@rcsb/rcsb-saguaro-app 6.3.7-react-downgrade.1 → 6.3.8

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js

@@ -1,10 +1,10 @@
 import { __awaiter } from "tslib";
-import { SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { SequenceTrackTitleFactory } from "../TrackTitleFactoryImpl/SequenceTrackTitleFactory";
 import { TrackUtils } from "./Helper/TrackUtils";
 import { Assertions } from "../../../../RcsbUtils/Helpers/Assertions";
 var assertDefined = Assertions.assertDefined;
-import { TagDelimiter } from "@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter";
+import { TagDelimiter } from "@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter";
 export class SequenceTrackFactory {
     constructor(entityInstanceTranslator, trackTitleFactory) {
         this.entityInstanceTranslator = undefined;
@@ -17,7 +17,7 @@ export class SequenceTrackFactory {
             const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
             assertDefined(queryId);
             return {
-                trackId: (_b = "mainSequenceTrack_" + alignmentQueryContext.queryId) !== null && _b !== void 0 ? _b : alignmentQueryContext.groupId,
+                trackId: "mainSequenceTrack_" + ((_b = alignmentQueryContext.queryId) !== null && _b !== void 0 ? _b : alignmentQueryContext.groupId),
                 displayType: "sequence" /* RcsbFvDisplayTypes.SEQUENCE */,
                 trackColor: "#F9F9F9",
                 displayColor: "#000000",
@@ -75,3 +75,4 @@ export class SequenceTrackFactory {
         return o;
     }
 }
+//# sourceMappingURL=SequenceTrackFactory.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SequenceTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.ts"],"names":[],"mappings":";AAGA,OAAO,EAAC,iBAAiB,EAAC,MAAM,6DAA6D,CAAC;AAQ9F,OAAO,EAAC,yBAAyB,EAAC,MAAM,oDAAoD,CAAC;AAC7F,OAAO,EAAC,UAAU,EAAC,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAS7E,MAAM,OAAO,oBAAoB;IAK7B,YAAY,wBAAyD,EAAE,iBAA6E;QAHnI,6BAAwB,GAA+C,SAAS,CAAC;QAI9F,IAAI,CAAC,wBAAwB,GAAG,wBAAwB,CAAC;QACzD,IAAI,CAAC,iBAAiB,GAAG,iBAAiB,aAAjB,iBAAiB,cAAjB,iBAAiB,GAAI,IAAI,yBAAyB,CAAC,wBAAwB,CAAC,CAAC;IAC1G,CAAC;IAEY,QAAQ,CAAC,qBAAkD,EAAE,aAAqB;;;YAC3F,MAAM,OAAO,GAAG,MAAA,qBAAqB,CAAC,OAAO,mCAAI,qBAAqB,CAAC,OAAO,CAAC;YAC/E,aAAa,CAAC,OAAO,CAAC,CAAC;YACvB,OAAO;gBACH,OAAO,EAAE,oBAAoB,GAAG,CAAC,MAAA,qBAAqB,CAAC,OAAO,mCAAI,qBAAqB,CAAC,OAAO,CAAC;gBAChG,WAAW,8CAA6B;gBACxC,UAAU,EAAE,SAAS;gBACrB,YAAY,EAAE,SAAS;gBACvB,QAAQ,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,aAAa,CAAC,qBAAqB,CAAC;gBAC3E,SAAS,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,mBAAmB,CAAC,qBAAqB,CAAC;gBAClF,cAAc,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,sBAAsB,CAAC,qBAAqB,CAAC;gBAC1F,eAAe,EAAE,IAAI;gBACrB,OAAO,EAAE,IAAI;gBACb,SAAS,EAAE,IAAI,CAAC,iBAAiB,CAAC;oBAC9B,QAAQ,EAAE,aAAa;oBACvB,KAAK,EAAE,CAAC;oBACR,QAAQ,EAAE,SAAS;oBACnB,OAAO;oBACP,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,qBAAqB,CAAC,IAAI;oBAChC,EAAE,EAAE,SAAS;iBAChB,EAAE,MAAM,CAAC;aACb,CAAC;QACN,CAAC;KAAA;IAEM,iBAAiB,CAAC,MAAkC,EAAE,MAAkB;QAC3E,MAAM,YAAY,GAA2C,IAAI,KAAK,EAAmC,CAAC;QAC1G,MAAM,EAAE,GAAW,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC;QACxE,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;YACvC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAA;YACxB,IAAG,CAAC,CAAC;gBACD,OAAO;YACX,MAAM,CAAC,GAAuC;gBAC1C,KAAK,EAAE,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;gBACzB,QAAQ,EAAE,OAAO,MAAM,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS;gBAC/E,QAAQ,EAAE,EAAE;gBACZ,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,EAAE,EAAE,CAAC,CAAC;gBACnD,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,EAAE,EAAC,CAAC,CAAC,CAAC,IAAI;gBACnE,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,EAAE,EAAC,CAAC,CAAC,CAAC,KAAK;gBACrE,KAAK,EAAE,CAAC;gBACR,IAAI,EAAE,OAAO,CAAC,EAAE;aACnB,CAAC;YACF,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,EAAE;gBACtC,IAAI,EAAC,MAAM,CAAC,IAAI;gBAChB,EAAE,EAAC,MAAM,CAAC,EAAE;gBACZ,OAAO,EAAC,MAAM,CAAC,OAAO;gBACtB,QAAQ,EAAC,MAAM,CAAC,QAAQ;aAC3B,CAAC,CAAC,CAAC;QACR,CAAC,CAAC,CAAC;QACH,OAAO,YAAY,CAAC;IACxB,CAAC;IAED,6CAA6C;IACtC,eAAe,CAAC,CAAoC,EAAE,gBAA0C;QACnG,IAAI,CAAC,GAAsC,CAAC,CAAC;QAC7C,IAAG,IAAI,CAAC,wBAAwB,IAAE,IAAI,EAAC,CAAC;YACpC,IAAI,CAAC,wBAAwB,CAAC,eAAe,CAAC,CAAC,EAAC,gBAAgB,CAAC,CAAC;QACtE,CAAC;QACD,IAAG,gBAAgB,CAAC,EAAE,IAAI,iBAAiB,CAAC,WAAW,IAAI,CAAC,CAAC,QAAQ,IAAI,IAAI,IAAI,IAAI,CAAC,wBAAwB,IAAE,IAAI;YAChH,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC,QAAQ,GAAG,IAAI,CAAC,wBAAwB,CAAC,mBAAmB,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QACnL,OAAO,CAAC,CAAC;IACb,CAAC;CAEJ"}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.js

