CACnD,CAAC;QACF,OAAO,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,aAAa,CAAC,CAAC;IACjD,CAAC;IAED,KAAK,CAAC,YAAY,CAChB,MAAc,EACd,EAAU,EACV,MAAqB;QAErB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B,uCAAuC;YACrC,yFAAyF,EAC3F,EAAE,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CACrB,CAAC;QACF,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC;QACpD,MAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAE,CAAC;QACrB,IAAI,GAAG,CAAC,KAAK,KAAK,IAAI,IAAI,GAAG,CAAC,KAAK,KAAK,SAAS,EAAE,CAAC;YAClD,OAAO,EAAE,IAAI,EAAE,iBAAiB,EAAE,CAAC;QACrC,CAAC;QACD,MAAM,cAAc,GAClB,GAAG,CAAC,GAAG,IAAI,IAAI,IAAI,CAAC,GAAG,CAAC,OAAO,IAAI,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,IAAI,IAAI,CAAC,CAAC;QACnE,MAAM,IAAI,CAAC,QAAQ,CACjB,uCAAuC;YACrC,+DAA+D;YAC/D,wDAAwD,EAC1D,EAAE,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,CAAC,OAAO,EAAE,CAAC,EAAE,MAAM,CAAC,KAAK,EAAE,EAAE,EAAE,MAAM,CAAC,EAAE,EAAE,EAAE,EAAE,MAAM,CAAC,EAAE,EAAE,CACvF,CAAC;QACF,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,cAAc,EAAE,CAAC;IACxC,CAAC;IAED,KAAK,CAAC,YAAY,CAAC,OAAiB;QAClC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAC7B;;;;;qBAKe,EACf,EAAE,QAAQ,EAAE,OAAO,EAAE,CACtB,CAAC;QACF,OAAO,IAA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package/dist/store/instrumentTool.d.ts CHANGED Viewed

@@ -36,5 +36,13 @@ export interface ToolLogger {
  *     (default `setImmediate`), which runs only after the response has
  *     already been handed back to the MCP transport. The deferred callback
  *     swallows every error itself — it must never surface as an unhandled
- *     exception/rejection. */
+ *     exception/rejection.
+ *
+ *  A third constraint added by the REP-35 tracked-graph warning below:
+ *  `session.takeTrackedGraphWarning()` can itself shell out to git on the
+ *  FIRST call for a repo, so it must (a) reuse `cachedResolve()` rather than
+ *  calling `session.resolve()` a second time (preserves fix 1), and (b) run
+ *  strictly AFTER `ts` is captured, so its cost is never attributed to the
+ *  call's logged timestamp (preserves fix 2's "ts is call-completion time,
+ *  not deferred-write time" contract). */
 export declare function createToolLogger(session: RepoSession, sessionLogger: SessionLogger, schedule?: (fn: () => void) => void): ToolLogger;

