@publisle/research 0.0.0-stage → 0.1.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (147) hide show
  1. package/LICENSE +21 -0
  2. package/NOTICE.md +31 -0
  3. package/README.md +14 -2
  4. package/compiler/Dockerfile +18 -0
  5. package/compiler/README.md +80 -0
  6. package/compiler/cacert.pem +2950 -0
  7. package/compiler/install-texlive.sh +38 -0
  8. package/compiler/release.json +13 -0
  9. package/dist/article.d.ts +10 -0
  10. package/dist/article.d.ts.map +1 -0
  11. package/dist/article.js +425 -0
  12. package/dist/article.js.map +1 -0
  13. package/dist/bibtex.d.ts +2 -0
  14. package/dist/bibtex.d.ts.map +1 -0
  15. package/dist/bibtex.js +2 -0
  16. package/dist/bibtex.js.map +1 -0
  17. package/dist/citeproc.d.ts +28 -0
  18. package/dist/csl.d.ts +35 -0
  19. package/dist/csl.d.ts.map +1 -0
  20. package/dist/csl.js +315 -0
  21. package/dist/csl.js.map +1 -0
  22. package/dist/index.d.ts +13 -0
  23. package/dist/index.d.ts.map +1 -0
  24. package/dist/index.js +12 -0
  25. package/dist/index.js.map +1 -0
  26. package/dist/jats.d.ts +14 -0
  27. package/dist/jats.d.ts.map +1 -0
  28. package/dist/jats.js +197 -0
  29. package/dist/jats.js.map +1 -0
  30. package/dist/latex.d.ts +5 -0
  31. package/dist/latex.d.ts.map +1 -0
  32. package/dist/latex.js +19 -0
  33. package/dist/latex.js.map +1 -0
  34. package/dist/locales.d.ts +2 -0
  35. package/dist/locales.d.ts.map +1 -0
  36. package/dist/locales.js +67 -0
  37. package/dist/locales.js.map +1 -0
  38. package/dist/node.d.ts +66 -0
  39. package/dist/node.d.ts.map +1 -0
  40. package/dist/node.js +542 -0
  41. package/dist/node.js.map +1 -0
  42. package/dist/package.d.ts +19 -0
  43. package/dist/package.d.ts.map +1 -0
  44. package/dist/package.js +48 -0
  45. package/dist/package.js.map +1 -0
  46. package/dist/pdf.d.ts +10 -0
  47. package/dist/pdf.d.ts.map +1 -0
  48. package/dist/pdf.js +207 -0
  49. package/dist/pdf.js.map +1 -0
  50. package/dist/portable-citations.d.ts +27 -0
  51. package/dist/portable-citations.d.ts.map +1 -0
  52. package/dist/portable-citations.js +185 -0
  53. package/dist/portable-citations.js.map +1 -0
  54. package/dist/profiles.d.ts +10 -0
  55. package/dist/profiles.d.ts.map +1 -0
  56. package/dist/profiles.js +166 -0
  57. package/dist/profiles.js.map +1 -0
  58. package/dist/remote.d.ts +24 -0
  59. package/dist/remote.d.ts.map +1 -0
  60. package/dist/remote.js +139 -0
  61. package/dist/remote.js.map +1 -0
  62. package/dist/resolve.d.ts +10 -0
  63. package/dist/resolve.d.ts.map +1 -0
  64. package/dist/resolve.js +62 -0
  65. package/dist/resolve.js.map +1 -0
  66. package/package.json +53 -3
  67. package/src/article.ts +478 -0
  68. package/src/bibtex.ts +1 -0
  69. package/src/citeproc.d.ts +28 -0
  70. package/src/csl.ts +367 -0
  71. package/src/index.ts +29 -0
  72. package/src/jats.ts +242 -0
  73. package/src/latex.ts +21 -0
  74. package/src/locales.ts +126 -0
  75. package/src/node.ts +752 -0
  76. package/src/package.ts +83 -0
  77. package/src/pdf.ts +225 -0
  78. package/src/portable-citations.ts +250 -0
  79. package/src/profiles.ts +188 -0
  80. package/src/remote.ts +163 -0
  81. package/src/resolve.ts +91 -0
  82. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/BITS-embedded-index2.ent +308 -0
  83. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/BITS-question-answer2.ent +531 -0
  84. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-XHTMLtablesetup1-3.ent +629 -0
  85. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-ali-namespace1-3.ent +293 -0
  86. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-archivearticle1-3.dtd +1085 -0
  87. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-archivecustom-classes1-3.ent +409 -0
  88. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-archivecustom-mixes1-3.ent +601 -0
  89. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-archivecustom-models1-3.ent +1613 -0
  90. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-archivecustom-modules1-3.ent +404 -0
  91. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-articlemeta1-3.ent +2552 -0
  92. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-backmatter1-3.ent +540 -0
  93. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-chars1-3.ent +664 -0
  94. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-common-atts1-3.ent +360 -0
  95. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-common1-3.ent +4659 -0
  96. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-default-classes1-3.ent +1595 -0
  97. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-default-mixes1-3.ent +630 -0
  98. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-display1-3.ent +1299 -0
  99. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-format1-3.ent +997 -0
  100. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-funding1-3.ent +1100 -0
  101. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-journalmeta1-3.ent +593 -0
  102. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-link1-3.ent +604 -0
  103. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-list1-3.ent +663 -0
  104. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-math1-3.ent +563 -0
  105. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-mathmlsetup1-3.ent +491 -0
  106. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-modules1-3.ent +769 -0
  107. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-nlmcitation1-3.ent +428 -0
  108. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-notat1-3.ent +412 -0
  109. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-para1-3.ent +648 -0
  110. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-phrase1-3.ent +664 -0
  111. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-references1-3.ent +1428 -0
  112. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-related-object1-3.ent +435 -0
  113. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-section1-3.ent +463 -0
  114. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/JATS-xmlspecchars1-3.ent +528 -0
  115. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/catalog-jats-v1-3-no-base.xml +999 -0
  116. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/catalog-jats-v1-3-with-base.xml +986 -0
  117. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isobox.ent +61 -0
  118. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isocyr1.ent +88 -0
  119. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isocyr2.ent +47 -0
  120. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isodia.ent +35 -0
  121. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isolat1.ent +83 -0
  122. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isolat2.ent +142 -0
  123. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isonum.ent +97 -0
  124. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso8879/isopub.ent +105 -0
  125. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isoamsa.ent +167 -0
  126. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isoamsb.ent +143 -0
  127. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isoamsc.ent +43 -0
  128. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isoamsn.ent +114 -0
  129. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isoamso.ent +73 -0
  130. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isoamsr.ent +204 -0
  131. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isogrk3.ent +64 -0
  132. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isomfrk.ent +75 -0
  133. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isomopf.ent +49 -0
  134. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isomscr.ent +75 -0
  135. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/iso9573-13/isotech.ent +182 -0
  136. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/mathml/mmlalias.ent +564 -0
  137. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/mathml/mmlextra.ent +122 -0
  138. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/mathml2-qname-1.mod +286 -0
  139. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/mathml2.dtd +2206 -0
  140. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/xhtml-inlstyle-1.mod +34 -0
  141. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/xhtml-table-1.mod +333 -0
  142. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/xmlchars/isogrk1.ent +70 -0
