@rbalchii/anchor-engine 4.8.0 → 4.8.1

package/engine/dist/commands/distill.js

@@ -21,27 +21,27 @@ import { config } from '../config/index.js';
 async function main() {
     const args = process.argv.slice(2);
     if (args.includes('--help') || args.includes('-h')) {
-        console.log(`
-Graph Distillation CLI - Standard 133 Radial Distillation
-
-Usage:
-  node --loader ts-node/esm src/commands/distill.ts [options] [seed_query]
-
-Options:
-  --seed-ids, -s    Comma-separated compound IDs to start from
-  --radius, -r      Inflation radius (default: 2000)
-  --strict          Strict normalization (default)
-  --lenient         Lenient normalization
-  --output, -o      Output file path
-  --yaml            Output as YAML
-  --json            Output as JSON
-  --export, -e      Export to inbox/distilled/ folder
-
-Examples:
-  node src/commands/distill.ts
-  node src/commands/distill.ts --radius 5000
-  node src/commands/distill.ts --strict --export
-  node src/commands/distill.ts --lenient --yaml
+        console.log(`
+Graph Distillation CLI - Standard 133 Radial Distillation
+
+Usage:
+  node --loader ts-node/esm src/commands/distill.ts [options] [seed_query]
+
+Options:
+  --seed-ids, -s    Comma-separated compound IDs to start from
+  --radius, -r      Inflation radius (default: 2000)
+  --strict          Strict normalization (default)
+  --lenient         Lenient normalization
+  --output, -o      Output file path
+  --yaml            Output as YAML
+  --json            Output as JSON
+  --export, -e      Export to inbox/distilled/ folder
+
+Examples:
+  node src/commands/distill.ts
+  node src/commands/distill.ts --radius 5000
+  node src/commands/distill.ts --strict --export
+  node src/commands/distill.ts --lenient --yaml
     `);
         process.exit(0);
     }

package/engine/dist/config/index.d.ts

@@ -109,6 +109,13 @@ interface Config {
         SEARCH_RESULTS_BATCH_SIZE: number;
         ENABLE_STREAMING_RESULTS: boolean;
     };
+    INGESTION: {
+        CONCEPT_DENSITY: 'low' | 'medium' | 'high';
+        TAG_THRESHOLD: number;
+        DEDUP_STRENGTH: 'light' | 'medium' | 'aggressive';
+        TOKEN_BUDGET_DEFAULT: number;
+        INGESTION_PROFILE: 'code' | 'notes' | 'chat' | 'default';
+    };
 }
 export declare const config: Config;
 export default config;

