@rcsb/rcsb-saguaro-app 6.3.7-react-downgrade.1 → 6.3.8

package/lib/commonjs/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js

@@ -3,7 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.UnmodeledTrackBuilder = void 0;
 exports.addUnmodeledTrackBuilder = addUnmodeledTrackBuilder;
 const tslib_1 = require("tslib");
-const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
+const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
 const lodash_1 = require("lodash");
 const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
 const RcsbFvTooltip_1 = require("../../RcsbFvWeb/RcsbFvTooltip/RcsbFvTooltip");
@@ -47,10 +47,10 @@ class UnmodeledTrackBuilder {
             const nInstances = (yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getEntityProperties((_a = rcsbContext.entityId) !== null && _a !== void 0 ? _a : "none"))[0].instances.length;
             const featurePositions = Array.from(annotations.filter(ann => {
                 var _a, _b, _c;
-                return (_c = (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter(f => (f === null || f === void 0 ? void 0 : f.type) == GqlTypes_1.Type.UnobservedResidueXyz)) === null || _b === void 0 ? void 0 : _b.length) !== null && _c !== void 0 ? _c : 0 > 0;
+                return (_c = (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter(f => (f === null || f === void 0 ? void 0 : f.type) == GqlTypes_1.FeaturesType.UnobservedResidueXyz)) === null || _b === void 0 ? void 0 : _b.length) !== null && _c !== void 0 ? _c : 0 > 0;
             }).map(ann => {
                 var _a, _b;
-                return (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter((f) => (f === null || f === void 0 ? void 0 : f.type) == GqlTypes_1.Type.UnobservedResidueXyz)) !== null && _b !== void 0 ? _b : [];
+                return (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter((f) => (f === null || f === void 0 ? void 0 : f.type) == GqlTypes_1.FeaturesType.UnobservedResidueXyz)) !== null && _b !== void 0 ? _b : [];
             }).flat().map(feature => {
                 var _a, _b;
                 return (_b = (_a = feature.feature_positions) === null || _a === void 0 ? void 0 : _a.filter((p) => typeof p != "undefined")) !== null && _b !== void 0 ? _b : [];
@@ -62,7 +62,7 @@ class UnmodeledTrackBuilder {
                 };
             });
             return [{
-                    source: GqlTypes_1.Source.PdbEntity,
+                    source: GqlTypes_1.AnnotationReference.PdbEntity,
                     target_id: rcsbContext.entityId,
                     features: [{
                             type: UNMODELED,
@@ -99,7 +99,7 @@ class UnobservedToolTip {
 function filterUnobserved(annotations) {
     return annotations.map(ann => {
         var _a;
-        return Object.assign(Object.assign({}, ann), { features: (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter(f => (f === null || f === void 0 ? void 0 : f.type) != GqlTypes_1.Type.UnobservedResidueXyz && (f === null || f === void 0 ? void 0 : f.type) != GqlTypes_1.Type.UnobservedAtomXyz) });
+        return Object.assign(Object.assign({}, ann), { features: (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter(f => (f === null || f === void 0 ? void 0 : f.type) != GqlTypes_1.FeaturesType.UnobservedResidueXyz && (f === null || f === void 0 ? void 0 : f.type) != GqlTypes_1.FeaturesType.UnobservedAtomXyz) });
     });
 }
 const UNMODELED = "UNMODELED";

package/lib/commonjs/RcsbUtils/Translators/MultipleEntityInstanceTranslate.js

@@ -3,7 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.MultipleEntityInstanceTranslate = void 0;
 const PolymerEntityInstanceTranslate_1 = require("./PolymerEntityInstanceTranslate");
 const Operator_1 = require("../Helpers/Operator");
-const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
+const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
 class MultipleEntityInstanceTranslate {
     constructor() {
         this.entityInstanceTranslateMap = new Map();

package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.d.ts

@@ -1,11 +1,11 @@
 import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
 import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
-import { SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 export interface AlignmentContextInterface {
     queryId: string;
     targetId: string;
     from: SequenceReference | undefined;
-    to: SequenceReference | Source | undefined;
+    to: SequenceReference | AnnotationReference | undefined;
     targetSequenceLength?: number;
     querySequenceLength?: number;
 }

