@quiltdata/benchling-webhook 0.7.2-20251106T010445Z → 0.7.3-20251106T131511Z

package/dist/bin/commands/init.js

@@ -4,121 +4,29 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.initCommand = initCommand;
-const fs_1 = require("fs");
-const path_1 = require("path");
 const chalk_1 = __importDefault(require("chalk"));
-const boxen_1 = __importDefault(require("boxen"));
-const enquirer_1 = require("enquirer");
-async function initCommand(options) {
-    console.log((0, boxen_1.default)(chalk_1.default.bold("Benchling Webhook Setup"), {
-        padding: 1,
-        borderColor: "cyan",
-        borderStyle: "round",
-    }));
-    console.log();
-    console.log("Let's configure your deployment. You'll need:");
-    console.log("  • Access to your Quilt catalog");
-    console.log("  • An S3 bucket for storing data");
-    console.log("  • Benchling API credentials");
-    console.log();
-    console.log(chalk_1.default.dim("Press Ctrl+C at any time to cancel."));
-    console.log();
-    // Check if output file exists
-    const outputPath = (0, path_1.resolve)(options.output || ".env");
-    if ((0, fs_1.existsSync)(outputPath) && !options.force) {
-        console.error(chalk_1.default.yellow(`⚠️  File already exists: ${outputPath}`));
-        console.error();
-        const response = await (0, enquirer_1.prompt)({
-            type: "confirm",
-            name: "overwrite",
-            message: "Overwrite existing file?",
-            initial: false,
+const setup_wizard_1 = require("./setup-wizard");
+/**
+ * Init command - redirects to setup wizard (the modern way)
+ * This command is kept for backward compatibility
+ */
+async function initCommand(_options) {
+    console.log(chalk_1.default.yellow("Note: 'init' command has been replaced with an interactive setup wizard."));
+    console.log(chalk_1.default.dim("Starting setup wizard...\n"));
+    // Redirect to setup wizard
+    try {
+        await (0, setup_wizard_1.setupWizardCommand)({
+            profile: "default",
+            nonInteractive: false,
         });
-        if (!response.overwrite) {
-            console.log(chalk_1.default.yellow("Setup cancelled"));
+    }
+    catch (error) {
+        // Handle user cancellation gracefully
+        if (error instanceof Error && error.message.includes("User force closed")) {
+            console.log(chalk_1.default.yellow("\n✖ Setup cancelled"));
             process.exit(0);
         }
-        console.log();
-    }
-    // Prompt for required values
-    const answers = await (0, enquirer_1.prompt)([
-        {
-            type: "input",
-            name: "catalog",
-            message: "Quilt catalog URL (domain only):",
-            initial: "quilt-catalog.company.com",
-            validate: (value) => /^[a-z0-9.-]+\.[a-z]{2,}$/i.test(value) || "Please enter a valid domain name",
-        },
-        {
-            type: "input",
-            name: "bucket",
-            message: "S3 data bucket name:",
-            initial: "my-data-bucket",
-            validate: (value) => /^[a-z0-9.-]{3,63}$/.test(value) || "Please enter a valid S3 bucket name",
-        },
-        {
-            type: "input",