package/engine/dist/config/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/config/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAYH,UAAU,MAAM;IAEd,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,YAAY,EAAE,MAAM,CAAC;IAGrB,YAAY,EAAE,OAAO,GAAG,QAAQ,CAAC;IACjC,cAAc,EAAE,MAAM,CAAC;IACvB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,aAAa,EAAE,MAAM,CAAC;IAGtB,yBAAyB,EAAE,MAAM,CAAC;IAClC,oBAAoB,EAAE,MAAM,CAAC;IAC7B,WAAW,EAAE,MAAM,CAAC;IAEpB,mBAAmB,EAAE,MAAM,CAAC;IAG5B,cAAc,EAAE,MAAM,CAAC;IACvB,mBAAmB,EAAE,MAAM,CAAC;IAC5B,sBAAsB,EAAE,MAAM,CAAC;IAG/B,mBAAmB,EAAE,MAAM,CAAC;IAC5B,8BAA8B,EAAE,MAAM,CAAC;IACvC,mBAAmB,EAAE,MAAM,EAAE,CAAC;IAG9B,wBAAwB,EAAE,MAAM,CAAC;IACjC,sBAAsB,EAAE,MAAM,CAAC;IAG/B,KAAK,EAAE;QACL,OAAO,EAAE,OAAO,CAAC;QACjB,GAAG,EAAE,MAAM,CAAC;QACZ,GAAG,EAAE,MAAM,CAAC;KACb,CAAC;IACF,KAAK,EAAE;QACL,OAAO,EAAE,OAAO,CAAC;QACjB,GAAG,EAAE,MAAM,CAAC;QACZ,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC;KACd,CAAC;IAGF,QAAQ,EAAE;QACR,eAAe,EAAE,OAAO,CAAC;QACzB,aAAa,EAAE,OAAO,CAAC;QACvB,IAAI,EAAE,OAAO,CAAC;QACd,SAAS,EAAE,OAAO,CAAC;QACnB,MAAM,EAAE,OAAO,CAAC;QAChB,SAAS,EAAE,OAAO,CAAC;KACpB,CAAC;IAGF,MAAM,EAAE;QACN,QAAQ,EAAE,MAAM,CAAC;QACjB,kBAAkB,EAAE,OAAO,CAAC;QAC5B,SAAS,EAAE,MAAM,EAAE,CAAC;QACpB,iBAAiB,EAAE,MAAM,CAAC;QAC1B,eAAe,EAAE,MAAM,CAAC;QACxB,eAAe,EAAE,MAAM,CAAC;QACxB,WAAW,EAAE,MAAM,CAAC;KACrB,CAAC;IAGF,MAAM,EAAE;QACN,aAAa,EAAE,MAAM,CAAC;QACtB,IAAI,EAAE;YACJ,IAAI,EAAE,MAAM,CAAC;YACb,QAAQ,EAAE,MAAM,CAAC;YACjB,UAAU,EAAE,MAAM,CAAC;YACnB,UAAU,EAAE,MAAM,CAAC;SACpB,CAAC;QACF,YAAY,EAAE;YACZ,IAAI,EAAE,MAAM,CAAC;YACb,QAAQ,EAAE,MAAM,CAAC;YACjB,UAAU,EAAE,MAAM,CAAC;YACnB,UAAU,EAAE,MAAM,CAAC;SACpB,CAAC;QACF,MAAM,EAAE;YACN,IAAI,EAAE,MAAM,CAAC;YACb,SAAS,EAAE,MAAM,CAAC;YAClB,QAAQ,EAAE,MAAM,CAAC;YACjB,UAAU,EAAE,MAAM,CAAC;YACnB,UAAU,EAAE,MAAM,CAAC;SACpB,CAAC;KACH,CAAC;IAGF,QAAQ,EAAE;QACR,kBAAkB,EAAE,MAAM,CAAC;QAC3B,gBAAgB,EAAE,MAAM,CAAC;QACzB,2BAA2B,EAAE,MAAM,CAAC;QACpC,yBAAyB,EAAE,MAAM,CAAC;KACnC,CAAC;IAGF,MAAM,EAAE;QACN,mBAAmB,EAAE,MAAM,CAAC;QAC5B,wBAAwB,EAAE,MAAM,CAAC;QACjC,oBAAoB,EAAE,MAAM,CAAC;QAC7B,wBAAwB,EAAE,MAAM,CAAC;QACjC,yBAAyB,EAAE,MAAM,CAAC;KACnC,CAAC;IAGF,QAAQ,EAAE;QACR,eAAe,EAAE,OAAO,CAAC;KAC1B,CAAC;IAGF,oBAAoB,EAAE;QACpB,uBAAuB,EAAE,MAAM,CAAC;QAChC,qBAAqB,EAAE,MAAM,CAAC;QAC9B,eAAe,EAAE,MAAM,CAAC;QACxB,qBAAqB,EAAE,MAAM,CAAC;QAC9B,sBAAsB,EAAE,MAAM,CAAC;QAC/B,gBAAgB,EAAE,OAAO,CAAC;QAC1B,cAAc,EAAE,OAAO,CAAC;KACzB,CAAC;IAGF,MAAM,EAAE;QACN,gBAAgB,EAAE,MAAM,CAAC;QACzB,iBAAiB,EAAE,MAAM,CAAC;QAC1B,eAAe,EAAE,MAAM,CAAC;QACxB,iBAAiB,EAAE,MAAM,CAAC;QAC1B,yBAAyB,EAAE,MAAM,CAAC;QAClC,wBAAwB,EAAE,OAAO,CAAC;KACnC,CAAC;IAGF,SAAS,EAAE;QACT,eAAe,EAAE,KAAK,GAAG,QAAQ,GAAG,MAAM,CAAC;QAC3C,aAAa,EAAE,MAAM,CAAC;QACtB,cAAc,EAAE,OAAO,GAAG,QAAQ,GAAG,YAAY,CAAC;QAClD,oBAAoB,EAAE,MAAM,CAAC;QAC7B,iBAAiB,EAAE,MAAM,GAAG,OAAO,GAAG,MAAM,GAAG,SAAS,CAAC;KAC1D,CAAC;CACH;AA0TD,eAAO,MAAM,MAAM,QAAe,CAAC;AAEnC,eAAe,MAAM,CAAC"}

