@rbalchii/anchor-engine 4.8.0 → 4.8.1

package/engine/dist/routes/v1/system.js

@@ -1,6 +1,147 @@
 import { db } from '../../core/db.js';
 import { getState, clearState } from '../../services/scribe/scribe.js';
+import { PATHS, PROJECT_ROOT } from '../../config/paths.js';
+import { config } from '../../config/index.js';
+// Track server control state
+let serverStartTime = null;
+let isServerShuttingDown = false;
 export function setupSystemRoutes(app) {
+    // GET /health - Docker health check endpoint
+    // Returns 200 if DB is connected and system is healthy
+    app.get('/health', async (_req, res) => {
+        try {
+            // Check database connectivity
+            const result = await db.run('SELECT 1 as healthy');
+            const dbHealthy = result.rows?.[0]?.healthy === 1;
+            // Check critical directories exist
+            const fs = await import('fs');
+            const criticalDirs = [
+                PATHS.INBOX_DIR,
+                PATHS.EXTERNAL_INBOX_DIR,
+                PATHS.CONTEXT_DIR
+            ];
+            const dirsExist = await Promise.all(criticalDirs.map(async (dir) => {
+                try {
+                    await fs.promises.access(dir, fs.constants.R_OK);
+                    return true;
+                }
+                catch {
+                    return false;
+                }
+            }));
+            const allDirsOk = dirsExist.every(d => d);
+            if (dbHealthy && allDirsOk) {
+                res.status(200).json({
+                    status: 'healthy',
+                    timestamp: new Date().toISOString(),
+                    checks: {
+                        database: 'connected',
+                        directories: 'accessible'
+                    }
+                });
+            }
+            else {
+                res.status(503).json({
+                    status: 'unhealthy',
+                    timestamp: new Date().toISOString(),
+                    checks: {
+                        database: dbHealthy ? 'connected' : 'disconnected',
+                        directories: allDirsOk ? 'accessible' : 'some missing'
+                    }
+                });
+            }
+        }
+        catch (error) {
+            res.status(503).json({
+                status: 'unhealthy',
+                timestamp: new Date().toISOString(),
+                error: error.message,
+                checks: {
+                    database: 'error',
+                    directories: 'unknown'
+                }
+            });
+        }
+    });
+    // POST /v1/system/start - Start/restart the engine
+    // Note: This is primarily for MCP agent control
+    app.post('/v1/system/start', async (req, res) => {
+        try {
+            // Check if already running
+            if (serverStartTime && !isServerShuttingDown) {
+                res.json({
+                    status: 'already_running',
+                    message: 'Server is already running',
+                    started_at: serverStartTime.toISOString(),
+                    uptime_seconds: Math.floor((Date.now() - serverStartTime.getTime()) / 1000)
+                });
+                return;
+            }
+            // Server is starting or restarting
+            serverStartTime = new Date();
+            isServerShuttingDown = false;
+            res.json({
+                status: 'starting',
+                message: 'Server start initiated',
+                started_at: serverStartTime.toISOString()
+            });
+            // Note: Actual server restart would require process management
+            // This endpoint is primarily for MCP agent coordination
+            console.log('[System] Server start requested via API');
+        }
+        catch (error) {
+            console.error('System start error:', error);
+            res.status(500).json({ error: 'Failed to start system' });
+        }
+    });
+    // POST /v1/system/stop - Graceful shutdown
+    app.post('/v1/system/stop', async (req, res) => {
+        try {
+            const { timeout = 30000 } = req.body; // Default 30 second timeout
+            isServerShuttingDown = true;
+            console.log(`[System] Graceful shutdown requested (timeout: ${timeout}ms)`);
+            // Stop accepting new requests
+            res.json({
+                status: 'shutting_down',
+                message: 'Graceful shutdown initiated',
+                timeout_ms: timeout,
+                timestamp: new Date().toISOString()
+            });
+            // Note: Actual shutdown would require process management
+            // This endpoint is primarily for MCP agent coordination
+            console.log('[System] Server stop requested via API');
+            // In a full implementation, this would:
+            // 1. Stop accepting new connections
+            // 2. Wait for current operations to complete (up to timeout)
+            // 3. Close database connections
+            // 4. Exit process
+        }
+        catch (error) {
+            console.error('System stop error:', error);
+            res.status(500).json({ error: 'Failed to stop system' });
+        }
+    });
+    // GET /v1/system/server-info - Get server metadata
+    app.get('/v1/system/server-info', async (req, res) => {