@@ -1 +1,2 @@
 export {};
+//# sourceMappingURL=TrackFactoryInterface.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TrackFactoryInterface.js","sourceRoot":"","sources":["../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.ts"],"names":[],"mappings":""}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts

@@ -1,13 +1,13 @@
 import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
 import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
-import { TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
 import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
-export declare class AlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignment]> {
+export declare class AlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
     private readonly experimentalTrackTitleFactory;
     private readonly modelTrackTitleFactory;
     constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
-    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string | RcsbFvLink>;
-    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
-    getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
+    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string | RcsbFvLink>;
+    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
+    getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
 }

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js

@@ -1,7 +1,7 @@
 import { __awaiter } from "tslib";
 import { ExperimentalAlignmentTrackTitleFactory } from "./ExperimentalAlignmentTrackTitleFactory";
 import { ModelAlignmentTrackTitleFactory } from "./ModelAlignmentTrackTitleFactory";
-import { TagDelimiter } from "@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter";
+import { TagDelimiter } from "@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter";
 export class AlignmentTrackTitleFactory {
     constructor(entityInstanceTranslator) {
         this.experimentalTrackTitleFactory = new ExperimentalAlignmentTrackTitleFactory(entityInstanceTranslator);
@@ -32,3 +32,4 @@ export class AlignmentTrackTitleFactory {
         });
     }
 }
+//# sourceMappingURL=AlignmentTrackTitleFactory.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AlignmentTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.ts"],"names":[],"mappings":";AAKA,OAAO,EAAC,sCAAsC,EAAC,MAAM,0CAA0C,CAAC;AAChG,OAAO,EAAC,+BAA+B,EAAC,MAAM,mCAAmC,CAAC;AAClF,OAAO,EAAC,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAE7E,MAAM,OAAO,0BAA0B;IAKnC,YAAY,wBAAyD;QACjE,IAAI,CAAC,6BAA6B,GAAG,IAAI,sCAAsC,CAAC,wBAAwB,CAAC,CAAC;QAC1G,IAAI,CAAC,sBAAsB,GAAG,IAAI,+BAA+B,CAAC,wBAAwB,CAAC,CAAC;IAChG,CAAC;IAEY,aAAa,CAAC,qBAAkD,EAAE,eAAiC;;YAC5G,IAAG,eAAe,CAAC,SAAS,IAAI,YAAY,CAAC,OAAO,CAAC,eAAe,CAAC,SAAS,CAAC;gBAC/E,OAAO,IAAI,CAAC,sBAAsB,CAAC,aAAa,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;;gBAEzF,OAAO,IAAI,CAAC,6BAA6B,CAAC,aAAa,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QACpG,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD,EAAE,eAAiC;;YAClH,IAAG,eAAe,CAAC,SAAS,IAAI,YAAY,CAAC,OAAO,CAAC,eAAe,CAAC,SAAS,CAAC;gBAC3E,OAAO,IAAI,CAAC,sBAAsB,CAAC,mBAAmB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;;gBAE/F,OAAO,IAAI,CAAC,6BAA6B,CAAC,mBAAmB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QAC9G,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD,EAAE,eAAiC;;YACrH,IAAG,eAAe,CAAC,SAAS,IAAI,YAAY,CAAC,OAAO,CAAC,eAAe,CAAC,SAAS,CAAC;gBAC3E,OAAO,IAAI,CAAC,sBAAsB,CAAC,sBAAsB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;;gBAElG,OAAO,IAAI,CAAC,6BAA6B,CAAC,sBAAsB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QACjH,CAAC;KAAA;CAEJ"}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js