  143. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/xmlchars/isogrk2.ent +41 -0
  144. package/vendor/jats/JATS-Archiving-1-3-MathML2-DTD/xmlchars/isogrk4.ent +66 -0
  145. package/vendor/jats/PROVENANCE.json +6 -0
  146. package/vendor/locales/PROVENANCE.json +5 -0
  147. package/vendor/locales/README.md +23 -0
@@ -0,0 +1,769 @@
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+ <!-- ============================================================= -->
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+ <!-- MODULE: JATS DTD Suite Module of Modules -->
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+ <!-- VERSION: ANSI/NISO JATS Version 1.3 (Z39.96-2021) -->
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+ <!-- DATE: June 2021 -->
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+ <!-- -->
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+ <!-- ============================================================= -->
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+
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+ <!-- ============================================================= -->
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+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
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+ <!-- TYPICAL INVOCATION -->
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+ <!--
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+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Module of Modules v1.3 20210610//EN"
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+ Delivered as file "JATS-modules1-3.ent" -->
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+ <!-- ============================================================= -->
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+
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+ <!-- ============================================================= -->
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+ <!-- SYSTEM: JATS DTD Suite -->
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+ <!-- -->
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+ <!-- PURPOSE: For naming all the external modules (except -->
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+ <!-- this module itself and the customization modules) -->
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+ <!-- that are part of the JATS DTD Suite. A specific -->
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+ <!-- DTD will select from these modules by referencing -->
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+ <!-- the external Parameter Entities defined below that-->
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+ <!-- name the modules of the suite. To include a set -->
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+ <!-- of elements (such as all the lists or the MathML -->
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+ <!-- elements), reference the external Parameter Entity-->
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+ <!-- of the module that contains these declarations, -->
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+ <!-- then modify the classes or content models to use -->
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+ <!-- the new elements. -->
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+ <!-- -->
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+ <!-- CONTAINS: Entity declarations and public names for all the -->
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+ <!-- JATS DTD Suite external modules. Note: The modules-->
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+ <!-- are NOT referenced (called/invoked) in this -->
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+ <!-- module, they are merely DECLARED. The DTD or -->
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+ <!-- a setup module (such as for the XHTML tables) -->
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+ <!-- will invoke the external parameter entity to -->
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+ <!-- call each module. -->
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+ <!-- -->
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+ <!-- TAG SET SPONSOR -->
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+ <!-- National Center for Biotechnology -->
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+ <!-- Information (NCBI) -->
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+ <!-- National Library of Medicine (NLM) -->
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+ <!-- -->
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+ <!-- CREATED FOR: -->
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+ <!-- This module was created for the JATS DTD Suite. -->
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+ <!-- Digital archives and publishers may use the -->
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+ <!-- DTD as is for markup of journal literature or -->
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+ <!-- related material for archiving and transferring -->
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+ <!-- such material between archives or create a -->
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+ <!-- custom XML DTD from the Suite for -->
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+ <!-- these purposes. -->
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+ <!-- -->
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+ <!-- This DTD is in the public domain. An organization -->
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+ <!-- that wishes to create its own DTD from the suite -->
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+ <!-- may do so without permission from NLM. -->
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+ <!-- -->
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+ <!-- The suite has been set up to be extended using a -->
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+ <!-- new DTD file and a new DTD-specific customization -->
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+ <!-- module to redefine the many Parameter Entities. -->
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+ <!-- Do not modify the suite directly or redistribute -->
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+ <!-- modified versions of the suite. -->
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+ <!-- -->
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+ <!-- In the interest of maintaining consistency and -->
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+ <!-- clarity for potential users, NLM requests: -->
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+ <!-- -->
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+ <!-- 1. If you create a DTD from the JATS DTD Suite -->
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+ <!-- and intend to stay compatible with the suite, -->
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+ <!-- then please include the following statement -->
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+ <!-- as a comment in all of your DTD modules: -->
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+ <!-- "Created from, and fully compatible with, -->
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+ <!-- the ANSI/NISO Z39.96 Journal Article Tag -->
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+ <!-- Suite (JATS)." -->
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+ <!-- -->
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+ <!-- 2. If you alter one or more modules of the suite, -->
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+ <!-- then please rename your version and all its -->
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+ <!-- modules to avoid any confusion with the -->
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+ <!-- original suite. Also, please include the -->
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+ <!-- following statement as a comment in all your -->
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+ <!-- DTD modules: -->
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+ <!-- "Based in part on, but not fully compatible -->