package/engine/dist/config/index.js

@@ -149,6 +149,15 @@ const DEFAULT_CONFIG = {
         SEARCH_RESULTS_BATCH_SIZE: parseInt(process.env['ANCHOR_SEARCH_RESULTS_BATCH_SIZE'] || '20', 10),
         // Enable streaming results for memory efficiency (default: false)
         ENABLE_STREAMING_RESULTS: process.env['ANCHOR_ENABLE_STREAMING_RESULTS'] === 'true'
+    },
+    // Ingestion Configuration (Agent-Controlled)
+    // Configurable ingestion behavior for different content types
+    INGESTION: {
+        CONCEPT_DENSITY: process.env['ANCHOR_CONCEPT_DENSITY'] || 'medium',
+        TAG_THRESHOLD: parseFloat(process.env['ANCHOR_TAG_THRESHOLD'] || '0.7'),
+        DEDUP_STRENGTH: process.env['ANCHOR_DEDUP_STRENGTH'] || 'medium',
+        TOKEN_BUDGET_DEFAULT: parseInt(process.env['ANCHOR_TOKEN_BUDGET_DEFAULT'] || '2000', 10),
+        INGESTION_PROFILE: process.env['ANCHOR_INGESTION_PROFILE'] || 'default'
     }
 };
 // Configuration loader
@@ -313,6 +322,19 @@ function loadConfig() {
                 if (userSettings.memory.enable_streaming_results !== undefined)
                     loadedConfig.MEMORY.ENABLE_STREAMING_RESULTS = userSettings.memory.enable_streaming_results;
             }
+            // Load Ingestion Configuration (Agent-Controlled)
+            if (userSettings.ingestion) {
+                if (userSettings.ingestion.concept_density)
+                    loadedConfig.INGESTION.CONCEPT_DENSITY = userSettings.ingestion.concept_density;
+                if (userSettings.ingestion.tag_threshold !== undefined)
+                    loadedConfig.INGESTION.TAG_THRESHOLD = userSettings.ingestion.tag_threshold;
+                if (userSettings.ingestion.dedup_strength)
+                    loadedConfig.INGESTION.DEDUP_STRENGTH = userSettings.ingestion.dedup_strength;
+                if (userSettings.ingestion.token_budget_default !== undefined)
+                    loadedConfig.INGESTION.TOKEN_BUDGET_DEFAULT = userSettings.ingestion.token_budget_default;
+                if (userSettings.ingestion.ingestion_profile)
+                    loadedConfig.INGESTION.INGESTION_PROFILE = userSettings.ingestion.ingestion_profile;
+            }
         }
         catch (e) {
             console.error(`[Config] Failed to parse user_settings.json:`, e);

package/engine/dist/config/index.js.map

@@ -1 +1 @@
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package/engine/dist/config/paths.d.ts

@@ -16,13 +16,13 @@ export declare const PATHS: {
     MODELS_DIR: string;
     DIST_DIR: string;
     BACKUPS_DIR: string;
-    MIRRORED_BRAIN_DIR: string;
     LOGS_DIR: string;
     CONFIG_FILE: string;
     USER_SETTINGS: string;
     DATABASE_FILE: string;
     INBOX_DIR: string;
     EXTERNAL_INBOX_DIR: string;
+    MIRRORED_BRAIN_DIR: string;
     LIBRARIES_DIR: string;
     MIRRORS_DIR: string;
     SESSIONS_DIR: string;

package/engine/dist/config/paths.js

@@ -24,13 +24,13 @@ export const PATHS = {
     MODELS_DIR,
     DIST_DIR,
     BACKUPS_DIR: path.join(PROJECT_ROOT, 'backups'),
-    MIRRORED_BRAIN_DIR: path.join(PROJECT_ROOT, 'mirrored_brain'),
     LOGS_DIR: path.join(PROJECT_ROOT, 'logs'),
     CONFIG_FILE: path.join(PROJECT_ROOT, 'sovereign.yaml'),
     USER_SETTINGS: path.join(PROJECT_ROOT, 'user_settings.json'),
     DATABASE_FILE: path.join(CONTEXT_DIR, 'context.db'),
-    INBOX_DIR: path.join(PROJECT_ROOT, 'inbox'),
-    EXTERNAL_INBOX_DIR: path.join(PROJECT_ROOT, 'external-inbox'),
+    INBOX_DIR: path.join(PROJECT_ROOT, 'local-data', 'inbox'),
+    EXTERNAL_INBOX_DIR: path.join(PROJECT_ROOT, 'local-data', 'external-inbox'),
+    MIRRORED_BRAIN_DIR: path.join(PROJECT_ROOT, 'local-data', 'mirrored_brain'),
     LIBRARIES_DIR: path.join(CONTEXT_DIR, 'libraries'),
     MIRRORS_DIR: path.join(CONTEXT_DIR, 'mirrors'),
     SESSIONS_DIR: path.join(CONTEXT_DIR, 'sessions'),

package/engine/dist/config/paths.js.map

@@ -1 +1 @@
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package/engine/dist/core/db.js