package/dist/store/instrumentTool.js CHANGED Viewed

@@ -20,7 +20,15 @@ import { argsShapeOf, extractTouchedIds, resultByteSize } from "./sessionLog.js"
  *     (default `setImmediate`), which runs only after the response has
  *     already been handed back to the MCP transport. The deferred callback
  *     swallows every error itself — it must never surface as an unhandled
- *     exception/rejection. */
+ *     exception/rejection.
+ *
+ *  A third constraint added by the REP-35 tracked-graph warning below:
+ *  `session.takeTrackedGraphWarning()` can itself shell out to git on the
+ *  FIRST call for a repo, so it must (a) reuse `cachedResolve()` rather than
+ *  calling `session.resolve()` a second time (preserves fix 1), and (b) run
+ *  strictly AFTER `ts` is captured, so its cost is never attributed to the
+ *  call's logged timestamp (preserves fix 2's "ts is call-completion time,
+ *  not deferred-write time" contract). */
 export function createToolLogger(session, sessionLogger, schedule = setImmediate) {
     const als = new AsyncLocalStorage();
     function cachedResolve() {
@@ -53,8 +61,31 @@ export function createToolLogger(session, sessionLogger, schedule = setImmediate
         return (args) => als.run({}, async () => {
             let result;
             let threw = false;
+            // Captured right when `cb` finishes — see (3) below; the `finally`
+            // block reuses it rather than re-stamping after the warning-append
+            // work runs.
+            let ts;
             try {
                 result = await cb(args);
+                ts = new Date().toISOString();
+                try {
+                    // REP-35: surface the tracked-graph hazard on the FIRST successful
+                    // tool call that resolves to an affected repo — once per repo per
+                    // session, appended as an extra content item so no handler needs
+                    // to know about it. Reuses `cachedResolve()` (not
+                    // `session.resolve()` directly) so this never costs a second,
+                    // unmemoized resolution for the same call — see (1) above.
+                    if (result?.isError !== true) {
+                        const warning = session.takeTrackedGraphWarning(cachedResolve().repoPath);
+                        const content = result?.content;
+                        if (warning && Array.isArray(content)) {
+                            content.push({ type: "text", text: JSON.stringify({ warning }) });
+                        }
+                    }
+                }
+                catch {
+                    // the warning must never break a tool call
+                }
                 return result;
             }
             catch (err) {
@@ -68,7 +99,7 @@ export function createToolLogger(session, sessionLogger, schedule = setImmediate
                 try {
                     const resolution = cachedResolve();
                     if (resolution.repoPath) {
-                        deferredLog(new Date().toISOString(), resolution.repoPath, name, argsShapeOf(args), !threw && result?.isError !== true, result);
+                        deferredLog(ts ?? new Date().toISOString(), resolution.repoPath, name, argsShapeOf(args), !threw && result?.isError !== true, result);
                     }
                 }
                 catch {

package/dist/store/instrumentTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/store/jsonlGraph.d.ts CHANGED Viewed

@@ -22,6 +22,13 @@ export interface ParsedGraph {
     nodes: ParsedNode[];
     edges: ParsedEdge[];
 }
+/** Reuse one string per distinct id.
+ *
+ *  An id appears once in nodes.jsonl and twice more per edge (`from`, `to`).
+ *  At two edges per node that is three copies of a ~90-character string for
+ *  every node in the graph, none of which JSON.parse deduplicates for us. */
+export type Interner = (s: string) => string;
+export declare function makeInterner(): Interner;
 export declare function parseNodes(text: string, repoId: string): ParsedNode[];
 export declare function parseEdges(text: string): ParsedEdge[];
 /** Builds lookup indices from parsed node/edge text. */
@@ -33,6 +40,18 @@ export interface RepoSource {
     nodesText: string;
     edgesText: string;
 }
+/** A repo as LINES rather than text.
+ *
+ *  This is the whole point of the streaming load: the caller decides where the
+ *  lines come from, so production can hand over a lazy file reader while tests
+ *  hand over an array. An `Iterable<string>` is every bit as pure as a
+ *  `string` — the module comment above claimed purity forced whole-file text,
+ *  and it never did. */
+export interface RepoLines {
+    repoId: string;
+    nodes: Iterable<string>;
+    edges: Iterable<string>;
+}
 /** Builds one merged graph from several repos' committed JSONL, then injects
  *  DB-only-style cross-repo edges (M3 + M4):
  *  - IMPORTS edges (File→File) from external_import_targets (parity with Neo4j
@@ -40,4 +59,7 @@ export interface RepoSource {
  *  - CALLS edges (Function→Function) from external_calls, import-scoped first
  *    (confidence 0.6) with federation-wide unique fallback (0.5); ambiguous
  *    skipped. Per-name (mirrors Neo4j stitch_cross_repo_calls). */
+/** Text in, graph out — an adapter over the streaming build, kept because it
+ *  is the shape tests want. Production goes through buildFederatedGraphLines. */
 export declare function buildFederatedGraph(repos: RepoSource[]): ParsedGraph;
+export declare function buildFederatedGraphLines(repos: Iterable<RepoLines>): ParsedGraph;

