@rcsb/rcsb-saguaro-app 6.2.2 → 6.2.3

package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js

@@ -1,7 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.GroupPfvApp = void 0;
-exports.getReferenceFromGroupProvenance = getReferenceFromGroupProvenance;
+exports.getReferenceFromGroupProvenance = exports.GroupPfvApp = void 0;
 const tslib_1 = require("tslib");
 const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
 const RcsbFvUniprotBuilder_1 = require("../../RcsbFvBuilder/RcsbFvUniprotBuilder");
@@ -16,8 +15,8 @@ const PaginationItemComponent_1 = require("../../../RcsbFvUI/Components/Paginati
 var GroupPfvApp;
 (function (GroupPfvApp) {
     function alignment(elementId, groupProvenanceId, groupId, entityCount, additionalConfig) {
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             switch (groupProvenanceId) {
                 case DwEnums_1.GroupProvenanceId.ProvenanceMatchingUniprotAccession:
                     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotMultipleEntitySequenceFv(elementId, elementId + RcsbTabs_1.RcsbTabs.SELECT_SUFFIX, groupId, {}, additionalConfig);
@@ -53,8 +52,8 @@ var GroupPfvApp;
     }
     GroupPfvApp.alignment = alignment;
     function structure(elementId, groupProvenanceId, groupId, nTargets, additionalConfig) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             additionalConfig = Object.assign(Object.assign({}, additionalConfig), { filters: [...((_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.filters) !== null && _a !== void 0 ? _a : []), {
                         field: GqlTypes_1.FieldName.Type,
                         values: [GqlTypes_1.Type.HelixP, GqlTypes_1.Type.Sheet, GqlTypes_1.Type.Cath, GqlTypes_1.Type.Scop],
@@ -78,8 +77,8 @@ var GroupPfvApp;
     }
     GroupPfvApp.structure = structure;
     function bindingSites(elementId, groupProvenanceId, groupId, nTargets, additionalConfig) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             additionalConfig = Object.assign(Object.assign({}, additionalConfig), { filters: [...((_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.filters) !== null && _a !== void 0 ? _a : []), {
                         field: GqlTypes_1.FieldName.Type,
                         values: [GqlTypes_1.Type.BindingSite],
@@ -133,3 +132,4 @@ function getReferenceFromGroupProvenance(groupProvenanceId) {
             return GqlTypes_1.GroupReference.MatchingUniprotAccession;
     }
 }
+exports.getReferenceFromGroupProvenance = getReferenceFromGroupProvenance;

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js

@@ -94,8 +94,8 @@ class RcsbFvAbstractModule {
         return this.rcsbFvRowUpdatePromise;
     }
     buildAlignmentTracks(alignmentRequestContext, alignmentResponse, trackFactories) {
+        var _a, _b, _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
             const sequenceTrackFactory = (_a = trackFactories === null || trackFactories === void 0 ? void 0 : trackFactories.sequenceTrackFactory) !== null && _a !== void 0 ? _a : new SequenceTrackFactory_1.SequenceTrackFactory(this.getPolymerEntityInstanceTranslator());
             if (alignmentResponse.query_sequence)
                 this.referenceTrack = yield sequenceTrackFactory.getTrack(alignmentRequestContext, alignmentResponse.query_sequence);
@@ -104,8 +104,8 @@ class RcsbFvAbstractModule {
         });
     }
     buildAnnotationsTrack(annotationsRequestContext, annotationsFeatures, annotationConfigMap) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const defaultAnnotationConfigMap = annotationConfigMap !== null && annotationConfigMap !== void 0 ? annotationConfigMap : acm;
             const annotationsBlockFactory = new AnnotationsBlockFactory_1.AnnotationsBlockFactory(new AnnotationBlockManager_1.AnnotationBlockManager(new AnnotationTrackManager_1.AnnotationTrackManagerFactory(), new RcsbAnnotationConfig_1.RcsbAnnotationConfig(defaultAnnotationConfigMap), this.getPolymerEntityInstanceTranslator()), new AnnotationsTrackFactory_1.AnnotationsTrackFactory(), (_b = (_a = this.buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.trackConfigModifier) === null || _b === void 0 ? void 0 : _b.annotations);
             this.annotationTracks = yield annotationsBlockFactory.getBlock(annotationsRequestContext, annotationsFeatures);
@@ -122,8 +122,8 @@ class RcsbFvAbstractModule {
         });
     }
     buildExternalTracks() {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const externalTrackBuilder = (_a = this.buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.externalTrackBuilder;
             const rcsbContext = (_b = this.buildConfig.additionalConfig) === null || _b === void 0 ? void 0 : _b.rcsbContext;
             if (!externalTrackBuilder)

