@rcsb/rcsb-saguaro-app 6.2.2 → 6.2.3

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js

@@ -42,8 +42,8 @@ export var ResidueChartTools;
         });
     }
     function getInstanceCharts(instanceId) {
+        var _a, _b;
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const alignmentRequestContext = {
                 queryId: instanceId,
                 from: SequenceReference.PdbInstance,

package/lib/RcsbRequest/RcsbRequestContextManager.js

@@ -107,8 +107,8 @@ class RcsbRequestContextManager {
         });
     }
     getInterfaceToInstance(interfaceId) {
+        var _a, _b;
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const key = interfaceId;
             const assemblyId = interfaceId.split(TagDelimiter.instance)[0];
             if (this.interfaceToInstanceMap.get(key)) {

package/lib/RcsbSeacrh/FacetTools.d.ts

@@ -21,32 +21,32 @@ export declare class FacetTools {
     static addChartDisplayConfig(chart: RcsbChartInterface, chartDisplayConfig: Partial<ChartDisplayConfigInterface>): {
         chartConfig: {
             chartDisplayConfig: Partial<ChartDisplayConfigInterface>;
-            mostPopulatedGroups?: number;
-            domainMinValue?: number;
-            domainMaxValue?: number;
-            domainEmptyBins?: boolean;
-            histogramBinIncrement?: number;
+            mostPopulatedGroups?: number | undefined;
+            domainMinValue?: number | undefined;
+            domainMaxValue?: number | undefined;
+            domainEmptyBins?: boolean | undefined;
+            histogramBinIncrement?: number | undefined;
             tickIncrement?: {
                 origin: number;
                 increment: number;
-            };
+            } | undefined;
             tickFormat?: {
-                domAxis?: (x: string | number) => string;
-                imgAxis?: (x: string | number) => string;
-            };
-            axisLabel?: string;
-            barClickCallback?: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").BarClickCallbackType;
-            sort?: (b: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface, a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface) => number;
-            tooltipText?: (a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataValueInterface) => string | string[] | undefined;
+                domAxis?: ((x: string | number) => string) | undefined;
+                imgAxis?: ((x: string | number) => string) | undefined;
+            } | undefined;
+            axisLabel?: string | undefined;
+            barClickCallback?: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").BarClickCallbackType | undefined;
+            sort?: ((b: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>, a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>) => number) | undefined;
+            tooltipText?: ((a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataValueInterface<any>) => string | string[] | undefined) | undefined;
         };
         data: ChartObjectInterface<any>[];
-        filters?: SearchFilter[];
+        filters?: SearchFilter[] | undefined;
         title?: string | undefined;
         attribute: RcsbSearchAttributeType;
         attributeName: string;
         chartType: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").ChartType;
         facetConfig?: import("./FacetStore/FacetMemberInterface").FacetConfigInterface | undefined;
-        contentType: "date" | "number" | "string";
+        contentType: "string" | "number" | "date";
     };
     private static includeMissingFacets;
     private static getFacetChartTypeFromAttribute;

package/lib/RcsbSeacrh/SearchRequestProperty.js

@@ -35,8 +35,8 @@ class SearchRequestProperty {
     }
     //TODO this should be part of `SearchQueryTools`
     requestMembers(query) {
+        var _a, _b, _c;
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
             return (_c = (_b = (_a = (yield this.getClient().request({
                 query: query.query,
                 request_options: {
@@ -49,8 +49,8 @@ class SearchRequestProperty {
     }
     //TODO this should be part of `SearchQueryTools`
     requestCount(query) {
+        var _a, _b;
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             return (_b = (_a = (yield this.getClient().request({
                 query: query.query,
                 request_options: {