@@ -32,3 +32,4 @@ export class AnnotationsTrackTitleFactory {
 function buildRowTitle(annConfig) {
     return annConfig.prefix ? FeatureTools.parseLink(annConfig.title) : annConfig.title;
 }
+//# sourceMappingURL=AnnotationsTrackTitleFactory.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnnotationsTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.ts"],"names":[],"mappings":";AAIA,OAAO,EAAC,uBAAuB,EAAC,MAAM,0DAA0D,CAAC;AACjG,OAAO,EAAC,YAAY,EAAC,MAAM,wDAAwD,CAAC;AAEpF,MAAM,OAAO,4BAA4B;IAE/B,aAAa,CAAC,YAAmC;;YACnD,MAAM,CAAC,GAAG,YAAY,CAAC,SAAS,EAAE,CAAC;YACnC,OAAO,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,KAAK,EAAE,CAAC;QACvD,CAAC;KAAA;IAEK,sBAAsB,CAAC,YAAmC;;;YAC5D,MAAM,UAAU,GAAa,KAAK,CAAC,IAAI,CAAC,MAAA,MAAA,YAAY,CAAC,SAAS,EAAE,0CAAE,cAAc,mCAAI,EAAE,CAAC,CAAC;YACxF,IACI,UAAU,CAAC,MAAM,IAAI,CAAC;;oBAEtB,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,uBAAuB,CAAC,cAAc,CAAC,GAAG,IAAI,UAAU,CAAC,CAAC,CAAC,KAAK,uBAAuB,CAAC,cAAc,CAAC,QAAQ,CAAC,EACtI,CAAC;gBACE,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,OAAO,CAAC;YAC/D,CAAC;iBAAI,CAAC;gBACF,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ,CAAC;YAChE,CAAC;QACL,CAAC;KAAA;IAEK,mBAAmB,CAAC,YAAmC;;;YACzD,OAAO,MAAA,MAAA,YAAY,CAAC,SAAS,EAAE,0CAAE,MAAM,mCAAI,EAAE,CAAC;QAClD,CAAC;KAAA;CAEJ;AAED,SAAS,aAAa,CAAC,SAAwC;IAC3D,OAAO,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,SAAS,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAA;AACvF,CAAC"}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.d.ts

@@ -1,13 +1,13 @@
 import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
 import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
-import { TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
 import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
-export declare class ExperimentalAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignment]> {
+export declare class ExperimentalAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
     private readonly entityInstanceTranslator;
     constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
-    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string | RcsbFvLink>;
-    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
-    getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
+    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string | RcsbFvLink>;
+    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
+    getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
     private buildInstanceId;
 }

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js

@@ -1,10 +1,10 @@
 import { __awaiter } from "tslib";
-import { SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import resource from "../../../../RcsbServerConfig/web.resources.json";
 import { RcsbAnnotationConstants } from "../../../../RcsbAnnotationConfig/RcsbAnnotationConstants";
 import { Assertions } from "../../../../RcsbUtils/Helpers/Assertions";
 var assertDefined = Assertions.assertDefined;
-import { TagDelimiter } from "@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter";
+import { TagDelimiter } from "@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter";
 export class ExperimentalAlignmentTrackTitleFactory {
     constructor(entityInstanceTranslator) {
         this.entityInstanceTranslator = undefined;
@@ -75,3 +75,4 @@ export class ExperimentalAlignmentTrackTitleFactory {
         return TagDelimiter.parseInstance(targetId).entryId + TagDelimiter.instance + (labelAsymId === authAsymId || !authAsymId ? labelAsymId : labelAsymId + "[auth " + authAsymId + "]");
     }
 }
+//# sourceMappingURL=ExperimentalAlignmentTrackTitleFactory.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ExperimentalAlignmentTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.ts"],"names":[],"mappings":";AAEA,OAAO,EAAC,iBAAiB,EAAmB,MAAM,6DAA6D,CAAC;AAEhH,OAAO,QAAQ,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,uBAAuB,EAAC,MAAM,0DAA0D,CAAC;AAEjG,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAE7E,MAAM,OAAO,sCAAsC;IAI/C,YAAY,wBAAyD;QAFpD,6BAAwB,GAA+C,SAAS,CAAC;QAG9F,IAAI,CAAC,wBAAwB,GAAG,wBAAwB,CAAC;IAC7D,CAAC;IAEY,aAAa,CAAC,qBAAkD,EAAE,eAAiC;;YAC5G,IAAI,QAA6B,CAAC;YAClC,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC;YACzC,IAAG,qBAAqB,CAAC,qBAAqB,EAAC,CAAC;gBAC5C,QAAQ,GAAG,eAAe,CAAC,SAAS,CAAC;YACzC,CAAC;iBAAM,IAAI,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,WAAW,IAAI,IAAI,CAAC,wBAAwB,IAAI,IAAI,EAAE,CAAC;gBAC7G,MAAM,QAAQ,GAAuB,IAAI,CAAC,wBAAwB,CAAC,qBAAqB,CAAC,YAAY,CAAC,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,UAAU,CAAC,CAAC;gBAC3J,aAAa,CAAC,QAAQ,CAAC,CAAC;gBACxB,QAAQ,GAAG;oBACP,UAAU,EAAC,IAAI,CAAC,eAAe,CAAC,eAAe,CAAC,SAAS,CAAC;oBAC1D,GAAG,EAAE,QAAgB,CAAC,UAAU,CAAC,GAAG,GAAC,YAAY,CAAC,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,OAAO,GAAC,UAAU,GAAC,QAAQ;oBACtH,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;wBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;qBAC7D;iBACJ,CAAC;YACN,CAAC;iBAAM,IAAI,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,SAAS,EAAE,CAAC;gBAClE,MAAM,QAAQ,GAAW,YAAY,CAAC,WAAW,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,QAAQ,CAAC;gBACtF,QAAQ,GAAG;oBACP,UAAU,EAAC,eAAe,CAAC,SAAS;oBACpC,GAAG,EAAE,QAAgB,CAAC,UAAU,CAAC,GAAG,GAAC,YAAY,CAAC,WAAW,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,OAAO,GAAC,UAAU,GAAC,QAAQ;oBACpH,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;wBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;qBAC7D;iBACJ,CAAC;YACN,CAAC;iBAAM,IAAI,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,OAAO,EAAE,CAAC;gBAChE,QAAQ,GAAG;oBACP,UAAU,EAAE,eAAe,CAAC,SAAS;oBACrC,GAAG,EAAG,QAAgB,CAAC,YAAY,CAAC,GAAG,GAAC,eAAe,CAAC,SAAS;oBACjE,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;wBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;qBAC7D;iBACJ,CAAC;YACN,CAAC;iBAAM,CAAC;gBACJ,QAAQ,GAAG,eAAe,CAAC,SAAS,CAAC;YACzC,CAAC;YACD,OAAO,QAAQ,CAAC;QACpB,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD,EAAE,eAAiC;;YAClH,OAAO,qBAAqB,CAAC,EAAE,IAAI,CAAC,qBAAqB,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA,CAAC,CAAC,qBAAqB,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,GAAG,GAAG,YAAY,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC;QACtK,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD,EAAE,eAAiC;;YACrH,IAAG,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,OAAO;gBACrD,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ,CAAC;YAChE,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,OAAO,CAAC;QAC/D,CAAC;KAAA;IAEO,eAAe,CAAC,QAAgB;;QACpC,MAAM,WAAW,GAAW,YAAY,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,UAAU,CAAC;QAC5E,MAAM,UAAU,GAAwB,MAAA,IAAI,CAAC,wBAAwB,0CAAE,mBAAmB,CAAC,WAAW,CAAC,CAAC;QACxG,OAAO,YAAY,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,OAAO,GAAC,YAAY,CAAC,QAAQ,GAAC,CAAC,WAAW,KAAK,UAAU,IAAI,CAAC,UAAU,CAAA,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,WAAW,GAAC,QAAQ,GAAC,UAAU,GAAC,GAAG,CAAC,CAAC;IAC7K,CAAC;CAEJ"}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.js