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+ <!-- with, the ANSI/NISO Z39.96 Journal Article -->
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+ <!-- Tag Suite (JATS)." -->
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+ <!-- -->
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+ <!-- ORIGINAL CREATION DATE: -->
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+ <!-- December 2002 -->
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+ <!-- -->
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+ <!-- CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96 -->
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+ <!-- Working Group. Mulberry Technologies was -->
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+ <!-- supported by National Center for Biotechnology -->
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+ <!-- Information (NCBI), a center of the US National -->
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+ <!-- Library of Medicine (NLM). -->
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+ <!-- -->
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+ <!-- This module is part of the JATS DTD Suite. The -->
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+ <!-- Suite is a continuation of work done by NCBI, -->
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+ <!-- Mulberry Technologies, and Inera Inc. on the NLM -->
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+ <!-- Journal Archiving and Interchange DTD Suite, which-->
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+ <!-- was originally released in December, 2002. -->
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+ <!-- -->
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+ <!-- NLM thanks the Harvard University Libraries, both -->
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+ <!-- for proposing that a draft archiving NLM DTD for -->
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+ <!-- life sciences journals be extended to accommodate -->
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+ <!-- journals in all disciplines and for sponsoring -->
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+ <!-- Inera Inc.'s collaboration with other DTD -->
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+ <!-- authors in completing NLM Version 1.0. The -->
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+ <!-- Andrew W. Mellon Foundation provided support for -->
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+ <!-- these important contributions. -->
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+ <!-- -->
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+ <!-- Suggestions for refinements and enhancements to -->
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+ <!-- this DTD should be sent in email to: -->
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+ <!-- jats@ncbi.nlm.nih.gov -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- ============================================================= -->
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+ <!-- DTD VERSION/CHANGE HISTORY -->
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+ <!-- ============================================================= -->
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+ <!--
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+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
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+ ==============================================================
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+ JATS Version 1.3 (ANSI/NISO Z39.96-2021)
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+ (DAL/BTU) v1.3 (2021-06-10)
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+
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+ ANSI NISO JATS is a continuing maintenance NISO Standard,
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+ which requires voting by both the NISO and ANSI memberships
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+ to be changed. This version of the NISO JATS was approved
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+ by ANSI vote on June 10, 2021, so it supersedes all Committee
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+ Drafts as well as the draft version JATS 1.3 2021 (the version
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+ submitted for vote), becoming NISO JATS v1.3 20210610
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+ (ANSI/NISO Z39.96-2019).
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+
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+ The file names and formal public identifiers have been
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+ changed in the modules and the catalogs.
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+
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+ 18. JATS 'v1.3d2 20201130' becomes 'v1.3 20210610'
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+ (final ANSI vote date)
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+ 'ANSI/NISO Z39.96-2019' becomes 'ANSI/NISO Z39.96-2021'
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+
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+ ==============================================================
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+ JATS Version 1.3d2 (ANSI/NISO Z39.96-2021)
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+ (DAL/BTU) v1.3d2 (2020-11-30)
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+
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+ ANSI NISO JATS is a continuing maintenance NISO Standard,
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+ which requires voting by the NISO and ANSI memberships
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+ to be changed.
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+
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+ This draft DTD represents an interim version of the
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+ non-normative JATS DTD Suite, as an indication to JATS users
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+ of the decisions that have been made by the JATS Standing
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+ Committee. This draft has not yet been given public review
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+ or voting; it is for Standing Committee review and
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+ testing. The formal public identifiers have been changed
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+ in the modules and the catalogs.
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+
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+ 17. JATS "v1.3d2 20201130" becomes 'v1.3 20210610' (second
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+ committee draft following the final ANSI/NISO 1.2 vote)
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+
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+ ==============================================================
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+ JATS Version 1.3d1 (ANSI/NISO Z39.96-2021)
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+ (DAL/BTU) v1.3.d1 (2019-08-31)
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+
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+ ANSI NISO JATS is a continuing maintenance NISO Standard,
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+ which requires voting by the NISO and ANSI memberships
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+ to be changed.
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+
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+ This draft DTD represents an interim version of the
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+ non-normative JATS DTD Suite, as an indication to JATS users
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+ of the decisions that have been made by the JATS Standing
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+ Committee. This draft has not yet been given public review
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+ or voting. The formal public identifiers were changed in the
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+ modules and the catalogs.
