@reposkein/mcp 0.7.0 → 0.9.0

package/dist/embed/providers/voyage.js

@@ -21,8 +21,10 @@
 const VOYAGE_ENDPOINT = "https://api.voyageai.com/v1/embeddings";
 const DEFAULT_MODEL = "voyage-code-3";
 const DEFAULT_DIMS = 1024;
-/** Max texts per request (Voyage API limit). */
-const BATCH_SIZE = 1000;
+/** Max texts per request (Voyage API limit). Enforced by the shared batcher. */
+const MAX_BATCH_ITEMS = 1000;
+/** Max tokens per request (Voyage API limit). Enforced by the shared batcher. */
+const MAX_BATCH_TOKENS = 120000;
 /** Default embedding request timeout in ms. Override with REPOSKEIN_EMBED_TIMEOUT_MS. */
 const DEFAULT_TIMEOUT_MS = 30000;
 export class VoyageEmbeddingProvider {
@@ -59,62 +61,56 @@ export class VoyageEmbeddingProvider {
     id() { return this._id; }
     modelId() { return this._modelId; }
     dims() { return this._dims; }
-    async embed(texts, kind) {
+    limits() {
+        return { maxItems: MAX_BATCH_ITEMS, maxTokens: MAX_BATCH_TOKENS };
+    }
+    async embedBatch(texts, kind) {
         if (texts.length === 0)
             return [];
-        const results = [];
-        // Batch up to BATCH_SIZE texts per request
-        for (let i = 0; i < texts.length; i += BATCH_SIZE) {
-            const batch = texts.slice(i, i + BATCH_SIZE);
-            const body = {
-                input: batch,
-                model: this._modelId,
-                input_type: kind,
-            };
-            // Only send output_dimension when the user explicitly configured it.
-            // Voyage defaults to the model's native dimensionality when omitted.
-            if (this._dimsExplicit) {
-                body["output_dimension"] = this._dims;
-            }
-            const controller = new AbortController();
-            const timer = setTimeout(() => controller.abort(), this._timeoutMs);
-            let res;
-            try {
-                res = await fetch(VOYAGE_ENDPOINT, {
-                    method: "POST",
-                    headers: {
-                        "Content-Type": "application/json",
-                        "Authorization": `Bearer ${this._apiKey}`,
-                    },
-                    body: JSON.stringify(body),
-                    signal: controller.signal,
-                });
-            }
-            finally {
-                clearTimeout(timer);
-            }
-            if (!res.ok) {
-                const text = await res.text().catch(() => "(no body)");
-                throw new Error(`Voyage API error ${res.status}: ${text}`);
-            }
-            const contentType = res.headers.get("content-type") ?? "";
-            if (!contentType.includes("application/json")) {
-                const text = await res.text().catch(() => "(unreadable body)");
-                throw new Error(`Voyage API returned non-JSON response (${contentType}): ${text.slice(0, 200)}`);
-            }
-            const json = (await res.json());
-            if (!Array.isArray(json.embeddings)) {
-                throw new Error(`Voyage API response missing embeddings array: ${JSON.stringify(json)}`);
-            }
-            if (json.embeddings.length !== batch.length) {
-                throw new Error(`Voyage API returned ${json.embeddings.length} embeddings for batch of ${batch.length} texts — batch count mismatch`);
-            }
-            results.push(...json.embeddings);
+        const body = {
+            input: texts,
+            model: this._modelId,
+            input_type: kind,
+        };
+        // Only send output_dimension when the user explicitly configured it.
+        // Voyage defaults to the model's native dimensionality when omitted.
+        if (this._dimsExplicit) {
+            body["output_dimension"] = this._dims;
+        }
+        const controller = new AbortController();
+        const timer = setTimeout(() => controller.abort(), this._timeoutMs);
+        let res;
+        try {
+            res = await fetch(VOYAGE_ENDPOINT, {
+                method: "POST",
+                headers: {
+                    "Content-Type": "application/json",
+                    "Authorization": `Bearer ${this._apiKey}`,
+                },
+                body: JSON.stringify(body),
+                signal: controller.signal,
+            });
+        }
+        finally {
+            clearTimeout(timer);
+        }
+        if (!res.ok) {
+            const text = await res.text().catch(() => "(no body)");
+            throw new Error(`Voyage API error ${res.status}: ${text}`);
+        }
+        const contentType = res.headers.get("content-type") ?? "";
+        if (!contentType.includes("application/json")) {
+            const text = await res.text().catch(() => "(unreadable body)");
+            throw new Error(`Voyage API returned non-JSON response (${contentType}): ${text.slice(0, 200)}`);
+        }
+        const json = (await res.json());
+        if (!Array.isArray(json.embeddings)) {
+            throw new Error(`Voyage API response missing embeddings array: ${JSON.stringify(json)}`);
         }
-        if (results.length !== texts.length) {
-            throw new Error(`Voyage API returned ${results.length} total embeddings for ${texts.length} input texts — total count mismatch`);
+        if (json.embeddings.length !== texts.length) {
+            throw new Error(`Voyage API returned ${json.embeddings.length} embeddings for batch of ${texts.length} texts — batch count mismatch`);
         }
-        return results;
+        return json.embeddings;
     }
 }
 //# sourceMappingURL=voyage.js.map