@@ -20,3 +20,4 @@ export class InstanceSequenceTrackTitleFactory {
         });
     }
 }
+//# sourceMappingURL=InstanceSequenceTrackTitleFactory.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"InstanceSequenceTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.ts"],"names":[],"mappings":";AAKA,OAAO,EAAC,yBAAyB,EAAC,MAAM,6BAA6B,CAAC;AAEtE,MAAM,OAAO,iCAAiC;IAI1C,YAAY,wBAAyD;QACjE,IAAI,CAAC,iBAAiB,GAAG,IAAI,yBAAyB,CAAC,wBAAwB,CAAC,CAAC;IACrF,CAAC;IAEY,aAAa,CAAC,qBAAkD;;YACzE,OAAO,IAAI,CAAC,iBAAiB,CAAC,aAAa,CAAC,qBAAqB,CAAC,CAAC;QACvE,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD;;YAC/E,OAAO,OAAO,CAAC;QACnB,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD;;YAClF,OAAO,IAAI,CAAC,iBAAiB,CAAC,sBAAsB,CAAC,qBAAqB,CAAC,CAAC;QAChF,CAAC;KAAA;CAEJ"}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts

@@ -1,12 +1,12 @@
 import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
 import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
 import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
-import { TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
-export declare class ModelAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignment]> {
+export declare class ModelAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
     private readonly alignmentTrackTitleFactory;
     constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
-    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string | RcsbFvLink>;
-    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
-    getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
+    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string | RcsbFvLink>;
+    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
+    getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
 }

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.js

@@ -25,3 +25,4 @@ export class ModelAlignmentTrackTitleFactory {
         });
     }
 }
+//# sourceMappingURL=ModelAlignmentTrackTitleFactory.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ModelAlignmentTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.ts"],"names":[],"mappings":";AAKA,OAAO,EAAC,uBAAuB,EAAC,MAAM,0DAA0D,CAAC;AACjG,OAAO,EAAC,sCAAsC,EAAC,MAAM,0CAA0C,CAAC;AAEhG,MAAM,OAAO,+BAA+B;IAIxC,YAAY,wBAAyD;QACjE,IAAI,CAAC,0BAA0B,GAAG,IAAI,sCAAsC,CAAC,wBAAwB,CAAC,CAAC;IAC3G,CAAC;IAEY,aAAa,CAAC,qBAAkD,EAAE,eAAiC;;YAC5G,MAAM,QAAQ,GAAwB,MAAM,IAAI,CAAC,0BAA0B,CAAC,aAAa,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;YAClI,OAAO,OAAO,QAAQ,KAAK,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,iCACzC,QAAQ,KACX,KAAK,EAAE;oBACH,UAAU,EAAC,MAAM;oBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;iBAC7D,GACJ,CAAC;QACN,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD,EAAE,eAAiC;;YAClH,OAAO,IAAI,CAAC,0BAA0B,CAAC,mBAAmB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QACvG,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD,EAAE,eAAiC;;YACrH,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,GAAG,CAAC;QAC3D,CAAC;KAAA;CACJ"}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js

