@quiltdata/benchling-webhook 0.7.2-20251106T010445Z → 0.7.3-20251106T131511Z

package/dist/lib/xdg-cli-wrapper.js

@@ -1,289 +0,0 @@
-"use strict";
-/**
- * TypeScript Wrapper for Python XDG CLI
- *
- * Provides type-safe access to the Python XDG configuration CLI from TypeScript.
- * This ensures consistency by delegating all XDG operations to the Python implementation.
- *
- * @module lib/xdg-cli-wrapper
- */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.XDGCLIWrapper = exports.XDGCLIError = void 0;
-const child_process_1 = require("child_process");
-const path = __importStar(require("path"));
-/**
- * Base class for XDG CLI errors
- */
-class XDGCLIError extends Error {
-    constructor(message, command, exitCode, stderr) {
-        super(message);
-        this.command = command;
-        this.exitCode = exitCode;
-        this.stderr = stderr;
-        this.name = "XDGCLIError";
-    }
-}
-exports.XDGCLIError = XDGCLIError;
-/**
- * Get the path to the Python CLI script
- */
-function getCLIPath() {
-    return path.join(__dirname, "..", "docker", "scripts", "benchling-webhook-config");
-}
-/**
- * Execute Python CLI command
- */
-function executeCLI(args, options = {}) {
-    const cliPath = getCLIPath();
-    const command = `python3 ${cliPath} ${args.join(" ")}`;
-    try {
-        const result = (0, child_process_1.execSync)(command, {
-            encoding: "utf-8",
-            stdio: options.captureStdout ? "pipe" : ["pipe", "pipe", "inherit"],
-            maxBuffer: 10 * 1024 * 1024, // 10MB buffer
-        });
-        return result;
-    }
-    catch (error) {
-        const err = error;
-        const stderr = err.stderr?.toString() || err.message || "Unknown error";
-        const exitCode = err.status || 1;
-        throw new XDGCLIError(`XDG CLI command failed: ${command}`, command, exitCode, stderr);
-    }
-}
-/**
- * XDG CLI Wrapper Class
- *
- * Provides TypeScript interface to Python XDG CLI operations.
- */
-class XDGCLIWrapper {
-    /**
-     * Read configuration from XDG storage
-     *
-     * @param options - Read options
-     * @returns Configuration data
-     */
-    static read(options = {}) {
-        const args = ["read"];
-        if (options.profile) {
-            args.push("--profile", options.profile);
-        }
-        if (options.type) {
-            args.push("--type", options.type);
-        }
-        if (options.validate) {
-            args.push("--validate");
-        }
-        args.push("--compact"); // Always use compact for parsing
-        const output = executeCLI(args, { captureStdout: true, verbose: options.verbose });
-        return JSON.parse(output);
-    }
-    /**
-     * Write configuration to XDG storage
-     *
-     * @param data - Configuration data to write
-     * @param options - Write options
-     */
-    static write(data, options = {}) {
-        const args = ["write", JSON.stringify(data)];
-        if (options.profile) {
-            args.push("--profile", options.profile);
-        }
-        if (options.type) {
-            args.push("--type", options.type);
-        }
-        if (options.validate !== false) {
-            args.push("--validate");
-        }
-        if (options.backup !== false) {
-            args.push("--backup");
-        }
-        executeCLI(args, { verbose: options.verbose });
-    }
-    /**
-     * Merge data into existing configuration
-     *
-     * @param data - Data to merge
-     * @param options - Merge options
-     */
-    static merge(data, options = {}) {
-        const args = ["merge", JSON.stringify(data)];
-        if (options.profile) {
-            args.push("--profile", options.profile);
-        }
-        if (options.type) {
-            args.push("--type", options.type);
-        }
-        if (options.validate !== false) {
-            args.push("--validate");
-        }
-        if (options.backup !== false) {
-            args.push("--backup");
-        }
-        executeCLI(args, { verbose: options.verbose });
-    }
-    /**
-     * Validate configuration against schema