package/lib/RcsbUtils/TrackGenerators/AlignmentGlobalBindingSite.js

@@ -10,8 +10,8 @@ export function alignmentGlobalLigandBindingSite() {
     const groupTrackBuilder = groupExternalTrackBuilder();
     return {
         addTo(tracks) {
+            var _a;
             return __awaiter(this, void 0, void 0, function* () {
-                var _a;
                 if (Array.from(bindingSiteMap.values()).length > 0)
                     tracks.annotationTracks.unshift({
                         trackId: "annotationTrack_GLOBAL_BINDINGS",
@@ -30,15 +30,15 @@ export function alignmentGlobalLigandBindingSite() {
             });
         },
         processAlignmentAndFeatures(data) {
+            var _a;
             return __awaiter(this, void 0, void 0, function* () {
-                var _a;
                 yield ((_a = groupTrackBuilder.processAlignmentAndFeatures) === null || _a === void 0 ? void 0 : _a.call(groupTrackBuilder, data));
                 processFeatures(data.annotations);
             });
         },
         filterFeatures(data) {
+            var _a, _b;
             return __awaiter(this, void 0, void 0, function* () {
-                var _a, _b;
                 const annotations = (_b = yield ((_a = groupTrackBuilder.filterFeatures) === null || _a === void 0 ? void 0 : _a.call(groupTrackBuilder, data))) !== null && _b !== void 0 ? _b : [];
                 annotations.forEach(ann => {
                     var _a;

package/lib/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js

@@ -12,10 +12,10 @@ export function addUnmodeledTrackBuilder(unmodeledTrackBuilder, externalTrackBui
         ];
     });
     return Object.assign(Object.assign({}, externalTrackBuilder), { filterFeatures: (data) => __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
-            (_a = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _a === void 0 ? void 0 : _a.call(externalTrackBuilder, data);
+            var _c, _d, _e;
+            (_c = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _c === void 0 ? void 0 : _c.call(externalTrackBuilder, data);
             return trackBuilder({
-                annotations: (_c = yield ((_b = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _b === void 0 ? void 0 : _b.call(externalTrackBuilder, data))) !== null && _c !== void 0 ? _c : data.annotations,
+                annotations: (_e = yield ((_d = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _d === void 0 ? void 0 : _d.call(externalTrackBuilder, data))) !== null && _e !== void 0 ? _e : data.annotations,
                 rcsbContext: data.rcsbContext
             });
         }) });
@@ -38,8 +38,8 @@ export class UnmodeledTrackBuilder {
         return new UnobservedToolTip(this.unmodeledDescription);
     }
     buildUnobserved(annotations, rcsbContext) {
+        var _a;
         return __awaiter(this, void 0, void 0, function* () {
-            var _a;
             const nInstances = (yield rcsbRequestCtxManager.getEntityProperties((_a = rcsbContext.entityId) !== null && _a !== void 0 ? _a : "none"))[0].instances.length;
             const featurePositions = Array.from(annotations.filter(ann => {
                 var _a, _b, _c;

package/lib/commonjs/RcsbAnnotationConfig/RcsbAnnotationConfig.js

@@ -43,8 +43,8 @@ class RcsbAnnotationConfig {
     }
     //TODO refactor how title and type are defined. Can this be split in two different methods ?
     getAnnotationType(requestConfig, ann, feature) {
+        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
             const trackTitle = typeof requestConfig.trackTitle === "function" ? (yield requestConfig.trackTitle(ann, feature)) : undefined;
             const titleSuffix = typeof requestConfig.titleSuffix === "function" ? (yield requestConfig.titleSuffix(ann, feature)) : undefined;
             const typeSuffix = typeof requestConfig.typeSuffix === "function" ? (yield requestConfig.typeSuffix(ann, feature)) : undefined;

package/lib/commonjs/RcsbChartWeb/HistogramChartComponent.d.ts

@@ -1,3 +1,4 @@
+/// <reference types="react" />
 import { AbstractChartComponent } from "./AbsractChartComponent";
 export declare class HistogramChartComponent extends AbstractChartComponent {
     render(): JSX.Element;