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js

@@ -142,8 +142,8 @@ class RcsbFvChromosome extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.collectChromosomeAlignments(chrId, GqlTypes_1.SequenceReference.NcbiProtein);
     }
     collectPdbWorkerResults(ar, pdbEntityId, chrId) {
+        var _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _c, _d;
             assertElementListDefined(ar.target_alignment);
             const exonTracks = this.collectExons(ar.target_alignment, "target", RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbPdb, RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbPdb, GqlTypes_1.SequenceReference.PdbEntity, chrId);
             this.pdbEntityTrack = this.mergeExonTracks(exonTracks, GqlTypes_1.SequenceReference.PdbEntity)[0];
@@ -624,8 +624,8 @@ class RcsbFvChromosome extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         });
     }
     setDisplayView() {
+        var _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _c, _d, _e, _f, _g, _h, _j;
             if (this.entityBegin == 0 && this.entityEnd == 0 && ((_e = (_d = (_c = this.pdbEntityTrack) === null || _c === void 0 ? void 0 : _c.displayConfig) === null || _d === void 0 ? void 0 : _d.length) !== null && _e !== void 0 ? _e : 0) > 0) {
                 const d = (_f = this.pdbEntityTrack.displayConfig) === null || _f === void 0 ? void 0 : _f[0].displayData;
                 if (!d)
@@ -662,8 +662,8 @@ class RcsbFvChromosome extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         });
     }
     plot() {
+        var _c, _d, _e, _f;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _c, _d, _e, _f;
             console.log("PROCESSING");
             let tracks = new Array();
             let ncbiTracks = new Array();

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.js

@@ -6,8 +6,8 @@ const RcsbFvAbstractModule_1 = require("./RcsbFvAbstractModule");
 const PlainAlignmentTrackFactory_1 = require("../RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory");
 class RcsbFvDataProvider extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o;
             if ((_b = (_a = this.buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.dataProvider) === null || _b === void 0 ? void 0 : _b.alignments) {
                 this.alignmentCollector = this.buildConfig.additionalConfig.dataProvider.alignments.collector;
                 const alignmentResponse = yield this.alignmentCollector.collect(Object.assign({}, (_d = (_c = this.buildConfig.additionalConfig) === null || _c === void 0 ? void 0 : _c.dataProvider) === null || _d === void 0 ? void 0 : _d.alignments.context), (_e = this.buildConfig.additionalConfig) === null || _e === void 0 ? void 0 : _e.alignmentFilter);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js

@@ -14,8 +14,8 @@ class RcsbFvEntity extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.unmodeledTrackBuilder = new UnmodeledTrackBuilder_1.UnmodeledTrackBuilder();
     }
     protectedBuild() {
+        var _a, _b, _c, _d, _e, _f, _g;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.entityId);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js

@@ -12,8 +12,8 @@ const Operator_1 = require("../../RcsbUtils/Helpers/Operator");
 const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
 class RcsbFvGroupAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.groupId), assertDefined(buildConfig.group), assertDefined((_a = buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.page);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.js

@@ -10,8 +10,8 @@ var assertDefined = Assertions_1.Assertions.assertDefined;
 const annotationConfigMap = acm;
 class RcsbFvGroupAnnotation extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.group), assertDefined(buildConfig.groupId), assertDefined((_a = buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.page);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js