@@ -152,12 +152,12 @@ export class Database {
         }
         // Create Synonyms table for automatic query expansion
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS synonyms (
-          term TEXT PRIMARY KEY,
-          synonyms TEXT,
-          created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS synonyms (
+          term TEXT PRIMARY KEY,
+          synonyms TEXT,
+          created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+        );
       `);
             console.log("[DB] 'synonyms' table initialized.");
         }
@@ -169,18 +169,18 @@ export class Database {
         try {
             // Create sequence for vector_ids
             await this.run('CREATE SEQUENCE IF NOT EXISTS vector_id_seq START 1;');
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS atoms (
-          id TEXT PRIMARY KEY,
-          content TEXT,
-          source_path TEXT,
-          timestamp REAL,
-          simhash TEXT,
-          embedding TEXT,
-          vector_id BIGINT,
-          provenance TEXT,
-          created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS atoms (
+          id TEXT PRIMARY KEY,
+          content TEXT,
+          source_path TEXT,
+          timestamp REAL,
+          simhash TEXT,
+          embedding TEXT,
+          vector_id BIGINT,
+          provenance TEXT,
+          created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+        );
       `);
             console.log("[DB] 'atoms' table initialized.");
             // Add missing columns if they don't exist (for existing databases)
@@ -226,13 +226,13 @@ export class Database {
         }
         // Create the tags table (The "Nervous System")
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS tags (
-          atom_id TEXT,
-          tag TEXT,
-          bucket TEXT,
-          PRIMARY KEY (atom_id, tag, bucket)
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS tags (
+          atom_id TEXT,
+          tag TEXT,
+          bucket TEXT,
+          PRIMARY KEY (atom_id, tag, bucket)
+        );
       `);
             // Create indexes - optimized for PhysicsWalker queries
             try {
@@ -262,14 +262,14 @@ export class Database {
         }
         // Create Edges table (The Graph Connections)
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS edges (
-          source_id TEXT,
-          target_id TEXT,
-          relation TEXT,
-          weight REAL,
-          PRIMARY KEY (source_id, target_id, relation)
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS edges (
+          source_id TEXT,
+          target_id TEXT,
+          relation TEXT,
+          weight REAL,
+          PRIMARY KEY (source_id, target_id, relation)
+        );
       `);
             console.log("[DB] 'edges' table initialized.");
         }
@@ -279,13 +279,13 @@ export class Database {
         }
         // Create Source Table (Container)
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS sources (
-          path TEXT PRIMARY KEY,
-          hash TEXT,
-          total_atoms INTEGER,
-          last_ingest REAL
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS sources (
+          path TEXT PRIMARY KEY,
+          hash TEXT,
+          total_atoms INTEGER,
+          last_ingest REAL
+        );
       `);
             console.log("[DB] 'sources' table initialized.");
         }
@@ -295,23 +295,23 @@ export class Database {
         }
         // Create molecules table (The Document Sentences)
         try {
-            await this.run(`
-          CREATE TABLE IF NOT EXISTS molecules (
-            id TEXT PRIMARY KEY,
-            content TEXT,
-            compound_id TEXT,
-            sequence INTEGER,
-            start_byte INTEGER,
-            end_byte INTEGER,
-            type TEXT,
-            numeric_value REAL,
-            numeric_unit TEXT,
-            molecular_signature TEXT,
-            embedding TEXT,
-            timestamp REAL,
-            tags JSONB,
-            entities JSONB
-          );
+            await this.run(`
+          CREATE TABLE IF NOT EXISTS molecules (
+            id TEXT PRIMARY KEY,
+            content TEXT,
+            compound_id TEXT,
+            sequence INTEGER,
+            start_byte INTEGER,
+            end_byte INTEGER,
+            type TEXT,
+            numeric_value REAL,
+            numeric_unit TEXT,
+            molecular_signature TEXT,
+            embedding TEXT,
+            timestamp REAL,
+            tags JSONB,
+            entities JSONB
+          );
         `);
             // Add indices for molecules
             try {
@@ -341,18 +341,18 @@ export class Database {
         }
         // Create Compounds table (Atomic Architecture)
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS compounds (
-          id TEXT PRIMARY KEY,
-          compound_body TEXT,
-          path TEXT,
-          timestamp REAL,
-          provenance TEXT,
-          molecular_signature TEXT,
-          atoms TEXT,
-          molecules TEXT,
-          embedding TEXT
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS compounds (
+          id TEXT PRIMARY KEY,
+          compound_body TEXT,
+          path TEXT,
+          timestamp REAL,
+          provenance TEXT,
+          molecular_signature TEXT,
+          atoms TEXT,
+          molecules TEXT,
+          embedding TEXT
+        );
       `);
             console.log("[DB] 'compounds' table initialized.");
         }
@@ -362,11 +362,11 @@ export class Database {
         }
         // Create Engrams table (Lexical Sidecar)
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS engrams (
-          key TEXT PRIMARY KEY,
-          value TEXT
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS engrams (
+          key TEXT PRIMARY KEY,
+          value TEXT
+        );
       `);
             console.log("[DB] 'engrams' table initialized.");
         }
@@ -377,17 +377,17 @@ export class Database {
         // Create Atom Positions table (Lazy Molecule Inflation)
         // Tracks where atoms (keywords) appear in compounds for radial inflation
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS atom_positions (