package/dist/embed/providers/voyage.js.map

@@ -1 +1 @@
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package/dist/embed/vectorStore.d.ts

@@ -0,0 +1,89 @@
+/**
+ * Fixed-stride binary vector store for the optional hybrid `semantic_find` tier.
+ *
+ * Two files beside each other under `.reposkein/local/embeddings/` — gitignored,
+ * never committed, never required:
+ *
+ *   <name>.vec        dims * 4 bytes per slot, little-endian float32
+ *   <name>.idx.jsonl  one {id, doc_hash} per line; the line number IS the slot
+ *
+ * Both are append-only in the steady state, which is what lets an interrupted
+ * cold run resume: an OOM-kill does not unwind the stack, so anything that only
+ * persisted at the end would persist nothing.
+ *
+ * ## Why not the JSON cache this replaces
+ *
+ * It stored vectors as JSON text — 21,865 bytes per 1024-dim vector against
+ * 4,096 for the floats — and handed them back as `number[]`, 8,252 bytes each
+ * and all of it ON the V8 heap, whose limit in this process is about 4.19 GB.
+ * At 200k nodes that was ~6 GB to load and ~14.8 GB to save; it OOMed around
+ * 140k. And because ranking lived in the caller, every query re-read the lot.
+ *
+ * A `Float32Array` view over a `Buffer` is 4 bytes per dimension and lives
+ * OUTSIDE the heap limit, so the change is worth roughly 10x of headroom rather
+ * than 2x. Ranking moved in here for the same reason: `topK` allocates k
+ * results, not one object per corpus node.
+ */
+export interface VectorRecord {
+    id: string;
+    /** Hash of the document string this vector was built from (invalidation key). */
+    docHash: string;
+    vector: number[] | Float32Array;
+}
+export interface ScoredId {
+    id: string;
+    score: number;
+}
+export interface VectorStorePaths {
+    vectors: string;
+    index: string;
+}
+/** The two files for a store, given its base path (no extension). */
+export declare function vectorStorePaths(base: string): VectorStorePaths;
+export declare class VectorStore {
+    private readonly paths;
+    private readonly dims;
+    /** id -> slot. Small: two short strings and a number per embedded node. */
+    private readonly slots;
+    /** Every vector, contiguous, off-heap. */
+    private buf;
+    /** Cached L2 norms, one float per slot — computed at load, not per query. */
+    private norms;
+    /** Slots appended since the last flush, still only in `buf`. */
+    private pending;
+    constructor(base: string, dims: number);
+    get size(): number;
+    private stride;
+    private load;
+    private recomputeNorms;
+    /** A view, not a copy: no per-call allocation of the vector itself. */
+    private vectorAt;
+    get(id: string): Float32Array | undefined;
+    docHash(id: string): string | undefined;
+    /** Add or replace vectors. Held in memory until `flush`. */
+    upsertMany(records: VectorRecord[]): void;
+    /** Append everything since the last flush. Best-effort: a failed flush costs
+     *  re-embedding, never correctness. */
+    flush(): void;
+    /**
+     * The k most similar ids by cosine, best first.
+     *
+     * Ranking lives here rather than in the caller so that the caller never has
+     * to hold the corpus: this allocates k results, not one object per node.
+     * `candidates`, when given, restricts scoring to that set.
+     */
+    topK(query: number[] | Float32Array, k: number, candidates?: Set<string>): ScoredId[];
+    /**
+     * Rewrite both files with one slot per live id.
+     *
+     * Appending means a re-embedded node leaves its old slot behind. Worth doing
+     * when the dead weight is material; pointless otherwise.
+     */
+    compact(): void;
+    /** How much of the file is dead slots, 0..1. */
+    wastedFraction(): number;
+}
+export declare function openVectorStore(base: string, dims: number): VectorStore;
+/** Remove a legacy JSON vector cache, which the binary store supersedes.
+ *  At 200k nodes that file was over 4 GB; leaving it costs real disk. */
+export declare function removeLegacyJsonCache(base: string): void;