package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js

@@ -1,8 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.PolymerEntityInstanceTranslate = void 0;
-const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
-const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
+const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
+const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
 class PolymerEntityInstanceTranslate {
     constructor(data) {
         this.instanceAsymToAuth = new Map();
@@ -70,7 +70,7 @@ class PolymerEntityInstanceTranslate {
         const authResIds = this.instanceAuthResIds.get(asymId);
         if (!authResIds)
             return out;
-        if (reference === GqlTypes_1.SequenceReference.PdbInstance || (reference === GqlTypes_1.SequenceReference.PdbEntity && source === GqlTypes_1.Source.PdbInstance)) {
+        if (reference === GqlTypes_1.SequenceReference.PdbInstance || (reference === GqlTypes_1.SequenceReference.PdbEntity && source === GqlTypes_1.AnnotationReference.PdbInstance)) {
             const x = authResIds[e.begin - 1];
             if (typeof e.end === "number" && authResIds[e.end - 1] != x) {
                 out.beginName = x;
@@ -80,7 +80,7 @@ class PolymerEntityInstanceTranslate {
                 out.beginName = x;
             }
         }
-        else if (source === GqlTypes_1.Source.PdbInstance && e.oriBegin) {
+        else if (source === GqlTypes_1.AnnotationReference.PdbInstance && e.oriBegin) {
             const x = authResIds[e.oriBegin - 1];
             if (typeof e.oriEnd === "number" && authResIds[e.oriEnd - 1] != x) {
                 out.oriBeginName = x;

package/lib/constants.js

@@ -1 +1,2 @@
 export { SearchFacets } from "./RcsbSeacrh/FacetStore/SingleFacets";
+//# sourceMappingURL=constants.js.map

package/lib/constants.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,YAAY,EAAC,MAAM,sCAAsC,CAAC"}

package/lib/plot.js

@@ -1,2 +1,3 @@
 export { buildSearchRequest, buildGroup, buildGroupMembers, buildGroupContent, buildResidueDistribution, searchQueryContextManager } from "./RcsbGroupWeb/RcsbGroupBuilder";
 export { rcsbRequestCtxManager as RcsbRequestContextManager } from "./RcsbRequest/RcsbRequestContextManager";
+//# sourceMappingURL=plot.js.map

package/lib/plot.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"plot.js","sourceRoot":"","sources":["../src/plot.ts"],"names":[],"mappings":"AAAA,OAAO,EACH,kBAAkB,EAClB,UAAU,EACV,iBAAiB,EACjB,iBAAiB,EACjB,wBAAwB,EACxB,yBAAyB,EAC5B,MAAM,iCAAiC,CAAC;AAEzC,OAAO,EAAC,qBAAqB,IAAI,yBAAyB,EAAC,MAAM,yCAAyC,CAAC"}