-     *
-     * @param options - Validation options
-     * @returns True if valid, false otherwise
-     */
-    static validate(options = {}) {
-        const args = ["validate"];
-        if (options.profile) {
-            args.push("--profile", options.profile);
-        }
-        if (options.type) {
-            args.push("--type", options.type);
-        }
-        try {
-            executeCLI(args, { verbose: options.verbose });
-            return true;
-        }
-        catch (error) {
-            if (error instanceof XDGCLIError) {
-                return false;
-            }
-            throw error;
-        }
-    }
-    /**
-     * List all available profiles
-     *
-     * @returns Array of profile names
-     */
-    static listProfiles() {
-        const output = executeCLI(["list"], { captureStdout: true });
-        // Parse output: "Available profiles:\n  default\n  dev\n..."
-        const lines = output.split("\n").filter((line) => line.trim() && !line.includes("Available profiles"));
-        return lines.map((line) => line.trim().split(/\s+/)[0]);
-    }
-    /**
-     * Export configuration as JSON
-     *
-     * @param options - Export options
-     * @returns Configuration data
-     */
-    static export(options = {}) {
-        const args = ["export"];
-        if (options.profile) {
-            args.push("--profile", options.profile);
-        }
-        if (options.type) {
-            args.push("--type", options.type);
-        }
-        args.push("--compact");
-        const output = executeCLI(args, { captureStdout: true, verbose: options.verbose });
-        return JSON.parse(output);
-    }
-    /**
-     * Get a specific configuration field value
-     *
-     * @param key - Field key (supports dot notation)
-     * @param options - Get options
-     * @returns Field value
-     */
-    static get(key, options = {}) {
-        const args = ["get", key];
-        if (options.profile) {
-            args.push("--profile", options.profile);
-        }
-        if (options.type) {
-            args.push("--type", options.type);
-        }
-        if (options.default) {
-            args.push("--default", options.default);
-        }
-        const output = executeCLI(args, { captureStdout: true, verbose: options.verbose });
-        // Try to parse as JSON, otherwise return as string
-        try {
-            return JSON.parse(output.trim());
-        }
-        catch {
-            return output.trim();
-        }
-    }
-    /**
-     * Set a specific configuration field value
-     *
-     * @param key - Field key (supports dot notation)
-     * @param value - Value to set
-     * @param options - Set options
-     */
-    static set(key, value, options = {}) {
-        const isObject = typeof value === "object";
-        const args = ["set", key, isObject ? JSON.stringify(value) : String(value)];
-        if (options.profile) {
-            args.push("--profile", options.profile);
-        }
-        if (options.type) {
-            args.push("--type", options.type);
-        }
-        if (isObject) {
-            args.push("--json");
-        }
-        if (options.backup !== false) {
-            args.push("--backup");
-        }
-        executeCLI(args, { verbose: options.verbose });
-    }
-    /**
-     * Read user configuration
-     */
-    static readUser(profile = "default") {
-        return this.read({ profile, type: "user" });
-    }
-    /**
-     * Read derived configuration
-     */
-    static readDerived(profile = "default") {
-        return this.read({ profile, type: "derived" });
-    }
-    /**
-     * Read deployment configuration
-     */
-    static readDeploy(profile = "default") {
-        return this.read({ profile, type: "deploy" });
-    }
-    /**
-     * Read complete merged configuration
-     */
-    static readComplete(profile = "default") {
-        return this.export({ profile, type: "complete" });
-    }
-}
-exports.XDGCLIWrapper = XDGCLIWrapper;
-//# sourceMappingURL=xdg-cli-wrapper.js.map