-          compound_id TEXT NOT NULL,
-          atom_label TEXT NOT NULL,
-          byte_offset INTEGER NOT NULL,
-          PRIMARY KEY (compound_id, atom_label, byte_offset)
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS atom_positions (
+          compound_id TEXT NOT NULL,
+          atom_label TEXT NOT NULL,
+          byte_offset INTEGER NOT NULL,
+          PRIMARY KEY (compound_id, atom_label, byte_offset)
+        );
       `);
-            await this.run(`
-        CREATE INDEX IF NOT EXISTS idx_atom_positions_label 
-        ON atom_positions(atom_label);
+            await this.run(`
+        CREATE INDEX IF NOT EXISTS idx_atom_positions_label 
+        ON atom_positions(atom_label);
       `);
             console.log("[DB] 'atom_positions' table initialized.");
         }
@@ -397,15 +397,15 @@ export class Database {
         }
         // Create Summary Nodes Table (Dreamer Abstractions)
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS summary_nodes (
-          id TEXT PRIMARY KEY,
-          type TEXT,
-          content TEXT,
-          span_start REAL,
-          span_end REAL,
-          embedding TEXT
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS summary_nodes (
+          id TEXT PRIMARY KEY,
+          type TEXT,
+          content TEXT,
+          span_start REAL,
+          span_end REAL,
+          embedding TEXT
+        );
       `);
             console.log("[DB] 'summary_nodes' table initialized.");
         }
@@ -415,29 +415,29 @@ export class Database {
         }
         // Create GitHub Repos Table (Standard 115: GitHub Repository Ingestion)
         try {
-            await this.run(`
-        CREATE TABLE IF NOT EXISTS github_repos (
-          id TEXT PRIMARY KEY,
-          owner TEXT NOT NULL,
-          repo TEXT NOT NULL,
-          branch TEXT DEFAULT 'main',
-          bucket TEXT NOT NULL,
-          github_url TEXT NOT NULL,
-          last_synced_at TIMESTAMP,
-          last_sync_status TEXT,
-          last_error TEXT,
-          total_files INTEGER DEFAULT 0,
-          total_atoms INTEGER DEFAULT 0,
-          total_size_bytes INTEGER DEFAULT 0,
-          created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
-          updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
-        );
+            await this.run(`
+        CREATE TABLE IF NOT EXISTS github_repos (
+          id TEXT PRIMARY KEY,
+          owner TEXT NOT NULL,
+          repo TEXT NOT NULL,
+          branch TEXT DEFAULT 'main',
+          bucket TEXT NOT NULL,
+          github_url TEXT NOT NULL,
+          last_synced_at TIMESTAMP,
+          last_sync_status TEXT,
+          last_error TEXT,
+          total_files INTEGER DEFAULT 0,
+          total_atoms INTEGER DEFAULT 0,
+          total_size_bytes INTEGER DEFAULT 0,
+          created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+          updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+        );
       `);
             console.log("[DB] 'github_repos' table initialized.");
             // Create index for owner/repo lookup
-            await this.run(`
-        CREATE INDEX IF NOT EXISTS idx_github_repos_owner_repo 
-        ON github_repos(owner, repo);
+            await this.run(`
+        CREATE INDEX IF NOT EXISTS idx_github_repos_owner_repo 
+        ON github_repos(owner, repo);
       `);
         }
         catch (e) {
@@ -446,10 +446,10 @@ export class Database {
         }
         // Create FTS index for content search
         try {
-            await this.run(`
-        CREATE INDEX IF NOT EXISTS idx_atoms_content_gin
-        ON atoms
-        USING GIN(to_tsvector('simple', content));
+            await this.run(`
+        CREATE INDEX IF NOT EXISTS idx_atoms_content_gin
+        ON atoms
+        USING GIN(to_tsvector('simple', content));
       `);
             console.log("[DB] FTS index created for content search.");
         }
@@ -457,9 +457,9 @@ export class Database {
             console.warn("[DB] Could not create FTS index:", e.message);
             // Try creating a simpler index if GIN fails
             try {
-                await this.run(`
-          CREATE INDEX IF NOT EXISTS idx_atoms_content_text
-          ON atoms (content);
+                await this.run(`
+          CREATE INDEX IF NOT EXISTS idx_atoms_content_text
+          ON atoms (content);
         `);
                 console.log("[DB] Text index created as fallback.");
             }
@@ -469,10 +469,10 @@ export class Database {
         }
         // Create FTS index for molecules content search (Tag-Walker anchor stage)
         try {
-            await this.run(`
-        CREATE INDEX IF NOT EXISTS idx_molecules_content_gin
-        ON molecules
-        USING GIN(to_tsvector('simple', content));
+            await this.run(`
+        CREATE INDEX IF NOT EXISTS idx_molecules_content_gin
+        ON molecules
+        USING GIN(to_tsvector('simple', content));
       `);
             console.log("[DB] FTS index created for molecules content search.");
         }
@@ -480,9 +480,9 @@ export class Database {
             console.warn("[DB] Could not create molecules FTS index:", e.message);
             // Try creating a simpler index if GIN fails
             try {
-                await this.run(`
-          CREATE INDEX IF NOT EXISTS idx_molecules_content_text
-          ON molecules (content);
+                await this.run(`
+          CREATE INDEX IF NOT EXISTS idx_molecules_content_text
+          ON molecules (content);
         `);
                 console.log("[DB] Molecules text index created as fallback.");
             }
@@ -492,10 +492,10 @@ export class Database {
         }
         // Create JSONB GIN Index (Crystal Atom Optimization)
         try {
-            await this.run(`
-        CREATE INDEX IF NOT EXISTS idx_atoms_payload_gin
-        ON atoms
-        USING GIN (payload);
+            await this.run(`
+        CREATE INDEX IF NOT EXISTS idx_atoms_payload_gin
+        ON atoms
+        USING GIN (payload);
       `);
             console.log("[DB] GIN index created for payload (Crystal Atom).");
         }