package/lib/tsconfig.commonjs.tsbuildinfo

@@ -0,0 +1 @@
+{"root":["../src/app.ts","../src/constants.ts","../src/custom.d.ts","../src/plot.ts","../src/externalresources/ncbidata/ncbigenomesequencedata.ts","../src/externalresources/ncbidata/ncbisummary.ts","../src/rcsbannotationconfig/annotationconfiginterface.ts","../src/rcsbannotationconfig/rcsbannotationconfig.ts","../src/rcsbannotationconfig/rcsbannotationconstants.ts","../src/rcsbannotationconfig/rcsbdistributionconfig.ts","../src/rcsbchartweb/absractchartcomponent.tsx","../src/rcsbchartweb/barchartcomponent.tsx","../src/rcsbchartweb/histogramchartcomponent.tsx","../src/rcsbcollecttools/alignmentcollector/alignmentcollector.ts","../src/rcsbcollecttools/alignmentcollector/alignmentcollectorinterface.ts","../src/rcsbcollecttools/annotationcollector/annotationcollector.ts","../src/rcsbcollecttools/annotationcollector/annotationcollectorinterface.ts","../src/rcsbcollecttools/datacollectors/assemblyinterfacescollector.ts","../src/rcsbcollecttools/datacollectors/datacollectorinterface.ts","../src/rcsbcollecttools/datacollectors/entryassembliescollector.ts","../src/rcsbcollecttools/datacollectors/groupmembercollector.ts","../src/rcsbcollecttools/datacollectors/grouppropertycollector.ts","../src/rcsbcollecttools/datacollectors/interfaceinstancecollector.ts","../src/rcsbcollecttools/datacollectors/multipleentityinstancescollector.ts","../src/rcsbcollecttools/datacollectors/multipleentrypropertycollector.ts","../src/rcsbcollecttools/datacollectors/multipleinstancesequencescollector.ts","../src/rcsbcollecttools/datacollectors/multiplepolymerentitycollector.ts","../src/rcsbcollecttools/datacollectors/polymerentitychromosomecollector.ts","../src/rcsbcollecttools/datacollectors/polymerentityinstancescollector.ts","../src/rcsbcollecttools/featuretools/externaltrackbuilderinterface.ts","../src/rcsbcollecttools/featuretools/featuretools.ts","../src/rcsbexport/featuretype.ts","../src/rcsbexport/rcsbfvui.ts","../src/rcsbfvexamples/chromosomefv.ts","../src/rcsbfvexamples/entitysummaryfv.ts","../src/rcsbfvexamples/externaldataprovider.ts","../src/rcsbfvexamples/grouphistogram.ts","../src/rcsbfvexamples/instancefv.ts","../src/rcsbfvexamples/instancesequencefv.ts","../src/rcsbfvexamples/residuedistribution.ts","../src/rcsbfvexamples/sequenceidentitygroupalignmentfv.tsx","../src/rcsbfvexamples/sequenceidentitygroupfv.ts","../src/rcsbfvexamples/singleentitysummaryfv.ts","../src/rcsbfvexamples/testcollectors.ts","../src/rcsbfvexamples/uniprotalignmentfv.ts","../src/rcsbfvexamples/uniprotentityinstancefv.ts","../src/rcsbfvexamples/uniprotfv.ts","../src/rcsbfvexamples/uniprotgroupfv.ts","../src/rcsbfvexamples/utils/events.ts","../src/rcsbfvui/abstractmenuitemcomponent.tsx","../src/rcsbfvui/grouppfvui.tsx","../src/rcsbfvui/components/filteritemcomponent.tsx","../src/rcsbfvui/components/itemcomponent.tsx","../src/rcsbfvui/components/paginationitemcomponent.tsx","../src/rcsbfvui/helper/actionmethods.ts","../src/rcsbfvweb/rcsbfvbuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvassemblybuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvchromosomebuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvcontextmanager.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvcorebuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvdataproviderbuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfventitybuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvgroupalignmentbuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvgroupbuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvinstancebuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvpairwisealigmentbuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvproteinsequencebuilder.ts","../src/rcsbfvweb/rcsbfvbuilder/rcsbfvuniprotbuilder.ts","../src/rcsbfvweb/rcsbfvcomponents/componentsmanager.tsx","../src/rcsbfvweb/rcsbfvcomponents/loaderspinner.tsx","../src/rcsbfvweb/rcsbfvcomponents/mountablecomponent.ts","../src/rcsbfvweb/rcsbfvcomponents/rcsbtabs.tsx","../src/rcsbfvweb/rcsbfvcomponents/selectbutton.tsx","../src/rcsbfvweb/rcsbfvcomponents/selectbuttonmanager.tsx","../src/rcsbfvweb/rcsbfvcomponents/selectbuttontitle.tsx","../src/rcsbfvweb/rcsbfvfactories/rcsbfvblockfactory/alignmentblockfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvblockfactory/annotationsblockfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvblockfactory/blockfactoryinterface.