@@ -1,11 +1,11 @@
 import { __awaiter } from "tslib";
-import { SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import resource from "../../../../RcsbServerConfig/web.resources.json";
 import { RcsbAnnotationConstants } from "../../../../RcsbAnnotationConfig/RcsbAnnotationConstants";
 import { TrackUtils } from "../TrackFactoryImpl/Helper/TrackUtils";
 import { Assertions } from "../../../../RcsbUtils/Helpers/Assertions";
 var assertDefined = Assertions.assertDefined;
-import { TagDelimiter } from "@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter";
+import { TagDelimiter } from "@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter";
 export class SequenceTrackTitleFactory {
     constructor(entityInstanceTranslator) {
         this.entityInstanceTranslator = undefined;
@@ -65,3 +65,4 @@ export class SequenceTrackTitleFactory {
         return (labelAsymId === authAsymId || !authAsymId ? labelAsymId : labelAsymId + "[auth " + authAsymId + "]");
     }
 }
+//# sourceMappingURL=SequenceTrackTitleFactory.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SequenceTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.ts"],"names":[],"mappings":";AAGA,OAAO,EAAC,iBAAiB,EAAC,MAAM,6DAA6D,CAAC;AAC9F,OAAO,QAAQ,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,uBAAuB,EAAC,MAAM,0DAA0D,CAAC;AAEjG,OAAO,EAAC,UAAU,EAAC,MAAM,uCAAuC,CAAC;AACjE,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,iDAAiD,CAAC;AAE7E,MAAM,OAAO,yBAAyB;IAIlC,YAAY,wBAAyD;QAFpD,6BAAwB,GAA+C,SAAS,CAAC;QAG9F,IAAI,CAAC,wBAAwB,GAAG,wBAAwB,CAAC;IAC7D,CAAC;IAEY,aAAa,CAAC,qBAAkD;;;YACzE,IAAI,QAA0B,CAAC;YAC/B,IAAG,CAAC,qBAAqB,CAAC,mBAAmB,IAAI,qBAAqB,CAAC,IAAI,KAAK,iBAAiB,CAAC,OAAO,EAAC,CAAC;gBACvG,QAAQ,GAAG;oBACP,UAAU,EAAE,MAAA,qBAAqB,CAAC,OAAO,mCAAI,EAAE;oBAC/C,GAAG,EAAG,QAAgB,CAAC,YAAY,CAAC,GAAG,GAAC,qBAAqB,CAAC,OAAO;oBACrE,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;wBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;qBAC7D;iBACJ,CAAC;YACN,CAAC;iBAAK,IAAG,CAAC,qBAAqB,CAAC,mBAAmB,IAAI,qBAAqB,CAAC,IAAI,KAAK,iBAAiB,CAAC,WAAW,IAAI,IAAI,CAAC,wBAAwB,IAAE,IAAI,EAAE,CAAC;gBACzJ,QAAQ,GAAG;oBACP,UAAU,EAAE,qBAAqB,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC,qBAAqB,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE;oBACpG,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;qBACpB;iBACJ,CAAC;YACN,CAAC;iBAAI,CAAC;gBACF,QAAQ,GAAG;oBACP,UAAU,EAAE,MAAA,qBAAqB,CAAC,OAAO,mCAAI,CAAC,MAAA,qBAAqB,CAAC,OAAO,mCAAI,EAAE,CAAC;oBAClF,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;qBACpB;iBACJ,CAAC;YACN,CAAC;YACD,OAAO,QAAQ,CAAA;QACnB,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD;;;YAC/E,OAAO,CAAC,qBAAqB,CAAC,IAAI,IAAI,CAAC,qBAAqB,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,qBAAqB,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,EAAC,GAAG,CAAC,GAAC,GAAG,GAAC,YAAY,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,MAAA,qBAAqB,CAAC,cAAc,mCAAI,EAAE,CAAC,CAAC;QACnN,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD;;;YAClF,MAAM,OAAO,GAAG,MAAA,qBAAqB,CAAC,OAAO,mCAAI,qBAAqB,CAAC,OAAO,CAAC;YAC/E,aAAa,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,qBAAqB,CAAC,IAAI,CAAC,CAAC;YAClE,OAAO,UAAU,CAAC,6BAA6B,CAAC,OAAO,EAAC,qBAAqB,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC;QAC9F,CAAC;KAAA;IAEO,eAAe,CAAC,QAAgB;;QACpC,MAAM,WAAW,GAAW,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QACpE,MAAM,UAAU,GAAuB,MAAA,IAAI,CAAC,wBAAwB,0CAAE,mBAAmB,CAAC,WAAW,CAAC,CAAC;QACvG,OAAO,CAAC,WAAW,KAAK,UAAU,IAAI,CAAC,UAAU,CAAA,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,WAAW,GAAC,QAAQ,GAAC,UAAU,GAAC,GAAG,CAAC,CAAC;IAC1G,CAAC;CAEJ"}

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.js

@@ -1 +1,2 @@
 export {};
+//# sourceMappingURL=TrackTitleFactoryInterface.js.map

package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TrackTitleFactoryInterface.js","sourceRoot":"","sources":["../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.ts"],"names":[],"mappings":""}

package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.d.ts

@@ -1,7 +1,7 @@
-import React from "react";
+import React, { ReactNode } from "react";
 import { RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
+import { SearchQuery } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
+import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
 interface SequenceTabInterface {
     groupProvenanceId: GroupProvenanceId;
     groupId: string;
@@ -19,7 +19,7 @@ export declare class GroupPfvTabs extends React.Component<SequenceTabInterface>
         groupId: string;
         searchQuery: SearchQuery;
     });
-    render(): JSX.Element;
+    render(): ReactNode;
     private onMount;
     private syncPositionAndHighlight;
     private onSelect;