package/dist/store/jsonlGraph.js CHANGED Viewed

@@ -1,29 +1,52 @@
 /** Parses committed RepoSkein JSONL into in-memory records + lookup indices.
  *  Pure (no I/O) so it is trivially testable. Committed JSONL has no repo_id
  *  property — the repo is supplied by the caller (which .reposkein/ was loaded). */
-function parseNodeLine(line, repoId) {
+export function makeInterner() {
+    const pool = new Map();
+    return (s) => {
+        const hit = pool.get(s);
+        if (hit !== undefined)
+            return hit;
+        pool.set(s, s);
+        return s;
+    };
+}
+const identity = (s) => s;
+function parseNodeLine(line, repoId, intern = identity) {
     const obj = JSON.parse(line);
     const id = obj.id;
     const labels = obj.labels;
     if (typeof id !== "string" || !Array.isArray(labels))
         return null;
-    const props = { ...obj };
-    delete props.id;
-    delete props.labels;
-    return { id, repoId, labels: labels.filter((l) => typeof l === "string"), props };
+    // Built by omission rather than by spreading and deleting: the old form
+    // allocated a second object per record only to mutate it back down.
+    const props = {};
+    for (const k in obj) {
+        if (k === "id" || k === "labels")
+            continue;
+        props[k] = obj[k];
+    }
+    return {
+        id: intern(id),
+        repoId,
+        labels: labels.filter((l) => typeof l === "string"),
+        props,
+    };
 }
-function parseEdgeLine(line) {
+function parseEdgeLine(line, intern = identity) {
     const obj = JSON.parse(line);
     const from = obj.from;
     const type = obj.type;
     const to = obj.to;
     if (typeof from !== "string" || typeof type !== "string" || typeof to !== "string")
         return null;
-    const props = { ...obj };
-    delete props.from;
-    delete props.type;
-    delete props.to;
-    return { from, type, to, props };
+    const props = {};
+    for (const k in obj) {
+        if (k === "from" || k === "type" || k === "to")
+            continue;
+        props[k] = obj[k];
+    }
+    return { from: intern(from), type: intern(type), to: intern(to), props };
 }
 export function parseNodes(text, repoId) {
     const out = [];
@@ -76,30 +99,64 @@ const isFunction = (n) => n.labels.includes("Function");
  *  - CALLS edges (Function→Function) from external_calls, import-scoped first
  *    (confidence 0.6) with federation-wide unique fallback (0.5); ambiguous
  *    skipped. Per-name (mirrors Neo4j stitch_cross_repo_calls). */
+/** Text in, graph out — an adapter over the streaming build, kept because it
+ *  is the shape tests want. Production goes through buildFederatedGraphLines. */
 export function buildFederatedGraph(repos) {
+    return buildFederatedGraphLines(repos.map((r) => ({
+        repoId: r.repoId,
+        nodes: r.nodesText.split("\n"),
+        edges: r.edgesText.split("\n"),
+    })));
+}
+export function buildFederatedGraphLines(repos) {
     const byId = new Map();
     const callsFrom = new Map();
     const callsTo = new Map();
     const nodes = [];
     const edges = [];
+    const intern = makeInterner();
     const pushCall = (e) => {
         (callsFrom.get(e.from) ?? callsFrom.set(e.from, []).get(e.from)).push(e);
         (callsTo.get(e.to) ?? callsTo.set(e.to, []).get(e.to)).push(e);
     };
-    // 1) Parse + merge every repo.
+    // 1) Stream every repo straight into the shared maps.
+    //
+    //    No per-repo intermediate graph, and no per-repo text: one line is live
+    //    at a time. Previously each repo was parsed into its own complete
+    //    ParsedGraph and then merged, on top of holding every repo's full text
+    //    for the duration.
     for (const r of repos) {
-        const g = buildGraph(r.nodesText, r.edgesText, r.repoId);
-        for (const n of g.nodes) {
-            if (!byId.has(n.id)) {
+        for (const line of r.nodes) {
+            if (line === "" || line.trim() === "")
+                continue;
+            let n;
+            try {
+                n = parseNodeLine(line, r.repoId, intern);
+            }
+            catch {
+                continue;
+            }
+            if (n && !byId.has(n.id)) {
                 byId.set(n.id, n);
                 nodes.push(n);
             }
         }
-        for (const e of g.edges)
+        for (const line of r.edges) {
+            if (line === "" || line.trim() === "")
+                continue;
+            let e;
+            try {
+                e = parseEdgeLine(line, intern);
+            }
+            catch {
+                continue;
+            }
+            if (!e)
+                continue;
             edges.push(e);
-        for (const [, list] of g.callsFrom)
-            for (const e of list)
+            if (e.type === "CALLS")
                 pushCall(e);
+        }
     }
     // 2) Cross-repo name index: function name -> [{id, repoId, fileId}] (sorted by id).
     const byName = new Map();

package/dist/store/jsonlGraph.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/store/jsonlLines.d.ts ADDED Viewed