package/lib/commonjs/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js

@@ -16,8 +16,8 @@ class AlignmentCollector {
         this.alignmentLengthSubject = new rxjs_1.Subject();
     }
     collect(requestConfig, filter) {
+        var _a, _b, _c, _d, _e, _f;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f;
             this.requestStatus = "pending";
             this.alignmentResponse = yield this.requestAlignment(requestConfig);
             const targetAlignment = (_b = (_a = this.alignmentResponse) === null || _a === void 0 ? void 0 : _a.target_alignment) !== null && _b !== void 0 ? _b : (_e = (_d = (_c = this.alignmentResponse) === null || _c === void 0 ? void 0 : _c.target_alignment_subset) === null || _d === void 0 ? void 0 : _d.edges) === null || _e === void 0 ? void 0 : _e.map(e => e === null || e === void 0 ? void 0 : e.node);

package/lib/commonjs/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js

@@ -13,8 +13,8 @@ class AnnotationCollector {
         this.annotationFeaturesSubject = new rxjs_1.Subject();
     }
     collect(requestConfig) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             this.requestStatus = "pending";
             this.annotationFeatures = yield this.requestAnnotations(requestConfig);
             if (typeof (requestConfig === null || requestConfig === void 0 ? void 0 : requestConfig.annotationGenerator) === "function") {

package/lib/commonjs/RcsbCollectTools/FeatureTools/FeatureTools.js

@@ -47,15 +47,15 @@ class FeatureTools {
     static mergeTrackBuilders(builderA, builderB) {
         return {
             addTo(tracks) {
+                var _a, _b;
                 return tslib_1.__awaiter(this, void 0, void 0, function* () {
-                    var _a, _b;
                     yield ((_a = builderA.addTo) === null || _a === void 0 ? void 0 : _a.call(builderA, tracks));
                     yield ((_b = builderB === null || builderB === void 0 ? void 0 : builderB.addTo) === null || _b === void 0 ? void 0 : _b.call(builderB, tracks));
                 });
             },
             processAlignmentAndFeatures(data) {
+                var _a, _b;
                 return tslib_1.__awaiter(this, void 0, void 0, function* () {
-                    var _a, _b;
                     yield ((_a = builderA.processAlignmentAndFeatures) === null || _a === void 0 ? void 0 : _a.call(builderA, data));
                     yield ((_b = builderB === null || builderB === void 0 ? void 0 : builderB.processAlignmentAndFeatures) === null || _b === void 0 ? void 0 : _b.call(builderB, data));
                 });

package/lib/commonjs/RcsbFvExamples/ExternalDataProvider.js

@@ -884,8 +884,8 @@ class RcsbStructuralAlignmentProvider {
     }
 }
 function alignmentTransform(alignment) {
+    var _a, _b;
     return tslib_1.__awaiter(this, void 0, void 0, function* () {
-        var _a, _b;
         const alignmentRef = mergeAlignments(alignment.results);
         const out = alignmentRef.buildAlignments();
         const instance_ids = (_a = out.target_alignment) === null || _a === void 0 ? void 0 : _a.map(ta => ta === null || ta === void 0 ? void 0 : ta.target_id);

package/lib/commonjs/RcsbFvExamples/utils/events.js

@@ -1,7 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getJsonFromUrl = getJsonFromUrl;
-exports.onLoad = onLoad;
+exports.onLoad = exports.getJsonFromUrl = void 0;
 function getJsonFromUrl() {
     const url = location.search;
     var query = url.substring(1);
@@ -12,8 +11,10 @@ function getJsonFromUrl() {
     });
     return result;
 }
+exports.getJsonFromUrl = getJsonFromUrl;
 function onLoad(f) {
     document.addEventListener("DOMContentLoaded", function (event) {
         f();
     });
 }
+exports.onLoad = onLoad;

package/lib/commonjs/RcsbFvUI/Components/FilterItemComponent.d.ts

@@ -1,3 +1,4 @@
+/// <reference types="react" />
 import { AbstractMenuItemComponent } from "../AbstractMenuItemComponent";
 interface FilterItemProps {
     elements: string[];

package/lib/commonjs/RcsbFvUI/Components/PaginationItemComponent.d.ts

@@ -1,3 +1,4 @@
+/// <reference types="react" />
 import { AbstractMenuItemComponent } from "../AbstractMenuItemComponent";
 export interface PaginationItemState {
     after: number;