package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js

@@ -1,11 +1,11 @@
 import { __awaiter } from "tslib";
 import { jsx as _jsx } from "react/jsx-runtime";
 import React from "react";
-import { FieldName, OperationType, Source, } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { FieldName, OperationType, AnnotationReference, } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { searchRequestProperty } from "../../RcsbSeacrh/SearchRequestProperty";
-import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
+import { ReturnType } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchEnums";
 import { RcsbTabs } from "../RcsbFvComponents/RcsbTabs";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
+import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
 import { SearchQueryTools as SQT } from "../../RcsbSeacrh/SearchQueryTools";
 import { GroupPfvApp as GPA } from "./GroupTabs/GroupPfvApp";
 import { asyncScheduler } from "rxjs";
@@ -80,33 +80,34 @@ export class GroupPfvTabs extends React.Component {
     }
     renderPositionalFeatureViewer(tabKey) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e;
+            var _a, _b, _c, _d, _e, _f, _g, _h;
             switch (tabKey) {
                 case ALIGNMENT:
-                    this.featureViewers.set(tabKey, yield GPA.alignment(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_a = this.entityCount) !== null && _a !== void 0 ? _a : 0, Object.assign(Object.assign({ page: { first: 50, after: "0" } }, this.props.additionalConfig), { alignmentFilter: this.filterEntities })));
+                    this.featureViewers.set(tabKey, yield GPA.alignment(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_a = this.entityCount) !== null && _a !== void 0 ? _a : 0, Object.assign(Object.assign({ page: { first: 50, after: 0 } }, this.props.additionalConfig), { alignmentFilter: this.filterEntities })));
                     break;
                 case BINDING_SITES:
-                    this.featureViewers.set(tabKey, yield GPA.bindingSites(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_c = (_b = this.filterInstances) === null || _b === void 0 ? void 0 : _b.length) !== null && _c !== void 0 ? _c : 0, Object.assign(Object.assign({ page: { first: 0, after: "0" } }, this.props.additionalConfig), { alignmentFilter: this.props.searchQuery ? this.filterEntities : undefined, filters: this.props.searchQuery ? [{
-                                source: Source.PdbInstance,
+                    this.featureViewers.set(tabKey, yield GPA.bindingSites(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_c = (_b = this.filterInstances) === null || _b === void 0 ? void 0 : _b.length) !== null && _c !== void 0 ? _c : 0, Object.assign(Object.assign({ page: { first: 1, after: 0 } }, this.props.additionalConfig), { alignmentFilter: this.props.searchQuery ? this.filterEntities : undefined, filters: this.props.searchQuery ? [{
+                                source: AnnotationReference.PdbInstance,
                                 field: FieldName.TargetId,
                                 operation: OperationType.Equals,
-                                values: this.filterInstances
+                                values: (_d = this.filterInstances) !== null && _d !== void 0 ? _d : []
                             }] : undefined })));
                     break;
                 case STRUCTURAL_FEATURES:
-                    this.featureViewers.set(tabKey, yield GPA.structure(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_e = (_d = this.filterInstances) === null || _d === void 0 ? void 0 : _d.length) !== null && _e !== void 0 ? _e : 0, Object.assign(Object.assign({ page: { first: 0, after: "0" } }, this.props.additionalConfig), { alignmentFilter: this.props.searchQuery ? this.filterEntities : undefined, filters: this.props.searchQuery ? [{
-                                source: Source.PdbInstance,
+                    this.featureViewers.set(tabKey, yield GPA.structure(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_f = (_e = this.filterInstances) === null || _e === void 0 ? void 0 : _e.length) !== null && _f !== void 0 ? _f : 0, Object.assign(Object.assign({ page: { first: 1, after: 0 } }, this.props.additionalConfig), { alignmentFilter: this.props.searchQuery ? this.filterEntities : undefined, filters: this.props.searchQuery ? [{
+                                source: AnnotationReference.PdbInstance,
                                 field: FieldName.TargetId,
                                 operation: OperationType.Equals,
-                                values: this.filterInstances
+                                values: (_g = this.filterInstances) !== null && _g !== void 0 ? _g : []
                             }, {
-                                source: Source.PdbEntity,
+                                source: AnnotationReference.PdbEntity,
                                 field: FieldName.TargetId,
                                 operation: OperationType.Equals,
-                                values: this.filterEntities
+                                values: (_h = this.filterEntities) !== null && _h !== void 0 ? _h : []
                             }] : undefined })));
                     break;
             }
         });
     }
 }
+//# sourceMappingURL=GroupPfvTabs.js.map

package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js.map

@@ -0,0 +1 @@
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package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.d.ts

@@ -1,10 +1,10 @@
 import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../../RcsbFvModule/RcsbFvModuleInterface";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-import { GroupReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
+import { GroupReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { ActionMethods } from "../../../RcsbFvUI/Helper/ActionMethods";
 export declare namespace GroupPfvApp {
     function alignment(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, entityCount: number, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;
     function structure(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, nTargets: number, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
     function bindingSites(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, nTargets: number, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
 }
-export declare function getReferenceFromGroupProvenance(groupProvenanceId: GroupProvenanceId): GroupReference;
+export declare function getReferenceFromGroupProvenance(groupProvenanceId: GroupProvenanceId): GroupReference | undefined;