@@ -0,0 +1,21 @@
+/**
+ * Synchronous JSONL line reading, without materialising the file.
+ *
+ * The graph load has to stay synchronous — `ensureFresh` is called from every
+ * store method — so `readline` is not available. This reads through a fixed
+ * buffer instead, which keeps peak proportional to the buffer and the longest
+ * line rather than to the file.
+ *
+ * It matters most under federation: `collectRepos` used to hold the COMPLETE
+ * text of every federated repo simultaneously before parsing any of it, so a
+ * root plus ten children meant the whole federation's JSONL was resident at
+ * once. Measured on a 10-child, 130k-node federation (111 MiB on disk), the
+ * load cost 751 MiB RSS — and every `serve --http` session paid it again.
+ */
+/**
+ * Yield each non-empty line of a UTF-8 JSONL file.
+ *
+ * Lazy: nothing is read until iteration starts, and the file is closed when
+ * iteration finishes or the consumer stops early.
+ */
+export declare function readLines(path: string): Generator<string>;

package/dist/store/jsonlLines.js ADDED Viewed

@@ -0,0 +1,64 @@
+/**
+ * Synchronous JSONL line reading, without materialising the file.
+ *
+ * The graph load has to stay synchronous — `ensureFresh` is called from every
+ * store method — so `readline` is not available. This reads through a fixed
+ * buffer instead, which keeps peak proportional to the buffer and the longest
+ * line rather than to the file.
+ *
+ * It matters most under federation: `collectRepos` used to hold the COMPLETE
+ * text of every federated repo simultaneously before parsing any of it, so a
+ * root plus ten children meant the whole federation's JSONL was resident at
+ * once. Measured on a 10-child, 130k-node federation (111 MiB on disk), the
+ * load cost 751 MiB RSS — and every `serve --http` session paid it again.
+ */
+import { closeSync, openSync, readSync } from "node:fs";
+import { StringDecoder } from "node:string_decoder";
+/** 64 KiB: large enough that syscalls are not the bottleneck, small enough to
+ *  be irrelevant next to the parsed graph. */
+const CHUNK = 64 * 1024;
+/**
+ * Yield each non-empty line of a UTF-8 JSONL file.
+ *
+ * Lazy: nothing is read until iteration starts, and the file is closed when
+ * iteration finishes or the consumer stops early.
+ */
+export function* readLines(path) {
+    let fd;
+    try {
+        fd = openSync(path, "r");
+    }
+    catch {
+        return; // a missing file is an empty graph, never an error
+    }
+    const buf = Buffer.allocUnsafe(CHUNK);
+    // A multi-byte character can straddle a chunk edge, and a plain
+    // buf.toString() would replace the split halves with U+FFFD — silently
+    // corrupting any non-ASCII identifier or summary. StringDecoder holds the
+    // incomplete sequence back until the next chunk completes it.
+    const decoder = new StringDecoder("utf8");
+    let carry = "";
+    try {
+        for (;;) {
+            const bytes = readSync(fd, buf, 0, CHUNK, null);
+            if (bytes === 0)
+                break;
+            carry += decoder.write(buf.subarray(0, bytes));
+            let nl = carry.indexOf("\n");
+            while (nl !== -1) {
+                const line = carry.slice(0, nl);
+                carry = carry.slice(nl + 1);
+                if (line.trim() !== "")
+                    yield line;
+                nl = carry.indexOf("\n");
+            }
+        }
+        carry += decoder.end();
+        if (carry.trim() !== "")
+            yield carry;
+    }
+    finally {
+        closeSync(fd);
+    }
+}
+//# sourceMappingURL=jsonlLines.js.map