+        try {
+            res.json({
+                status: 'success',
+                server_info: {
+                    is_running: serverStartTime !== null && !isServerShuttingDown,
+                    is_shutting_down: isServerShuttingDown,
+                    started_at: serverStartTime?.toISOString() || null,
+                    uptime_seconds: serverStartTime ? Math.floor((Date.now() - serverStartTime.getTime()) / 1000) : 0,
+                    port: config.PORT,
+                    host: config.HOST,
+                    version: '4.8.2'
+                }
+            });
+        }
+        catch (error) {
+            console.error('Server info error:', error);
+            res.status(500).json({ error: 'Failed to get server info' });
+        }
+    });
     // GET /v1/stats - System statistics (anchor_stats tool)
     app.get('/v1/stats', async (_req, res) => {
         try {
@@ -26,6 +167,124 @@ export function setupSystemRoutes(app) {
             res.status(500).json({ error: 'Failed to retrieve stats' });
         }
     });
+    // GET /v1/system/ingest-status - Get ingestion progress
+    app.get('/v1/system/ingest-status', async (_req, res) => {
+        try {
+            const { systemStatus } = await import('../../services/system-status.js');
+            const ingestStatus = systemStatus.getIngestionStatus();
+            res.json({
+                status: 'success',
+                state: ingestStatus.status,
+                currentJob: ingestStatus.currentJob,
+                lastCompleted: ingestStatus.lastCompleted,
+                queueDepth: ingestStatus.queueDepth
+            });
+        }
+        catch (error) {
+            console.error('Ingest status retrieval error:', error);
+            res.status(500).json({ error: 'Failed to retrieve ingest status' });
+        }
+    });
+    // POST /v1/system/wait-for-ingest - Block until ingestion completes
+    app.post('/v1/system/wait-for-ingest', async (req, res) => {
+        try {
+            const { timeout = 300000, job_id } = req.body; // Default 5 minute timeout
+            const { systemStatus } = await import('../../services/system-status.js');
+            const startTime = Date.now();
+            const pollInterval = 500; // Check every 500ms
+            while (true) {
+                const status = systemStatus.getIngestionStatus();
+                // Check if ingestion is complete or errored
+                if (status.status === 'idle' || status.status === 'complete' || status.status === 'error') {
+                    res.json({
+                        status: 'complete',
+                        final_status: status.status,
+                        duration_ms: Date.now() - startTime,
+                        job: status.currentJob
+                    });
+                    return;
+                }
+                // Check timeout
+                if (Date.now() - startTime > timeout) {
+                    res.status(408).json({
+                        status: 'timeout',
+                        duration_ms: Date.now() - startTime,
+                        message: `Ingestion did not complete within ${timeout}ms`
+                    });
+                    return;
+                }
+                // Wait before next poll
+                await new Promise(resolve => setTimeout(resolve, pollInterval));
+            }
+        }
+        catch (error) {
+            console.error('Wait for ingest error:', error);
+            res.status(500).json({ error: 'Failed to wait for ingestion' });
+        }
+    });
+    // GET /v1/config/ingestion - Get current ingestion config
+    app.get('/v1/config/ingestion', async (_req, res) => {
+        try {
+            const { config } = await import('../../config/index.js');
+            res.json({
+                status: 'success',
+                config: config.INGESTION
+            });
+        }
+        catch (error) {
+            console.error('Get ingestion config error:', error);
+            res.status(500).json({ error: 'Failed to get ingestion config' });
+        }
+    });
+    // POST /v1/config/ingestion - Update ingestion config
+    app.post('/v1/config/ingestion', async (req, res) => {
+        try {
+            const { config } = await import('../../config/index.js');
+            const updates = req.body;
+            // Validate and apply updates
+            if (updates.concept_density && !['low', 'medium', 'high'].includes(updates.concept_density)) {
+                res.status(400).json({ error: 'Invalid concept_density. Must be low, medium, or high' });
+                return;
+            }
+            if (updates.dedup_strength && !['light', 'medium', 'aggressive'].includes(updates.dedup_strength)) {
+                res.status(400).json({ error: 'Invalid dedup_strength. Must be light, medium, or aggressive' });
+                return;
+            }
+            if (updates.ingestion_profile && !['code', 'notes', 'chat', 'default'].includes(updates.ingestion_profile)) {
+                res.status(400).json({ error: 'Invalid ingestion_profile. Must be code, notes, chat, or default' });
+                return;
+            }
+            if (updates.tag_threshold !== undefined && (updates.tag_threshold < 0 || updates.tag_threshold > 1)) {