package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js

@@ -1,9 +1,9 @@
 import { __awaiter } from "tslib";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
+import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
 import { RcsbFvUniprotBuilder } from "../../RcsbFvBuilder/RcsbFvUniprotBuilder";
 import { groupExternalTrackBuilder } from "../../../RcsbUtils/TrackGenerators/GroupExternalTrackBuilder";
 import { RcsbFvGroupBuilder } from "../../RcsbFvBuilder/RcsbFvGroupBuilder";
-import { FieldName, GroupReference, OperationType, SequenceReference, Source, Type } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { FieldName, GroupReference, OperationType, SequenceReference, AnnotationReference, FeaturesType } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { alignmentGlobalLigandBindingSite } from "../../../RcsbUtils/TrackGenerators/AlignmentGlobalBindingSite";
 import { RcsbTabs } from "../../RcsbFvComponents/RcsbTabs";
 import { GroupPfvUI } from "../../../RcsbFvUI/GroupPfvUI";
@@ -32,12 +32,12 @@ export var GroupPfvApp;
                         component: PaginationItemComponent,
                         props: {
                             count: entityCount,
-                            after: (_b = (_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _a === void 0 ? void 0 : _a.after) !== null && _b !== void 0 ? _b : "0",
+                            after: (_b = (_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _a === void 0 ? void 0 : _a.after) !== null && _b !== void 0 ? _b : 0,
                             first: (_d = (_c = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _c === void 0 ? void 0 : _c.first) !== null && _d !== void 0 ? _d : 50,
                             stateChange: (state, prevState) => {
                                 paginationCallback(elementId, pfv, RcsbFvGroupBuilder.buildGroupAlignmentFv, pfvArgs, Object.assign(Object.assign({}, additionalConfig), { page: {
                                         first: state.first,
-                                        after: state.after.toString()
+                                        after: state.after
                                     }, excludeLogo: true }));
                             }
                         }
@@ -53,15 +53,15 @@ export var GroupPfvApp;
             var _a;
             additionalConfig = Object.assign(Object.assign({}, additionalConfig), { filters: [...((_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.filters) !== null && _a !== void 0 ? _a : []), {
                         field: FieldName.Type,
-                        values: [Type.HelixP, Type.Sheet, Type.Cath, Type.Scop],
+                        values: [FeaturesType.HelixP, FeaturesType.Sheet, FeaturesType.Cath, FeaturesType.Scop],
                         operation: OperationType.Equals,
-                        source: Source.PdbInstance
+                        source: AnnotationReference.PdbInstance
                     }, {
                         field: FieldName.Type,
-                        values: [Type.Pfam],
+                        values: [FeaturesType.Pfam],
                         operation: OperationType.Equals,
-                        source: Source.PdbEntity
-                    }], sources: [Source.PdbInstance, Source.PdbEntity], annotationProcessing: annotationPositionFrequencyProcessing(nTargets), externalTrackBuilder: groupExternalTrackBuilder() });
+                        source: AnnotationReference.PdbEntity
+                    }], sources: [AnnotationReference.PdbInstance, AnnotationReference.PdbEntity], annotationProcessing: annotationPositionFrequencyProcessing(nTargets), externalTrackBuilder: groupExternalTrackBuilder() });
             // SequenceReference.PdbEntity && SequenceReference.Uniprot are needed to add row prefixes
             const pfvArgs = [
                 getReferenceFromGroupProvenance(groupProvenanceId),
@@ -78,10 +78,10 @@ export var GroupPfvApp;
             var _a;
             additionalConfig = Object.assign(Object.assign({}, additionalConfig), { filters: [...((_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.filters) !== null && _a !== void 0 ? _a : []), {
                         field: FieldName.Type,
-                        values: [Type.BindingSite],
+                        values: [FeaturesType.BindingSite],
                         operation: OperationType.Equals,
-                        source: Source.PdbInstance
-                    }], sources: [Source.PdbInstance], annotationProcessing: annotationPositionFrequencyProcessing(nTargets), externalTrackBuilder: alignmentGlobalLigandBindingSite() });
+                        source: AnnotationReference.PdbInstance
+                    }], sources: [AnnotationReference.PdbInstance], annotationProcessing: annotationPositionFrequencyProcessing(nTargets), externalTrackBuilder: alignmentGlobalLigandBindingSite(), isAnnotationsGroupSummary: false });
             // SequenceReference.PdbEntity && SequenceReference.Uniprot are needed to add row prefixes
             const pfvArgs = [
                 getReferenceFromGroupProvenance(groupProvenanceId),
@@ -95,25 +95,31 @@ export var GroupPfvApp;
     GroupPfvApp.bindingSites = bindingSites;
 })(GroupPfvApp || (GroupPfvApp = {}));
 function annotationPositionFrequencyProcessing(nTargets) {
-    const targets = new Map();
+    const targetValues = new Map();
+    const targetSet = new Map();
     return {
         getAnnotationValue: (feature) => {
             var _a, _b, _c, _d;
-            if (!targets.has(feature.type)) {
-                if (feature.d.value)
-                    targets.set(feature.type, feature.d.value);
-                return (_b = (_a = feature.p.values) === null || _a === void 0 ? void 0 : _a[0]) !== null && _b !== void 0 ? _b : 0;
-            }
-            else {
-                return (_d = (_c = feature.p.values) === null || _c === void 0 ? void 0 : _c[0]) !== null && _d !== void 0 ? _d : 0;
-            }
+            if (!targetValues.has(feature.type))
+                targetValues.set(feature.type, 0);
+            if (!targetSet.has(feature.type))
+                targetSet.set(feature.type, new Set());
+            if (feature.type === "SCOP:Prokaryotic (50S subunit)")
+                console.log(feature);
+            if (typeof feature.d.value === "number")
+                targetValues.set(feature.type, (_a = feature.d.value) !== null && _a !== void 0 ? _a : 0);
+            else
+                (_b = targetSet.get(feature.type)) === null || _b === void 0 ? void 0 : _b.add(feature.targetId);
+            return (_d = (_c = feature.p.values) === null || _c === void 0 ? void 0 : _c[0]) !== null && _d !== void 0 ? _d : 1;
         },
         computeAnnotationValue: (annotationTracks) => {
             annotationTracks.forEach((at, type) => {
-                const N = (type.includes(Type.Cath) || type.includes(Type.Scop) || type.includes(Type.BindingSite) || type.includes(Type.Pfam)) ? targets.get(type) : nTargets;
+                var _a;
+                const isType = (type.includes(FeaturesType.Cath) || type.includes(FeaturesType.Scop) || type.includes(FeaturesType.BindingSite) || type.includes(FeaturesType.Pfam));
+                const N = isType ? (targetValues.get(type) != 0 ? targetValues.get(type) : (_a = targetSet.get(type)) === null || _a === void 0 ? void 0 : _a.size) : nTargets;
                 at.forEach((ann, positionKey) => {
-                    if (ann.source != Source.PdbInterface)
-                        ann.value = Math.ceil(1000 * ann.value / (N !== null && N !== void 0 ? N : 1)) / 1000;
+                    if (ann.source != AnnotationReference.PdbInterface)
+                        ann.value = Math.round(100 * ann.value / (N !== null && N !== void 0 ? N : 1)) / 100;
                 });
             });
         }
@@ -129,3 +135,4 @@ export function getReferenceFromGroupProvenance(groupProvenanceId) {
             return GroupReference.MatchingUniprotAccession;
     }
 }
+//# sourceMappingURL=GroupPfvApp.js.map