@@ -11,8 +11,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvInstance extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
             const buildConfig = this.buildConfig;
             const instanceId = buildConfig.instanceId;
             assertDefined(instanceId);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js

@@ -1,8 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbFvInterface = void 0;
-exports.interfaceAnnotations = interfaceAnnotations;
-exports.filter = filter;
+exports.filter = exports.interfaceAnnotations = exports.RcsbFvInterface = void 0;
 const tslib_1 = require("tslib");
 const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
 const RcsbFvAbstractModule_1 = require("./RcsbFvAbstractModule");
@@ -19,8 +17,8 @@ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimite
 const annotationConfigMap = acm;
 class RcsbFvInterface extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e;
             const buildConfig = this.buildConfig;
             const instanceId = buildConfig.instanceId;
             assertDefined(instanceId);
@@ -65,8 +63,8 @@ class RcsbFvInterface extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
                     this.alignmentTracks.concat(this.annotationTracks);
     }
     typeSuffix(ann, d) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             if (ann.source === GqlTypes_1.Source.PdbInterface && ((_a = ann.target_identifiers) === null || _a === void 0 ? void 0 : _a.interface_id)) {
                 return ann.target_identifiers.interface_id + "|" + ann.target_identifiers.interface_partner_index;
             }
@@ -122,8 +120,10 @@ function interfaceAnnotations(annotations) {
         resolve(out);
     });
 }
+exports.interfaceAnnotations = interfaceAnnotations;
 function filter(ann) {
     return new Promise(resolve => {
         resolve((0, BurialFraction_1.burialFractionFilter)((0, BuriedResidues_1.buriedResiduesFilter)(ann)));
     });
 }
+exports.filter = filter;

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvPairwiseAlignment.js

@@ -8,8 +8,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvPairwiseAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.psa);
             const pab = new PairwiseAlignmentBuilder_1.PairwiseAlignmentBuilder(buildConfig.psa);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js

@@ -8,8 +8,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvProteinSequence extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e;
             const buildConfig = this.buildConfig;
             const queryId = buildConfig.queryId;
             assertDefined(queryId);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js

@@ -10,8 +10,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvUniprot extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d;
             const buildConfig = this.buildConfig;
             const upAcc = buildConfig.upAcc;
             assertDefined(upAcc);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js

@@ -10,8 +10,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvUniprotAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             const buildConfig = this.buildConfig;
             assertDefined((_a = buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.page), assertDefined(buildConfig.upAcc);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js

@@ -14,8 +14,8 @@ class RcsbFvUniprotEntity extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.unmodeledTrackBuilder = new UnmodeledTrackBuilder_1.UnmodeledTrackBuilder();
     }
     protectedBuild() {
+        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
             const buildConfig = this.buildConfig;
             const upAcc = buildConfig.upAcc;
             const entityId = buildConfig.entityId;
@@ -65,8 +65,8 @@ class RcsbFvUniprotEntity extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.rowConfigData = [this.referenceTrack].concat(this.alignmentTracks).concat(this.annotationTracks);
     }
     titleSuffix(ann, d) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             if (this.polymerEntityInstance != null && ann.source === GqlTypes_1.Source.PdbInstance) {
                 const labelAsymId = (_a = ann.target_id) === null || _a === void 0 ? void 0 : _a.split(TagDelimiter_1.TagDelimiter.instance)[1];
                 if (!labelAsymId)