-            name: "tenant",
-            message: "Benchling tenant (XXX if you login to XXX.benchling.com):",
-            validate: (value) => value.trim().length > 0 || "Tenant is required",
-        },
-        {
-            type: "input",
-            name: "clientId",
-            message: "Benchling OAuth client ID:",
-            validate: (value) => value.trim().length > 0 || "Client ID is required",
-        },
-        {
-            type: "password",
-            name: "clientSecret",
-            message: "Benchling OAuth client secret:",
-            validate: (value) => value.trim().length > 0 || "Client secret is required",
-        },
-        {
-            type: "input",
-            name: "appId",
-            message: "Benchling app definition ID:",
-            validate: (value) => value.trim().length > 0 || "App definition ID is required",
-        },
-    ]);
-    // Build .env content
-    const envLines = [];
-    envLines.push("# ==============================================================================");
-    envLines.push("# Benchling Webhook Configuration");
-    envLines.push("# ==============================================================================");
-    envLines.push("# Generated by: npx @quiltdata/benchling-webhook init");
-    envLines.push("# Date: " + new Date().toISOString());
-    envLines.push("# ==============================================================================");
-    envLines.push("");
-    envLines.push("# Quilt Configuration");
-    envLines.push(`QUILT_CATALOG=${answers.catalog}`);
-    envLines.push(`QUILT_USER_BUCKET=${answers.bucket}`);
-    envLines.push("");
-    envLines.push("# Benchling Configuration");
-    envLines.push(`BENCHLING_TENANT=${answers.tenant}`);
-    envLines.push(`BENCHLING_CLIENT_ID=${answers.clientId}`);
-    envLines.push(`BENCHLING_CLIENT_SECRET=${answers.clientSecret}`);
-    envLines.push(`BENCHLING_APP_DEFINITION_ID=${answers.appId}`);
-    envLines.push("");
-    // Note: Inference is deprecated in secrets-only mode (v0.6.0+)
-    // Configuration is now stored in AWS Secrets Manager and CloudFormation parameters
-    // Add optional configuration section
-    if (!options.minimal) {
-        envLines.push("# Optional Configuration");
-        envLines.push("# PKG_PREFIX=benchling");
-        envLines.push("# LOG_LEVEL=INFO");
-        envLines.push("# ENABLE_WEBHOOK_VERIFICATION=true");
-        envLines.push("");
+        throw error;
     }
-    // Write file
-    (0, fs_1.writeFileSync)(outputPath, envLines.join("\n"));
-    console.log();
-    console.log((0, boxen_1.default)(`${chalk_1.default.green.bold("✓ Configuration saved!")}\n\n` +
-        `File: ${chalk_1.default.cyan(outputPath)}\n\n` +
-        `${chalk_1.default.bold("Next steps:")}\n` +
-        `  1. Review ${outputPath} and verify all values\n` +
-        `  2. Run: ${chalk_1.default.cyan("npx @quiltdata/benchling-webhook deploy")}\n` +
-        "  3. Configure your Benchling app\n\n" +
-        `${chalk_1.default.dim("For help: npx @quiltdata/benchling-webhook --help")}`, { padding: 1, borderColor: "green", borderStyle: "round" }));
 }
 //# sourceMappingURL=init.js.map