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvblockfactory/blockmanager/annotationblockmanager.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvblockfactory/blockmanager/annotationtrackmanager.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvblockfactory/blockmanager/blockmanagerinterface.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvblockfactory/blockmanager/trackmanagerinterface.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/rcsbfvtrackdataannotationinterface.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryinterface.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/tracktitlefactoryinterface.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/alignmenttrackfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/annotationstrackfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/msaalignmenttrackfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/plainalignmenttrackfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/plainobservedalignmenttrackfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/positionalscorealignmenttrackfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/sequencetrackfactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/trackfactoryimpl/helper/trackutils.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/tracktitlefactoryimpl/alignmenttracktitlefactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/tracktitlefactoryimpl/annotationstracktitlefactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/tracktitlefactoryimpl/experimentalalignmenttracktitlefactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/tracktitlefactoryimpl/instancesequencetracktitlefactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/tracktitlefactoryimpl/modelalignmenttracktitlefactory.ts","../src/rcsbfvweb/rcsbfvfactories/rcsbfvtrackfactory/tracktitlefactoryimpl/sequencetracktitlefactory.ts","../src/rcsbfvweb/rcsbfvgroup/grouppfvtabs.tsx","../src/rcsbfvweb/rcsbfvgroup/rcsbfvgrouptabsbuilder.tsx","../src/rcsbfvweb/rcsbfvgroup/grouptabs/grouppfvapp.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvabstractmodule.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvchromosome.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvdataprovider.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfventity.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvgroupalignment.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvgroupannotation.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvinstance.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvinterface.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvmoduleinterface.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvpairwisealignment.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvproteinsequence.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvuniprot.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvuniprotalignment.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvuniprotentity.ts","../src/rcsbfvweb/rcsbfvmodule/rcsbfvuniprotinstance.ts","../src/rcsbfvweb/rcsbfvtooltip/rcsbfvtooltip.ts","../src/rcsbfvweb/rcsbfvworkers/rcsbfvalignmentcollectorqueue.ts","../src/rcsbfvweb/rcsbfvworkers/rcsbfvalignmentcollectorworker.worker.ts","../src/rcsbgraphql/rcsbclient.ts","../src/rcsbgraphql/rcsbcorequeryinterface.ts","../src/rcsbgraphql/rcsbqueryalignment.ts","../src/rcsbgraphql/rcsbqueryannotations.ts","../src/rcsbgraphql/rcsbqueryassemblyinterfaces.ts","../src/rcsbgraphql/rcsbqueryentryinstances.ts","../src/rcsbgraphql/rcsbquerygroup.ts","../src/rcsbgraphql/rcsbqueryinterfaceinstances.ts","../src/rcsbgraphql/rcsbquerymultipleentityinstances.ts","../src/rcsbgraphql/rcsbquerymultipleentriesproperties.ts","../src/rcsbgraphql/rcsbquerymultipleinstancesequences.ts","../src/rcsbgroupweb/rcsbgroupbuilder.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupdisplay.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupchart/groupchartadditionalproperties.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupchart/groupchartevents.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupchart/groupchartlayout.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupchart/groupcharttools.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupchart/rcsbgroupchartcomponent.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupchart/rcsbstatschartcomponent.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupcontent/rcsbgroupcontentcomponent.