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js

@@ -9,8 +9,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvUniprotInstance extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
+        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
             const buildConfig = this.buildConfig;
             const upAcc = buildConfig.upAcc;
             const entityId = buildConfig.entityId;

package/lib/commonjs/RcsbGroupWeb/RcsbGroupBuilder.js

@@ -1,11 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.searchQueryContextManager = void 0;
-exports.buildSearchRequest = buildSearchRequest;
-exports.buildGroup = buildGroup;
-exports.buildGroupMembers = buildGroupMembers;
-exports.buildGroupContent = buildGroupContent;
-exports.buildResidueDistribution = buildResidueDistribution;
+exports.searchQueryContextManager = exports.buildResidueDistribution = exports.buildGroupContent = exports.buildGroupMembers = exports.buildGroup = exports.buildSearchRequest = void 0;
 const tslib_1 = require("tslib");
 const RcsbGroupDisplay_1 = require("./RcsbGroupView/RcsbGroupDisplay");
 const EntityGranularitySearchFacetStore_1 = require("../RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore");
@@ -15,20 +10,25 @@ function buildSearchRequest(elementId, searchQuery, returnType) {
         yield RcsbGroupDisplay_1.RcsbGroupDisplay.displayRcsbSearchStats(elementId, EntityGranularitySearchFacetStore_1.entityGranularityGroupFacetStore, searchQuery, returnType);
     });
 }
+exports.buildSearchRequest = buildSearchRequest;
 function buildGroup(elementId, groupProvenance, groupId, query, facetLayoutGrid, additionalProperties) {
     return tslib_1.__awaiter(this, void 0, void 0, function* () {
         yield RcsbGroupDisplay_1.RcsbGroupDisplay.displaySearchAttributes(elementId, groupProvenance, groupId, query, facetLayoutGrid, additionalProperties);
     });
 }
+exports.buildGroup = buildGroup;
 function buildGroupMembers(elementId, groupProvenance, groupId, nRows, nColumns, query) {
     RcsbGroupDisplay_1.RcsbGroupDisplay.displayGroupMembers(elementId, groupProvenance, groupId, nRows, nColumns, query);
 }
+exports.buildGroupMembers = buildGroupMembers;
 function buildGroupContent(elementId, groupProvenance, groupId, query, textConfig) {
     RcsbGroupDisplay_1.RcsbGroupDisplay.displayGroupContent(elementId, groupProvenance, groupId, query, textConfig);
 }
+exports.buildGroupContent = buildGroupContent;
 function buildResidueDistribution(elementId, granularity, rcsbId, facetLayoutGrid, chartDisplayConfig) {
     RcsbGroupDisplay_1.RcsbGroupDisplay.displayResidueDistribution(elementId, granularity, rcsbId, facetLayoutGrid, chartDisplayConfig);
 }
+exports.buildResidueDistribution = buildResidueDistribution;
 exports.searchQueryContextManager = {
     subscribe(f) {
         return SearchQueryContextManager_1.SearchQueryContextManager.subscribe(f);

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.js

@@ -11,8 +11,8 @@ const RcsbRequestContextManager_1 = require("../../../RcsbRequest/RcsbRequestCon
 var GroupChartMap;
 (function (GroupChartMap) {
     function getChartMap(groupProvenanceId, groupId, searchQuery) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             const facetStore = SearchQueryTools_1.SearchQueryTools.getFacetStoreFromGroupProvenance(groupProvenanceId);
             let facets = [];
             for (const service of facetStore.getServices()) {
@@ -48,8 +48,8 @@ var GroupChartMap;
     }
     GroupChartMap.getChartMap = getChartMap;
     function subtractSearchQuery(chartData, groupProvenanceId, groupId, searchQuery) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const facetStore = SearchQueryTools_1.SearchQueryTools.getFacetStoreFromGroupProvenance(groupProvenanceId);
             let subData;
             let partialFacets = [];

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.js

@@ -26,8 +26,8 @@ class RcsbGroupChartComponent extends react_1.default.Component {
         }
     }
     updateState() {
+        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
             const layout = (_a = this.props.facetLayoutGrid) !== null && _a !== void 0 ? _a : SearchQueryTools_1.SearchQueryTools.getFacetStoreFromGroupProvenance(this.props.groupProvenanceId).facetLayoutGrid;
             const chartMap = yield GroupChartTools_1.GroupChartMap.getChartMap(this.props.groupProvenanceId, this.props.groupId, this.props.searchQuery);
             if ((_b = this.props.additionalProperties) === null || _b === void 0 ? void 0 : _b.layoutConfig)