+                res.status(400).json({ error: 'tag_threshold must be between 0 and 1' });
+                return;
+            }
+            if (updates.token_budget_default !== undefined && updates.token_budget_default < 0) {
+                res.status(400).json({ error: 'token_budget_default must be positive' });
+                return;
+            }
+            // Apply updates to runtime config
+            if (updates.concept_density)
+                config.INGESTION.CONCEPT_DENSITY = updates.concept_density;
+            if (updates.tag_threshold !== undefined)
+                config.INGESTION.TAG_THRESHOLD = updates.tag_threshold;
+            if (updates.dedup_strength)
+                config.INGESTION.DEDUP_STRENGTH = updates.dedup_strength;
+            if (updates.token_budget_default !== undefined)
+                config.INGESTION.TOKEN_BUDGET_DEFAULT = updates.token_budget_default;
+            if (updates.ingestion_profile)
+                config.INGESTION.INGESTION_PROFILE = updates.ingestion_profile;
+            console.log('[Config] Ingestion config updated:', updates);
+            res.json({
+                status: 'success',
+                message: 'Ingestion config updated',
+                config: config.INGESTION
+            });
+        }
+        catch (error) {
+            console.error('Update ingestion config error:', error);
+            res.status(500).json({ error: 'Failed to update ingestion config' });
+        }
+    });
     // Scribe State Endpoints
     app.get('/v1/scribe/state', async (_req, res) => {
         try {
@@ -100,17 +359,57 @@ export function setupSystemRoutes(app) {
     // POST /v1/system/paths - Add a new path to watch
     app.post('/v1/system/paths', async (req, res) => {
         try {
-            const { path } = req.body;
-            if (!path) {
+            const { path: newPath } = req.body;
+            if (!newPath) {
                 res.status(400).json({ error: 'Path is required' });
                 return;
             }
+            // Security: Validate path is within allowed directories
+            const pathModule = await import('path');
+            const fs = await import('fs');
+            // Resolve to absolute path
+            const resolvedPath = pathModule.resolve(newPath);
+            // Ensure path exists
+            try {
+                await fs.promises.access(resolvedPath, fs.constants.R_OK);
+            }
+            catch {
+                res.status(400).json({ error: 'Path does not exist or is not readable' });
+                return;
+            }
+            // Security: Ensure path is within PROJECT_ROOT or is an absolute path outside
+            // We allow paths outside PROJECT_ROOT but they must be explicitly absolute
+            if (!pathModule.isAbsolute(newPath)) {
+                res.status(400).json({
+                    error: 'Path must be absolute for security reasons',
+                    hint: 'Use an absolute path starting with / or C:\\'
+                });
+                return;
+            }
+            // Normalize both paths for comparison
+            const normalizedPath = resolvedPath.replace(/\\/g, '/');
+            const normalizedProjectRoot = PROJECT_ROOT.replace(/\\/g, '/');
+            // Allowlist: paths must be either within PROJECT_ROOT or explicitly absolute
+            const isWithinProjectRoot = normalizedPath.startsWith(normalizedProjectRoot + '/') ||
+                normalizedPath === normalizedProjectRoot;
+            if (!isWithinProjectRoot) {
+                // For paths outside project root, require explicit confirmation
+                res.status(200).json({
+                    status: 'warning',
+                    message: 'Path is outside PROJECT_ROOT. Ensure this is intentional.',
+                    path: resolvedPath,
+                    security_note: 'External paths are allowed but should be trusted directories only'
+                });
+                // Still allow the path but log it
+                console.warn('[Security] Adding external watch path:', resolvedPath);
+            }
             const { addWatchPath } = await import('../../services/ingest/watchdog.js');
-            const success = await addWatchPath(path);
+            const success = await addWatchPath(resolvedPath);
             res.status(200).json({
                 status: success ? 'success' : 'failed',
-                message: success ? `Now watching: ${path}` : 'Failed to add path',
-                path
+                message: success ? `Now watching: ${resolvedPath}` : 'Failed to add path',
+                path: resolvedPath,
+                within_project_root: isWithinProjectRoot
             });
         }
         catch (e) {
@@ -276,7 +575,7 @@ export function setupSystemRoutes(app) {
             const path = await import('path');
             // Security: Canonicalize paths to prevent symlink traversal attacks
             // Get realpath of base directory (inbox/distilled)
-            const baseDir = path.resolve(process.cwd(), 'inbox', 'distilled');
+            const baseDir = path.resolve(PATHS.INBOX_DIR, 'distilled');
             let realBaseDir;
             try {
                 realBaseDir = await fs.promises.realpath(baseDir);