package/dist/embed/vectorStore.js

@@ -0,0 +1,267 @@
+/**
+ * Fixed-stride binary vector store for the optional hybrid `semantic_find` tier.
+ *
+ * Two files beside each other under `.reposkein/local/embeddings/` — gitignored,
+ * never committed, never required:
+ *
+ *   <name>.vec        dims * 4 bytes per slot, little-endian float32
+ *   <name>.idx.jsonl  one {id, doc_hash} per line; the line number IS the slot
+ *
+ * Both are append-only in the steady state, which is what lets an interrupted
+ * cold run resume: an OOM-kill does not unwind the stack, so anything that only
+ * persisted at the end would persist nothing.
+ *
+ * ## Why not the JSON cache this replaces
+ *
+ * It stored vectors as JSON text — 21,865 bytes per 1024-dim vector against
+ * 4,096 for the floats — and handed them back as `number[]`, 8,252 bytes each
+ * and all of it ON the V8 heap, whose limit in this process is about 4.19 GB.
+ * At 200k nodes that was ~6 GB to load and ~14.8 GB to save; it OOMed around
+ * 140k. And because ranking lived in the caller, every query re-read the lot.
+ *
+ * A `Float32Array` view over a `Buffer` is 4 bytes per dimension and lives
+ * OUTSIDE the heap limit, so the change is worth roughly 10x of headroom rather
+ * than 2x. Ranking moved in here for the same reason: `topK` allocates k
+ * results, not one object per corpus node.
+ */
+import { appendFileSync, existsSync, mkdirSync, readFileSync, renameSync, statSync, unlinkSync, writeFileSync, } from "node:fs";
+import { dirname } from "node:path";
+/** The two files for a store, given its base path (no extension). */
+export function vectorStorePaths(base) {
+    return { vectors: `${base}.vec`, index: `${base}.idx.jsonl` };
+}
+export class VectorStore {
+    paths;
+    dims;
+    /** id -> slot. Small: two short strings and a number per embedded node. */
+    slots = new Map();
+    /** Every vector, contiguous, off-heap. */
+    buf;
+    /** Cached L2 norms, one float per slot — computed at load, not per query. */
+    norms;
+    /** Slots appended since the last flush, still only in `buf`. */
+    pending = [];
+    constructor(base, dims) {
+        this.paths = vectorStorePaths(base);
+        this.dims = dims;
+        this.buf = Buffer.alloc(0);
+        this.norms = new Float64Array(0);
+        this.load();
+    }
+    get size() {
+        return this.slots.size;
+    }
+    stride() {
+        return this.dims * 4;
+    }
+    load() {
+        if (!existsSync(this.paths.index) || !existsSync(this.paths.vectors))
+            return;
+        let raw;
+        let indexText;
+        try {
+            raw = readFileSync(this.paths.vectors);
+            indexText = readFileSync(this.paths.index, "utf8");
+        }
+        catch {
+            return; // unreadable store is a cold start, never an error
+        }
+        // A store written at a different dimensionality is not a store we can read:
+        // the same bytes mean something else, and scoring them would be silently
+        // wrong. Treat it as absent so everything is re-embedded.
+        if (raw.length % this.stride() !== 0)
+            return;
+        const capacity = raw.length / this.stride();
+        let slot = 0;
+        for (const line of indexText.split("\n")) {
+            if (line.trim() === "")
+                continue;
+            let parsed;
+            try {
+                parsed = JSON.parse(line);
+            }
+            catch {
+                continue; // a torn or malformed line costs one re-embed, not the query
+            }
+            const o = parsed;
+            const id = o["id"];