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.js

@@ -21,8 +21,8 @@ class RcsbGroupContentComponent extends react_1.default.Component {
         };
     }
     componentDidMount() {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             this.subscribe();
             const fullGroupMembers = (_a = (yield (0, RcsbGroupMembersComponent_1.searchRequest)(this.props.groupProvenanceId, this.props.groupId))) === null || _a === void 0 ? void 0 : _a.total_count;
             const subGroupMembers = (_b = (yield (0, RcsbGroupMembersComponent_1.searchRequest)(this.props.groupProvenanceId, this.props.groupId, this.props.searchQuery))) === null || _b === void 0 ? void 0 : _b.total_count;
@@ -47,8 +47,8 @@ class RcsbGroupContentComponent extends react_1.default.Component {
         return ((_a = this.props.displayNumber) !== null && _a !== void 0 ? _a : Operator_1.Operator.digitGrouping)(x);
     }
     updateGroupContent(o) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             const subGroupMembers = (_a = (yield (0, RcsbGroupMembersComponent_1.searchRequest)(this.props.groupProvenanceId, this.props.groupId, o.searchQuery))) === null || _a === void 0 ? void 0 : _a.total_count;
             if (subGroupMembers)
                 this.setState({ subGroupMembers, searchQuery: o.searchQuery });

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/Components/Slider.js

@@ -1,7 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Slider = void 0;
-exports.actionIcon = actionIcon;
+exports.actionIcon = exports.Slider = void 0;
 const tslib_1 = require("tslib");
 const jsx_runtime_1 = require("react/jsx-runtime");
 const react_1 = tslib_1.__importDefault(require("react"));
@@ -23,3 +22,4 @@ exports.Slider = Slider;
 function actionIcon(action) {
     return ((0, jsx_runtime_1.jsx)("span", { style: { cursor: "pointer" }, className: "h1 user-select-none", children: action == "prev" ? "❮" : "❯" }));
 }
+exports.actionIcon = actionIcon;

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js

@@ -75,8 +75,8 @@ class GroupMembersGrid extends react_1.default.Component {
 }
 exports.GroupMembersGrid = GroupMembersGrid;
 function searchRequest(groupProvenanceId, groupId, start, rows, searchQuery) {
+    var _a, _b, _c, _d, _e, _f, _g, _h;
     return tslib_1.__awaiter(this, void 0, void 0, function* () {
-        var _a, _b, _c, _d, _e, _f, _g, _h;
         return yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getSearchQuery({
             query: (searchQuery === null || searchQuery === void 0 ? void 0 : searchQuery.query) ? SearchQueryTools_1.SearchQueryTools.addGroupNodeToSearchQuery(groupProvenanceId, groupId, searchQuery.query) : SearchQueryTools_1.SearchQueryTools.searchGroupQuery(groupProvenanceId, groupId),
             request_options: {

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js

@@ -1,7 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbGroupMembersComponent = void 0;
-exports.searchRequest = searchRequest;
+exports.searchRequest = exports.RcsbGroupMembersComponent = void 0;
 const tslib_1 = require("tslib");
 const jsx_runtime_1 = require("react/jsx-runtime");
 const react_1 = tslib_1.__importDefault(require("react"));
@@ -91,6 +90,7 @@ function searchRequest(groupProvenanceId, groupId, searchQuery) {
         });
     });
 }
+exports.searchRequest = searchRequest;
 function mod(n, p) {
     const r = n % p;
     return r < 0 ? p + r : r;

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.d.ts

@@ -1,3 +1,4 @@
+/// <reference types="react" />
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 export declare class SearchQueryComponentFactory {