package/dist/lib/xdg-cli-wrapper.js.map

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package/dist/scripts/infer-quilt-config.d.ts

@@ -1,47 +0,0 @@
-#!/usr/bin/env ts-node
-/**
- * Quilt Catalog Auto-Inference (v0.7.0)
- *
- * Automatically infers Quilt catalog configuration from:
- * 1. quilt3 CLI command (`quilt3 config`)
- * 2. AWS CloudFormation stack inspection
- * 3. Interactive catalog selection (if multiple catalogs available)
- *
- * Returns configuration in v0.7.0 ProfileConfig format.
- *
- * @module scripts/infer-quilt-config
- */
-import { QuiltConfig } from "../lib/types/config";
-/**
- * Inference options
- */
-export interface InferenceOptions {
-    region?: string;
-    profile?: string;
-    interactive?: boolean;
-}
-/**
- * Infers Quilt configuration from multiple sources
- *
- * Priority order:
- * 1. quilt3 CLI command (`quilt3 config`)
- * 2. CloudFormation stack inspection
- * 3. Interactive selection if multiple options
- *
- * Returns configuration in v0.7.0 ProfileConfig.quilt format.
- *
- * @param options - Inference options
- * @returns Quilt configuration object
- *
- * @example
- * ```typescript
- * const quiltConfig = await inferQuiltConfig({
- *   region: "us-east-1",
- *   profile: "default",
- *   interactive: true
- * });
- * console.log(quiltConfig.stackArn);
- * ```
- */
-export declare function inferQuiltConfig(options?: InferenceOptions): Promise<Partial<QuiltConfig>>;
-//# sourceMappingURL=infer-quilt-config.d.ts.map

package/dist/scripts/infer-quilt-config.d.ts.map

@@ -1 +0,0 @@
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package/dist/scripts/infer-quilt-config.js