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+
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+ 16. QUESTIONS AND ANSWERS - Added the BITS modules question and
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+ answer modules, so quizzes can be constructed for articles.
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+
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+ 15. JATS "1.2" becomes "v1.3d1 20190831" (first committee
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+ draft following the final ANSI/NISO vote)
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+
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+ ==============================================================
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+ JATS Version 1.2 (ANSI/NISO Z39.96-2021)
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+ (DAL/BTU) v1.2 (2019-02-08)
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+
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+ NISO JATS is a continuing maintenance NISO Standard, which
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+ requires voting by the both the NISO and ANSI membership
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+ to be changed. This version of the NISO JATS was approved
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+ by ANSI vote on Feb 08, 2019, so it supersedes all Committee
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+ Drafts as well as the draft version JATS 1.2 2018 (the version
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+ submitted for vote), becoming NISO JATS v1.2 20190208
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+ (ANSI/NISO Z39.96-2021).
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+
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+ 14. JATS "1.2" becomes "v1.2 20190208" (final ANSI vote date)
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+ "ANSI/NISO Z39.96-2015" becomes "ANSI/NISO Z39.96-2019"
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+
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+ ==============================================================
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+ JATS Version 1.2 (ANSI/NISO Z39.96-2018)
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+
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+ (DAL/BTU) v1.2 (2018-11-30)
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+
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+ NISO JATS is a continuing maintenance NISO Standard, which
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+ requires voting by the both the NISO and ANSI membership
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+ to be changed. This version of the NISO JATS was approved
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+ by ANSI and NISO vote, so it supersedes all Committee Drafts
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+ and becoming NISO JATS 1.2 (ANSI/NISO Z39.96-2018).
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+
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+ 13.
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+ JATS "1.2d2" and "v1.2d2 20180401" became
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+ JATS "1.2" and "v1.2 20181130"
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+
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+ =============================================================
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+
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+ JATS Version 1.2d2 (DAL/BTU) v1.2d2 (2018-04-01)
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+
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+ JATS is a continuing maintenance NISO Standard, which
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+ requires voting by the ANSI and NISO memberships to be changed.
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+ BITS is under continuous maintenance, and is modified at the
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+ discretion of the working group.
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+
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+ This draft DTD represents an interim version of the
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+ non-normative JATS DTD Suite, as an indication to JATS users
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+ the decisions that have been made by the JATS Standing
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+ Committee. This draft has not yet been given public review
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+ or voting. The formal public identifiers were changed in the
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+ modules and the catalogs.
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+
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+ 12. INLINE EMBEDDED INDEX - Added definition of BITS module that
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+ defines inline (embedded) index terms.
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+
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+ 11. BITS "2.0" and "v2.0 20151225" remain unchanged
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+
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+ JATS "1.2d1" and "v1.2d1 20171231" became
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+ JATS "1.2d2" and "v1.2d2 20180401".
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+
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+ No module names were changed.
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+
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+ =============================================================
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+ JATS Version 1.2d1 (ANSI/NISO Z39.96-2015)
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+ (DAL/BTU) v1.2d1 (2017-12-31)
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+
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+ NISO JATS is a continuing maintenance NISO Standard, which
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+ requires voting by the ANSI and NISO memberships to be changed.
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+
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+ This draft DTD represents an interim version of the
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+ non-normative JATS DTD Suite, as an indication to JATS users
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+ the decisions that have been made by the JATS Standing
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+ Committee. This draft has not yet been given public review
246
+ or voting. The formal public identifiers were changed in the
247
+ modules and the catalogs.
248
+
249
+ 10. JATS "1.2d1" and "v1.2d1 20170631" became
250
+ JATS "1.2d1" and "v1.2d1 20171231".
251
+
252
+ =============================================================
253
+ JATS Version 1.2d1 (DAL/BTU) v1.2d1 (2017-06-31)
254
+
255
+ NISO JATS is a continuing maintenance NISO Standard, which
256
+ requires voting by the ANSI and NISO memberships to be changed.
257
+
258
+ This draft DTD represents an interim version of the
259
+ non-normative JATS DTD Suite, as an indication to JATS users
260
+ the decisions that have been made by the JATS Standing
261
+ Committee. This draft has not yet been given public review
262
+ or voting. The formal public identifiers were changed in the
263
+ modules and the catalogs.
264
+
265
+ 9. JATS became version "1.2d1" and "v1.2d1 20170631"
266
+
267
+ =============================================================
268
+ JATS Version 1.1 (DAL/BTU) v1.1 (2015-12-15)
269
+
270
+ JATS is a continuing maintenance NISO Standard, which
271
+ requires voting by the ANSI and NISO memberships to be changed.
272
+ JATS 1.1 was approved in late 2015, so the formal public
273
+ identifiers were changed in the modules and the catalogs.
274
+ No model or attribute changes were made at this time.
275
+
276
+ 8. JATS became version "1.1" and "v1.1 20151215"
277
+ BITS remained version "2.0" but becomes "v2.0 20151225"
278
+
279
+ =============================================================
280
+ JATS Version 1.1d3 (DAL/BTU) v1.1d3 (2015-03-01)
281
+
282
+ The changes in this release are in response to NISO
283
+ License and Indicators Recommended Practice.