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js

@@ -45,8 +45,8 @@ var ResidueChartTools;
         });
     }
     function getInstanceCharts(instanceId) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const alignmentRequestContext = {
                 queryId: instanceId,
                 from: GqlTypes_1.SequenceReference.PdbInstance,

package/lib/commonjs/RcsbRequest/RcsbRequestContextManager.js

@@ -110,8 +110,8 @@ class RcsbRequestContextManager {
         });
     }
     getInterfaceToInstance(interfaceId) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const key = interfaceId;
             const assemblyId = interfaceId.split(TagDelimiter_1.TagDelimiter.instance)[0];
             if (this.interfaceToInstanceMap.get(key)) {

package/lib/commonjs/RcsbSeacrh/FacetTools.d.ts

@@ -21,32 +21,32 @@ export declare class FacetTools {
     static addChartDisplayConfig(chart: RcsbChartInterface, chartDisplayConfig: Partial<ChartDisplayConfigInterface>): {
         chartConfig: {
             chartDisplayConfig: Partial<ChartDisplayConfigInterface>;
-            mostPopulatedGroups?: number;
-            domainMinValue?: number;
-            domainMaxValue?: number;
-            domainEmptyBins?: boolean;
-            histogramBinIncrement?: number;
+            mostPopulatedGroups?: number | undefined;
+            domainMinValue?: number | undefined;
+            domainMaxValue?: number | undefined;
+            domainEmptyBins?: boolean | undefined;
+            histogramBinIncrement?: number | undefined;
             tickIncrement?: {
                 origin: number;
                 increment: number;
-            };
+            } | undefined;
             tickFormat?: {
-                domAxis?: (x: string | number) => string;
-                imgAxis?: (x: string | number) => string;
-            };
-            axisLabel?: string;
-            barClickCallback?: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").BarClickCallbackType;
-            sort?: (b: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface, a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface) => number;
-            tooltipText?: (a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataValueInterface) => string | string[] | undefined;
+                domAxis?: ((x: string | number) => string) | undefined;
+                imgAxis?: ((x: string | number) => string) | undefined;
+            } | undefined;
+            axisLabel?: string | undefined;
+            barClickCallback?: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").BarClickCallbackType | undefined;
+            sort?: ((b: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>, a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>) => number) | undefined;
+            tooltipText?: ((a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataValueInterface<any>) => string | string[] | undefined) | undefined;
         };
         data: ChartObjectInterface<any>[];
-        filters?: SearchFilter[];
+        filters?: SearchFilter[] | undefined;
         title?: string | undefined;
         attribute: RcsbSearchAttributeType;
         attributeName: string;
         chartType: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").ChartType;
         facetConfig?: import("./FacetStore/FacetMemberInterface").FacetConfigInterface | undefined;
-        contentType: "date" | "number" | "string";
+        contentType: "string" | "number" | "date";
     };
     private static includeMissingFacets;
     private static getFacetChartTypeFromAttribute;

package/lib/commonjs/RcsbSeacrh/SearchRequestProperty.js

@@ -38,8 +38,8 @@ class SearchRequestProperty {
     }
     //TODO this should be part of `SearchQueryTools`
     requestMembers(query) {
+        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
             return (_c = (_b = (_a = (yield this.getClient().request({
                 query: query.query,
                 request_options: {
@@ -52,8 +52,8 @@ class SearchRequestProperty {
     }
     //TODO this should be part of `SearchQueryTools`
     requestCount(query) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             return (_b = (_a = (yield this.getClient().request({
                 query: query.query,
                 request_options: {