package/engine/dist/mcp/server.d.ts

@@ -0,0 +1,44 @@
+/**
+ * Anchor Engine MCP Server
+ *
+ * Exposes Anchor Engine functionality as MCP tools for agent consumption.
+ * This allows Qwen Code agents and other MCP clients to control Anchor Engine
+ * programmatically.
+ */
+import { Server } from '@modelcontextprotocol/sdk/server/index.js';
+declare const server: Server<{
+    method: string;
+    params?: {
+        [x: string]: unknown;
+        _meta?: {
+            [x: string]: unknown;
+            progressToken?: string | number | undefined;
+            "io.modelcontextprotocol/related-task"?: {
+                taskId: string;
+            } | undefined;
+        } | undefined;
+    } | undefined;
+}, {
+    method: string;
+    params?: {
+        [x: string]: unknown;
+        _meta?: {
+            [x: string]: unknown;
+            progressToken?: string | number | undefined;
+            "io.modelcontextprotocol/related-task"?: {
+                taskId: string;
+            } | undefined;
+        } | undefined;
+    } | undefined;
+}, {
+    [x: string]: unknown;
+    _meta?: {
+        [x: string]: unknown;
+        progressToken?: string | number | undefined;
+        "io.modelcontextprotocol/related-task"?: {
+            taskId: string;
+        } | undefined;
+    } | undefined;
+}>;
+export { server };
+//# sourceMappingURL=server.d.ts.map

package/engine/dist/mcp/server.d.ts.map

@@ -0,0 +1 @@
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