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.js

@@ -38,8 +38,8 @@ class RcsbFvCoreBuilder {
      * @description This method implements a centralized point where PFVs are created. All PFV should be created using this method directly or through <CreateFvInterface.getPolymerEntityInstanceMapAndBuildFv>. In any case PFV should be built using a custom implementation.
      * */
     static createFv(createFvI) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             const elementId = createFvI.elementId;
             const fvModuleI = createFvI.fvModuleI;
             const config = createFvI.config;

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js

@@ -26,8 +26,8 @@ class RcsbFvGroupAlignmentBuilder {
         });
     }
     static buildGroupAlignmentFv(elementId, groupProvenance, groupId, query, additionalConfig) {
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             let entityCount = -1;
             let filterEntities = undefined;
             if (query && query.query) {

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.d.ts

@@ -1,3 +1,4 @@
+/// <reference types="react" />
 import { RcsbContextType, RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
 import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
 import { SelectOptionProps } from "../RcsbFvComponents/SelectButton";

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js

@@ -9,8 +9,8 @@ const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContex
 const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
 //TODO Find a better structure for change callbacks
 class RcsbFvInstanceBuilder {
-    static buildMultipleInstanceSequenceFv(elementFvId_1, elementEntrySelectId_1, elementInstanceSelectId_1, entryIdList_1) {
-        return tslib_1.__awaiter(this, arguments, void 0, function* (elementFvId, elementEntrySelectId, elementInstanceSelectId, entryIdList, config = {}, additionalConfig) {
+    static buildMultipleInstanceSequenceFv(elementFvId, elementEntrySelectId, elementInstanceSelectId, entryIdList, config = {}, additionalConfig) {
+        return tslib_1.__awaiter(this, void 0, void 0, function* () {
             RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.buildSelectButton(elementFvId, elementEntrySelectId, entryIdList.map(entryId => {
                 return {
                     label: entryId,
@@ -38,8 +38,8 @@ class RcsbFvInstanceBuilder {
         });
     }
     static buildSelectorInstanceFv(instanceList, elementFvId, elementSelectId, entryId, config, additionalConfig) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             const filteredInstanceList = instanceList.filter(i => (config.filterInstances == null || config.filterInstances.has(i.asymId)));
             const groupedInstances = new Map();
             filteredInstanceList.forEach((instance) => {

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js

@@ -7,8 +7,8 @@ const RcsbFvProteinSequence_1 = require("../RcsbFvModule/RcsbFvProteinSequence")
 const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
 class RcsbFvProteinSequenceBuilder {
     static buildPfv(elementId, config) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             const alignmentSource = (_a = config.alignmentSource) !== null && _a !== void 0 ? _a : config.reference;
             const sources = [GqlTypes_1.Source.Uniprot];
             if (config.reference == GqlTypes_1.SequenceReference.PdbEntity)

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js

@@ -12,8 +12,8 @@ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimite
 const ALL = "ALL";
 //TODO Find a better structure for change callbacks
 class RcsbFvUniprotBuilder {
-    static buildUniprotMultipleEntitySequenceFv(elementFvId_1, elementSelectId_1, upAcc_1) {
-        return tslib_1.__awaiter(this, arguments, void 0, function* (elementFvId, elementSelectId, upAcc, config = {}, additionalConfig) {
+    static buildUniprotMultipleEntitySequenceFv(elementFvId, elementSelectId, upAcc, config = {}, additionalConfig) {
+        return tslib_1.__awaiter(this, void 0, void 0, function* () {
             return new Promise((resolve, reject) => tslib_1.__awaiter(this, void 0, void 0, function* () {
                 let externalContext;
                 if (typeof config.beforeChangeCallback === "function")