package/dist/bin/commands/init.js.map

@@ -1 +1 @@
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package/dist/bin/commands/manifest.d.ts

@@ -1,15 +1,4 @@
 import { type ConfigOptions } from "../../lib/utils/config";
-export interface ManifestOptions {
-    catalogDomain?: string;
-    version?: string;
-}
-/**
- * Generates the Benchling application manifest used during setup.
- *
- * @param options - Manifest generation options
- * @returns Manifest YAML as a string
- */
-export declare function generateBenchlingManifest(options?: ManifestOptions): string;
 export declare function manifestCommand(options: ConfigOptions & {
     output?: string;
 }): Promise<void>;

package/dist/bin/commands/manifest.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../bin/commands/manifest.ts"],"names":[],"mappings":"AAGA,OAAO,EAAkB,KAAK,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAK5E,wBAAsB,eAAe,CAAC,OAAO,EAAE,aAAa,GAAG;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAoDjG"}

package/dist/bin/commands/manifest.js

@@ -3,7 +3,6 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.generateBenchlingManifest = generateBenchlingManifest;
 exports.manifestCommand = manifestCommand;
 const fs_1 = require("fs");
 const chalk_1 = __importDefault(require("chalk"));
@@ -11,25 +10,20 @@ const boxen_1 = __importDefault(require("boxen"));
 const config_1 = require("../../lib/utils/config");
 // eslint-disable-next-line @typescript-eslint/no-require-imports
 const pkg = require("../../package.json");
-/**
- * Generates the Benchling application manifest used during setup.
- *
- * @param options - Manifest generation options
- * @returns Manifest YAML as a string
- */
-function generateBenchlingManifest(options = {}) {
-    const version = options.version || pkg.version;
-    // Generate app name from catalog domain if available
+async function manifestCommand(options) {
+    const config = (0, config_1.loadConfigSync)(options);
+    const outputPath = options.output || "app-manifest.yaml";
+    // Generate app name from catalog URL if available
     let appName = "Quilt Integration";
-    if (options.catalogDomain) {
+    if (config.quiltCatalog) {
         // Replace dots and colons with hyphens to create a valid identifier
-        appName = options.catalogDomain.replace(/[.:]/g, "-");
+        appName = config.quiltCatalog.replace(/[.:]/g, "-");
     }
-    return `manifestVersion: 1
+    const manifest = `manifestVersion: 1
 info:
   name: ${appName}
   description: Package Benchling notebook entries as Quilt data packages
-  version: ${version}
+  version: ${pkg.version}
 features:
   - name: Quilt Package
     id: quilt-entry
@@ -42,14 +36,6 @@ subscriptions:
     - type: v2.entry.created
     - type: v2.entry.updated.fields
 `;
-}
-async function manifestCommand(options) {
-    const config = (0, config_1.loadConfigSync)(options);
-    const outputPath = options.output || "app-manifest.yaml";
-    const manifest = generateBenchlingManifest({
-        catalogDomain: config.quiltCatalog,
-        version: pkg.version,
-    });
     try {
         (0, fs_1.writeFileSync)(outputPath, manifest);
         console.log(chalk_1.default.green(`✓ Created ${outputPath}`));

package/dist/bin/commands/manifest.js.map

@@ -1 +1 @@
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+{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../bin/commands/manifest.ts"],"names":[],"mappings":";;;;;AAQA,0CAoDC;AA5DD,2BAAmC;AACnC,kDAA0B;AAC1B,kDAA0B;AAC1B,mDAA4E;AAE5E,iEAAiE;AACjE,MAAM,GAAG,GAAG,OAAO,CAAC,oBAAoB,CAAC,CAAC;AAEnC,KAAK,UAAU,eAAe,CAAC,OAA4C;IAC9E,MAAM,MAAM,GAAG,IAAA,uBAAc,EAAC,OAAO,CAAC,CAAC;IACvC,MAAM,UAAU,GAAG,OAAO,CAAC,MAAM,IAAI,mBAAmB,CAAC;IAEzD,kDAAkD;IAClD,IAAI,OAAO,GAAG,mBAAmB,CAAC;IAClC,IAAI,MAAM,CAAC,YAAY,EAAE,CAAC;QACtB,oEAAoE;QACpE,OAAO,GAAG,MAAM,CAAC,YAAY,CAAC,OAAO,CAAC,OAAO,EAAE,GAAG,CAAC,CAAC;IACxD,CAAC;IAED,MAAM,QAAQ,GAAG;;UAEX,OAAO;;aAEJ,GAAG,CAAC,OAAO;;;;;;;;;;;;CAYvB,CAAC;IAEE,IAAI,CAAC;QACD,IAAA,kBAAa,EAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;QACpC,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,KAAK,CAAC,aAAa,UAAU,EAAE,CAAC,CAAC,CAAC;QACpD,OAAO,CAAC,GAAG,EAAE,CAAC;QACd,OAAO,CAAC,GAAG,CACP,IAAA,eAAK,EACD,GAAG,eAAK,CAAC,IAAI,CAAC,aAAa,CAAC,MAAM;YACxC,yCAAyC;YACzC,MAAM,eAAK,CAAC,IAAI,CAAC,gGAAgG,CAAC,MAAM;YACxH,8DAA8D;YAC9D,4EAA4E;YAC5E,MAAM,eAAK,CAAC,IAAI,CAAC,oFAAoF,CAAC,MAAM;YAC5G,qBAAqB;YACrB,MAAM,eAAK,CAAC,IAAI,CAAC,kCAAkC,CAAC,IAAI;YACxD,MAAM,eAAK,CAAC,GAAG,CAAC,gDAAgD,CAAC,MAAM;YACvE,yEAAyE,EACnE,EAAE,OAAO,EAAE,CAAC,EAAE,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,OAAO,EAAE,CAC5D,CACJ,CAAC;IACN,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACb,OAAO,CAAC,KAAK,CAAC,eAAK,CAAC,GAAG,CAAC,gCAAiC,KAAe,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC;QACrF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;AACL,CAAC"}