284
+
285
+ NISO JATS is a continuing maintenance NISO Standard, which
286
+ requires voting by the NISO membership to be changed. This
287
+ Committee Draft 1.1d3 will be sent to the NISO voting
288
+ membership, to become (if approved) NISO JATS 1.1.
289
+
290
+ This draft DTD represents an interim version of the
291
+ non-normative JATS DTD Suite, as an indication to JATS users
292
+ the decisions that have been made by the JATS Standing
293
+ Committee.
294
+
295
+ 7. JATS became version "1.1d3" and "v1.1d3 20150301"
296
+
297
+ =============================================================
298
+ JATS Version 1.1d2 (DAL/BTU) v1.1d2 (2014-09-30)
299
+
300
+ NISO JATS is a continuing maintenance NISO Standard, which
301
+ requires voting by the NISO membership to be changed. This
302
+ Committee Draft 1.1d2 will be sent to the NISO voting
303
+ membership, to become (if approved) NISO JATS 1.1.
304
+
305
+ This catalog represents an interim version of the
306
+ non-normative JATS DTD Suite, as an indication to JATS users
307
+ the decisions that have been made by the JATS Standing
308
+ Committee.
309
+
310
+ 6. JATS became version "1.1d2" and "v1.1d2 20140930//EN"
311
+
312
+ =============================================================
313
+ NISO JATS Version 1.1d1 (DAL/BTU) v1.1 (2013-11-15)
314
+
315
+ ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1d1)
316
+
317
+ NISO JATS Standing Committee met and answered the requests and
318
+ suggestions from the NISO request forms.
319
+
320
+ Details concerning ANSI/NISO Z39.96-2012 JATS-based
321
+ DTDs, XSDs, RNGs and supporting documentation are available at
322
+ http://jats.nlm.nih.gov/1.3d2/
323
+
324
+ =============================================================
325
+ NISO JATS Version 1.0 (DAL/BTU) v1.0 (2012-xx-xx)
326
+
327
+ ANSI/NISO Z39.96-2012 (Version 1.0)
328
+
329
+ Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,
330
+ XSDs, RNGs and supporting documentation are available at
331
+ http://jats.nlm.nih.gov/1.3d2/
332
+
333
+ 5. NLMCITATION - Added module for deprecated element <nlm-citation>
334
+ because the element is called in a default class
335
+ (citation.class) that, for reasons of backwards compatibility,
336
+ will not be changed at this time.
337
+
338
+ 4. Updated the DTD-version attribute to "1.0" and the formal
339
+ public identifier to the date: "v1.0 20120330//EN".
340
+
341
+ =============================================================
342
+ Version 0.4 (DAL/BTU) v0.4 (2011-01-31)
343
+
344
+ This Tag Set is in the process of becoming a NISO standard.
345
+ The version numbers are starting over from 0.4", as a Trial
346
+ Use Draft, to be made into "Version 1.0" when the Tag Suite
347
+ becomes a NISO standard. Thus, the version number that would
348
+ have been "NLM Version 3.1 Draft" has become NISO JATS
349
+ "Version 0.4".
350
+
351
+ Details on NISO Trial Use Draft Version 0.4 are available at
352
+ http://jats.nlm.nih.gov/JATS-0.4.
353
+
354
+ 3. Updated the DTD-version attribute to "0.4"
355
+
356
+ 2. Updated the public identifier to "v0.4 20110131",
357
+ modified the formal public identifier to include "JATS (Z39.96)",
358
+ and the filename as delivered to include "JATS" and the
359
+ new version number "0".
360
+
361
+ =============================================================
362
+ Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
363
+
364
+ Version 3.0 is the first non-backward-compatible release.
365
+ In addition to the usual incremental changes, some
366
+ elements and attributes have been renamed and/or remodeled
367
+ to better meet user needs and to increase tag set consistency.
368
+ All module change histories are available through the Tag Suite
369
+ web site at http://dtd.nlm.nih.gov.
370
+
371
+ Details on version 3.0 are available at
372
+ http://dtd.nlm.nih.gov/3.0.