package/engine/dist/routes/v1/system.js.map

@@ -1 +1 @@
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package/engine/dist/routes/v1/tags.js

@@ -47,7 +47,7 @@ export function setupTagsRoutes(app) {
             // Create a placeholder tag entry to register the bucket
             // This makes the bucket visible in the list
             const placeholderTag = `_bucket_${bucketName}`;
-            await db.run(`INSERT INTO tags (atom_id, tag, bucket) VALUES ($1, $2, $3)
+            await db.run(`INSERT INTO tags (atom_id, tag, bucket) VALUES ($1, $2, $3)
          ON CONFLICT (atom_id, tag, bucket) DO NOTHING`, ['__system__', placeholderTag, bucketName]);
             // Store bucket metadata in engrams
             const bucketMetadata = {
@@ -56,7 +56,7 @@ export function setupTagsRoutes(app) {
                 created_at: new Date().toISOString(),
                 source: 'manual'
             };
-            await db.run(`INSERT INTO engrams (key, value) VALUES ($1, $2)
+            await db.run(`INSERT INTO engrams (key, value) VALUES ($1, $2)
          ON CONFLICT (key) DO UPDATE SET value = EXCLUDED.value`, [`bucket_meta_${bucketName}`, JSON.stringify(bucketMetadata)]);
             console.log(`[API] Created bucket: ${bucketName} at location: ${location || 'inbox'}`);
             res.status(201).json({

package/engine/dist/services/backup/backup-restore.js

@@ -46,11 +46,11 @@ export async function restoreFromBackup(filename) {
             stats.source_count++;
         }
         if (placeholders.length > 0) {
-            await db.run(`INSERT INTO sources (path, hash, total_atoms, last_ingest)
-                 VALUES ${placeholders.join(', ')}
-                 ON CONFLICT (path) DO UPDATE SET
-                   hash = EXCLUDED.hash,
-                   total_atoms = EXCLUDED.total_atoms,
+            await db.run(`INSERT INTO sources (path, hash, total_atoms, last_ingest)
+                 VALUES ${placeholders.join(', ')}
+                 ON CONFLICT (path) DO UPDATE SET
+                   hash = EXCLUDED.hash,
+                   total_atoms = EXCLUDED.total_atoms,
                    last_ingest = EXCLUDED.last_ingest`, params);
         }
     }
@@ -68,21 +68,21 @@ export async function restoreFromBackup(filename) {
             stats.memory_count++;
         }
         if (placeholders.length > 0) {
-            await db.run(`INSERT INTO atoms (id, timestamp, content, source_path, source_id, sequence, type, hash, buckets, tags, epochs, provenance, simhash, embedding)
-                 VALUES ${placeholders.join(', ')}
-                 ON CONFLICT (id) DO UPDATE SET
-                   content = EXCLUDED.content,
-                   timestamp = EXCLUDED.timestamp,
-                   source_path = EXCLUDED.source_path,
-                   source_id = EXCLUDED.source_id,
-                   sequence = EXCLUDED.sequence,
-                   type = EXCLUDED.type,
-                   hash = EXCLUDED.hash,
-                   buckets = EXCLUDED.buckets,
-                   tags = EXCLUDED.tags,
-                   epochs = EXCLUDED.epochs,
-                   provenance = EXCLUDED.provenance,
-                   simhash = EXCLUDED.simhash,
+            await db.run(`INSERT INTO atoms (id, timestamp, content, source_path, source_id, sequence, type, hash, buckets, tags, epochs, provenance, simhash, embedding)
+                 VALUES ${placeholders.join(', ')}
+                 ON CONFLICT (id) DO UPDATE SET
+                   content = EXCLUDED.content,
+                   timestamp = EXCLUDED.timestamp,
+                   source_path = EXCLUDED.source_path,
+                   source_id = EXCLUDED.source_id,
+                   sequence = EXCLUDED.sequence,
+                   type = EXCLUDED.type,
+                   hash = EXCLUDED.hash,
+                   buckets = EXCLUDED.buckets,
+                   tags = EXCLUDED.tags,
+                   epochs = EXCLUDED.epochs,
+                   provenance = EXCLUDED.provenance,
+                   simhash = EXCLUDED.simhash,
                    embedding = EXCLUDED.embedding`, params);
         }
     }
@@ -100,9 +100,9 @@ export async function restoreFromBackup(filename) {
             stats.engram_count++;
         }
         if (placeholders.length > 0) {
-            await db.run(`INSERT INTO engrams (key, value)
-                 VALUES ${placeholders.join(', ')}
-                 ON CONFLICT (key) DO UPDATE SET
+            await db.run(`INSERT INTO engrams (key, value)
+                 VALUES ${placeholders.join(', ')}
+                 ON CONFLICT (key) DO UPDATE SET
                    value = EXCLUDED.value`, params);
         }
     }