@@ -1,315 +0,0 @@
-#!/usr/bin/env ts-node
-"use strict";
-/**
- * Quilt Catalog Auto-Inference (v0.7.0)
- *
- * Automatically infers Quilt catalog configuration from:
- * 1. quilt3 CLI command (`quilt3 config`)
- * 2. AWS CloudFormation stack inspection
- * 3. Interactive catalog selection (if multiple catalogs available)
- *
- * Returns configuration in v0.7.0 ProfileConfig format.
- *
- * @module scripts/infer-quilt-config
- */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.inferQuiltConfig = inferQuiltConfig;
-const child_process_1 = require("child_process");
-const readline = __importStar(require("readline"));
-const client_cloudformation_1 = require("@aws-sdk/client-cloudformation");
-/**
- * Executes quilt3 config command to get current catalog URL
- *
- * @returns Catalog URL from quilt3 CLI or null if command fails
- */
-function getQuilt3Catalog() {
-    try {
-        const output = (0, child_process_1.execSync)("quilt3 config", { encoding: "utf-8", stdio: ["pipe", "pipe", "ignore"] });
-        let catalogUrl = output.trim();
-        if (catalogUrl && catalogUrl.startsWith("http")) {
-            console.log(`Found quilt3 CLI configuration: ${catalogUrl}`);
-            // Strip protocol and trailing slash, store only domain
-            catalogUrl = catalogUrl.replace(/^https?:\/\//, "").replace(/\/$/, "");
-            return { catalogUrl };
-        }
-        return null;
-    }
-    catch {
-        // quilt3 command not available or failed
-        return null;
-    }
-}
-/**
- * Finds Quilt CloudFormation stacks in AWS account
- *
- * @param region - AWS region to search
- * @param profile - AWS profile to use
- * @returns Array of Quilt stack information
- */
-async function findQuiltStacks(region, profile) {
-    try {
-        const clientConfig = { region };
-        if (profile) {
-            const { fromIni } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/credential-providers")));
-            clientConfig.credentials = fromIni({ profile });
-        }
-        const client = new client_cloudformation_1.CloudFormationClient(clientConfig);
-        // List all stacks
-        const listCommand = new client_cloudformation_1.ListStacksCommand({
-            StackStatusFilter: ["CREATE_COMPLETE", "UPDATE_COMPLETE"],
-        });
-        const listResponse = await client.send(listCommand);
-        const stacks = listResponse.StackSummaries || [];
-        // Filter for Quilt stacks (containing "quilt" in the name)
-        const quiltStacks = stacks.filter((stack) => stack.StackName?.toLowerCase().includes("quilt") ||
-            stack.StackName?.toLowerCase().includes("catalog"));
-        // Get detailed information for each stack
-        const stackInfos = [];
-        for (const stack of quiltStacks) {
-            if (!stack.StackName)
-                continue;
-            try {
-                const describeCommand = new client_cloudformation_1.DescribeStacksCommand({
-                    StackName: stack.StackName,
-                });
-                const describeResponse = await client.send(describeCommand);
-                const stackDetail = describeResponse.Stacks?.[0];
-                if (!stackDetail)
-                    continue;
-                const outputs = stackDetail.Outputs || [];
-                const stackInfo = {
-                    stackName: stack.StackName,
-                    stackArn: stackDetail.StackId || "",
-                    region: region,
-                };
-                // Extract outputs
-                for (const output of outputs) {
-                    const key = output.OutputKey || "";
-                    const value = output.OutputValue || "";
-                    if (key === "QuiltWebHost") {
-                        // Strip protocol and trailing slash, store only domain
-                        stackInfo.catalogUrl = value.replace(/^https?:\/\//, "").replace(/\/$/, "");
-                    }
-                    else if (key.includes("ucket")) {
-                        stackInfo.bucket = value;
-                    }
-                    else if (key === "UserAthenaDatabaseName" || key.includes("Database")) {
-                        stackInfo.database = value;
-                    }
-                    else if (key.includes("Queue")) {
-                        stackInfo.queueArn = value;
-                    }
-                }
-                stackInfos.push(stackInfo);
-            }
-            catch (describeError) {
-                console.error(`Warning: Failed to describe stack ${stack.StackName}: ${describeError.message}`);
-            }
-        }
-        return stackInfos;
-    }
-    catch (error) {
-        console.error(`Warning: Failed to list CloudFormation stacks: ${error.message}`);
-        return [];
-    }
-}
-/**
- * Prompts user to select from multiple catalog options
- *
- * @param options - Array of catalog options
- * @returns Selected catalog index
- */
-async function promptCatalogSelection(options) {
-    console.log("\nMultiple Quilt catalog configurations found:");
-    options.forEach((opt, idx) => {
-        console.log(`  ${idx + 1}. ${opt}`);
-    });
-    const rl = readline.createInterface({
-        input: process.stdin,
-        output: process.stdout,
-    });
-    return new Promise((resolve) => {
-        rl.question(`\nSelect catalog (1-${options.length}): `, (answer) => {
-            rl.close();
-            const selection = parseInt(answer.trim(), 10);
-            if (isNaN(selection) || selection < 1 || selection > options.length) {