373
+
374
+ 1. Updated public identifier to "v3.0 20071031//EN" -->
375
+
376
+ <!-- ============================================================= -->
377
+ <!-- Details concerning
378
+ ANSI/NISO Z39.96-2015 JATS-based DTDs, XSDs,
379
+ RNGs and supporting documentation are available at
380
+ http://jats.nlm.nih.gov/1.3d2/ -->
381
+
382
+ <!-- ============================================================= -->
383
+ <!-- DEFAULT CLASSES AND MIXES -->
384
+ <!-- ============================================================= -->
385
+
386
+
387
+ <!-- DEFAULT ELEMENT CLASSES MODULE -->
388
+ <!-- Set up the Parameter Entities and element
389
+ class definitions that will be used to
390
+ establish the content models for the
391
+ Archiving and Interchange DTD. -->
392
+ <!ENTITY % default-classes.ent
393
+ PUBLIC
394
+ "-//NLM//DTD JATS (Z39.96) Default Element Classes Module v1.3 20210610//EN"
395
+ "JATS-default-classes1-3.ent" >
396
+
397
+
398
+ <!-- DEFAULT ELEMENT MIXES MODULE -->
399
+ <!-- Set up the Parameter Entities and element
400
+ mix definitions that will be used in
401
+ content models for the Archiving and
402
+ Interchange DTD. -->
403
+ <!ENTITY % default-mixes.ent
404
+ PUBLIC
405
+ "-//NLM//DTD JATS (Z39.96) Default Element Mixes Module v1.3 20210610//EN"
406
+ "JATS-default-mixes1-3.ent" >
407
+
408
+
409
+ <!-- ============================================================= -->
410
+ <!-- COMMON ATTRIBUTES SHARED BY ALL ELEMENTS -->
411
+ <!-- ============================================================= -->
412
+
413
+
414
+ <!-- COMMON ATTRIBUTES SHARED BY ALL ELEMENTS -->
415
+ <!ENTITY % JATS-common-atts.ent
416
+ PUBLIC
417
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Common Attributes (for all elements) v1.3 20210610//EN"
418
+ "JATS-common-atts1-3.ent" >
419
+
420
+
421
+ <!-- ============================================================= -->
422
+ <!-- COMMON ELEMENTS SHARED BY MANY MODULES -->
423
+ <!-- ============================================================= -->
424
+
425
+
426
+ <!-- COMMON (SHARED) ELEMENT DECLARATIONS -->
427
+ <!ENTITY % common.ent
428
+ PUBLIC
429
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Common (Shared) Elements Module v1.3 20210610//EN"
430
+ "JATS-common1-3.ent" >
431
+
432
+
433
+ <!-- ============================================================= -->
434
+ <!-- CLASS MODULES (ALPHABETICAL ORDER) -->
435
+ <!-- ============================================================= -->
436
+
437
+
438
+ <!-- ARTICLE METADATA ELEMENTS -->
439
+ <!ENTITY % articlemeta.ent
440
+ PUBLIC
441
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Journal Article Metadata Elements v1.3 20210610//EN"
442
+ "JATS-articlemeta1-3.ent" >
443
+
444
+
445
+ <!-- BACK MATTER ELEMENTS -->
446
+ <!ENTITY % backmatter.ent
447
+ PUBLIC
448
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Back Matter Elements v1.3 20210610//EN"
449
+ "JATS-backmatter1-3.ent" >
450
+
451
+
452
+ <!-- DISPLAY (GRAPHICAL) ELEMENTS INVOCATION -->
453
+ <!ENTITY % display.ent
454
+ PUBLIC
455
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Display Class Elements v1.3 20210610//EN"
456
+ "JATS-display1-3.ent" >
457
+
458
+
459
+ <!-- FORMATTING ELEMENTS -->
460
+ <!-- Elements that change rendition/display. This
461
+ module includes the Appearance Class, the
462
+ Break Class, and the Emphasis Class -->
463
+ <!ENTITY % format.ent
464
+ PUBLIC
465
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Formatting Element Classes v1.3 20210610//EN"
466
+ "JATS-format1-3.ent" >
467
+
468
+
469
+ <!-- FUNDING ELEMENTS -->
470
+ <!-- Elements that model open access, grant,
471
+ sponsorship, or other funding information,
472
+ for example the grant number (<award-id>)
473
+ and the <principal-investigator> -->
474
+ <!ENTITY % funding.ent
475
+ PUBLIC
476
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Funding Elements v1.3 20210610//EN"
477
+ "JATS-funding1-3.ent" >
478
+
479
+
480
+ <!-- JOURNAL METADATA ELEMENTS -->
481
+ <!ENTITY % journalmeta.ent PUBLIC
482
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Journal Metadata Elements v1.3 20210610//EN"
483
+ "JATS-journalmeta1-3.ent" >
484
+
485
+
486
+ <!-- LINK ELEMENTS -->
487
+ <!ENTITY % link.ent PUBLIC
488
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Link Class Elements v1.3 20210610//EN"
489
+ "JATS-link1-3.ent" >
490
+
491
+
492
+ <!-- LIST ELEMENTS -->
493
+ <!ENTITY % list.ent PUBLIC
494
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite List Class Elements v1.3 20210610//EN"
495
+ "JATS-list1-3.ent" >
496
+
497
+
498
+ <!-- MATH ELEMENTS -->
499
+ <!ENTITY % math.ent PUBLIC
500
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Math Class Elements v1.3 20210610//EN"
501
+ "JATS-math1-3.ent" >
502
+
503
+
504
+ <!-- PARAGRAPH-LEVEL ELEMENTS -->
505
+ <!ENTITY % para.ent PUBLIC
506
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Paragraph-Like Elements v1.3 20210610//EN"
507
+ "JATS-para1-3.ent" >
508
+
509
+
510
+ <!-- PHRASE-LEVEL CONTENT ELEMENTS -->
511
+ <!ENTITY % phrase.ent
512
+ PUBLIC
513
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Subject Phrase Class Elements v1.3 20210610//EN"
514
+ "JATS-phrase1-3.ent" >
515
+
516
+
517
+ <!-- BIBLIOGRAPHY REFERENCES (CITATION) ELEMENTS-->
518
+ <!ENTITY % references.ent
519
+ PUBLIC
520
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Bibliographic Reference (Citation) Class Elements v1.3 20210610//EN"
521
+ "JATS-references1-3.ent" >
522
+
523
+
524
+ <!-- RELATED OBJECT ELEMENT -->
525
+ <!-- Defines the <related-object> element to
526
+ describe a related object such as a
527
+ related book or a dataset. -->
528
+ <!ENTITY % related-object.ent
529
+ PUBLIC
530
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Related Object Element v1.3 20210610//EN"
531
+ "JATS-related-object1-3.ent" >
532
+
533
+
534
+ <!-- SECTION ELEMENTS -->
535
+ <!ENTITY % section.ent
536
+ PUBLIC
537
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Section Class Elements v1.3 20210610//EN"
538
+ "JATS-section1-3.ent" >
539
+
540
+
541
+ <!-- ============================================================= -->
542
+ <!-- TABLES: XHTML TABLE MODULES -->
543
+ <!-- ============================================================= -->
544
+
545
+
546
+ <!-- XHTML TABLE SETUP MODULE -->
547
+ <!-- Set all Parameter Entities needed by the
548
+ HTML 4.0 (XHTML) table model, and then
549
+ call the module containing that model.