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder.js

@@ -1,27 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.unmount = unmount;
-exports.buildMultipleAlignmentSequenceFv = buildMultipleAlignmentSequenceFv;
-exports.buildEntitySummaryFv = buildEntitySummaryFv;
-exports.buildSingleEntitySummaryFv = buildSingleEntitySummaryFv;
-exports.buildInstanceSequenceFv = buildInstanceSequenceFv;
-exports.buildMultipleInstanceSequenceFv = buildMultipleInstanceSequenceFv;
-exports.buildAssemblySequenceFv = buildAssemblySequenceFv;
-exports.buildUniprotFv = buildUniprotFv;
-exports.buildEntityFv = buildEntityFv;
-exports.buildInstanceFv = buildInstanceFv;
-exports.buildUniprotEntityFv = buildUniprotEntityFv;
-exports.buildUniprotEntityInstanceFv = buildUniprotEntityInstanceFv;
-exports.buildPfv = buildPfv;
-exports.buildPairwiseAlignment = buildPairwiseAlignment;
-exports.buildFullChromosome = buildFullChromosome;
-exports.buildEntryChromosome = buildEntryChromosome;
-exports.buildEntityChromosome = buildEntityChromosome;
-exports.buildChromosome = buildChromosome;
-exports.buildGroupFv = buildGroupFv;
-exports.buildSequenceIdentityAlignmentFv = buildSequenceIdentityAlignmentFv;
-exports.buildUniprotAlignmentFv = buildUniprotAlignmentFv;
-exports.buildDataProviderFv = buildDataProviderFv;
+exports.buildDataProviderFv = exports.buildUniprotAlignmentFv = exports.buildSequenceIdentityAlignmentFv = exports.buildGroupFv = exports.buildChromosome = exports.buildEntityChromosome = exports.buildEntryChromosome = exports.buildFullChromosome = exports.buildPairwiseAlignment = exports.buildPfv = exports.buildUniprotEntityInstanceFv = exports.buildUniprotEntityFv = exports.buildInstanceFv = exports.buildEntityFv = exports.buildUniprotFv = exports.buildAssemblySequenceFv = exports.buildMultipleInstanceSequenceFv = exports.buildInstanceSequenceFv = exports.buildSingleEntitySummaryFv = exports.buildEntitySummaryFv = exports.buildMultipleAlignmentSequenceFv = exports.unmount = void 0;
 const RcsbFvCoreBuilder_1 = require("./RcsbFvBuilder/RcsbFvCoreBuilder");
 const RcsbFvChromosomeBuilder_1 = require("./RcsbFvBuilder/RcsbFvChromosomeBuilder");
 const RcsbFvPairwiseAligmentBuilder_1 = require("./RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder");
@@ -37,66 +16,88 @@ const RcsbFvDataProviderBuilder_1 = require("./RcsbFvBuilder/RcsbFvDataProviderB
 function unmount(elementId) {
     RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.unmount(elementId);
 }
+exports.unmount = unmount;
 function buildMultipleAlignmentSequenceFv(elementFvId, elementSelectId, upAcc, config = {}, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotMultipleEntitySequenceFv(elementFvId, elementSelectId, upAcc, config, additionalConfig);
 }
+exports.buildMultipleAlignmentSequenceFv = buildMultipleAlignmentSequenceFv;
 function buildEntitySummaryFv(elementFvId, elementSelectId, entityId) {
     return RcsbFvEntityBuilder_1.RcsbFvEntityBuilder.buildEntitySummaryFv(elementFvId, elementSelectId, entityId);
 }
+exports.buildEntitySummaryFv = buildEntitySummaryFv;
 function buildSingleEntitySummaryFv(elementId, entityId) {
     return RcsbFvEntityBuilder_1.RcsbFvEntityBuilder.buildSingleEntitySummaryFv(elementId, entityId);
 }
+exports.buildSingleEntitySummaryFv = buildSingleEntitySummaryFv;
 function buildInstanceSequenceFv(elementFvId, elementSelectId, entryId, config = {}, additionalConfig) {
     return RcsbFvInstanceBuilder_1.RcsbFvInstanceBuilder.buildInstanceSequenceFv(elementFvId, elementSelectId, entryId, config, additionalConfig);
 }
+exports.buildInstanceSequenceFv = buildInstanceSequenceFv;
 function buildMultipleInstanceSequenceFv(elementFvId, elementEntrySelectId, elementInstanceSelectId, entryIdList, config = {}, additionalConfig) {
     return RcsbFvInstanceBuilder_1.RcsbFvInstanceBuilder.buildMultipleInstanceSequenceFv(elementFvId, elementEntrySelectId, elementInstanceSelectId, entryIdList, config, additionalConfig);
 }
+exports.buildMultipleInstanceSequenceFv = buildMultipleInstanceSequenceFv;
 function buildAssemblySequenceFv(elementFvId, elementSelectAssemblyId, elementSelectInstanceId, entryId, onAsseblyChangeCallback, onInstanceChangeCallback) {