+            const docHash = o["doc_hash"];
+            if (typeof id !== "string" || typeof docHash !== "string")
+                continue;
+            // An index row with no vector behind it is a torn write: the line landed,
+            // the bytes did not.
+            if (slot >= capacity)
+                break;
+            // Last write for an id wins, exactly as the append-only file implies.
+            this.slots.set(id, { slot, docHash });
+            slot++;
+        }
+        this.buf = raw;
+        this.recomputeNorms(capacity);
+    }
+    recomputeNorms(capacity) {
+        this.norms = new Float64Array(capacity);
+        for (let s = 0; s < capacity; s++) {
+            const v = this.vectorAt(s);
+            let sum = 0;
+            for (let i = 0; i < this.dims; i++)
+                sum += v[i] * v[i];
+            this.norms[s] = Math.sqrt(sum);
+        }
+    }
+    /** A view, not a copy: no per-call allocation of the vector itself. */
+    vectorAt(slot) {
+        const start = slot * this.stride();
+        return new Float32Array(this.buf.buffer, this.buf.byteOffset + start, this.dims);
+    }
+    get(id) {
+        const s = this.slots.get(id);
+        return s === undefined ? undefined : this.vectorAt(s.slot);
+    }
+    docHash(id) {
+        return this.slots.get(id)?.docHash;
+    }
+    /** Add or replace vectors. Held in memory until `flush`. */
+    upsertMany(records) {
+        if (records.length === 0)
+            return;
+        const chunks = [this.buf];
+        let slot = this.buf.length / this.stride();
+        for (const r of records) {
+            const b = Buffer.allocUnsafe(this.stride());
+            for (let i = 0; i < this.dims; i++)
+                b.writeFloatLE(Number(r.vector[i] ?? 0), i * 4);
+            chunks.push(b);
+            this.slots.set(r.id, { slot, docHash: r.docHash });
+            this.pending.push({ id: r.id, docHash: r.docHash });
+            slot++;
+        }
+        this.buf = Buffer.concat(chunks);
+        this.recomputeNorms(this.buf.length / this.stride());
+    }
+    /** Append everything since the last flush. Best-effort: a failed flush costs
+     *  re-embedding, never correctness. */
+    flush() {
+        if (this.pending.length === 0)
+            return;
+        const pending = this.pending;
+        this.pending = [];
+        try {
+            mkdirSync(dirname(this.paths.vectors), { recursive: true });
+            const start = (this.buf.length / this.stride() - pending.length) * this.stride();
+            appendFileSync(this.paths.vectors, this.buf.subarray(start));
+            appendFileSync(this.paths.index, pending.map((p) => JSON.stringify({ id: p.id, doc_hash: p.docHash })).join("\n") + "\n");
+        }
+        catch {
+            // best-effort
+        }
+    }
+    /**
+     * The k most similar ids by cosine, best first.
+     *
+     * Ranking lives here rather than in the caller so that the caller never has
+     * to hold the corpus: this allocates k results, not one object per node.
+     * `candidates`, when given, restricts scoring to that set.
+     */
+    topK(query, k, candidates) {
+        if (k <= 0 || this.slots.size === 0)
+            return [];
+        let qNorm = 0;
+        for (let i = 0; i < this.dims; i++)
+            qNorm += Number(query[i] ?? 0) ** 2;
+        qNorm = Math.sqrt(qNorm);
+        if (qNorm === 0)
+            return [];
+        // A bounded insertion list: k is small (tens), so this beats a heap in
+        // practice and keeps the allocation proportional to k.
+        const best = [];
+        for (const [id, { slot }] of this.slots) {