package/dist/bin/commands/setup-profile.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"setup-profile.d.ts","sourceRoot":"","sources":["../../../bin/commands/setup-profile.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAOH;;;;;;;;;;;;;GAaG;AACH,wBAAsB,mBAAmB,CACrC,WAAW,EAAE,MAAM,EACnB,OAAO,CAAC,EAAE;IACN,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,KAAK,CAAC,EAAE,OAAO,CAAC;CACnB,GACF,OAAO,CAAC,IAAI,CAAC,CAsNf"}
+{"version":3,"file":"setup-profile.d.ts","sourceRoot":"","sources":["../../../bin/commands/setup-profile.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAOH;;;;;;;;;;;;;GAaG;AACH,wBAAsB,mBAAmB,CACrC,WAAW,EAAE,MAAM,EACnB,OAAO,CAAC,EAAE;IACN,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,KAAK,CAAC,EAAE,OAAO,CAAC;CACnB,GACF,OAAO,CAAC,IAAI,CAAC,CAoNf"}

package/dist/bin/commands/setup-profile.js

@@ -118,24 +118,22 @@ async function setupProfileCommand(profileName, options) {
     // Optionally prompt for custom Quilt stack ARN
     let quiltStackArn = baseConfig.quilt.stackArn;
     if (answers.customizeQuiltStack) {
-        const stackAnswer = await inquirer_1.default.prompt([
-            {
-                type: "input",
-                name: "quiltStackArn",
-                message: "Quilt Stack ARN:",
-                default: baseConfig.quilt.stackArn,
-                validate: (input) => {
-                    if (!input || input.trim().length === 0) {
-                        return "Quilt Stack ARN is required";
-                    }
-                    if (!input.startsWith("arn:aws:cloudformation:")) {
-                        return "Must be a valid CloudFormation stack ARN";
-                    }
-                    return true;
-                },
+        const stackAnswer = await inquirer_1.default.prompt({
+            type: "input",
+            name: "stackArn",
+            message: "Quilt Stack ARN:",
+            default: baseConfig.quilt.stackArn,
+            validate: (input) => {
+                if (!input || input.trim().length === 0) {
+                    return "Quilt Stack ARN is required";
+                }
+                if (!input.startsWith("arn:aws:cloudformation:")) {
+                    return "Must be a valid CloudFormation stack ARN";
+                }
+                return true;
             },
-        ]);
-        quiltStackArn = stackAnswer.quiltStackArn;
+        });
+        quiltStackArn = stackAnswer.stackArn;
     }
     // Optionally prompt for custom secret ARN
     let secretArn = baseConfig.benchling.secretArn;

package/dist/bin/commands/setup-profile.js.map

@@ -1 +1 @@
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package/dist/bin/commands/setup-wizard.d.ts

@@ -22,8 +22,6 @@ export interface InstallWizardOptions {
     nonInteractive?: boolean;
     skipValidation?: boolean;
     skipSecretsSync?: boolean;
-    skipDeployment?: boolean;
-    deployStage?: "dev" | "prod";
     awsProfile?: string;
     awsRegion?: string;
 }

package/dist/bin/commands/setup-wizard.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"setup-wizard.d.ts","sourceRoot":"","sources":["../../../bin/commands/setup-wizard.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;;GAaG;AAimBH;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACjC,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,eAAe,CAAC,EAAE,OAAO,CAAC;IAC1B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,SAAS,CAAC,EAAE,MAAM,CAAC;CACtB;AA0LD;;;;;GAKG;AACH,wBAAsB,kBAAkB,CAAC,OAAO,GAAE,oBAAyB,GAAG,OAAO,CAAC,IAAI,CAAC,CAe1F"}