     return RcsbFvAssemblyBuilder_1.RcsbFvAssemblyBuilder.buildAssemblySequenceFv(elementFvId, elementSelectAssemblyId, elementSelectInstanceId, entryId, onAsseblyChangeCallback, onInstanceChangeCallback);
 }
+exports.buildAssemblySequenceFv = buildAssemblySequenceFv;
 function buildUniprotFv(elementId, upAcc, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotFv(elementId, upAcc, additionalConfig);
 }
+exports.buildUniprotFv = buildUniprotFv;
 function buildEntityFv(elementId, entityId, additionalConfig) {
     return RcsbFvEntityBuilder_1.RcsbFvEntityBuilder.buildEntityFv(elementId, entityId, additionalConfig);
 }
+exports.buildEntityFv = buildEntityFv;
 function buildInstanceFv(elementId, instanceId, additionalConfig) {
     return RcsbFvInstanceBuilder_1.RcsbFvInstanceBuilder.buildInstanceFv(elementId, instanceId, additionalConfig);
 }
+exports.buildInstanceFv = buildInstanceFv;
 function buildUniprotEntityFv(elementId, upAcc, entityId, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotEntityFv(elementId, upAcc, entityId, additionalConfig);
 }
+exports.buildUniprotEntityFv = buildUniprotEntityFv;
 function buildUniprotEntityInstanceFv(elementId, upAcc, entityId, instanceId, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotEntityInstanceFv(elementId, upAcc, entityId, instanceId, additionalConfig);
 }
+exports.buildUniprotEntityInstanceFv = buildUniprotEntityInstanceFv;
 function buildPfv(elementId, config) {
     return RcsbFvProteinSequenceBuilder_1.RcsbFvProteinSequenceBuilder.buildPfv(elementId, config);
 }
+exports.buildPfv = buildPfv;
 function buildPairwiseAlignment(elementId, psa, additionalConfig) {
     return RcsbFvPairwiseAligmentBuilder_1.RcsbFvPairwiseAligmentBuilder.buildPairwiseAlignment(elementId, psa, additionalConfig);
 }
+exports.buildPairwiseAlignment = buildPairwiseAlignment;
 function buildFullChromosome(elementFvId, chrId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildFullChromosome(elementFvId, chrId);
 }
+exports.buildFullChromosome = buildFullChromosome;
 function buildEntryChromosome(elementFvId, entitySelectId, chromosomeSelectId, entryId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildEntryChromosome(elementFvId, entitySelectId, chromosomeSelectId, entryId);
 }
+exports.buildEntryChromosome = buildEntryChromosome;
 function buildEntityChromosome(elementFvId, elementSelectId, entityId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildEntityChromosome(elementFvId, elementSelectId, entityId);
 }
+exports.buildEntityChromosome = buildEntityChromosome;
 function buildChromosome(elementFvId, entityId, chrId, elementSelectId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildChromosome(elementFvId, chrId, elementSelectId);
 }
+exports.buildChromosome = buildChromosome;
 function buildGroupFv(elementId, groupProvenanceId, groupId, query, additionalConfig) {
     RcsbFvGroupTabsBuilder_1.RcsbFvGroupTabsBuilder.buildGroupTabs(elementId, groupProvenanceId, groupId, query, additionalConfig);
 }
+exports.buildGroupFv = buildGroupFv;
 function buildSequenceIdentityAlignmentFv(elementId, groupId, query, additionalConfig) {
     return RcsbFvGroupAlignmentBuilder_1.RcsbFvGroupAlignmentBuilder.buildGroupAlignmentFv(elementId, DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, query, additionalConfig);
 }
+exports.buildSequenceIdentityAlignmentFv = buildSequenceIdentityAlignmentFv;
 function buildUniprotAlignmentFv(elementId, upAcc, query, additionalConfig) {
     return RcsbFvGroupAlignmentBuilder_1.RcsbFvGroupAlignmentBuilder.buildGroupAlignmentFv(elementId, DwEnums_1.GroupProvenanceId.ProvenanceMatchingUniprotAccession, upAcc, query, additionalConfig);
 }
+exports.buildUniprotAlignmentFv = buildUniprotAlignmentFv;
 function buildDataProviderFv(elementId, dataProvider, additionalConfig) {
     return RcsbFvDataProviderBuilder_1.RcsbFvDataProviderBuilder.buildFv(elementId, Object.assign(Object.assign({}, additionalConfig), { dataProvider: Object.assign({}, dataProvider) }));
 }
+exports.buildDataProviderFv = buildDataProviderFv;