+            if (candidates !== undefined && !candidates.has(id))
+                continue;
+            const norm = this.norms[slot];
+            if (norm === 0)
+                continue; // a zero vector has no direction to compare
+            const v = this.vectorAt(slot);
+            let dot = 0;
+            for (let i = 0; i < this.dims; i++)
+                dot += v[i] * Number(query[i] ?? 0);
+            const score = dot / (norm * qNorm);
+            if (best.length < k) {
+                best.push({ id, score });
+                best.sort(byScoreThenId);
+            }
+            else if (score > best[best.length - 1].score) {
+                best[best.length - 1] = { id, score };
+                best.sort(byScoreThenId);
+            }
+        }
+        return best;
+    }
+    /**
+     * Rewrite both files with one slot per live id.
+     *
+     * Appending means a re-embedded node leaves its old slot behind. Worth doing
+     * when the dead weight is material; pointless otherwise.
+     */
+    compact() {
+        const live = [...this.slots.entries()];
+        const capacity = this.buf.length / this.stride();
+        if (live.length === capacity)
+            return;
+        try {
+            mkdirSync(dirname(this.paths.vectors), { recursive: true });
+            const out = Buffer.allocUnsafe(live.length * this.stride());
+            const lines = [];
+            live.forEach(([id, s], i) => {
+                this.buf.copy(out, i * this.stride(), s.slot * this.stride(), (s.slot + 1) * this.stride());
+                lines.push(JSON.stringify({ id, doc_hash: s.docHash }));
+            });
+            // Unique per process: concurrent compactions must not rename through a
+            // shared temp path, where the loser would publish a stale snapshot.
+            const uniq = `${process.pid}.${Math.random().toString(36).slice(2, 10)}`;
+            const tmpVec = `${this.paths.vectors}.${uniq}.tmp`;
+            const tmpIdx = `${this.paths.index}.${uniq}.tmp`;
+            writeFileSync(tmpVec, out);
+            writeFileSync(tmpIdx, lines.length ? lines.join("\n") + "\n" : "");
+            renameSync(tmpVec, this.paths.vectors);
+            renameSync(tmpIdx, this.paths.index);
+            this.buf = out;
+            live.forEach(([id, s], i) => this.slots.set(id, { slot: i, docHash: s.docHash }));
+            this.recomputeNorms(live.length);
+        }
+        catch {
+            // best-effort; a failed compaction leaves a correct, larger store
+        }
+    }
+    /** How much of the file is dead slots, 0..1. */
+    wastedFraction() {
+        const capacity = this.buf.length / this.stride();
+        if (capacity === 0)
+            return 0;
+        return (capacity - this.slots.size) / capacity;
+    }
+}
+/** Descending score, ties broken by ascending id.
+ *  Ranking feeds a tool result, so equal scores must not reorder run to run. */
+function byScoreThenId(a, b) {
+    const d = b.score - a.score;
+    if (d !== 0)
+        return d;
+    return a.id < b.id ? -1 : a.id > b.id ? 1 : 0;
+}
+export function openVectorStore(base, dims) {
+    return new VectorStore(base, dims);
+}
+/** Remove a legacy JSON vector cache, which the binary store supersedes.
+ *  At 200k nodes that file was over 4 GB; leaving it costs real disk. */
+export function removeLegacyJsonCache(base) {
+    const legacy = `${base}.jsonl`;
+    try {
+        if (existsSync(legacy) && statSync(legacy).isFile())
+            unlinkSync(legacy);
+    }
+    catch {
+        // best-effort
+    }
+}
+//# sourceMappingURL=vectorStore.js.map