package/dist/store/jsonlLines.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"jsonlLines.js","sourceRoot":"","sources":["../../src/store/jsonlLines.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AACxD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAEpD;8CAC8C;AAC9C,MAAM,KAAK,GAAG,EAAE,GAAG,IAAI,CAAC;AAExB;;;;;GAKG;AACH,MAAM,SAAS,CAAC,CAAC,SAAS,CAAC,IAAY;IACrC,IAAI,EAAU,CAAC;IACf,IAAI,CAAC;QACH,EAAE,GAAG,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IAC3B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,CAAC,mDAAmD;IAC7D,CAAC;IACD,MAAM,GAAG,GAAG,MAAM,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;IACtC,gEAAgE;IAChE,uEAAuE;IACvE,0EAA0E;IAC1E,8DAA8D;IAC9D,MAAM,OAAO,GAAG,IAAI,aAAa,CAAC,MAAM,CAAC,CAAC;IAC1C,IAAI,KAAK,GAAG,EAAE,CAAC;IACf,IAAI,CAAC;QACH,SAAS,CAAC;YACR,MAAM,KAAK,GAAG,QAAQ,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;YAChD,IAAI,KAAK,KAAK,CAAC;gBAAE,MAAM;YACvB,KAAK,IAAI,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC;YAC/C,IAAI,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YAC7B,OAAO,EAAE,KAAK,CAAC,CAAC,EAAE,CAAC;gBACjB,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;gBAChC,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;gBAC5B,IAAI,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE;oBAAE,MAAM,IAAI,CAAC;gBACnC,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YAC3B,CAAC;QACH,CAAC;QACD,KAAK,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;QACvB,IAAI,KAAK,CAAC,IAAI,EAAE,KAAK,EAAE;YAAE,MAAM,KAAK,CAAC;IACvC,CAAC;YAAS,CAAC;QACT,SAAS,CAAC,EAAE,CAAC,CAAC;IAChB,CAAC;AACH,CAAC"}

package/dist/store/repoSession.d.ts CHANGED Viewed

@@ -10,6 +10,9 @@ export interface RepoInfo {
     /** Cheap line counts (not full parses) — omitted where the file is absent. */
     nodes?: number;
     edges?: number;
+    /** True when git still TRACKS the derived graph here (pre-0.2.7 adopter —
+     *  REP-35). Omitted when clean, so existing consumers see no change. */
+    graph_tracked?: boolean;
 }
 export declare function describeRepo(path: string): RepoInfo;
 /** Every repo `list_repos` should report. Deliberately broader than
@@ -37,12 +40,28 @@ export declare class RepoSession {
     private readonly cwd;
     private readonly envRepoPath;
     private selectedPath;
+    /** Repo paths whose tracked-graph state this session has already probed —
+     *  warned or clean, either way we never probe (or repeat) again. */
+    private readonly graphWarned;
     constructor(opts: {
         cwd: string;
         envRepoPath: string | undefined;
     });
     /** Current resolution, honoring an active `select_repo` pick first. */
     resolve(): RepoResolution;
+    /** One-shot, once per repo per session: the tracked-graph warning for the
+     *  currently resolved repo, or undefined (clean repo, no repo, or already
+     *  taken). The instrumentation layer (instrumentTool.ts) appends it to the
+     *  first successful tool result — repeating it every call would spend the
+     *  context this feature exists to protect (REP-35).
+     *
+     *  `resolvedPath` is an optional override: `instrumentTool.ts` already
+     *  computes the call's resolution once via its ALS-memoized
+     *  `cachedResolve()` (see its "single resolution per call" invariant) and
+     *  passes that in, so this never triggers a second, unmemoized
+     *  `resolve()` walk for the same tool call. Omit it (as a standalone
+     *  caller would) to resolve directly. */
+    takeTrackedGraphWarning(resolvedPath?: string): string | undefined;
     /** Every candidate repo for this session — see `discoverRepoPaths`. Each
      *  entry is flagged `selected` for whichever one `resolve()` currently
      *  returns, so an agent can see the effect of a prior `select_repo` call. */