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/ComponentsManager.d.ts

@@ -1,3 +1,4 @@
+/// <reference types="react" />
 import { GroupedOptionsInterface, SelectOptionInterface, SelectOptionProps } from "./SelectButton";
 export interface SelectButtonConfigInterface {
     addTitle?: boolean;

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/MountableComponent.d.ts

@@ -1,6 +1,6 @@
 import { ReactNode } from "react";
 export declare class MountableComponent {
-    private readonly element;
+    private static readonly ROOT;
     private root;
     constructor(element: HTMLElement);
     render(node: ReactNode): void;

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/MountableComponent.js

@@ -4,8 +4,10 @@ exports.MountableComponent = void 0;
 const client_1 = require("react-dom/client");
 class MountableComponent {
     constructor(element) {
-        this.element = element;
-        this.root = (0, client_1.createRoot)(this.element);
+        var _a;
+        if (!MountableComponent.ROOT.has(element.id))
+            MountableComponent.ROOT.set(element.id, (0, client_1.createRoot)(element));
+        this.root = (_a = MountableComponent.ROOT.get(element.id)) !== null && _a !== void 0 ? _a : (0, client_1.createRoot)(element);
     }
     render(node) {
         this.unmount();
@@ -16,3 +18,4 @@ class MountableComponent {
     }
 }
 exports.MountableComponent = MountableComponent;
+MountableComponent.ROOT = new Map();

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js

@@ -8,18 +8,18 @@ class AlignmentBlockFactory {
         this.trackConfigModifier = trackModifier;
     }
     getBlock(alignmentRequestContext, alignmentData) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             alignmentRequestContext = Object.assign(Object.assign({}, alignmentRequestContext), { querySequence: (_a = alignmentData.query_sequence) !== null && _a !== void 0 ? _a : undefined });
             if (!alignmentData.target_alignment)
                 return [];
             return (yield Promise.all(alignmentData.target_alignment.map((alignment, index) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _a, _b;
-                if (alignmentRequestContext.filterByTargetContains != null && !((_a = alignment === null || alignment === void 0 ? void 0 : alignment.target_id) === null || _a === void 0 ? void 0 : _a.includes(alignmentRequestContext.filterByTargetContains)))
+                var _b, _c;
+                if (alignmentRequestContext.filterByTargetContains != null && !((_b = alignment === null || alignment === void 0 ? void 0 : alignment.target_id) === null || _b === void 0 ? void 0 : _b.includes(alignmentRequestContext.filterByTargetContains)))
                     return;
                 if ((alignment === null || alignment === void 0 ? void 0 : alignment.target_sequence) == null)
                     return;
-                return Object.assign(Object.assign({}, yield this.trackFactory.getTrack(alignmentRequestContext, alignment)), yield ((_b = this.trackConfigModifier) === null || _b === void 0 ? void 0 : _b.call(this, alignmentRequestContext, alignment, alignmentData, index)));
+                return Object.assign(Object.assign({}, yield this.trackFactory.getTrack(alignmentRequestContext, alignment)), yield ((_c = this.trackConfigModifier) === null || _c === void 0 ? void 0 : _c.call(this, alignmentRequestContext, alignment, alignmentData, index)));
             })))).filter((x) => x != undefined);
         });
     }