550
+ Authoring Note: If wanted, this module
551
+ will be invoked in the DTD module -->
552
+ <!ENTITY % XHTMLtablesetup.ent
553
+ PUBLIC
554
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite XHTML Table Setup Module v1.3 20210610//EN"
555
+ "JATS-XHTMLtablesetup1-3.ent" >
556
+
557
+
558
+ <!-- XHTML TABLE MODEL -->
559
+ <!-- The public XML version of the XHTML 1.1
560
+ table model. This module is invoked in the
561
+ module %JATS-XHTMLtablesetup1-3d2.ent; -->
562
+ <!ENTITY % xhtml-table-1.mod
563
+ PUBLIC
564
+ "-//W3C//ELEMENTS XHTML Tables 1.0//EN"
565
+ "xhtml-table-1.mod" >
566
+
567
+
568
+ <!-- XHTML TABLE INLINE STYLE MODULE -->
569
+ <!-- The public XML version of the XHTML 1.1
570
+ inline style module for use in XHTML tables.
571
+ This module is invoked in the
572
+ module %JATS-XHTMLtablesetup1-3d2.ent; -->
573
+ <!ENTITY % xhtml-inlstyle-1.mod
574
+ PUBLIC
575
+ "-//W3C//ENTITIES XHTML Inline Style 1.0//EN"
576
+ "xhtml-inlstyle-1.mod" >
577
+
578
+
579
+ <!-- ============================================================= -->
580
+ <!-- ALI: NISO ACCESS AND INDICATORS -->
581
+ <!-- ============================================================= -->
582
+
583
+
584
+ <!-- NISO ACCESS AND INDICATORS (RP-22-1015) -->
585
+ <!-- Set all Parameter Entities needed by the
586
+ NISO ALI licensing elements.
587
+ This module is invoked by each DTD. -->
588
+ <!ENTITY % JATS-ali-namespace.ent
589
+ PUBLIC
590
+ "-//NLM//DTD JATS ALI Namespace Module v1.3 20210610//EN"
591
+ "JATS-ali-namespace1-3.ent" >
592
+
593
+
594
+ <!-- ============================================================= -->
595
+ <!-- TABLES: OASIS EXCHANGE TABLE MODULES -->
596
+ <!-- ============================================================= -->
597
+
598
+
599
+ <!-- OASIS XML TABLE SETUP MODULE -->
600
+ <!-- Set all Parameter Entities needed by the
601
+ OASIS (CALS) Table Exchange table model.
602
+ Authoring Note: If wanted, this module
603
+ will be invoked in the DTD module -->
604
+ <!ENTITY % oasis-tablesetup.ent
605
+ PUBLIC
606
+ "-//NLM//DTD JATS (Z39.96) Namespaced OASIS XML Table Setup Module v1.3 20210610//EN"
607
+ "JATS-oasis-tablesetup1-3.ent" >
608
+
609
+
610
+ <!-- OASIS XML TABLE MODEL -->
611
+ <!-- The OASIS (CALS) Table Exchange table model
612
+ This module is invoked in
613
+ %JATS-oasis-tablesetup1-3d2.ent; -->
614
+ <!ENTITY % oasis-exchange.ent
615
+ PUBLIC
616
+ "-//OASIS//DTD XML Exchange Table Model 19990315//EN"
617
+ "oasis-exchange.ent" >
618
+
619
+
620
+ <!-- ============================================================= -->
621
+ <!-- SPECIAL CHARACTER MODULES -->
622
+ <!-- ============================================================= -->
623
+
624
+
625
+ <!-- SPECIAL CHARACTERS DECLARATIONS -->
626
+ <!-- Declares any standard XML special character
627
+ entities used in this DTD -->
628
+ <!ENTITY % xmlspecchars.ent
629
+ PUBLIC
630
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite XML Special Characters Module v1.3 20210610//EN"
631
+ "JATS-xmlspecchars1-3.ent" >
632
+
633
+
634
+ <!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
635
+ <!-- Declares any custom special character
636
+ entities created for this Suite -->
637
+ <!ENTITY % chars.ent PUBLIC
638
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Custom Special Characters Module v1.3 20210610//EN"
639
+ "JATS-chars1-3.ent" >
640
+
641
+
642
+ <!-- ============================================================= -->
643
+ <!-- MATH: MATHML MODULES -->
644
+ <!-- Only one of the modules below may be -->
645
+ <!-- invoked by a DTD. -->
646
+ <!-- ============================================================= -->
647
+
648
+
649
+ <!-- MATHML 2.0 SETUP MODULE -->
650
+ <!-- Called from the DTD to include the MathML 2.0
651
+ elements in the tag set. -->
652
+ <!ENTITY % mathmlsetup.ent
653
+ PUBLIC
654
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite MathML Setup Module v1.3 20210610//EN"
655
+ "JATS-mathmlsetup1-3.ent" >
656
+
657
+
658
+ <!-- MATHML 3.0 SETUP MODULE -->
659
+ <!-- Called from the DTD to include the MathML 3.0
660