package/engine/dist/services/backup/backup.js

@@ -232,15 +232,15 @@ export async function restoreBackup(filename) {
                 stats.memory_count++;
             }
             if (placeholders.length > 0) {
-                await db.run(`INSERT INTO atoms (id, timestamp, content, source_path, source_id, sequence, type, hash, buckets, tags, epochs, provenance, simhash, embedding)
-                     VALUES ${placeholders.join(', ')}
-                     ON CONFLICT (id) DO UPDATE SET
-                       content = EXCLUDED.content, timestamp = EXCLUDED.timestamp,
-                       source_path = EXCLUDED.source_path, source_id = EXCLUDED.source_id,
-                       sequence = EXCLUDED.sequence, type = EXCLUDED.type,
-                       hash = EXCLUDED.hash, buckets = EXCLUDED.buckets,
-                       tags = EXCLUDED.tags, epochs = EXCLUDED.epochs,
-                       provenance = EXCLUDED.provenance, simhash = EXCLUDED.simhash,
+                await db.run(`INSERT INTO atoms (id, timestamp, content, source_path, source_id, sequence, type, hash, buckets, tags, epochs, provenance, simhash, embedding)
+                     VALUES ${placeholders.join(', ')}
+                     ON CONFLICT (id) DO UPDATE SET
+                       content = EXCLUDED.content, timestamp = EXCLUDED.timestamp,
+                       source_path = EXCLUDED.source_path, source_id = EXCLUDED.source_id,
+                       sequence = EXCLUDED.sequence, type = EXCLUDED.type,
+                       hash = EXCLUDED.hash, buckets = EXCLUDED.buckets,
+                       tags = EXCLUDED.tags, epochs = EXCLUDED.epochs,
+                       provenance = EXCLUDED.provenance, simhash = EXCLUDED.simhash,
                        embedding = EXCLUDED.embedding`, params);
             }
         }
@@ -254,10 +254,10 @@ export async function restoreBackup(filename) {
                 stats.source_count++;
             }
             if (placeholders.length > 0) {
-                await db.run(`INSERT INTO sources (path, hash, total_atoms, last_ingest)
-                     VALUES ${placeholders.join(', ')}
-                     ON CONFLICT (path) DO UPDATE SET
-                       hash = EXCLUDED.hash, total_atoms = EXCLUDED.total_atoms,
+                await db.run(`INSERT INTO sources (path, hash, total_atoms, last_ingest)
+                     VALUES ${placeholders.join(', ')}
+                     ON CONFLICT (path) DO UPDATE SET
+                       hash = EXCLUDED.hash, total_atoms = EXCLUDED.total_atoms,
                        last_ingest = EXCLUDED.last_ingest`, params);
             }
         }
@@ -271,7 +271,7 @@ export async function restoreBackup(filename) {
                 stats.engram_count++;
             }
             if (placeholders.length > 0) {
-                await db.run(`INSERT INTO engrams (key, value) VALUES ${placeholders.join(', ')}
+                await db.run(`INSERT INTO engrams (key, value) VALUES ${placeholders.join(', ')}
                      ON CONFLICT (key) DO UPDATE SET value = EXCLUDED.value`, params);
             }
         }

package/engine/dist/services/distillation/radial-distiller.d.ts

@@ -51,6 +51,7 @@ export interface RadialDistillResult {
     };
     provenance: {
         source_compounds: string[];
+        unique_sources: number;
         distilled_at: string;
         parameters: RadialDistillRequest;
     };

package/engine/dist/services/distillation/radial-distiller.d.ts.map

@@ -1 +1 @@
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