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupmembers/groupmemberitem.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupmembers/groupmembersgrid.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupmembers/rcsbgroupmemberscomponent.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupmembers/components/slider.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupseacrhquery/rcsbgroupseacrhquerycomponent.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbgroupseacrhquery/searchquerycontextmanager.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/rcsbresiduechartcomponent.tsx","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuechartfactories/residuedistributionfactoryinterface.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuechartfactories/distributionchartfactoryimpl/distributionchartfactory.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuechartfactories/residuedistributionfactoryimpl/multipletrackdistributionfactory.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuechartfactories/residuedistributionfactoryimpl/numericaltrackdistributionfactory.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuechartfactories/residuedistributionfactoryimpl/trackdistributionfactory.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuechartfactories/trackblockfactoryimpl/trackblockfactory.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuecharttools/helper.ts","../src/rcsbgroupweb/rcsbgroupview/rcsbresiduechart/residuecharttools/residuecharttools.ts","../src/rcsbqueries/querycheck.ts","../src/rcsbrequest/rcsbrequestclient.ts","../src/rcsbrequest/rcsbrequestcontextmanager.ts","../src/rcsbrequest/rcsbrequesttools.ts","../src/rcsbseacrh/facettools.ts","../src/rcsbseacrh/searchquerytools.ts","../src/rcsbseacrh/searchrequestproperty.ts","../src/rcsbseacrh/facetstore/depositiongroupfacetstore.ts","../src/rcsbseacrh/facetstore/entitygranularitysearchfacetstore.ts","../src/rcsbseacrh/facetstore/facetmemberinterface.ts","../src/rcsbseacrh/facetstore/facetstoreinterface.ts","../src/rcsbseacrh/facetstore/sequencegroupfacetstore.ts","../src/rcsbseacrh/facetstore/singlefacets.ts","../src/rcsbseacrh/facetstore/uniprotgroupfacetstore.ts","../src/rcsbserverconfig/serverconfig.ts","../src/rcsbutils/groups/groupgaplesstransformer.ts","../src/rcsbutils/groups/grouppropertiesprovider.ts","../src/rcsbutils/groups/groupprovenancetoaggregationtype.ts","../src/rcsbutils/helpers/assertions.ts","../src/rcsbutils/helpers/datacontainer.ts","../src/rcsbutils/helpers/observablehelper.ts","../src/rcsbutils/helpers/operator.ts","../src/rcsbutils/helpers/singletonmap.ts","../src/rcsbutils/helpers/urltools.ts","../src/rcsbutils/pairwisealignmenttools/alignmentreference.ts","../src/rcsbutils/pairwisealignmenttools/pairwisealignmentbuilder.ts","../src/rcsbutils/trackgenerators/alignmentglobalbindingsite.ts","../src/rcsbutils/trackgenerators/burialfraction.ts","../src/rcsbutils/trackgenerators/buriedresidues.ts","../src/rcsbutils/trackgenerators/groupexternaltrackbuilder.ts","../src/rcsbutils/trackgenerators/logo.ts","../src/rcsbutils/trackgenerators/unmodeledtrackbuilder.ts","../src/rcsbutils/translators/assemblyinterfacestranslate.ts","../src/rcsbutils/translators/entryassemblytranslate.ts","../src/rcsbutils/translators/interfaceinstancetranslate.ts","../src/rcsbutils/translators/multipleentityinstancetranslate.ts","../src/rcsbutils/translators/polymerentitychromosometranslate.ts","../src/rcsbutils/translators/polymerentityinstancetranslate.ts"],"version":"5.8.2"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@rcsb/rcsb-saguaro-app",
-  "version": "6.3.7-react-downgrade.1",
+  "version": "6.3.8",
   "description": "RCSB 1D Saguaro Web App",
   "main": "build/app.js",
   "files": [
@@ -10,7 +10,7 @@
   "scripts": {
     "devServer": "webpack-dev-server --config webpack.server.dev.config.js",
     "buildAll": "npm run buildApp && npm run buildAllDoc",
-    "buildOnlyApp": "npm run build-tsc && npm run build-commonjs && npm run copyQueries && npm run copyCss && npm run build && npm run copyConfig",
+    "buildOnlyApp": "npm run build-tsc && npm run build-commonjs && npm run copyQueries && npm run copyCss && npm run copyIcons && npm run build && npm run copyConfig",
     "buildApp": "npm run clean && npm run checkQueries && npm run buildOnlyApp",
     "buildAppDev": "npm run clean && npm run checkQueries && npm run buildDev",
     "build": "webpack --config ./webpack.config.js",
@@ -20,6 +20,7 @@