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js

@@ -36,8 +36,8 @@ class AnnotationBlockManager {
         ].flat();
     }
     processAnnotations(requestConfig, data) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             yield Promise.all(data.map(ann => {
                 var _a, _b;
                 return (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.map((feature) => tslib_1.__awaiter(this, void 0, void 0, function* () {
@@ -49,8 +49,8 @@ class AnnotationBlockManager {
         });
     }
     addFeature(requestConfig, ann, feature) {
+        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e;
             if (feature.type && ((_a = this.rcsbAnnotationConfig.getConfig(feature.type)) === null || _a === void 0 ? void 0 : _a.ignore))
                 return;
             const type = yield this.rcsbAnnotationConfig.getAnnotationType(requestConfig, ann, feature);

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js

@@ -15,8 +15,8 @@ class SequenceTrackFactory {
         this.trackTitleFactory = trackTitleFactory !== null && trackTitleFactory !== void 0 ? trackTitleFactory : new SequenceTrackTitleFactory_1.SequenceTrackTitleFactory(entityInstanceTranslator);
     }
     getTrack(alignmentQueryContext, querySequence) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
             assertDefined(queryId);
             return {

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js

@@ -12,8 +12,8 @@ class AnnotationsTrackTitleFactory {
         });
     }
     getTrackTitleFlagColor(trackManager) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             const provenance = Array.from((_b = (_a = trackManager.getConfig()) === null || _a === void 0 ? void 0 : _a.provenanceList) !== null && _b !== void 0 ? _b : []);
             if (provenance.length == 1
                 &&
@@ -26,8 +26,8 @@ class AnnotationsTrackTitleFactory {
         });
     }
     getTrackTitlePrefix(trackManager) {
+        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
             return (_b = (_a = trackManager.getConfig()) === null || _a === void 0 ? void 0 : _a.prefix) !== null && _b !== void 0 ? _b : "";
         });
     }

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js

@@ -15,8 +15,8 @@ class SequenceTrackTitleFactory {
         this.entityInstanceTranslator = entityInstanceTranslator;
     }
     getTrackTitle(alignmentQueryContext) {
+        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
             let rowTitle;
             if (!alignmentQueryContext.excludeFirstRowLink && alignmentQueryContext.from === GqlTypes_1.SequenceReference.Uniprot) {
                 rowTitle = {
@@ -48,14 +48,14 @@ class SequenceTrackTitleFactory {
         });
     }
     getTrackTitlePrefix(alignmentQueryContext) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             return (alignmentQueryContext.from && !alignmentQueryContext.from.includes("PDB")) ? alignmentQueryContext.from.replace("_", " ") + " " + TagDelimiter_1.TagDelimiter.sequenceTitle : ((_a = alignmentQueryContext.sequencePrefix) !== null && _a !== void 0 ? _a : "");
         });
     }
     getTrackTitleFlagColor(alignmentQueryContext) {
+        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
             const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
             assertDefined(queryId), assertDefined(alignmentQueryContext.from);
             return TrackUtils_1.TrackUtils.getProvenanceConfigFormTarget(queryId, alignmentQueryContext.from).color;

package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js

@@ -79,8 +79,8 @@ class GroupPfvTabs extends react_1.default.Component {
         });
     }
     renderPositionalFeatureViewer(tabKey) {
+        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e;
             switch (tabKey) {
                 case ALIGNMENT:
                     this.featureViewers.set(tabKey, yield GroupPfvApp_1.GroupPfvApp.alignment(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_a = this.entityCount) !== null && _a !== void 0 ? _a : 0, Object.assign(Object.assign({ page: { first: 50, after: "0" } }, this.props.additionalConfig), { alignmentFilter: this.filterEntities })));