package/dist/embed/vectorStore.js.map

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package/dist/guard/caps.d.ts

@@ -2,6 +2,9 @@ export interface CapResult {
     rows: unknown[];
     truncated: boolean;
 }
+/** The row cap for tool results. Exported so callers can ask the store to
+ *  stop streaming there instead of capping after the fact. */
+export declare const MAX_ROWS = 200;
 /** Bounds a result set to at most `maxRows` and `maxBytes` of serialized JSON
  *  (PRD §7.2 / §3.7 layer 3). Sets `truncated` when anything was dropped. */
 export declare function applyCaps(rows: unknown[], maxRows?: number, maxBytes?: number): CapResult;

package/dist/guard/caps.js

@@ -1,6 +1,9 @@
+/** The row cap for tool results. Exported so callers can ask the store to
+ *  stop streaming there instead of capping after the fact. */
+export const MAX_ROWS = 200;
 /** Bounds a result set to at most `maxRows` and `maxBytes` of serialized JSON
  *  (PRD §7.2 / §3.7 layer 3). Sets `truncated` when anything was dropped. */
-export function applyCaps(rows, maxRows = 200, maxBytes = 64 * 1024) {
+export function applyCaps(rows, maxRows = MAX_ROWS, maxBytes = 64 * 1024) {
     const out = [];
     let bytes = 0;
     let truncated = false;

package/dist/guard/caps.js.map

@@ -1 +1 @@
-{"version":3,"file":"caps.js","sourceRoot":"","sources":["../../src/guard/caps.ts"],"names":[],"mappings":"AAKA;6EAC6E;AAC7E,MAAM,UAAU,SAAS,CACvB,IAAe,EACf,OAAO,GAAG,GAAG,EACb,QAAQ,GAAG,EAAE,GAAG,IAAI;IAEpB,MAAM,GAAG,GAAc,EAAE,CAAC;IAC1B,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,IAAI,SAAS,GAAG,KAAK,CAAC;IACtB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACrC,IAAI,GAAG,CAAC,MAAM,IAAI,OAAO,EAAE,CAAC;YAC1B,SAAS,GAAG,IAAI,CAAC;YACjB,MAAM;QACR,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,MAAM,CAAC,CAAC;QACtE,IAAI,KAAK,GAAG,IAAI,GAAG,QAAQ,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC9C,SAAS,GAAG,IAAI,CAAC;YACjB,MAAM;QACR,CAAC;QACD,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;QAClB,KAAK,IAAI,IAAI,CAAC;IAChB,CAAC;IACD,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC;AAClC,CAAC"}
+{"version":3,"file":"caps.js","sourceRoot":"","sources":["../../src/guard/caps.ts"],"names":[],"mappings":"AAKA;8DAC8D;AAC9D,MAAM,CAAC,MAAM,QAAQ,GAAG,GAAG,CAAC;AAE5B;6EAC6E;AAC7E,MAAM,UAAU,SAAS,CACvB,IAAe,EACf,OAAO,GAAG,QAAQ,EAClB,QAAQ,GAAG,EAAE,GAAG,IAAI;IAEpB,MAAM,GAAG,GAAc,EAAE,CAAC;IAC1B,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,IAAI,SAAS,GAAG,KAAK,CAAC;IACtB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACrC,IAAI,GAAG,CAAC,MAAM,IAAI,OAAO,EAAE,CAAC;YAC1B,SAAS,GAAG,IAAI,CAAC;YACjB,MAAM;QACR,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,MAAM,CAAC,CAAC;QACtE,IAAI,KAAK,GAAG,IAAI,GAAG,QAAQ,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC9C,SAAS,GAAG,IAAI,CAAC;YACjB,MAAM;QACR,CAAC;QACD,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;QAClB,KAAK,IAAI,IAAI,CAAC;IAChB,CAAC;IACD,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC;AAClC,CAAC"}