+ elements in the tag set. -->
661
+ <!ENTITY % mathml3-mathmlsetup.ent
662
+ PUBLIC
663
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite MathML 3.0 Setup Module v1.3 20210610//EN"
664
+ "JATS-mathml3-mathmlsetup1-3.ent" >
665
+
666
+
667
+ <!-- ============================================================= -->
668
+ <!-- MATHML 2.0 MODULES (below for JATS V1) -->
669
+ <!-- MATHML 3.0 modules are invoked in the DTD -->
670
+ <!-- ============================================================= -->
671
+
672
+
673
+ <!-- MATHML 2.0 QUALIFIED NAMES -->
674
+ <!ENTITY % mathml-qname.mod
675
+ PUBLIC
676
+ "-//W3C//ENTITIES MathML 2.0 Qualified Names 1.0//EN"
677
+ "mathml2-qname-1.mod" >
678
+
679
+
680
+ <!-- MATHML 2.0 DTD -->
681
+ <!ENTITY % mathml.dtd PUBLIC
682
+ "-//W3C//DTD MathML 2.0//EN"
683
+ "mathml2.dtd" >
684
+
685
+
686
+ <!-- MATHML 2.0 EXTRA ENTITIES -->
687
+ <!ENTITY % ent-mmlextra
688
+ PUBLIC
689
+ "-//W3C//ENTITIES Extra for MathML 2.0//EN"
690
+ "mathml/mmlextra.ent" >
691
+
692
+
693
+ <!-- MATHML 2.0 ALIASES -->
694
+ <!ENTITY % ent-mmlalias
695
+ PUBLIC
696
+ "-//W3C//ENTITIES Aliases for MathML 2.0//EN"
697
+ "mathml/mmlalias.ent" >
698
+
699
+
700
+ <!-- ============================================================= -->
701
+ <!-- NOTATIONS MODULE -->
702
+ <!-- ============================================================= -->
703
+
704
+
705
+ <!-- NOTATION DECLARATIONS MODULE -->
706
+ <!-- Container module for the Notation Declarations
707
+ to be used with this DTD suite. Placed in
708
+ their own module for easy expansion or
709
+ replacement. -->
710
+ <!ENTITY % notat.ent PUBLIC
711
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite Notation Declarations v1.3 20210610//EN"
712
+ "JATS-notat1-3.ent" >
713
+
714
+ <!-- ============================================================= -->
715
+ <!-- NLM CITATION (DEPRECATED ELEMENT) MODULE -->
716
+ <!-- ============================================================= -->
717
+
718
+
719
+ <!-- NLM CITATION MODULE -->
720
+ <!-- The only new element created for the
721
+ Publishing DTD, the highly structured NLM
722
+ citation, to enforce a slightly loose version
723
+ of an NLM-structured bibliographic reference.
724
+ Sequence is enforced and interior punctuation
725
+ is expected to be generated. -->
726
+ <!ENTITY % nlmcitation.ent
727
+ PUBLIC
728
+ "-//NLM//DTD JATS (Z39.96) NLM Citation v1.3 20210610//EN"
729
+ "JATS-nlmcitation1-3.ent" >
730
+
731
+ <!-- ============================================================= -->
732
+ <!-- MODULES TO ADD BITS INLINE INDEX ELEMENTS -->
733
+ <!-- ============================================================= -->
734
+
735
+
736
+ <!-- BITS 2.0 EMBEDDED INDEX ELEMENTS MOD -->
737
+ <!-- Element declarations the index elements
738
+ which are embedded in the document
739
+ narrative. -->
740
+ <!ENTITY % index-term.ent
741
+ PUBLIC
742
+ "-//NLM//DTD BITS Embedded Index Element Module v2.0 20151225//EN"
743
+ "BITS-embedded-index2.ent" >
744
+
745
+ <!-- ============================================================= -->
746
+ <!-- MODULES TO ADD BITS QUESTION/ANSWERS -->
747
+ <!-- ============================================================= -->
748
+
749
+
750
+ <!-- BITS 2.0 QUESTION AND ANSWER MODULE -->
751
+ <!-- Element declarations for BITS questions
752
+ and answers (not complete tests, but used
753
+ to put build quizzes and tests. -->
754
+ <!ENTITY % question-answer.ent
755
+ PUBLIC
756
+ "-//NLM//DTD BITS Question and Answer Module v2.0 20151225//EN"
757
+ "BITS-question-answer2.ent" >
758
+
759
+ <!-- ============================================================= -->
760
+ <!-- NAMESPACE FOR W3C XSI PREFIX FOR DTDS
761
+ THAT DO NOT USE MATHML -->
762
+ <!-- ============================================================= -->
763
+
764
+ <!--<!ENTITY % JATS-xsi-schema-namespace.ent
765
+ PUBLIC
766
+ "-//NLM//DTD JATS (Z39.96) JATS DTD Suite XSI Namespace Setup Module v1.3 20210610//EN"
767
+ "JATS-xsi-schema-namespace1-3.ent" >
768
+ -->
769
+ <!-- =================== End Journal Article Module of Modules === -->