package/lib/commonjs/RcsbUtils/TrackGenerators/AlignmentGlobalBindingSite.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.alignmentGlobalLigandBindingSite = alignmentGlobalLigandBindingSite;
+exports.alignmentGlobalLigandBindingSite = void 0;
 const tslib_1 = require("tslib");
 const RcsbAnnotationConstants_1 = require("../../RcsbAnnotationConfig/RcsbAnnotationConstants");
 const GroupExternalTrackBuilder_1 = require("./GroupExternalTrackBuilder");
@@ -13,8 +13,8 @@ function alignmentGlobalLigandBindingSite() {
     const groupTrackBuilder = (0, GroupExternalTrackBuilder_1.groupExternalTrackBuilder)();
     return {
         addTo(tracks) {
+            var _a;
             return tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _a;
                 if (Array.from(bindingSiteMap.values()).length > 0)
                     tracks.annotationTracks.unshift({
                         trackId: "annotationTrack_GLOBAL_BINDINGS",
@@ -33,15 +33,15 @@ function alignmentGlobalLigandBindingSite() {
             });
         },
         processAlignmentAndFeatures(data) {
+            var _a;
             return tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _a;
                 yield ((_a = groupTrackBuilder.processAlignmentAndFeatures) === null || _a === void 0 ? void 0 : _a.call(groupTrackBuilder, data));
                 processFeatures(data.annotations);
             });
         },
         filterFeatures(data) {
+            var _a, _b;
             return tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _a, _b;
                 const annotations = (_b = yield ((_a = groupTrackBuilder.filterFeatures) === null || _a === void 0 ? void 0 : _a.call(groupTrackBuilder, data))) !== null && _b !== void 0 ? _b : [];
                 annotations.forEach(ann => {
                     var _a;
@@ -100,3 +100,4 @@ function alignmentGlobalLigandBindingSite() {
         });
     }
 }
+exports.alignmentGlobalLigandBindingSite = alignmentGlobalLigandBindingSite;

package/lib/commonjs/RcsbUtils/TrackGenerators/BurialFraction.js

@@ -1,7 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.burialFraction = burialFraction;
-exports.burialFractionFilter = burialFractionFilter;
+exports.burialFractionFilter = exports.burialFraction = void 0;
 const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
 const lodash_1 = require("lodash");
 const FeatureType_1 = require("../../RcsbExport/FeatureType");
@@ -57,6 +56,7 @@ function burialFraction(annotations) {
     });
     return burialFractionOut;
 }
+exports.burialFraction = burialFraction;
 function burialFractionFilter(annotations) {
     return (0, lodash_1.cloneDeep)(annotations).map(ann => {
         var _a;
@@ -64,3 +64,4 @@ function burialFractionFilter(annotations) {
         return ann;
     }).filter(ann => { var _a, _b; return (((_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.length) !== null && _b !== void 0 ? _b : 0) > 0); });
 }
+exports.burialFractionFilter = burialFractionFilter;

package/lib/commonjs/RcsbUtils/TrackGenerators/BuriedResidues.js

@@ -1,7 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buriedResidues = buriedResidues;
-exports.buriedResiduesFilter = buriedResiduesFilter;
+exports.buriedResiduesFilter = exports.buriedResidues = void 0;
 const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
 const lodash_1 = require("lodash");
 const FeatureType_1 = require("../../RcsbExport/FeatureType");
@@ -42,6 +41,7 @@ function buriedResidues(annotations) {
     }
     return nBuried > 0 && buriedResidues ? [buriedResidues] : [];
 }
+exports.buriedResidues = buriedResidues;
 function buriedResiduesFilter(annotations) {
     return (0, lodash_1.cloneDeep)(annotations).map(ann => {
         var _a;
@@ -49,3 +49,4 @@ function buriedResiduesFilter(annotations) {
         return ann;
     }).filter(ann => { var _a, _b; return (((_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.length) !== null && _b !== void 0 ? _b : 0) > 0); });
 }
+exports.buriedResiduesFilter = buriedResiduesFilter;

package/lib/commonjs/RcsbUtils/TrackGenerators/GroupExternalTrackBuilder.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.groupExternalTrackBuilder = groupExternalTrackBuilder;
+exports.groupExternalTrackBuilder = void 0;
 const Logo_1 = require("./Logo");
 const RcsbAnnotationConstants_1 = require("../../RcsbAnnotationConfig/RcsbAnnotationConstants");
 const Assertions_1 = require("../Helpers/Assertions");
@@ -97,3 +97,4 @@ function groupExternalTrackBuilder() {
             }];
     }
 }
+exports.groupExternalTrackBuilder = groupExternalTrackBuilder;