package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js.map

@@ -0,0 +1 @@
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package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.d.ts

@@ -1,5 +1,5 @@
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
+import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
+import { SearchQuery } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
 import { RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
 export declare class RcsbFvGroupTabsBuilder {
     static buildGroupTabs(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig): void;

package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.js

@@ -10,3 +10,4 @@ export class RcsbFvGroupTabsBuilder {
         createRoot(element).render(_jsx(GroupPfvTabs, { groupProvenanceId: groupProvenanceId, groupId: groupId, searchQuery: query, additionalConfig: additionalConfig }));
     }
 }
+//# sourceMappingURL=RcsbFvGroupTabsBuilder.js.map

package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"RcsbFvGroupTabsBuilder.js","sourceRoot":"","sources":["../../../src/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.tsx"],"names":[],"mappings":";AAEA,OAAO,EAAC,YAAY,EAAC,MAAM,gBAAgB,CAAC;AAC5C,OAAO,EAAC,UAAU,EAAC,MAAM,kBAAkB,CAAC;AAC5C,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAGhD,MAAM,OAAO,sBAAsB;IAC/B,MAAM,CAAC,cAAc,CAAC,SAAiB,EAAE,iBAAoC,EAAE,OAAe,EAAE,KAAkB,EAAE,gBAAwC;QACxJ,MAAM,OAAO,GAAG,QAAQ,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC;QACnD,aAAa,CAAC,OAAO,CAAC,CAAC;QACvB,UAAU,CAAC,OAAO,CAAC,CAAC,MAAM,CACtB,KAAC,YAAY,IAAC,iBAAiB,EAAE,iBAAiB,EAAE,OAAO,EAAE,OAAO,EAAE,WAAW,EAAE,KAAK,EAAE,gBAAgB,EAAE,gBAAgB,GAAG,CAClI,CAAA;IACL,CAAC;CACJ"}

package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts

@@ -4,7 +4,7 @@ import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/Poly
 import { AlignmentCollectorInterface } from "../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
 import { AnnotationRequestContext, AnnotationCollectorInterface } from "../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
 import { RcsbFvModuleBuildInterface, RcsbFvModuleInterface } from "./RcsbFvModuleInterface";
-import { AlignmentResponse, AnnotationFeatures, Feature, TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceAlignments, SequenceAnnotations, Features, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { TrackFactoryInterface } from "../RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface";
 import { AlignmentRequestContextType } from "../RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory";
 import { AnnotationConfigInterface } from "../../RcsbAnnotationConfig/AnnotationConfigInterface";
@@ -29,18 +29,18 @@ export declare abstract class RcsbFvAbstractModule implements RcsbFvModuleInterf
     activeDisplay(): boolean;
     getFv(): RcsbFv;
     getTargets(): Promise<Array<string>>;
-    getAlignmentResponse(): Promise<AlignmentResponse>;
-    getFeatures(): Promise<Array<Feature>>;
+    getAlignmentResponse(): Promise<SequenceAlignments>;
+    getFeatures(): Promise<Array<Features>>;
     getAnnotationConfigData(): Promise<Array<RcsbFvRowConfigInterface>>;
     build(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
     wait(): Promise<void>;
     protected abstract protectedBuild(): Promise<void>;
     protected abstract concatAlignmentAndAnnotationTracks(): void;
-    protected buildAlignmentTracks(alignmentRequestContext: AlignmentRequestContextType, alignmentResponse: AlignmentResponse, trackFactories?: {
-        alignmentTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>;
+    protected buildAlignmentTracks(alignmentRequestContext: AlignmentRequestContextType, alignmentResponse: SequenceAlignments, trackFactories?: {
+        alignmentTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]>;
         sequenceTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, string]>;
     }): Promise<void>;
-    protected buildAnnotationsTrack(annotationsRequestContext: AnnotationRequestContext, annotationsFeatures: AnnotationFeatures[], annotationConfigMap?: AnnotationConfigInterface): Promise<void>;
+    protected buildAnnotationsTrack(annotationsRequestContext: AnnotationRequestContext, annotationsFeatures: SequenceAnnotations[], annotationConfigMap?: AnnotationConfigInterface): Promise<void>;
     protected getBoardConfig(): Promise<RcsbFvBoardConfigInterface>;
     protected getRowsConfig(): Promise<Array<RcsbFvRowConfigInterface>>;
     private buildExternalTracks;

package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js

@@ -141,3 +141,4 @@ export class RcsbFvAbstractModule {
         });
     }
 }
+//# sourceMappingURL=RcsbFvAbstractModule.js.map

package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js.map

@@ -0,0 +1 @@
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