     "copyYosemiteQueries": "ncp src/RcsbQueries/Yosemite lib/RcsbQueries/Yosemite && ncp src/RcsbQueries/Yosemite lib/commonjs/RcsbQueries/Yosemite",
     "copyConfig": "ncp lib/commonjs/RcsbServerConfig/ServerConfig.js build/config.js",
     "copyCss": "ncp src/scss lib/scss && ncp src/scss lib/commonjs/scss",
+    "copyIcons": "ncp src/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/icons lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/icons && ncp src/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/icons lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/icons",
     "build-tsc": "tsc",
     "build-commonjs": "tsc --build tsconfig.commonjs.json",
     "clean": "del-cli lib && del-cli build",
@@ -50,61 +51,56 @@
   },
   "license": "MIT",
   "devDependencies": {
-    "@babel/core": "^7.25.2",
-    "@babel/plugin-proposal-class-properties": "^7.18.6",
-    "@babel/preset-env": "^7.25.3",
+    "@babel/core": "^7.26.10",
+    "@babel/preset-env": "^7.26.9",
     "@svgr/webpack": "^8.1.0",
-    "@types/lodash": "^4.17.7",
+    "@types/lodash": "^4.17.16",
     "@types/lodash.range": "^3.2.9",
     "@types/object-hash": "^3.0.6",
-    "@types/react": "^18.3.4",
-    "@types/react-dom": "^18.3.0",
+    "@types/react": "^19.0.12",
+    "@types/react-dom": "^19.0.4",
     "@types/uniqid": "^5.3.4",
-    "babel-loader": "^9.1.3",
+    "babel-loader": "^10.0.0",
     "bootstrap": "^5.3.3",
     "buffer": "^6.0.3",
-    "crypto-browserify": "^3.12.0",
+    "crypto-browserify": "^3.12.1",
     "css-loader": "^7.1.2",
-    "del-cli": "^5.1.0",
-    "graphql-request": "^6.1.0",
-    "html-webpack-plugin": "^5.6.0",
+    "del-cli": "^6.0.0",
+    "html-webpack-plugin": "^5.6.3",
     "lodash": "^4.17.21",
     "ncp": "^2.0.0",
     "object-hash": "^3.0.0",
     "path-browserify": "^1.0.1",
     "raw-loader": "^4.0.2",
     "react-draggable": "^4.4.6",
-    "sass": "^1.77.8",
-    "sass-loader": "^16.0.1",
+    "sass": "^1.86.0",
+    "sass-loader": "^16.0.5",
     "stream-browserify": "^3.0.0",
     "style-loader": "^4.0.0",
-    "ts-loader": "^9.5.1",
+    "ts-loader": "^9.5.2",
     "ts-node": "^10.9.2",
-    "typedoc": "^0.26.6",
-    "typedoc-plugin-missing-exports": "^3.0.0",
-    "typedoc-theme-hierarchy": "^5.0.3",
-    "typescript": "^5.5.4",
+    "typedoc": "^0.27.9",
+    "typedoc-plugin-missing-exports": "^3.1.0",
+    "typedoc-theme-hierarchy": "^5.0.4",
+    "typescript": "^5.8.2",
     "uniqid": "^5.4.0",
-    "webpack": "^5.93.0",
-    "webpack-cli": "^5.1.4",
-    "webpack-dev-server": "^5.0.4",
+    "webpack": "^5.98.0",
+    "webpack-cli": "^6.0.1",
+    "webpack-dev-server": "^5.2.0",
     "worker-loader": "^3.0.8"
   },
   "dependencies": {
-    "@rcsb/rcsb-charts": "^0.2.24",
-    "@rcsb/rcsb-saguaro": "^3.1.6-react-downgrade.1",
-    "@rcsb/rcsb-search-tools": "^0.0.14",
-    "ideogram": "^1.47.0",
-    "react-bootstrap": "^2.10.4",
-    "react-select": "^5.8.0",
-    "rxjs": "^7.8.1",
-    "string-to-color": "^2.2.2"
-  },
-  "peerDependencies": {
-    "@rcsb/rcsb-api-tools": "^4.3.0",
-    "boxicons": "^2.1.4",
-    "react": "^18.3.1",
-    "react-dom": "^18.3.1"
+    "@rcsb/rcsb-charts": "^0.2.27",
+    "@rcsb/rcsb-saguaro": "^3.1.7",
+    "@rcsb/rcsb-search-tools": "^0.0.15",
+    "ideogram": "^1.50.0",
+    "react-bootstrap": "^2.10.9",
+    "react-select": "^5.10.1",
+    "rxjs": "^7.8.2",
+    "string-to-color": "^2.2.2",
+    "@rcsb/rcsb-api-tools": "^5.0.0",
+    "react": "^19.1.0",
+    "react-dom": "^19.1.0"
   },
   "bugs": {
     "url": "https://github.com/rcsb/rcsb-saguaro-app/issues"
@@ -114,4 +110,4 @@
     "doc": "docs",
     "example": "examples"
   }
-}
+}

package/lib/RcsbQueries/Borrego/.graphqlconfig

@@ -1,15 +0,0 @@
-{
-  "name": "Untitled GraphQL Schema",
-  "schemaPath": "schema.graphql",
-  "extensions": {
-    "endpoints": {
-      "Default GraphQL Endpoint": {
-        "url": "https://1d-coordinates.rcsb.org/graphql",
-        "headers": {
-          "user-agent": "JS GraphQL"
-        },
-        "introspect": false
-      }
-    }
-  }
-}

package/lib/commonjs/RcsbQueries/Borrego/.graphqlconfig

@@ -1,15 +0,0 @@
-{
-  "name": "Untitled GraphQL Schema",
-  "schemaPath": "schema.graphql",
-  "extensions": {
-    "endpoints": {
-      "Default GraphQL Endpoint": {
-        "url": "https://1d-coordinates.rcsb.org/graphql",
-        "headers": {
-          "user-agent": "JS GraphQL"
-        },
-        "introspect": false
-      }
-    }
-  }
-}