-                console.log("Invalid selection, using first option.");
-                resolve(0);
-            }
-            else {
-                resolve(selection - 1);
-            }
-        });
-    });
-}
-/**
- * Infers Quilt configuration from multiple sources
- *
- * Priority order:
- * 1. quilt3 CLI command (`quilt3 config`)
- * 2. CloudFormation stack inspection
- * 3. Interactive selection if multiple options
- *
- * Returns configuration in v0.7.0 ProfileConfig.quilt format.
- *
- * @param options - Inference options
- * @returns Quilt configuration object
- *
- * @example
- * ```typescript
- * const quiltConfig = await inferQuiltConfig({
- *   region: "us-east-1",
- *   profile: "default",
- *   interactive: true
- * });
- * console.log(quiltConfig.stackArn);
- * ```
- */
-async function inferQuiltConfig(options = {}) {
-    const { region = "us-east-1", profile, interactive = true } = options;
-    const result = {
-        region,
-    };
-    // Step 1: Try quilt3 CLI command
-    console.log("Checking quilt3 CLI configuration...");
-    const quilt3Config = getQuilt3Catalog();
-    if (quilt3Config?.catalogUrl) {
-        result.catalog = quilt3Config.catalogUrl;
-        console.log(`  ✓ Found catalog URL from quilt3: ${result.catalog}`);
-    }
-    else {
-        console.log("  No quilt3 CLI configuration found.");
-    }
-    // Step 2: Search for CloudFormation stacks
-    console.log("\nSearching for Quilt CloudFormation stacks...");
-    const stacks = await findQuiltStacks(region, profile);
-    if (stacks.length === 0) {
-        console.log("  No Quilt CloudFormation stacks found.");
-        if (!result.catalog) {
-            throw new Error("Unable to infer Quilt configuration. Please run 'quilt3 config <catalog-url>' or provide stack ARN manually.");
-        }
-        return result;
-    }
-    console.log(`  Found ${stacks.length} Quilt stack(s)\n`);
-    let selectedStack;
-    // If we have a catalog URL from quilt3, try to find matching stack
-    if (result.catalog && stacks.length > 1) {
-        // Both result.catalog and stack catalogUrl are now bare domains, so compare directly
-        const matchingStack = stacks.find((s) => s.catalogUrl === result.catalog);
-        if (matchingStack) {
-            selectedStack = matchingStack;
-            console.log(`  Auto-selected stack matching catalog URL: ${selectedStack.stackName}`);
-        }
-        else {
-            console.log(`  No stack found matching catalog URL: ${result.catalog}`);
-            if (interactive) {
-                const options = stacks.map((s) => `${s.stackName} (${s.region})`);
-                const selectedIndex = await promptCatalogSelection(options);
-                selectedStack = stacks[selectedIndex];
-                console.log(`\nSelected: ${selectedStack.stackName}`);
-            }
-            else {
-                selectedStack = stacks[0];
-                console.log(`  Using first stack: ${selectedStack.stackName}`);
-            }
-        }
-    }
-    else if (stacks.length === 1) {
-        selectedStack = stacks[0];
-        console.log(`  Using stack: ${selectedStack.stackName}`);
-    }
-    else if (interactive) {
-        const options = stacks.map((s) => `${s.stackName} (${s.region})`);
-        const selectedIndex = await promptCatalogSelection(options);
-        selectedStack = stacks[selectedIndex];
-        console.log(`\nSelected: ${selectedStack.stackName}`);
-    }
-    else {
-        selectedStack = stacks[0];
-        console.log(`  Using first stack: ${selectedStack.stackName}`);
-    }
-    // Populate result from selected stack
-    result.stackArn = selectedStack.stackArn;
-    result.bucket = selectedStack.bucket;
-    result.database = selectedStack.database || "quilt_catalog";
-    result.queueArn = selectedStack.queueArn;
-    result.region = selectedStack.region;
-    if (selectedStack.catalogUrl) {
-        result.catalog = selectedStack.catalogUrl;
-    }
-    console.log("\n✓ Quilt configuration inferred successfully\n");
-    return result;
-}
-/**
- * Main execution for CLI usage
- */
-async function main() {
-    const args = process.argv.slice(2);
-    const options = {
-        interactive: true,
-    };
-    // Parse command line arguments
-    for (let i = 0; i < args.length; i++) {
-        if (args[i] === "--region" && i + 1 < args.length) {
-            options.region = args[i + 1];
-            i++;
-        }
-        else if (args[i] === "--profile" && i + 1 < args.length) {
-            options.profile = args[i + 1];
-            i++;
-        }
-        else if (args[i] === "--non-interactive") {
-            options.interactive = false;
-        }
-    }
-    console.log("Quilt Catalog Auto-Inference (v0.7.0)\n");
-    const result = await inferQuiltConfig(options);
-    console.log("=== Inference Results ===");
-    console.log(`Stack ARN: ${result.stackArn || "Not found"}`);
-    console.log(`Catalog URL: ${result.catalog || "Not found"}`);
-    console.log(`Bucket: ${result.bucket || "Not found"}`);
-    console.log(`Database: ${result.database || "Not found"}`);
-    console.log(`Queue ARN: ${result.queueArn || "Not found"}`);
-    console.log(`Region: ${result.region || "Not found"}`);
-}
-// Run main if executed directly
-if (require.main === module) {
-    main().catch((error) => {
-        console.error("Error:", error.message);
-        process.exit(1);
-    });
-}
-//# sourceMappingURL=infer-quilt-config.js.map

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