package/dist/index.js

@@ -3,6 +3,7 @@ import { pathToFileURL } from "node:url";
 import { runInit, runIndex } from "./cli/init.js";
 import { parseAgentsFlag } from "./cli/agentAdapters.js";
 import { runDoctor, resolveDoctorRepoPath } from "./cli/doctor.js";
+import { runMigrate } from "./cli/migrate.js";
 import { runAdr } from "./cli/adr.js";
 import { runAdrReanchor } from "./cli/adrReanchor.js";
 import { runView, runExport, parseViewArgs } from "./cli/view.js";
@@ -24,7 +25,8 @@ Usage:
   reposkein-mcp                 start the MCP server (stdio transport)
   reposkein-mcp init [path]     set up a repo (indexer, git hooks, skill, graph); --no-index skips the initial index, --ci also writes a GitHub Pages publish workflow (see docs/HOSTING.md). On a repo joined from a committed .reposkein/meta.json, also auto-writes local agent MCP config (--agents claude,opencode,cursor to override detection, --dry-run to preview)
   reposkein-mcp index [path]    (re)build the committed graph
-  reposkein-mcp doctor [path]   health check (indexer binary, index, repo id, hooks, graph freshness); --json for machine output, --ci additionally fails on stale graph / missing hooks / unsplit legacy summaries
+  reposkein-mcp doctor [path]   health check (indexer binary, index, repo id, hooks, graph freshness); --json for machine output, --ci additionally fails on stale graph / missing hooks / unsplit legacy summaries / a tracked derived graph (graph_tracked)
+  reposkein-mcp migrate [path] [--dry-run]  untrack a still-committed derived graph (pre-0.2.7 repos), refresh hooks + .gitignore/.gitattributes
   reposkein-mcp adr <sub> ...   decision-log utilities (export|import|reanchor)
   reposkein-mcp stats [path]    session usage report (calls, tokens saved vs grep)
   reposkein-mcp support <token> install a supporter token (verified locally, stored at ~/.config/reposkein/supporter.jwt, mode 600); pass \`-\` to read it from stdin instead of argv (keeps it out of shell history and \`ps\`); --status to show tier/expiry, --remove to delete it. Offline: no network call, ever
@@ -111,6 +113,19 @@ if (invokedAsBin()) {
             .then((code) => process.exit(code))
             .catch((err) => { console.error(err); process.exit(1); });
     }
+    else if (sub === "migrate") {
+        const rest = process.argv.slice(3);
+        const dryRun = rest.includes("--dry-run");
+        const explicitPath = rest.find((a) => !a.startsWith("-"));
+        const { path, error } = resolveDoctorRepoPath(explicitPath, process.cwd(), process.env.REPOSKEIN_REPO_PATH);
+        if (error) {
+            console.error(`reposkein migrate: ${error}`);
+            process.exit(1);
+        }
+        runMigrate(path, { dryRun })
+            .then((code) => process.exit(code))
+            .catch((err) => { console.error(err); process.exit(1); });
+    }
     else if (sub === "stats") {
         process.exit(runStats(process.argv.slice(3), process.cwd(), process.env.REPOSKEIN_REPO_PATH));
     }

package/dist/index.js.map

@@ -1 +1 @@
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